BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00005981
         (3752 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  1838   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  1823   0.0  
gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...  1818   0.0  
gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...  1818   0.0  
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]   1818   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  1816   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  1814   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  1813   0.0  
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su...  1812   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  1812   0.0  
gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indi...  1806   0.0  
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe...  1806   0.0  
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru...  1801   0.0  
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...  1800   0.0  
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S...  1800   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  1799   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1799   0.0  
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...  1797   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  1792   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  1792   0.0  

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 1838 bits (4761), Expect = 0.0
 Identities = 900/994 (90%), Positives = 952/994 (95%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKPRP+WTGKQVFNLIIPKQINL+R SAWH E+ETGF+TPGDT+V +E+GELL
Sbjct: 572  KIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            +GTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  AGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK LIRAAQE+QLE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIE+QKLDSLKMKK EFD  ++YE D +NW P YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVFDAEVQKLE DR QL T+IATTGDNSWP+PVNLKRL+WNAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            VD+R  SDMHPMEIVEAVDKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  VDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L P++SKTKERAKNVQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEEDVDFV+SYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPMSTIIEEDVDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+NDEA KG+ + +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK E EWMLDTEGVNLLAVMCHE+VDA RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKSGKVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1385



 Score =  222 bits (566), Expect = 9e-55
 Identities = 110/128 (85%), Positives = 119/128 (92%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGP+MRCSFEETVDILLDAAVYAE+D+LRGVTENIMLGQLAPIGTG CALYLN+ 
Sbjct: 1409 INRNDTGPMMRCSFEETVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQ 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            MLQHAIELQLPSY EGLDFGMTPSRSPITGTPY +GMMSP+YLLSPNLR SP+ +D  FS
Sbjct: 1469 MLQHAIELQLPSYMEGLDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPI-TDAQFS 1527

Query: 3347 PFVGGMGF 3370
            P+VGGM F
Sbjct: 1528 PYVGGMAF 1535


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 1823 bits (4721), Expect = 0.0
 Identities = 894/994 (89%), Positives = 947/994 (95%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRYLKKS DHHLELGYKVERHLND
Sbjct: 395  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSGDHHLELGYKVERHLND 454

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 455  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 514

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 515  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 574

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKPRP+WTGKQVFNLIIPKQINL+R+SAWH E+E+GF+TPGDT V +ERGELL
Sbjct: 575  KIPAPAILKPRPLWTGKQVFNLIIPKQINLIRYSAWHSESESGFITPGDTCVRIERGELL 634

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+SSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADA
Sbjct: 635  SGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADA 694

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK LI+AAQEKQLE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 695  ATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 754

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF  RTLPHFTKDDYG
Sbjct: 755  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYG 814

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 815  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 874

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMK++EF+  Y+YE D +NW P YML 
Sbjct: 875  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLP 934

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREF+NVFDAEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQK FK
Sbjct: 935  EHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFK 994

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            VD+R  SDMHPMEIVEAVDKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 995  VDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVL 1054

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L REAF+WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1055 KEYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1114

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L  E++KTKE+AKNVQC LEYT LRSVT ATEV
Sbjct: 1115 NVTLGVPRLREIINVAKKIKTPSLSVYLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEV 1174

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEEDVDFVRSYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1175 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAE 1234

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+NDEA KG+ + +S+EDDVFLKK+  +MLTEM
Sbjct: 1235 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDESSEDDVFLKKIESNMLTEM 1294

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  K+NKFDE +GFK E EWMLDTEGVNLLAVMC+EEVDATRTTSNH
Sbjct: 1295 ALRGIPDINKVFIKSGKINKFDENEGFKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNH 1354

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV++VLGIEAVR+ALLDELRVVISFDGSYVNY
Sbjct: 1355 LIEVIQVLGIEAVRRALLDELRVVISFDGSYVNY 1388



 Score =  213 bits (542), Expect = 5e-52
 Identities = 107/128 (83%), Positives = 117/128 (91%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGP+MRCSFEETVDILLDAAVYAE+D+LRGVTENIMLGQLAPIGTG CALYLN+ 
Sbjct: 1412 INRNDTGPMMRCSFEETVDILLDAAVYAEADHLRGVTENIMLGQLAPIGTGDCALYLNDQ 1471

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            MLQ AIELQLPSY EG+DFGMTPSRSP+TGTPY EGMMSP YLLSPN+R SP+ +D  FS
Sbjct: 1472 MLQQAIELQLPSYMEGMDFGMTPSRSPMTGTPYHEGMMSP-YLLSPNMRSSPI-TDAQFS 1529

Query: 3347 PFVGGMGF 3370
            P+VGGM F
Sbjct: 1530 PYVGGMAF 1537


>gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1861

 Score = 1818 bits (4708), Expect = 0.0
 Identities = 887/994 (89%), Positives = 943/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAIL+PRPIWTGKQVFNLIIPK INL+RFSAWH ETE+GF+TPGDT V +E+GELL
Sbjct: 572  KVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETI  AKNEVK LI+ AQEK LEPEPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK+EFD  +RYE D +NW P YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            +HVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDN+WP+PVNLKRL+WNAQKTFK
Sbjct: 932  DHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEA KG+ + +SAEDDVFLKK+ G+MLTEM
Sbjct: 1232 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK + EWMLDTEGVNLLAVMCHE+VD+TRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKYGKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1385



