BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00005980
         (3861 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2102   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  2082   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  2080   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  2080   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  2079   0.0  
gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...  2069   0.0  
gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...  2069   0.0  
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]   2069   0.0  
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...  2068   0.0  
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S...  2067   0.0  
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su...  2063   0.0  
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe...  2062   0.0  
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru...  2060   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  2058   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  2058   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  2057   0.0  
gb|EOX90745.1| DNA-directed RNA polymerase II subunit RPB1 isofo...  2056   0.0  
gb|EOX90744.1| DNA-directed RNA polymerase II subunit RPB1 isofo...  2056   0.0  
gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isofo...  2056   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  2051   0.0  

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2102 bits (5445), Expect = 0.0
 Identities = 1031/1143 (90%), Positives = 1093/1143 (95%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKPRP+WTGKQVFNLIIPKQINL+R SAWH E+ETGF+TPGDT+V +E+GELL
Sbjct: 572  KIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            +GTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  AGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK LIRAAQE+QLE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIE+QKLDSLKMKK EFD  ++YE D +NW P YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVFDAEVQKLE DR QL T+IATTGDNSWP+PVNLKRL+WNAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            VD+R  SDMHPMEIVEAVDKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  VDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L P++SKTKERAKNVQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEEDVDFV+SYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPMSTIIEEDVDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+NDEAPKGEL+ +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK E EWMLDTEGVNLLAVMCHE+VD+ RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKSGKVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGP+MRCSFEETVDILLDAAVYAE+D+LRGVTENIMLGQLAPIGTG CALYLN+ MLQ
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQ 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
            HAIELQLPSY+EG ++GMTP RSP TGTPYH+GMMSP+ L SPNLR SPI TDA FSP+V
Sbjct: 1472 HAIELQLPSYMEGLDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPI-TDAQFSPYV 1530

Query: 3420 GGM 3428
            GGM
Sbjct: 1531 GGM 1533


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score = 2082 bits (5395), Expect = 0.0
 Identities = 1016/1143 (88%), Positives = 1083/1143 (94%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMN LMWW+DFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNTLMWWQDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKPRPIWTGKQVFNLIIPKQINLIRFSAWH ETETGF+TPGDT V +E+GELL
Sbjct: 572  KIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSETETGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK+LG+ SGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADA
Sbjct: 632  SGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK LI+ AQ+K LE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISKAKNEVKELIKQAQDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQKTFK
Sbjct: 932  EHVDDLKTIREFRNVFEAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMM+DKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILRIRI ND+APKGE++ +SAEDDVFLKK+ G+MLTEM
Sbjct: 1232 KINREFDDDLSCIFNDDNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFD+ +GFKA+ EWMLDTEGVNLLAVMCHE+VD+TRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKHGKVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGPLMRCSFEETVDILLDAAVYAE+D LRGVTENIMLGQLAPIGTGGCALYLN+ MLQ
Sbjct: 1412 NDTGPLMRCSFEETVDILLDAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
             AIELQLPSYVEG ++GMTP RSP +GTPYHEGMMSPS L SPN+R SPI+TDA+FSP+V
Sbjct: 1472 QAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYV 1531

Query: 3420 GGM 3428
            G M
Sbjct: 1532 GHM 1534


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 2080 bits (5390), Expect = 0.0
 Identities = 1015/1143 (88%), Positives = 1082/1143 (94%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HL+LGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLDLGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWW+DFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKPRPIWTGKQVFNLIIPKQINLIRFSAWH ETETGF+TPGDT V +E+GELL
Sbjct: 572  KIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSETETGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK+LG+ SGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADA
Sbjct: 632  SGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK LI+ A E  LE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISKAKNEVKELIKQAHENHLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQKTFK
Sbjct: 932  EHVDDLKTIREFRNVFEAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMM+DKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILRIRI ND+APKGE++ +SAEDDVFLKK+ G+MLTEM
Sbjct: 1232 KINREFDDDLSCIFNDDNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFD+ +GFKA+ EWMLDTEGVNLLAVMCHE+VD+TRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKHGKVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGPLMRCSFEETVDILLDAAVYAE+D LRGVTENIMLGQLAPIGTGGCALYLN+ MLQ
Sbjct: 1412 NDTGPLMRCSFEETVDILLDAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
             AIELQLPSYVEG ++GMTP RSP +GTPYHEGMMSPS L SPN+R SPI+TDA+FSP+V
Sbjct: 1472 QAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYV 1531

Query: 3420 GGM 3428
            G M
Sbjct: 1532 GHM 1534


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 2080 bits (5389), Expect = 0.0
 Identities = 1020/1143 (89%), Positives = 1082/1143 (94%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRPIWTGKQVFNLIIPK INLIRFSAWH E ETGF+TPGDT V +E+GELL
Sbjct: 572  KVPAPAILKPRPIWTGKQVFNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETIS AKNEVK LI+ A +K LE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISTAKNEVKELIKQAHDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFDT +RYE D +NW P+YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDTVFRYELDDENWRPNYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVF+AEVQKLE DR QL T+IATTGDN+WP+PVNLKRL+WNAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE+V PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDVDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKF++  GFK + EWMLDTEGVNLLAVMCHE+VD+TRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKYGKVNKFEDNDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR+ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLN+ MLQ
Sbjct: 1412 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
             AIELQLPSYVEG ++GMTP RSP +GTPYHEGMMSPS L SPN+R SPI TDA FSP+V
Sbjct: 1472 QAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPI-TDAQFSPYV 1530

