BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00005900
         (1281 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun...   654   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...   651   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...   651   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...   651   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...   651   0.0  
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr...   651   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   650   0.0  
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...   649   0.0  
gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isofo...   640   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...   637   e-180
gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus...   636   e-180
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su...   634   e-179
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...   632   e-178
ref|XP_006412058.1| hypothetical protein EUTSA_v10024193mg [Eutr...   631   e-178
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su...   630   e-178
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...   630   e-178
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...   629   e-178
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...   629   e-178
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su...   629   e-178
ref|XP_006282990.1| hypothetical protein CARUB_v10003976mg [Caps...   627   e-177

>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
            [Populus trichocarpa] gi|550338614|gb|ERP60834.1|
            DNA-directed RNA polymerase II largest subunit family
            protein [Populus trichocarpa]
          Length = 1837

 Score =  654 bits (1687), Expect = 0.0
 Identities = 320/366 (87%), Positives = 343/366 (93%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MDTRFPYSPAEVAKV ++QFGILS DEIRQMSV+Q+E SETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVC+NCSKILADEEDHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKI+NPK+RLK+IL+ACKNK KCEGGD IDVQ Q D  EPVKKSRGGCGAQQP  T
Sbjct: 121  FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQ-DNEEPVKKSRGGCGAQQPKLT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK+ +KK+D+QEQLPEP ERKQ L+AE+VLSVLKRISDEDCQLLG +PKYA
Sbjct: 180  IEGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQER+GAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score =  651 bits (1680), Expect = 0.0
 Identities = 320/366 (87%), Positives = 339/366 (92%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MDTRFPYSPAEVAKV ++QFGILS DEIRQMSVVQ+E  ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMR VC+NCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKIRNPKNRLK+IL+ACKNK KCEGGD IDV  Q DG EP+KK++GGCGAQQP  T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQ-DGEEPLKKNKGGCGAQQPKLT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK  +KKND+QEQLPEP ERKQ L+AE+VL VLKRISDEDCQLLG NPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score =  651 bits (1680), Expect = 0.0
 Identities = 320/366 (87%), Positives = 339/366 (92%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MDTRFPYSPAEVAKV ++QFGILS DEIRQMSVVQ+E  ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMR VC+NCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKIRNPKNRLK+IL+ACKNK KCEGGD IDV  Q DG EP+KK++GGCGAQQP  T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQ-DGEEPLKKNKGGCGAQQPKLT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK  +KKND+QEQLPEP ERKQ L+AE+VL VLKRISDEDCQLLG NPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score =  651 bits (1680), Expect = 0.0
 Identities = 320/366 (87%), Positives = 339/366 (92%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MDTRFPYSPAEVAKV ++QFGILS DEIRQMSVVQ+E  ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMR VC+NCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKIRNPKNRLK+IL+ACKNK KCEGGD IDV  Q DG EP+KK++GGCGAQQP  T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQ-DGEEPLKKNKGGCGAQQPKLT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK  +KKND+QEQLPEP ERKQ L+AE+VL VLKRISDEDCQLLG NPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score =  651 bits (1680), Expect = 0.0
 Identities = 320/366 (87%), Positives = 339/366 (92%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MDTRFPYSPAEVAKV ++QFGILS DEIRQMSVVQ+E  ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMR VC+NCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKIRNPKNRLK+IL+ACKNK KCEGGD IDV  Q DG EP+KK++GGCGAQQP  T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQ-DGEEPLKKNKGGCGAQQPKLT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK  +KKND+QEQLPEP ERKQ L+AE+VL VLKRISDEDCQLLG NPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
            gi|557527347|gb|ESR38597.1| hypothetical protein
            CICLE_v10024686mg [Citrus clementina]
          Length = 1860

 Score =  651 bits (1679), Expect = 0.0
 Identities = 320/366 (87%), Positives = 338/366 (92%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MDTRFPYSPAEVAKV ++QFGILS DEIRQMSVVQ+E  ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMR VC+NCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKIRNPKNRLK+IL+ACKNK KCEGGD IDV  Q DG EP+KK +GGCGAQQP  T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQ-DGEEPLKKKKGGCGAQQPKLT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK  +KKND+QEQLPEP ERKQ L+AE+VL VLKRISDEDCQLLG NPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score =  650 bits (1677), Expect = 0.0
 Identities = 320/366 (87%), Positives = 338/366 (92%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFPYSPAEVAKV ++QFGILS DEIRQMSVVQ+E SETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVC+NCSKILADEEDHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQA KIRNPKNRLK+IL+ACKNK KCEGGD I+ Q   D  EPVKKSRGGCGAQQP  T
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQAL-DSDEPVKKSRGGCGAQQPKLT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK+ +KKND+ EQLPEP ERKQQLSAE+VL+VLKRISDEDC LLG NPKYA
Sbjct: 180  IEGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score =  649 bits (1674), Expect = 0.0
 Identities = 318/366 (86%), Positives = 339/366 (92%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFPYSPAEVAKV ++QFGILS DEIRQMSVVQ+EFSETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVC+NCSKILADEEDHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKI+NPKNRLK+IL+ACKNK KCEGGD IDV  Q D  EPVKKSRGGCGAQQP  T
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQ-DTDEPVKKSRGGCGAQQPRMT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK  +KKND+QEQLPEP ERKQ L+AE+VL VLKRISD+DC+LLGFNPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NL++QE+ GAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
            cacao] gi|508698846|gb|EOX90742.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
          Length = 1861