 Score =  206 bits (523), Expect = 8e-50
 Identities = 104/129 (80%), Positives = 113/129 (87%), Gaps = 2/129 (1%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGC LYLN+ 
Sbjct: 1409 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQ 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPYE--GMMSPSYLLSPNLRQSPMSSDVTF 3343
            MLQ AIELQLPSY EGLD+GMTP+RSP++ TPY   GMMSP  +LSPN R SP+ +D  F
Sbjct: 1469 MLQQAIELQLPSYVEGLDYGMTPARSPMSATPYRDGGMMSP--MLSPNFRASPI-TDAQF 1525

Query: 3344 SPFVGGMGF 3370
            SP+VGGM F
Sbjct: 1526 SPYVGGMAF 1534


>gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 2040

 Score = 1818 bits (4708), Expect = 0.0
 Identities = 887/994 (89%), Positives = 943/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAIL+PRPIWTGKQVFNLIIPK INL+RFSAWH ETE+GF+TPGDT V +E+GELL
Sbjct: 572  KVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETI  AKNEVK LI+ AQEK LEPEPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK+EFD  +RYE D +NW P YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            +HVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDN+WP+PVNLKRL+WNAQKTFK
Sbjct: 932  DHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEA KG+ + +SAEDDVFLKK+ G+MLTEM
Sbjct: 1232 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK + EWMLDTEGVNLLAVMCHE+VD+TRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKYGKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1385



 Score =  206 bits (523), Expect = 8e-50
 Identities = 104/129 (80%), Positives = 113/129 (87%), Gaps = 2/129 (1%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGC LYLN+ 
Sbjct: 1409 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQ 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPYE--GMMSPSYLLSPNLRQSPMSSDVTF 3343
            MLQ AIELQLPSY EGLD+GMTP+RSP++ TPY   GMMSP  +LSPN R SP+ +D  F
Sbjct: 1469 MLQQAIELQLPSYVEGLDYGMTPARSPMSATPYRDGGMMSP--MLSPNFRASPI-TDAQF 1525

Query: 3344 SPFVGGMGF 3370
            SP+VGGM F
Sbjct: 1526 SPYVGGMAF 1534


>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score = 1818 bits (4708), Expect = 0.0
 Identities = 887/994 (89%), Positives = 943/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAIL+PRPIWTGKQVFNLIIPK INL+RFSAWH ETE+GF+TPGDT V +E+GELL
Sbjct: 572  KVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETI  AKNEVK LI+ AQEK LEPEPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK+EFD  +RYE D +NW P YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            +HVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDN+WP+PVNLKRL+WNAQKTFK
Sbjct: 932  DHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEA KG+ + +SAEDDVFLKK+ G+MLTEM
Sbjct: 1232 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK + EWMLDTEGVNLLAVMCHE+VD+TRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKYGKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1385



 Score =  206 bits (523), Expect = 8e-50
 Identities = 104/129 (80%), Positives = 113/129 (87%), Gaps = 2/129 (1%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGC LYLN+ 
Sbjct: 1409 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQ 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPYE--GMMSPSYLLSPNLRQSPMSSDVTF 3343
            MLQ AIELQLPSY EGLD+GMTP+RSP++ TPY   GMMSP  +LSPN R SP+ +D  F
Sbjct: 1469 MLQQAIELQLPSYVEGLDYGMTPARSPMSATPYRDGGMMSP--MLSPNFRASPI-TDAQF 1525

Query: 3344 SPFVGGMGF 3370
            SP+VGGM F
Sbjct: 1526 SPYVGGMAF 1534


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score = 1816 bits (4703), Expect = 0.0
 Identities = 884/994 (88%), Positives = 942/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMN LMWW+DFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNTLMWWQDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKPRPIWTGKQVFNLIIPKQINL+RFSAWH ETETGF+TPGDT V +E+GELL
Sbjct: 572  KIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSETETGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK+LG+ SGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADA
Sbjct: 632  SGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK LI+ AQ+K LE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISKAKNEVKELIKQAQDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQKTFK
Sbjct: 932  EHVDDLKTIREFRNVFEAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMM+DKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILRIRI ND+A KG+ + +SAEDDVFLKK+ G+MLTEM
Sbjct: 1232 KINREFDDDLSCIFNDDNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFD+ +GFKA+ EWMLDTEGVNLLAVMCHE+VDATRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKHGKVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1385



 Score =  223 bits (569), Expect = 4e-55
 Identities = 109/128 (85%), Positives = 119/128 (92%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAE+D LRGVTENIMLGQLAPIGTGGCALYLN+ 
Sbjct: 1409 INRNDTGPLMRCSFEETVDILLDAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYLNDQ 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            MLQ AIELQLPSY EGLDFGMTP+RSPI+GTPY EGMMSPSYLLSPN+R SP+++D +FS
Sbjct: 1469 MLQQAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFS 1528