Query: 3420 GGM 3428
            GGM
Sbjct: 1531 GGM 1533


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 2079 bits (5387), Expect = 0.0
 Identities = 1025/1143 (89%), Positives = 1087/1143 (95%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRYLKKS DHHLELGYKVERHLND
Sbjct: 395  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSGDHHLELGYKVERHLND 454

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 455  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 514

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 515  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 574

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKPRP+WTGKQVFNLIIPKQINLIR+SAWH E+E+GF+TPGDT V +ERGELL
Sbjct: 575  KIPAPAILKPRPLWTGKQVFNLIIPKQINLIRYSAWHSESESGFITPGDTCVRIERGELL 634

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+SSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADA
Sbjct: 635  SGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADA 694

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK LI+AAQEKQLE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 695  ATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 754

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF  RTLPHFTKDDYG
Sbjct: 755  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYG 814

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 815  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 874

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMK++EF+  Y+YE D +NW P YML 
Sbjct: 875  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLP 934

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREF+NVFDAEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQK FK
Sbjct: 935  EHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFK 994

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            VD+R  SDMHPMEIVEAVDKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 995  VDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVL 1054

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L REAF+WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1055 KEYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1114

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L  E++KTKE+AKNVQC LEYT LRSVT ATEV
Sbjct: 1115 NVTLGVPRLREIINVAKKIKTPSLSVYLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEV 1174

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEEDVDFVRSYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1175 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAE 1234

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+NDEAPKGEL+ +S+EDDVFLKK+  +MLTEM
Sbjct: 1235 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDESSEDDVFLKKIESNMLTEM 1294

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  K+NKFDE +GFK E EWMLDTEGVNLLAVMC+EEVD+TRTTSNH
Sbjct: 1295 ALRGIPDINKVFIKSGKINKFDENEGFKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNH 1354

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV++VLGIEAVR+ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1355 LIEVIQVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1414

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGP+MRCSFEETVDILLDAAVYAE+D+LRGVTENIMLGQLAPIGTG CALYLN+ MLQ
Sbjct: 1415 NDTGPMMRCSFEETVDILLDAAVYAEADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQ 1474

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
             AIELQLPSY+EG ++GMTP RSP TGTPYHEGMMSP +L SPN+R SPI TDA FSP+V
Sbjct: 1475 QAIELQLPSYMEGMDFGMTPSRSPMTGTPYHEGMMSPYLL-SPNMRSSPI-TDAQFSPYV 1532

Query: 3420 GGM 3428
            GGM
Sbjct: 1533 GGM 1535


>gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1861

 Score = 2069 bits (5361), Expect = 0.0
 Identities = 1019/1144 (89%), Positives = 1079/1144 (94%), Gaps = 2/1144 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAIL+PRPIWTGKQVFNLIIPK INLIRFSAWH ETE+GF+TPGDT V +E+GELL
Sbjct: 572  KVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETI  AKNEVK LI+ AQEK LEPEPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK+EFD  +RYE D +NW P YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            +HVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDN+WP+PVNLKRL+WNAQKTFK
Sbjct: 932  DHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEM
Sbjct: 1232 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK + EWMLDTEGVNLLAVMCHE+VDSTRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKYGKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGC LYLN+ MLQ
Sbjct: 1412 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQ 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHE-GMMSPSILFSPNLRHSPISTDATFSPF 3416
             AIELQLPSYVEG +YGMTP RSP + TPY + GMMSP  + SPN R SPI TDA FSP+
Sbjct: 1472 QAIELQLPSYVEGLDYGMTPARSPMSATPYRDGGMMSP--MLSPNFRASPI-TDAQFSPY 1528

Query: 3417 VGGM 3428
            VGGM
Sbjct: 1529 VGGM 1532


>gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 2040

 Score = 2069 bits (5361), Expect = 0.0
 Identities = 1019/1144 (89%), Positives = 1079/1144 (94%), Gaps = 2/1144 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAIL+PRPIWTGKQVFNLIIPK INLIRFSAWH ETE+GF+TPGDT V +E+GELL
Sbjct: 572  KVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETI  AKNEVK LI+ AQEK LEPEPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK+EFD  +RYE D +NW P YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            +HVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDN+WP+PVNLKRL+WNAQKTFK
Sbjct: 932  DHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEM
Sbjct: 1232 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK + EWMLDTEGVNLLAVMCHE+VDSTRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKYGKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGC LYLN+ MLQ
Sbjct: 1412 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQ 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHE-GMMSPSILFSPNLRHSPISTDATFSPF 3416
             AIELQLPSYVEG +YGMTP RSP + TPY + GMMSP  + SPN R SPI TDA FSP+
Sbjct: 1472 QAIELQLPSYVEGLDYGMTPARSPMSATPYRDGGMMSP--MLSPNFRASPI-TDAQFSPY 1528

Query: 3417 VGGM 3428
            VGGM
Sbjct: 1529 VGGM 1532


>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score = 2069 bits (5361), Expect = 0.0
 Identities = 1019/1144 (89%), Positives = 1079/1144 (94%), Gaps = 2/1144 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAIL+PRPIWTGKQVFNLIIPK INLIRFSAWH ETE+GF+TPGDT V +E+GELL
Sbjct: 572  KVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETI  AKNEVK LI+ AQEK LEPEPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK+EFD  +RYE D +NW P YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            +HVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDN+WP+PVNLKRL+WNAQKTFK
Sbjct: 932  DHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEEDV+FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEM
Sbjct: 1232 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK + EWMLDTEGVNLLAVMCHE+VDSTRTTSNH
Sbjct: 1292 ALRGIPDINKVFIKYGKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGC LYLN+ MLQ
Sbjct: 1412 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQ 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHE-GMMSPSILFSPNLRHSPISTDATFSPF 3416
             AIELQLPSYVEG +YGMTP RSP + TPY + GMMSP  + SPN R SPI TDA FSP+
Sbjct: 1472 QAIELQLPSYVEGLDYGMTPARSPMSATPYRDGGMMSP--MLSPNFRASPI-TDAQFSPY 1528