Query: 3347 PFVGGMGF 3370
            P+VG M F
Sbjct: 1529 PYVGHMAF 1536


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 1814 bits (4698), Expect = 0.0
 Identities = 883/994 (88%), Positives = 941/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HL+LGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLDLGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWW+DFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKPRPIWTGKQVFNLIIPKQINL+RFSAWH ETETGF+TPGDT V +E+GELL
Sbjct: 572  KIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSETETGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK+LG+ SGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADA
Sbjct: 632  SGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK LI+ A E  LE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISKAKNEVKELIKQAHENHLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQKTFK
Sbjct: 932  EHVDDLKTIREFRNVFEAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMM+DKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILRIRI ND+A KG+ + +SAEDDVFLKK+ G+MLTEM
Sbjct: 1232 KINREFDDDLSCIFNDDNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFD+ +GFKA+ EWMLDTEGVNLLAVMCHE+VDATRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKHGKVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1385



 Score =  223 bits (569), Expect = 4e-55
 Identities = 109/128 (85%), Positives = 119/128 (92%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAE+D LRGVTENIMLGQLAPIGTGGCALYLN+ 
Sbjct: 1409 INRNDTGPLMRCSFEETVDILLDAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYLNDQ 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            MLQ AIELQLPSY EGLDFGMTP+RSPI+GTPY EGMMSPSYLLSPN+R SP+++D +FS
Sbjct: 1469 MLQQAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFS 1528

Query: 3347 PFVGGMGF 3370
            P+VG M F
Sbjct: 1529 PYVGHMAF 1536


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 1813 bits (4695), Expect = 0.0
 Identities = 888/994 (89%), Positives = 940/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 390  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 449

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 450  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 509

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 510  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 569

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRP+WTGKQVFNLIIPKQINL R SAWH E+ETG +TPGDT V +E+GELL
Sbjct: 570  KVPAPAILKPRPLWTGKQVFNLIIPKQINLQRTSAWHSESETGNITPGDTHVRIEKGELL 629

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK LG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 630  SGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 689

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK LI  AQ K LEPEPGRTMM+SFEN+VNQVLN+ARDDAGSSA
Sbjct: 690  ATMEKINETISKAKNEVKELISKAQSKSLEPEPGRTMMDSFENKVNQVLNRARDDAGSSA 749

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYG
Sbjct: 750  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 809

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 810  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 869

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD T+ Y FD +NW PDYML 
Sbjct: 870  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFDKTFAYVFDDENWNPDYMLP 929

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVFDAEV KLE DR QL T+IA TGDNSWPLPVNLKRL+WNAQKTFK
Sbjct: 930  EHVEDLKTIREFRNVFDAEVSKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFK 989

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERL+VVPG+D LS EAQKNATLFFNILLRST ASKRVL
Sbjct: 990  IDFRRTSDMHPMEIVEAIDKLQERLRVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVL 1049

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            +E++L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1050 EEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1109

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAK+IKTPSLSV+L PE +KTKERAKNVQC LEYT LRSVT ATEV
Sbjct: 1110 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEV 1169

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMST+IEED+DFVRSYYEMPDEEV+PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1170 WYDPDPMSTLIEEDLDFVRSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAE 1229

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KINLEF  D+TCIF DDNAEKLILRIRI+N+E  KGD + +SAEDDVFLKK+  +MLTEM
Sbjct: 1230 KINLEFDGDLTCIFNDDNAEKLILRIRIMNEETPKGDSQDESAEDDVFLKKIESNMLTEM 1289

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFD+ +GFKAE EWMLDTEGVNLLAV+CH++VDA RTTSNH
Sbjct: 1290 ALRGIPDINKVFIKHGKVNKFDQNEGFKAEQEWMLDTEGVNLLAVLCHDDVDAKRTTSNH 1349

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIE++EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1350 LIEIIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1383



 Score =  212 bits (539), Expect = 1e-51
 Identities = 102/128 (79%), Positives = 119/128 (92%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGP+MRCSFEETVDILLDA+V+AE+D+LRGVTENIMLGQLAPIGTG CALYLN+ 
Sbjct: 1407 INRNDTGPMMRCSFEETVDILLDASVFAETDHLRGVTENIMLGQLAPIGTGDCALYLNDE 1466

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            ML++AIELQLPSY +GLDFGMTPSRSP++GTP+ +GMMSP+YLLSPN+R SP+ SD  FS
Sbjct: 1467 MLKNAIELQLPSYVDGLDFGMTPSRSPVSGTPFRDGMMSPNYLLSPNMRMSPI-SDAQFS 1525

Query: 3347 PFVGGMGF 3370
            P+VGGM F
Sbjct: 1526 PYVGGMAF 1533


>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Brachypodium distachyon]
          Length = 1862

 Score = 1812 bits (4694), Expect = 0.0
 Identities = 884/994 (88%), Positives = 942/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 393  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 452

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 453  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 512

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 513  AEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 572

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRPIWTGKQVFNLIIPK INL+RFSAWH E+E+GF+TPGDT V +E+GELL
Sbjct: 573  KVPAPAILKPRPIWTGKQVFNLIIPKLINLIRFSAWHAESESGFITPGDTMVRIEKGELL 632

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+ +GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 633  SGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 692