Query: 3417 VGGM 3428
            VGGM
Sbjct: 1529 VGGM 1532


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score = 2068 bits (5359), Expect = 0.0
 Identities = 1010/1143 (88%), Positives = 1078/1143 (94%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 391  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 450

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 451  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 510

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWW+DFDG
Sbjct: 511  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDG 570

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P P ILKPRPIWTGKQVFNLIIPKQINLIRFSAWH E E GF+TPGDT V +E+GELL
Sbjct: 571  KIPAPTILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGELL 630

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK+LG+ SGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 631  SGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 690

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            +TME IN+TISKAKN VK LI+ A EKQLE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 691  STMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 750

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 751  QNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 810

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 811  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 870

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML 
Sbjct: 871  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDDENWRPNYMLP 930

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL ++I TTGDNSWP+PVNLKRL+WNAQKTFK
Sbjct: 931  EHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQKTFK 990

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 991  IDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1050

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1051 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1110

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L P++++ KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1111 NVTLGVPRLREIINVAKKIKTPSLSVYLKPQVNQKKELAKNVQCALEYTTLRSVTHATEI 1170

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEED +FV+SYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1171 WYDPDPLGTIIEEDTEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1230

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILRIRI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEM
Sbjct: 1231 KINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1290

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK+ KVN F ++ GFKA  EWMLDTEGVNLLAVMCHE+VD+TRTTSNH
Sbjct: 1291 ALRGIPDINKVFIKEGKVNTFYQDDGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1350

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1351 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1410

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGPLMRCSFEETVDILLDAAVYAESD+LRGVTENIMLGQLAPIGTGGCALYLN+ MLQ
Sbjct: 1411 NDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1470

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
             AIELQLPSYVEG ++GMTP RSP TGTPYHEGMMSPS L SPN+R SPI+TDA+FSP+V
Sbjct: 1471 QAIELQLPSYVEGLDFGMTPARSPITGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYV 1530

Query: 3420 GGM 3428
            G M
Sbjct: 1531 GHM 1533


>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
            gi|241940227|gb|EES13372.1| hypothetical protein
            SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score = 2067 bits (5355), Expect = 0.0
 Identities = 1008/1143 (88%), Positives = 1082/1143 (94%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 391  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 450

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 451  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 510

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWW+DFDG
Sbjct: 511  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDG 570

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKPRPIWTGKQVFNLIIPKQINLIRFSAWH E E GF+TPGDT V +E+GELL
Sbjct: 571  KIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGELL 630

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK+LG+ +GSLIH+IWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 631  SGTLCKKSLGTGTGSLIHIIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 690

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            +TM+ IN+TI KAK+EVK LI+ A EKQLE EPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 691  STMQTINDTICKAKDEVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA 750

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 751  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 810

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 811  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 870

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML 
Sbjct: 871  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNLFRYELDDENWRPNYMLP 930

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL T+IATTGDNSWP+PVNLKRL+WNAQKTF+
Sbjct: 931  EHVDDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFR 990

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEAVDKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 991  IDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDPMSIEAQKNATLFFNILLRSTFASKRVL 1050

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1051 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1110

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSV+L PE+++ KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1111 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNQKKELAKNVQCALEYTTLRSVTHATEI 1170

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEED +FV+SYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIA+
Sbjct: 1171 WYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAD 1230

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILRIRI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEM
Sbjct: 1231 KINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1290

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK+ KVN F +++GFKA  EWMLDTEGVNLLAVMCHE+VD+TRTTSNH
Sbjct: 1291 ALRGIPDINKVFIKEGKVNTFYQDEGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1350

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1351 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1410

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGPLMRCSFEETVDILLDAAVYAESD+LRGVTENIMLGQLAPIGTGGCALYLN+ MLQ
Sbjct: 1411 NDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1470

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
             AIELQLPSYVEG ++GMTP RSP +GTPYHEGMMSPS L SPN+R SPI+TDA+FSP+V
Sbjct: 1471 QAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYV 1530

Query: 3420 GGM 3428
            G M
Sbjct: 1531 GHM 1533


>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Brachypodium distachyon]
          Length = 1862

 Score = 2063 bits (5346), Expect = 0.0
 Identities = 1017/1145 (88%), Positives = 1080/1145 (94%), Gaps = 3/1145 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLND
Sbjct: 393  PYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLND 452

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 453  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 512

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDG
Sbjct: 513  AEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDG 572

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRPIWTGKQVFNLIIPK INLIRFSAWH E+E+GF+TPGDT V +E+GELL
Sbjct: 573  KVPAPAILKPRPIWTGKQVFNLIIPKLINLIRFSAWHAESESGFITPGDTMVRIEKGELL 632

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+ +GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA
Sbjct: 633  SGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 692

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            +TME INETISKAK+EV  LI+ AQ+K LEPEPGRTMMESFENRVNQVLNKARDDAGSSA
Sbjct: 693  STMEKINETISKAKSEVTELIKQAQDKLLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 752