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            +TME INETISKAK+EV  LI+ AQ+K LEPEPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 693  STMEKINETISKAKSEVTELIKQAQDKLLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 752

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTK+DYG
Sbjct: 753  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKNDYG 812

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 813  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 872

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIE+QKLDSLKMKK+EFD  YRYE D +NW P YML 
Sbjct: 873  GTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKAEFDNVYRYELDDENWRPTYMLP 932

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQKTFK
Sbjct: 933  EHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFK 992

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 993  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1052

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1053 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1112

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1113 NVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEI 1172

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEED+DFV+SYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1173 WYDPDPLGTIIEEDMDFVKSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1232

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEA KG+ + +SAEDDVFLKK+ G+MLTEM
Sbjct: 1233 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1292

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  K+NKFDE  GFK + EWMLDTEGVNLLAVMCHE+VDATRTTSNH
Sbjct: 1293 ALRGIPDINKVFIKYGKINKFDENDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1352

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1353 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1386



 Score =  197 bits (502), Expect = 2e-47
 Identities = 103/130 (79%), Positives = 112/130 (86%), Gaps = 3/130 (2%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGC LYLN+ 
Sbjct: 1410 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQ 1469

Query: 3170 MLQHAIELQLPSYAEGLDF-GMTPSRSPITGTPYE--GMMSPSYLLSPNLRQSPMSSDVT 3340
            MLQ AIELQLPSY EGL++ GMTP+R+  +GTPY   GMMSP  +LSPN R SP+ SD  
Sbjct: 1470 MLQQAIELQLPSYVEGLEYIGMTPARASPSGTPYHDGGMMSP--MLSPNFRSSPI-SDAQ 1526

Query: 3341 FSPFVGGMGF 3370
            FSP+VGGM F
Sbjct: 1527 FSPYVGGMAF 1536


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 1812 bits (4693), Expect = 0.0
 Identities = 885/994 (89%), Positives = 941/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRPIWTGKQVFNLIIPK INL+RFSAWH E ETGF+TPGDT V +E+GELL
Sbjct: 572  KVPAPAILKPRPIWTGKQVFNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETIS AKNEVK LI+ A +K LE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISTAKNEVKELIKQAHDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFDT +RYE D +NW P+YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDTVFRYELDDENWRPNYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVF+AEVQKLE DR QL T+IATTGDN+WP+PVNLKRL+WNAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE+V PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDVDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEA KG+ + +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKF++  GFK + EWMLDTEGVNLLAVMCHE+VDATRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKYGKVNKFEDNDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR+ALLDELRVVISFDGSYVNY
Sbjct: 1352 LIEVIEVLGIEAVRRALLDELRVVISFDGSYVNY 1385



 Score =  225 bits (573), Expect = 1e-55
 Identities = 112/128 (87%), Positives = 119/128 (92%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLN+ 
Sbjct: 1409 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQ 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            MLQ AIELQLPSY EGLDFGMTP+RSPI+GTPY EGMMSPSYLLSPN+R SP+ +D  FS
Sbjct: 1469 MLQQAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPI-TDAQFS 1527

Query: 3347 PFVGGMGF 3370
            P+VGGM F
Sbjct: 1528 PYVGGMAF 1535


>gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
          Length = 1449

 Score = 1806 bits (4678), Expect = 0.0
 Identities = 882/994 (88%), Positives = 941/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 362  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 421

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 422  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 481

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 482  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 541

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRPIWTGKQVFNLIIPK INL+RFSAWH E ETGF+TPGDT V +E+GELL
Sbjct: 542  KVPAPAILKPRPIWTGKQVFNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRIEKGELL 601

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 602  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 661

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATM  INETISKAK++VK LI+ A +KQLE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 662  ATMVKINETISKAKDDVKELIKQAHDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 721

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 722  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 781

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 782  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 841

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML 
Sbjct: 842  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLP 901

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL ++IATTGDN+WP+PVNLKRL+WNAQKTFK
Sbjct: 902  EHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFK 961

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 962  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1021

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1022 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1081

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1082 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 1141

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1142 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1201

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEA KG+ + +SAEDDVFLKK+  +MLTEM
Sbjct: 1202 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEM 1261

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKF++  GFKA+ EWML TEGVNLLAVMCHE+VDATRTTSNH
Sbjct: 1262 ALRGIPDINKVFIKYGKVNKFEDNVGFKADNEWMLVTEGVNLLAVMCHEDVDATRTTSNH 1321

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR+ALLDELRVVISFDGSYVNY
Sbjct: 1322 LIEVIEVLGIEAVRRALLDELRVVISFDGSYVNY 1355



 Score =  106 bits (264), Expect = 9e-20
 Identities = 53/66 (80%), Positives = 57/66 (86%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGV+ENIMLGQLAPIGTGG  L   E 
Sbjct: 1379 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVSENIMLGQLAPIGTGGFDLSCFER 1438