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTK+DYG
Sbjct: 753  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKNDYG 812

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 813  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 872

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIE+QKLDSLKMKK+EFD  YRYE D +NW P YML 
Sbjct: 873  GTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKAEFDNVYRYELDDENWRPTYMLP 932

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHVDDLKTIREFRNVF+AEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQKTFK
Sbjct: 933  EHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFK 992

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D+R  SDMHPMEIVEA+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVL
Sbjct: 993  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1052

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE++L +E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1053 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1112

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+
Sbjct: 1113 NVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEI 1172

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDP+ TIIEED+DFV+SYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1173 WYDPDPLGTIIEEDMDFVKSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1232

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD++CIF DDNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEM
Sbjct: 1233 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1292

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  K+NKFDE  GFK + EWMLDTEGVNLLAVMCHE+VD+TRTTSNH
Sbjct: 1293 ALRGIPDINKVFIKYGKINKFDENDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1352

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1353 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1412

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGC LYLN+ MLQ
Sbjct: 1413 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQ 1472

Query: 3243 HAIELQLPSYVEGFEY-GMTPVR-SPTGTPYHE-GMMSPSILFSPNLRHSPISTDATFSP 3413
             AIELQLPSYVEG EY GMTP R SP+GTPYH+ GMMSP  + SPN R SPIS DA FSP
Sbjct: 1473 QAIELQLPSYVEGLEYIGMTPARASPSGTPYHDGGMMSP--MLSPNFRSSPIS-DAQFSP 1529

Query: 3414 FVGGM 3428
            +VGGM
Sbjct: 1530 YVGGM 1534


>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 2062 bits (5343), Expect = 0.0
 Identities = 1016/1143 (88%), Positives = 1079/1143 (94%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+ GPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVENGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRP+WTGKQVFNLIIPKQINL R SAWH E E+G +TPGDT V +E+GELL
Sbjct: 572  KVPAPAILKPRPLWTGKQVFNLIIPKQINLQRTSAWHSEAESGNITPGDTFVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            +GTLCKK LG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 632  AGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK+LI  AQ KQLE EPGRTMM+SFEN+VNQVLN+ARDDAGSSA
Sbjct: 692  ATMEKINETISKAKNEVKDLISKAQSKQLEAEPGRTMMDSFENKVNQVLNRARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKKSEFD T+ YE D +NW PDYML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKTFSYELDDENWNPDYMLH 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVFDAEVQKLE DR QL T+IA TGDNSWPLPVNLKRL+WNAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFDAEVQKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPG+D LS EAQKNATLFF+ILLRST ASKRVL
Sbjct: 992  IDFRRTSDMHPMEIVEAIDKLQERLKVVPGDDLLSVEAQKNATLFFSILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
             E++L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 DEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAK+IKTPSLSV+L PE +KTKERAKNVQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEEDVDFV SYYEMPDEEV+PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPMSTIIEEDVDFVNSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+N EAPKGEL  +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNAEAPKGELVDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFD  +GFKAE EWMLDTEGVNLLAV+CH++VD+ RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKHGKVNKFDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIE++E+LGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEILEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGP+MRCSFEETVDILLDAAV+AE+DYLRGVTENIMLGQLAPIGTG CALYLN+ ML+
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLK 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
            +AIELQLPSY++G ++GMTP RSP +GTPYHEGMMSP+ L SPNLR SPIS DA FSP+V
Sbjct: 1472 NAIELQLPSYMDGLDFGMTPSRSPVSGTPYHEGMMSPNYLLSPNLRLSPIS-DAQFSPYV 1530

Query: 3420 GGM 3428
            GGM
Sbjct: 1531 GGM 1533


>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
          Length = 1866

 Score = 2060 bits (5336), Expect = 0.0
 Identities = 1021/1163 (87%), Positives = 1083/1163 (93%), Gaps = 21/1163 (1%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK------- 161
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK       
Sbjct: 387  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKARLPILL 446

Query: 162  -------------VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 302
                         VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY
Sbjct: 447  LLLLFLGPWSGSVVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 506

Query: 303  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRD 482
            NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRD
Sbjct: 507  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 566

Query: 483  TFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQET 662
            TFIEKDVFMNILMWWEDFDGKVP PAILKPRP+WTGKQVFNLIIPKQINL R SAWH E+
Sbjct: 567  TFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLNRTSAWHAES 626

Query: 663  ETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLV 842
            E+G++TPGDT V +E+GELLSGTLCKKTLG+SSGSLIHVIWEEVGPDAARKFLGHTQWLV
Sbjct: 627  ESGYITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLV 686

Query: 843  NYWLLQNGFSIGIGDTIADAATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMES 1022
            NYWLLQNGFSIGIGDTIADA+TME INETIS+AKN+VK LIR AQ K+LE EPGRTMMES
Sbjct: 687  NYWLLQNGFSIGIGDTIADASTMEKINETISRAKNDVKELIRKAQAKELEAEPGRTMMES 746

Query: 1023 FENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 1202
            FEN+VNQVLNKARDDAGSSAQ+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK
Sbjct: 747  FENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 806

Query: 1203 RIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 1382
            RIP+GF+ RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE
Sbjct: 807  RIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 866

Query: 1383 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEF 1562
            TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKK+EF
Sbjct: 867  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKTEF 926

Query: 1563 DTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDN 1742
            +  +RYEFD + W P YML EHV+DLKTIREFRNVFDAEVQKLE DR QL T+IATTGDN
Sbjct: 927  ERVFRYEFDNETWNPTYMLPEHVEDLKTIREFRNVFDAEVQKLESDRLQLGTEIATTGDN 986