Query: 3170 MLQHAI 3187
             ++  +
Sbjct: 1439 RVKFGL 1444


>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 1806 bits (4677), Expect = 0.0
 Identities = 888/994 (89%), Positives = 938/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+ GPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVENGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRP+WTGKQVFNLIIPKQINL R SAWH E E+G +TPGDT V +E+GELL
Sbjct: 572  KVPAPAILKPRPLWTGKQVFNLIIPKQINLQRTSAWHSEAESGNITPGDTFVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            +GTLCKK LG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 632  AGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK+LI  AQ KQLE EPGRTMM+SFEN+VNQVLN+ARDDAGSSA
Sbjct: 692  ATMEKINETISKAKNEVKDLISKAQSKQLEAEPGRTMMDSFENKVNQVLNRARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKKSEFD T+ YE D +NW PDYML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKTFSYELDDENWNPDYMLH 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVFDAEVQKLE DR QL T+IA TGDNSWPLPVNLKRL+WNAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFDAEVQKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPG+D LS EAQKNATLFF+ILLRST ASKRVL
Sbjct: 992  IDFRRTSDMHPMEIVEAIDKLQERLKVVPGDDLLSVEAQKNATLFFSILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
             E++L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 DEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAK+IKTPSLSV+L PE +KTKERAKNVQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEEDVDFV SYYEMPDEEV+PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPMSTIIEEDVDFVNSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+N EA KG+   +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNAEAPKGELVDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFD  +GFKAE EWMLDTEGVNLLAV+CH++VDA RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKHGKVNKFDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIE++E+LGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1352 LIEILEILGIEAVRRSLLDELRVVISFDGSYVNY 1385



 Score =  217 bits (553), Expect = 3e-53
 Identities = 107/128 (83%), Positives = 119/128 (92%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGP+MRCSFEETVDILLDAAV+AE+DYLRGVTENIMLGQLAPIGTG CALYLN+ 
Sbjct: 1409 INRNDTGPMMRCSFEETVDILLDAAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDE 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            ML++AIELQLPSY +GLDFGMTPSRSP++GTPY EGMMSP+YLLSPNLR SP+ SD  FS
Sbjct: 1469 MLKNAIELQLPSYMDGLDFGMTPSRSPVSGTPYHEGMMSPNYLLSPNLRLSPI-SDAQFS 1527

Query: 3347 PFVGGMGF 3370
            P+VGGM F
Sbjct: 1528 PYVGGMAF 1535


>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
          Length = 1866

 Score = 1801 bits (4666), Expect = 0.0
 Identities = 893/1014 (88%), Positives = 942/1014 (92%), Gaps = 20/1014 (1%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK------- 161
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK       
Sbjct: 387  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKARLPILL 446

Query: 162  -------------VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 302
                         VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY
Sbjct: 447  LLLLFLGPWSGSVVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 506

Query: 303  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRD 482
            NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRD
Sbjct: 507  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 566

Query: 483  TFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQET 662
            TFIEKDVFMNILMWWEDFDGKVP PAILKPRP+WTGKQVFNLIIPKQINL R SAWH E+
Sbjct: 567  TFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLNRTSAWHAES 626

Query: 663  ETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLV 842
            E+G++TPGDT V +E+GELLSGTLCKKTLG+SSGSLIHVIWEEVGPDAARKFLGHTQWLV
Sbjct: 627  ESGYITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLV 686

Query: 843  NYWLLQNGFSIGIGDTIADAATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMES 1022
            NYWLLQNGFSIGIGDTIADA+TME INETIS+AKN+VK LIR AQ K+LE EPGRTMMES
Sbjct: 687  NYWLLQNGFSIGIGDTIADASTMEKINETISRAKNDVKELIRKAQAKELEAEPGRTMMES 746

Query: 1023 FENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 1202
            FEN+VNQVLNKARDDAGSSAQ+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK
Sbjct: 747  FENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 806

Query: 1203 RIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 1382
            RIP+GF+ RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE
Sbjct: 807  RIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 866

Query: 1383 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEF 1562
            TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKK+EF
Sbjct: 867  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKTEF 926

Query: 1563 DTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDN 1742
            +  +RYEFD + W P YML EHV+DLKTIREFRNVFDAEVQKLE DR QL T+IATTGDN
Sbjct: 927  ERVFRYEFDNETWNPTYMLPEHVEDLKTIREFRNVFDAEVQKLESDRLQLGTEIATTGDN 986

Query: 1743 SWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQK 1922
            SWPLPVNLKRL+ NAQKTFK+D R  SDMHPMEIVEA+DKLQERLKVVPGED LS EAQK
Sbjct: 987  SWPLPVNLKRLIQNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQK 1046

Query: 1923 NATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 2102
            NATLFFNILLRST ASKRVL+E++L RE FEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 1047 NATLFFNILLRSTFASKRVLEEYRLTREGFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1106

Query: 2103 GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAK 2282
            GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVFL PE SKTKERAK
Sbjct: 1107 GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVFLKPEASKTKERAK 1166

Query: 2283 NVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLR 2462
             VQC LEYT LRSVT ATEVWYDPDPMSTII+EDVDFVRSYYEMPDEE++PDKISPWLLR
Sbjct: 1167 TVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVRSYYEMPDEEINPDKISPWLLR 1226

Query: 2463 IELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEA 2642
            IELNREMMVDKKLSMADIAEKIN+EF DD+TCIF DDNAEKLILRIRI+NDEA KGD   
Sbjct: 1227 IELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGDLTD 1286