Query: 1743 SWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQK 1922
            SWPLPVNLKRL+ NAQKTFK+D R  SDMHPMEIVEA+DKLQERLKVVPGED LS EAQK
Sbjct: 987  SWPLPVNLKRLIQNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQK 1046

Query: 1923 NATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 2102
            NATLFFNILLRST ASKRVL+E++L RE FEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 1047 NATLFFNILLRSTFASKRVLEEYRLTREGFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1106

Query: 2103 GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAK 2282
            GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVFL PE SKTKERAK
Sbjct: 1107 GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVFLKPEASKTKERAK 1166

Query: 2283 NVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLR 2462
             VQC LEYT LRSVT ATEVWYDPDPMSTII+EDVDFVRSYYEMPDEE++PDKISPWLLR
Sbjct: 1167 TVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVRSYYEMPDEEINPDKISPWLLR 1226

Query: 2463 IELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEG 2642
            IELNREMMVDKKLSMADIAEKIN+EF DD+TCIF DDNAEKLILRIRI+NDEAPKG+L  
Sbjct: 1227 IELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGDLTD 1286

Query: 2643 DSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGV 2822
            ++AEDDVFLKK+  +MLTEM+L+GIPDINKVFIK  KVNKFDE  GFK E EWMLDTEGV
Sbjct: 1287 EAAEDDVFLKKIESNMLTEMSLRGIPDINKVFIKHGKVNKFDENDGFKPENEWMLDTEGV 1346

Query: 2823 NLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAIL 3002
            NLLAV+CHE+VD+ RTTSNHLIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAIL
Sbjct: 1347 NLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAIL 1406

Query: 3003 CDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLG 3182
            CDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+DYLRGVTENIMLG
Sbjct: 1407 CDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLG 1466

Query: 3183 QLAPIGTGGCALYLNETMLQHAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSIL 3359
            QLAPIGTGGCALYLN+ ML++AIELQLPSY++G ++GMTP RSP +GTPYHEGMMSP  L
Sbjct: 1467 QLAPIGTGGCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTPYHEGMMSPGYL 1526

Query: 3360 FSPNLRHSPISTDATFSPFVGGM 3428
             SPNLR SPIS DA FSP+VGGM
Sbjct: 1527 LSPNLRLSPIS-DAQFSPYVGGM 1548


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 2058 bits (5333), Expect = 0.0
 Identities = 1013/1143 (88%), Positives = 1082/1143 (94%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFI KDVFMN LMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKP+P+WTGKQVFNLIIPKQINL R SAWH E+ETG +TPGDT V +E+GELL
Sbjct: 572  KIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK LG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 632  SGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETIS AKNEVKNLI+ AQE+ LEPEPGRTMM+SFEN+VNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EF+  +RYEF+ +NW+P+YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVF+AEVQKLE DR QL T+IATTG+NSWP+PVNLKRL+ NAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPGED LS EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
             E++L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 DEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAK+IKTPSLSV+L PE +KTKERAK VQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEED+DFV+SYYEMPDEE++P+KISPWLLRIELNREMMVDKKLSMA+IAE
Sbjct: 1172 WYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+NDEAPKGEL  +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK E EWMLDTEGVNLLAVM HE+VD+ RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGP+MRCSFEETVDILLDAAVYAE+D+LRGVTENIMLGQLAPIGTGGCALYLN+ ML+
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLK 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
            +AIELQLPSY++G ++GMTP RSP +GTPYHEGMMSP+ L SPNLR SPIS DA FSP+V
Sbjct: 1472 NAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPIS-DAQFSPYV 1530

Query: 3420 GGM 3428
            GGM
Sbjct: 1531 GGM 1533


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 2058 bits (5333), Expect = 0.0
 Identities = 1013/1143 (88%), Positives = 1082/1143 (94%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFI KDVFMN LMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            K+P PAILKP+P+WTGKQVFNLIIPKQINL R SAWH E+ETG +TPGDT V +E+GELL
Sbjct: 572  KIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK LG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 632  SGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETIS AKNEVKNLI+ AQE+ LEPEPGRTMM+SFEN+VNQVLNKARDDAGSSA
Sbjct: 692  ATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EF+  +RYEF+ +NW+P+YML 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLP 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVF+AEVQKLE DR QL T+IATTG+NSWP+PVNLKRL+ NAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERLKVVPGED LS EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  IDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
             E++L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 DEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAK+IKTPSLSV+L PE +KTKERAK VQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMSTIIEED+DFV+SYYEMPDEE++P+KISPWLLRIELNREMMVDKKLSMA+IAE
Sbjct: 1172 WYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KINLEF DD+TCIF DDNAEKLILRIRI+NDEAPKGEL  +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFDE +GFK E EWMLDTEGVNLLAVM HE+VD+ RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGP+MRCSFEETVDILLDAAVYAE+D+LRGVTENIMLGQLAPIGTGGCALYLN+ ML+
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLK 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
            +AIELQLPSY++G ++GMTP RSP +GTPYHEGMMSP+ L SPNLR SPIS DA FSP+V
Sbjct: 1472 NAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPIS-DAQFSPYV 1530

Query: 3420 GGM 3428
            GGM
Sbjct: 1531 GGM 1533


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 2057 bits (5329), Expect = 0.0
 Identities = 1008/1143 (88%), Positives = 1079/1143 (94%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 390  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 449

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 450  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 509

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 510  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 569

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRP+WTGKQVFNLIIPKQINL R SAWH E+ETG +TPGDT V +E+GELL
Sbjct: 570  KVPAPAILKPRPLWTGKQVFNLIIPKQINLQRTSAWHSESETGNITPGDTHVRIEKGELL 629

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK LG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 630  SGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 689

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAKNEVK LI  AQ K LEPEPGRTMM+SFEN+VNQVLN+ARDDAGSSA
Sbjct: 690  ATMEKINETISKAKNEVKELISKAQSKSLEPEPGRTMMDSFENKVNQVLNRARDDAGSSA 749

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYG
Sbjct: 750  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 809

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 810  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 869

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD T+ Y FD +NW PDYML 
Sbjct: 870  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFDKTFAYVFDDENWNPDYMLP 929

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            EHV+DLKTIREFRNVFDAEV KLE DR QL T+IA TGDNSWPLPVNLKRL+WNAQKTFK
Sbjct: 930  EHVEDLKTIREFRNVFDAEVSKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFK 989

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            +D R  SDMHPMEIVEA+DKLQERL+VVPG+D LS EAQKNATLFFNILLRST ASKRVL
Sbjct: 990  IDFRRTSDMHPMEIVEAIDKLQERLRVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVL 1049

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            +E++L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1050 EEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1109

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAK+IKTPSLSV+L PE +KTKERAKNVQC LEYT LRSVT ATEV
Sbjct: 1110 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEV 1169

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPMST+IEED+DFVRSYYEMPDEEV+PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1170 WYDPDPMSTLIEEDLDFVRSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAE 1229

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KINLEF  D+TCIF DDNAEKLILRIRI+N+E PKG+ + +SAEDDVFLKK+  +MLTEM
Sbjct: 1230 KINLEFDGDLTCIFNDDNAEKLILRIRIMNEETPKGDSQDESAEDDVFLKKIESNMLTEM 1289

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK  KVNKFD+ +GFKAE EWMLDTEGVNLLAV+CH++VD+ RTTSNH
Sbjct: 1290 ALRGIPDINKVFIKHGKVNKFDQNEGFKAEQEWMLDTEGVNLLAVLCHDDVDAKRTTSNH 1349

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIE++EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1350 LIEIIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1409

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGP+MRCSFEETVDILLDA+V+AE+D+LRGVTENIMLGQLAPIGTG CALYLN+ ML+
Sbjct: 1410 NDTGPMMRCSFEETVDILLDASVFAETDHLRGVTENIMLGQLAPIGTGDCALYLNDEMLK 1469

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
            +AIELQLPSYV+G ++GMTP RSP +GTP+ +GMMSP+ L SPN+R SPIS DA FSP+V
Sbjct: 1470 NAIELQLPSYVDGLDFGMTPSRSPVSGTPFRDGMMSPNYLLSPNMRMSPIS-DAQFSPYV 1528

Query: 3420 GGM 3428
            GGM
Sbjct: 1529 GGM 1531


>gb|EOX90745.1| DNA-directed RNA polymerase II subunit RPB1 isoform 5 [Theobroma
            cacao]
          Length = 1512

 Score = 2056 bits (5327), Expect = 0.0
 Identities = 1014/1144 (88%), Positives = 1081/1144 (94%), Gaps = 2/1144 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 42   PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 101

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRI+IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 102  GDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 161

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 162  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 221

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRP+WTGKQVFNLIIPKQINL+R SAWH ETETGF+TPGDT+V +E+GELL
Sbjct: 222  KVPAPAILKPRPLWTGKQVFNLIIPKQINLLRNSAWHSETETGFITPGDTQVRIEKGELL 281

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK LG+SSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 282  SGTLCKKALGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 341

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAK EVKNLI  AQ K LEPEPGRTMMESFEN+VNQVLNKARDDAG+SA
Sbjct: 342  ATMEKINETISKAKEEVKNLIVKAQNKDLEPEPGRTMMESFENKVNQVLNKARDDAGNSA 401

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 402  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 461

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 462  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 521

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEP-DYML 1619
            GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFD  +RY  D ++W P  YML
Sbjct: 522  GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFRYNIDDESWNPTSYML 581

Query: 1620 KEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTF 1799
             EH++DL+TI+E R+VF+AEVQKL+ DR QL T+IA TGD++WPLPVNLKRL+WNAQKTF
Sbjct: 582  PEHIEDLRTIQELRDVFEAEVQKLDADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTF 641

Query: 1800 KVDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRV 1979
            KVD R  SD+HP+EIV++VDKLQERLKVVPG D LS EAQKNATLFF+ILLRSTLASKRV
Sbjct: 642  KVDFRRVSDLHPVEIVDSVDKLQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRV 701

Query: 1980 LKEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 2159
            L+E++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA
Sbjct: 702  LQEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 761

Query: 2160 KNVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATE 2339
            KNVTLGVPRLREIINVAKKIKTPSLSV+L+PE SKTKE+AKNVQC LEYT LRSVTHATE
Sbjct: 762  KNVTLGVPRLREIINVAKKIKTPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATE 821

Query: 2340 VWYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIA 2519
            VWYDPDP STIIEED+DFV+SYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIA
Sbjct: 822  VWYDPDPTSTIIEEDIDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIA 881

Query: 2520 EKINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTE 2699
            EKINLEF DD+TCIF DDNAEKLILRIRI+NDE PKGEL  +SAEDDVFLKK+  +MLTE
Sbjct: 882  EKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTE 941