Query: 2643 DSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGV 2822
            ++AEDDVFLKK+  +MLTEM+L+GIPDINKVFIK  KVNKFDE  GFK E EWMLDTEGV
Sbjct: 1287 EAAEDDVFLKKIESNMLTEMSLRGIPDINKVFIKHGKVNKFDENDGFKPENEWMLDTEGV 1346

Query: 2823 NLLAVMCHEEVDATRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            NLLAV+CHE+VDA RTTSNHLIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1347 NLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1400



 Score =  221 bits (563), Expect = 2e-54
 Identities = 109/128 (85%), Positives = 119/128 (92%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGP+MRCSFEETVDILLDAAVYAE+DYLRGVTENIMLGQLAPIGTGGCALYLN+ 
Sbjct: 1424 INRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGGCALYLNDE 1483

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            ML++AIELQLPSY +GLDFGMTPSRSP++GTPY EGMMSP YLLSPNLR SP+ SD  FS
Sbjct: 1484 MLKNAIELQLPSYMDGLDFGMTPSRSPVSGTPYHEGMMSPGYLLSPNLRLSPI-SDAQFS 1542

Query: 3347 PFVGGMGF 3370
            P+VGGM F
Sbjct: 1543 PYVGGMAF 1550


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score = 1800 bits (4661), Expect = 0.0
 Identities = 877/994 (88%), Positives = 937/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 391  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 450

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 451  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 510

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWW+DFDG
Sbjct: 511  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDG 570

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P P ILKPRPIWTGKQVFNLIIPKQINL+RFSAWH E E GF+TPGDT V +E+GELL
Sbjct: 571  KIPAPTILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGELL 630

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK+LG+ SGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 631  SGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 690

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            +TMETIN+TISKAKN VK LI+ A EKQLE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 691  STMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 750

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 751  QNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 810

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 811  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 870

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML 
Sbjct: 871  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDDENWRPNYMLP 930

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL ++I TTGDNSWP+PVNLKRL+WNAQKTFK
Sbjct: 931  EHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQKTFK 990

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 991  IDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1050

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1051 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1110

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L P++++ KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1111 NVTLGVPRLREIINVAKKIKTPSLSVYLKPQVNQKKELAKNVQCALEYTTLRSVTHATEI 1170

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEED +FV+SYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1171 WYDPDPLGTIIEEDTEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1230

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILRIRI NDEA KG+ + +SAEDDVFLKK+ G+MLTEM
Sbjct: 1231 KINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1290

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK+ KVN F ++ GFKA  EWMLDTEGVNLLAVMCHE+VDATRTTSNH
Sbjct: 1291 ALRGIPDINKVFIKEGKVNTFYQDDGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1350

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1351 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1384



 Score =  227 bits (579), Expect = 3e-56
 Identities = 111/128 (86%), Positives = 120/128 (93%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAESD+LRGVTENIMLGQLAPIGTGGCALYLN+ 
Sbjct: 1408 INRNDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQ 1467

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            MLQ AIELQLPSY EGLDFGMTP+RSPITGTPY EGMMSPSYLLSPN+R SP+++D +FS
Sbjct: 1468 MLQQAIELQLPSYVEGLDFGMTPARSPITGTPYHEGMMSPSYLLSPNIRASPINTDASFS 1527

Query: 3347 PFVGGMGF 3370
            P+VG M F
Sbjct: 1528 PYVGHMAF 1535


>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
            gi|241940227|gb|EES13372.1| hypothetical protein
            SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score = 1800 bits (4661), Expect = 0.0
 Identities = 876/994 (88%), Positives = 941/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 391  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 450

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 451  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 510

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWW+DFDG
Sbjct: 511  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDG 570

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKPRPIWTGKQVFNLIIPKQINL+RFSAWH E E GF+TPGDT V +E+GELL
Sbjct: 571  KIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGELL 630

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK+LG+ +GSLIH+IWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 631  SGTLCKKSLGTGTGSLIHIIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 690

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            +TM+TIN+TI KAK+EVK LI+ A EKQLE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 691  STMQTINDTICKAKDEVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 750

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 751  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 810

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 811  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 870

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML 
Sbjct: 871  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNLFRYELDDENWRPNYMLP 930

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL T+IATTGDNSWP+PVNLKRL+WNAQKTF+
Sbjct: 931  EHVDDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFR 990

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEAVDKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 991  IDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDPMSIEAQKNATLFFNILLRSTFASKRVL 1050

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1051 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1110

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L PE+++ KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1111 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNQKKELAKNVQCALEYTTLRSVTHATEI 1170

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEED +FV+SYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIA+
Sbjct: 1171 WYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAD 1230

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILRIRI NDEA KG+ + +SAEDDVFLKK+ G+MLTEM
Sbjct: 1231 KINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1290

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK+ KVN F +++GFKA  EWMLDTEGVNLLAVMCHE+VDATRTTSNH
Sbjct: 1291 ALRGIPDINKVFIKEGKVNTFYQDEGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1350

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1351 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1384



 Score =  226 bits (575), Expect = 8e-56
 Identities = 110/128 (85%), Positives = 120/128 (93%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAESD+LRGVTENIMLGQLAPIGTGGCALYLN+ 
Sbjct: 1408 INRNDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQ 1467