Query: 2700 MALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSN 2879
            MAL+GIPDINKVFIK SK +KFDE  G+K   EW+LDTEGVNLLAVMCHE+VD+ RTTSN
Sbjct: 942  MALRGIPDINKVFIKHSKASKFDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSN 1001

Query: 2880 HLIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 3059
            HLIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN
Sbjct: 1002 HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1061

Query: 3060 RNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETML 3239
            RNDTGP+MRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTG CALYLN+ ML
Sbjct: 1062 RNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEML 1121

Query: 3240 QHAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPF 3416
            ++AIELQLPSY+EG E+GMTP RSP +GTPYHEGMMSPS L SPNLR SPI TDA FSP+
Sbjct: 1122 KNAIELQLPSYMEGLEFGMTPARSPVSGTPYHEGMMSPSYLLSPNLRLSPI-TDAQFSPY 1180

Query: 3417 VGGM 3428
            VGGM
Sbjct: 1181 VGGM 1184


>gb|EOX90744.1| DNA-directed RNA polymerase II subunit RPB1 isoform 4 [Theobroma
            cacao]
          Length = 1511

 Score = 2056 bits (5327), Expect = 0.0
 Identities = 1014/1144 (88%), Positives = 1081/1144 (94%), Gaps = 2/1144 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 42   PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 101

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRI+IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 102  GDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 161

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 162  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 221

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRP+WTGKQVFNLIIPKQINL+R SAWH ETETGF+TPGDT+V +E+GELL
Sbjct: 222  KVPAPAILKPRPLWTGKQVFNLIIPKQINLLRNSAWHSETETGFITPGDTQVRIEKGELL 281

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK LG+SSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 282  SGTLCKKALGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 341

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAK EVKNLI  AQ K LEPEPGRTMMESFEN+VNQVLNKARDDAG+SA
Sbjct: 342  ATMEKINETISKAKEEVKNLIVKAQNKDLEPEPGRTMMESFENKVNQVLNKARDDAGNSA 401

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 402  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 461

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 462  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 521

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEP-DYML 1619
            GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFD  +RY  D ++W P  YML
Sbjct: 522  GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFRYNIDDESWNPTSYML 581

Query: 1620 KEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTF 1799
             EH++DL+TI+E R+VF+AEVQKL+ DR QL T+IA TGD++WPLPVNLKRL+WNAQKTF
Sbjct: 582  PEHIEDLRTIQELRDVFEAEVQKLDADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTF 641

Query: 1800 KVDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRV 1979
            KVD R  SD+HP+EIV++VDKLQERLKVVPG D LS EAQKNATLFF+ILLRSTLASKRV
Sbjct: 642  KVDFRRVSDLHPVEIVDSVDKLQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRV 701

Query: 1980 LKEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 2159
            L+E++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA
Sbjct: 702  LQEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 761

Query: 2160 KNVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATE 2339
            KNVTLGVPRLREIINVAKKIKTPSLSV+L+PE SKTKE+AKNVQC LEYT LRSVTHATE
Sbjct: 762  KNVTLGVPRLREIINVAKKIKTPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATE 821

Query: 2340 VWYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIA 2519
            VWYDPDP STIIEED+DFV+SYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIA
Sbjct: 822  VWYDPDPTSTIIEEDIDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIA 881

Query: 2520 EKINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTE 2699
            EKINLEF DD+TCIF DDNAEKLILRIRI+NDE PKGEL  +SAEDDVFLKK+  +MLTE
Sbjct: 882  EKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTE 941

Query: 2700 MALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSN 2879
            MAL+GIPDINKVFIK SK +KFDE  G+K   EW+LDTEGVNLLAVMCHE+VD+ RTTSN
Sbjct: 942  MALRGIPDINKVFIKHSKASKFDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSN 1001

Query: 2880 HLIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 3059
            HLIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN
Sbjct: 1002 HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1061

Query: 3060 RNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETML 3239
            RNDTGP+MRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTG CALYLN+ ML
Sbjct: 1062 RNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEML 1121

Query: 3240 QHAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPF 3416
            ++AIELQLPSY+EG E+GMTP RSP +GTPYHEGMMSPS L SPNLR SPI TDA FSP+
Sbjct: 1122 KNAIELQLPSYMEGLEFGMTPARSPVSGTPYHEGMMSPSYLLSPNLRLSPI-TDAQFSPY 1180

Query: 3417 VGGM 3428
            VGGM
Sbjct: 1181 VGGM 1184


>gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
            cacao] gi|508698846|gb|EOX90742.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
          Length = 1861

 Score = 2056 bits (5327), Expect = 0.0
 Identities = 1014/1144 (88%), Positives = 1081/1144 (94%), Gaps = 2/1144 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRI+IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVP PAILKPRP+WTGKQVFNLIIPKQINL+R SAWH ETETGF+TPGDT+V +E+GELL
Sbjct: 572  KVPAPAILKPRPLWTGKQVFNLIIPKQINLLRNSAWHSETETGFITPGDTQVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKK LG+SSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 632  SGTLCKKALGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
            ATME INETISKAK EVKNLI  AQ K LEPEPGRTMMESFEN+VNQVLNKARDDAG+SA
Sbjct: 692  ATMEKINETISKAKEEVKNLIVKAQNKDLEPEPGRTMMESFENKVNQVLNKARDDAGNSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEP-DYML 1619
            GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFD  +RY  D ++W P  YML
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFRYNIDDESWNPTSYML 931

Query: 1620 KEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTF 1799
             EH++DL+TI+E R+VF+AEVQKL+ DR QL T+IA TGD++WPLPVNLKRL+WNAQKTF
Sbjct: 932  PEHIEDLRTIQELRDVFEAEVQKLDADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTF 991

Query: 1800 KVDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRV 1979
            KVD R  SD+HP+EIV++VDKLQERLKVVPG D LS EAQKNATLFF+ILLRSTLASKRV
Sbjct: 992  KVDFRRVSDLHPVEIVDSVDKLQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRV 1051

Query: 1980 LKEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 2159
            L+E++L +EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA
Sbjct: 1052 LQEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1111

Query: 2160 KNVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATE 2339
            KNVTLGVPRLREIINVAKKIKTPSLSV+L+PE SKTKE+AKNVQC LEYT LRSVTHATE
Sbjct: 1112 KNVTLGVPRLREIINVAKKIKTPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATE 1171

Query: 2340 VWYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIA 2519
            VWYDPDP STIIEED+DFV+SYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIA
Sbjct: 1172 VWYDPDPTSTIIEEDIDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIA 1231

Query: 2520 EKINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTE 2699
            EKINLEF DD+TCIF DDNAEKLILRIRI+NDE PKGEL  +SAEDDVFLKK+  +MLTE
Sbjct: 1232 EKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTE 1291

Query: 2700 MALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSN 2879
            MAL+GIPDINKVFIK SK +KFDE  G+K   EW+LDTEGVNLLAVMCHE+VD+ RTTSN
Sbjct: 1292 MALRGIPDINKVFIKHSKASKFDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSN 1351

Query: 2880 HLIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 3059
            HLIEV+EVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN
Sbjct: 1352 HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1411

Query: 3060 RNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETML 3239
            RNDTGP+MRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTG CALYLN+ ML
Sbjct: 1412 RNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEML 1471

Query: 3240 QHAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPF 3416
            ++AIELQLPSY+EG E+GMTP RSP +GTPYHEGMMSPS L SPNLR SPI TDA FSP+
Sbjct: 1472 KNAIELQLPSYMEGLEFGMTPARSPVSGTPYHEGMMSPSYLLSPNLRLSPI-TDAQFSPY 1530

Query: 3417 VGGM 3428
            VGGM
Sbjct: 1531 VGGM 1534


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 2051 bits (5315), Expect = 0.0
 Identities = 1007/1143 (88%), Positives = 1077/1143 (94%), Gaps = 1/1143 (0%)
 Frame = +3

Query: 3    PYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 182
            PYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND
Sbjct: 392  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 451

Query: 183  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 362
            GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR
Sbjct: 452  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 511

Query: 363  AEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 542
            AEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG
Sbjct: 512  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 571

Query: 543  KVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELL 722
            KVPQP ILKPRP+WTGKQVFNLIIPKQINL R +AWH + + G LT GDT V +E+GELL
Sbjct: 572  KVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELL 631

Query: 723  SGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA 902
            SGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA
Sbjct: 632  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 691

Query: 903  ATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSA 1082
             TME IN+TISKAKN VKNLI+ AQ+K LEPEPGRTMMESFEN+VNQVLN ARD+AGSSA
Sbjct: 692  KTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSA 751

Query: 1083 QRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYG 1262
            Q+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYG
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 811

Query: 1263 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 1442
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 1443 GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLK 1622
            GTVRNSLGDVIQFLYGEDGMDSVWIESQ LDSLKMKKSEFD  +R+E D +NW P+YML+
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQ 931

Query: 1623 EHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFK 1802
            E++DDLKTI+E R+VFDAEVQKLE DR QLAT+IAT+GD+SWPLPVNLKRL+WNAQKTFK
Sbjct: 932  EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFK 991

Query: 1803 VDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVL 1982
            VD R  SDMHPME+VEAVDKLQERLKVVPGED LS EAQKNATLFFNILLRST ASKRVL
Sbjct: 992  VDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1983 KEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 2162
            KE +L REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 2163 NVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEV 2342
            NVTLGVPRLREIINVAKKIKTPSLSVFL P ++ TKERAKNVQC LEYT LRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEV 1171

Query: 2343 WYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAE 2522
            WYDPDPM TIIEEDV+FV+SYYEMPDE+++P+KISPWLLRIELNREMMVDKKLSMA +AE
Sbjct: 1172 WYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAE 1231

Query: 2523 KINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEM 2702
            KIN EF DD+TCIF DDNA+KLILRIRI+NDEAPKGEL  +SAEDDVFLKK+  +MLTEM
Sbjct: 1232 KINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEM 1291

Query: 2703 ALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNH 2882
            AL+GIPDINKVFIK+ K  K+D+ +GFK+E EWMLDTEGVNLLAVMCHE+VD+ RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNH 1351

Query: 2883 LIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 3062
            LIE++EVLGIEAVR+ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 3063 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNETMLQ 3242
            NDTGP+MRCSFEETVDILLDAAV+AESDYLRGVTENIMLGQLAPIGTG C+LYLN+ ML+
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLK 1471

Query: 3243 HAIELQLPSYVEGFEYGMTPVRSP-TGTPYHEGMMSPSILFSPNLRHSPISTDATFSPFV 3419
            +AIELQLPSY+EG E+GMTP RSP +GTPYH+GMMSP  LFSPNLR SP+ TDA FSP+V
Sbjct: 1472 NAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV-TDAQFSPYV 1530

Query: 3420 GGM 3428
            GGM
Sbjct: 1531 GGM 1533