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            MLQ AIELQLPSY EGLDFGMTP+RSPI+GTPY EGMMSPSYLLSPN+R SP+++D +FS
Sbjct: 1468 MLQQAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFS 1527

Query: 3347 PFVGGMGF 3370
            P+VG M F
Sbjct: 1528 PYVGHMAF 1535


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 1799 bits (4659), Expect = 0.0
 Identities = 884/994 (88%), Positives = 940/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFI KDVFMN LMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKP+P+WTGKQVFNLIIPKQINL R SAWH E+ETG +TPGDT V +E+GELL
Sbjct: 572  KIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK LG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 632  SGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETIS AKNEVKNLI+ AQE+ LEPEPGRTMM+SFEN+VNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EF+  +RYEF+ +NW+P+YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVF+AEVQKLE DR QL T+IATTG+NSWP+PVNLKRL+ NAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPGED LS EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
             E++L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 DEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAK+IKTPSLSV+L PE +KTKERAK VQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEED+DFV+SYYEMPDEE++P+KISPWLLRIELNREMMVDKKLSMA+IAE
Sbjct: 1172 WYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+NDEA KG+   +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK E EWMLDTEGVNLLAVM HE+VDA RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1385



 Score =  220 bits (560), Expect = 4e-54
 Identities = 109/128 (85%), Positives = 120/128 (93%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGP+MRCSFEETVDILLDAAVYAE+D+LRGVTENIMLGQLAPIGTGGCALYLN+ 
Sbjct: 1409 INRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDE 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            ML++AIELQLPSY +GLDFGMTPSRSPI+GTPY EGMMSP+YLLSPNLR SP+ SD  FS
Sbjct: 1469 MLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI-SDAQFS 1527

Query: 3347 PFVGGMGF 3370
            P+VGGM F
Sbjct: 1528 PYVGGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 1799 bits (4659), Expect = 0.0
 Identities = 884/994 (88%), Positives = 940/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFI KDVFMN LMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKP+P+WTGKQVFNLIIPKQINL R SAWH E+ETG +TPGDT V +E+GELL
Sbjct: 572  KIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK LG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 632  SGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETIS AKNEVKNLI+ AQE+ LEPEPGRTMM+SFEN+VNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EF+  +RYEF+ +NW+P+YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVF+AEVQKLE DR QL T+IATTG+NSWP+PVNLKRL+ NAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPGED LS EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
             E++L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 DEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAK+IKTPSLSV+L PE +KTKERAK VQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEED+DFV+SYYEMPDEE++P+KISPWLLRIELNREMMVDKKLSMA+IAE
Sbjct: 1172 WYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+NDEA KG+   +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK E EWMLDTEGVNLLAVM HE+VDA RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1385



 Score =  220 bits (560), Expect = 4e-54
 Identities = 109/128 (85%), Positives = 120/128 (93%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGP+MRCSFEETVDILLDAAVYAE+D+LRGVTENIMLGQLAPIGTGGCALYLN+ 
Sbjct: 1409 INRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDE 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            ML++AIELQLPSY +GLDFGMTPSRSPI+GTPY EGMMSP+YLLSPNLR SP+ SD  FS
Sbjct: 1469 MLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI-SDAQFS 1527

Query: 3347 PFVGGMGF 3370
            P+VGGM F
Sbjct: 1528 PYVGGMAF 1535


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score = 1797 bits (4654), Expect = 0.0
 Identities = 882/994 (88%), Positives = 940/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRP+WTGKQVFNLIIPKQINL+R +AWH ++E G +TPGDT V +E+GELL
Sbjct: 572  KVPAPAILKPRPLWTGKQVFNLIIPKQINLIRTAAWHSDSERGVITPGDTLVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGT+CKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  SGTVCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETIS AKN VK LIR AQ K+LEP+PGRTMMESFEN VNQVLN+ARDDAGSSA
Sbjct: 692  ATMEKINETISNAKNAVKELIRKAQNKELEPKPGRTMMESFENEVNQVLNRARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKKSEFD  ++YE D +NW P YM +
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFKYELDDENWNPTYMYQ 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            +H+DDLK IRE R+VFDAEVQKLE DR QL T+IATTGD+SWPLPVNL+RL+WNAQKTFK
Sbjct: 932  DHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            VD R  SD+HPME VEAVDKLQERLKVVPG+D LS EAQKNATLFF ILLRSTLASKRVL
Sbjct: 992  VDKRRPSDIHPMEAVEAVDKLQERLKVVPGDDPLSVEAQKNATLFFGILLRSTLASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            ++++L REAF+WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 EDYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLS+FL PE +KTKERAKNVQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSIFLIPECNKTKERAKNVQCALEYTTLRSVTQATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEEDVDFV+SYYEMPDEE+SP+KISPWLLRIELNREMMVDKKL+MADIAE
Sbjct: 1172 WYDPDPMSTIIEEDVDFVKSYYEMPDEEISPEKISPWLLRIELNREMMVDKKLNMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+NDEA KG+   +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIKQSKV+KFDE +GFK   EWMLDTEGVNLLAVMC+E VDA RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKQSKVSKFDENEGFKTIEEWMLDTEGVNLLAVMCNENVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1385



 Score =  209 bits (532), Expect = 7e-51
 Identities = 104/128 (81%), Positives = 118/128 (92%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGPLMRCSFEETVDILLDAAVYAE+DYLRGVTENIMLGQLAPIGTG CALYLN++
Sbjct: 1409 INRNDTGPLMRCSFEETVDILLDAAVYAEADYLRGVTENIMLGQLAPIGTGDCALYLNDD 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            ML++AIELQLPSY +GLDFGMTP+RSP++ TPY +GMMSPSYLLSP+LR SP ++D  FS
Sbjct: 1469 MLKNAIELQLPSYMDGLDFGMTPARSPVSVTPYHDGMMSPSYLLSPSLRLSP-TTDAQFS 1527

Query: 3347 PFVGGMGF 3370
            P+V GM F
Sbjct: 1528 PYVSGMPF 1535


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 1792 bits (4641), Expect = 0.0
 Identities = 879/994 (88%), Positives = 937/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVPQP ILKPRP+WTGKQVFNLIIPKQINL R +AWH + + G LT GDT V +E+GELL
Sbjct: 572  KVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
             TMETIN+TISKAKN VKNLI+ AQ+K LEPEPGRTMMESFEN+VNQVLN ARD+AGSSA
Sbjct: 692  KTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMDSVWIESQ LDSLKMKKSEFD  +R+E D +NW P+YML+
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQ 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            E++DDLKTI+E R+VFDAEVQKLE DR QLAT+IAT+GD+SWPLPVNLKRL+WNAQKTFK
Sbjct: 932  EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            VD R  SDMHPME+VEAVDKLQERLKVVPGED LS EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  VDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE +L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL P ++ TKERAKNVQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPM TIIEEDV+FV+SYYEMPDE+++P+KISPWLLRIELNREMMVDKKLSMA +AE
Sbjct: 1172 WYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD+TCIF DDNA+KLILRIRI+NDEA KG+   +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK+ K  K+D+ +GFK+E EWMLDTEGVNLLAVMCHE+VDA RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIE++EVLGIEAVR+ALLDELRVVISFDGSYVNY
Sbjct: 1352 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNY 1385



 Score =  211 bits (538), Expect = 2e-51
 Identities = 103/128 (80%), Positives = 117/128 (91%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGP+MRCSFEETVDILLDAAV+AESDYLRGVTENIMLGQLAPIGTG C+LYLN+ 
Sbjct: 1409 INRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            ML++AIELQLPSY EGL+FGMTP+RSP++GTPY +GMMSP YL SPNLR SP+ +D  FS
Sbjct: 1469 MLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV-TDAQFS 1527

Query: 3347 PFVGGMGF 3370
            P+VGGM F
Sbjct: 1528 PYVGGMAF 1535


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 1792 bits (4641), Expect = 0.0
 Identities = 879/994 (88%), Positives = 937/994 (94%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVPQP ILKPRP+WTGKQVFNLIIPKQINL R +AWH + + G LT GDT V +E+GELL
Sbjct: 572  KVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 691

Query: 903  ATMETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
             TMETIN+TISKAKN VKNLI+ AQ+K LEPEPGRTMMESFEN+VNQVLN ARD+AGSSA
Sbjct: 692  KTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMDSVWIESQ LDSLKMKKSEFD  +R+E D +NW P+YML+
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQ 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            E++DDLKTI+E R+VFDAEVQKLE DR QLAT+IAT+GD+SWPLPVNLKRL+WNAQKTFK
Sbjct: 932  EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            VD R  SDMHPME+VEAVDKLQERLKVVPGED LS EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  VDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE +L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL P ++ TKERAKNVQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPM TIIEEDV+FV+SYYEMPDE+++P+KISPWLLRIELNREMMVDKKLSMA +AE
Sbjct: 1172 WYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDFEADSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD+TCIF DDNA+KLILRIRI+NDEA KG+   +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDATRTTSNH 2882
            AL+GIPDINKVFIK+ K  K+D+ +GFK+E EWMLDTEGVNLLAVMCHE+VDA RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2984
            LIE++EVLGIEAVR+ALLDELRVVISFDGSYVNY
Sbjct: 1352 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNY 1385



 Score =  211 bits (538), Expect = 2e-51
 Identities = 103/128 (80%), Positives = 117/128 (91%), Gaps = 1/128 (0%)
 Frame = +2

Query: 2990 INRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEN 3169
            INRNDTGP+MRCSFEETVDILLDAAV+AESDYLRGVTENIMLGQLAPIGTG C+LYLN+ 
Sbjct: 1409 INRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1468

Query: 3170 MLQHAIELQLPSYAEGLDFGMTPSRSPITGTPY-EGMMSPSYLLSPNLRQSPMSSDVTFS 3346
            ML++AIELQLPSY EGL+FGMTP+RSP++GTPY +GMMSP YL SPNLR SP+ +D  FS
Sbjct: 1469 MLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV-TDAQFS 1527

Query: 3347 PFVGGMGF 3370
            P+VGGM F
Sbjct: 1528 PYVGGMAF 1535