 Score =  640 bits (1651), Expect = 0.0
 Identities = 314/366 (85%), Positives = 337/366 (92%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFPYSPAEVAKV ++QFGILS DEIRQMSVVQ+E  ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVC+NCSKILADEE+HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKI+NPKNRLK+IL+ACKNK KCEGGD IDVQ Q D  EPVKKSRGGCGAQQP  +
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQ-DTEEPVKKSRGGCGAQQPKLS 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            I+GMK+IAEYK  +K+ND+QEQLPEP ERKQ L+AE+VLSVLKRISDEDCQLLG NPK+A
Sbjct: 180  IDGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTH LAMIIRHN+NLRRQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score =  637 bits (1644), Expect = e-180
 Identities = 313/366 (85%), Positives = 335/366 (91%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFP+SPAEVAKV ++QFGILS DEIRQMSVVQ+E  ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRK+KC+TCTA+MAECPGHFGHLELAKPMFHIGFLKTVL+IMRCVC+NCSKILADE DHK
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQAL+IRNPKNRLK+IL+ACKNK KCEGGD ID+  Q D  EPVKKSRGGCGAQQP  T
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQ-DTDEPVKKSRGGCGAQQPKIT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK  +KK+D+QEQLPEP ERKQ LSAE+VL VLKRISDEDCQLLG NPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NL+RQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFHIATYFDNELPG PRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
          Length = 1834

 Score =  636 bits (1641), Expect = e-180
 Identities = 313/366 (85%), Positives = 334/366 (91%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFP+SPAEVAKV ++QFGILS DEIRQMSVVQ+E  ETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRK+KC+TCTA+MAECPGHFGHLELAKPMFHIGFLKTVL+IMRCVC+NCSKILADE DHK
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQAL+IRNPKNRLK+IL+ACKNK KCEGGD ID+  Q D  EPVKKSRGGCGAQQP  T
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQ-DTDEPVKKSRGGCGAQQPKIT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMKIIAEYK  +KK+D+QEQLPEP ERKQ LSAE+VL VLKRISDEDCQLLG NPKYA
Sbjct: 180  IEGMKIIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NL+RQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFHIATYFDNELPG PRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
            DNA-directed RNA polymerase II subunit 1-like isoform X2
            [Glycine max]
          Length = 1827

 Score =  634 bits (1635), Expect = e-179
 Identities = 312/366 (85%), Positives = 334/366 (91%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFP+SPAEVAKV ++QFGILS DEIRQMSVVQ+E  ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRK+KC+TCTA+MAECPGHFGHLELAKPMFHIGFLKTVL+IMRCVC+NCSKILADE DHK
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQAL+IRNPKNRLK+IL+ACKNK KCEGGD ID+  Q D  E VKKSRGGCGAQQP  T
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQ-DTEESVKKSRGGCGAQQPKIT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK  +KK+D+QEQLPEP ERKQ LSAE+VL VLKRISDEDCQLLG NPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NL+RQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFHIATYFDNELPG PRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score =  632 bits (1629), Expect = e-178
 Identities = 309/366 (84%), Positives = 335/366 (91%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFPYSPAEVAKV L+QFGILS DEIRQMSVVQ+E +ET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRK+KC+TC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVC+NCSKILADE+D K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKIRNPKNRLKRI +ACK+KK C GGD +DVQ+Q+D  EPVK+ RGGCGAQQP  T
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNIT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            ++GMK++AE+K  KKKND+QEQLPEP ERKQ LSAE+VL+VLKRISDEDC LLG NPK+A
Sbjct: 180  VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            +EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_006412058.1| hypothetical protein EUTSA_v10024193mg [Eutrema salsugineum]
            gi|557113228|gb|ESQ53511.1| hypothetical protein
            EUTSA_v10024193mg [Eutrema salsugineum]
          Length = 1837

 Score =  631 bits (1627), Expect = e-178
 Identities = 305/366 (83%), Positives = 334/366 (91%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MDTRFP+SPAEV+KV ++QFGILS DEIRQMSV+ VE SETTE+GKPK GGLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRK+KC+TC ANMAECPGHFGHLELAKPMFH+GF+KTVLSIMRCVC+NCSKILADEEDHK
Sbjct: 61   DRKVKCETCMANMAECPGHFGHLELAKPMFHVGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQA+KI+NPKNRLK+IL+ACKNK KCEGGD ID    +D  EPVKKSRGGCGAQQP  T
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCEGGDEIDDVQNQDTDEPVKKSRGGCGAQQPKLT 180

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+ AEYK+T+KK DE +QLPEPAERKQ L A++VLSVLKRISDEDCQLLGFNPKYA
Sbjct: 181  IEGMKMTAEYKITRKKTDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKYA 240

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMIL+VL        PSVMMD +SRSEDDLTHQLAMIIRHN+NL+RQE+NGAPAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEF QLLQFHIATYFDNELPGQPRATQ+SGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 19   RTVITP 2
            RTVITP
Sbjct: 361  RTVITP 366


>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Brachypodium distachyon]
          Length = 1862

 Score =  630 bits (1625), Expect = e-178
 Identities = 304/366 (83%), Positives = 335/366 (91%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFPYSPAEVAKV L+QFGILS DEIRQMSVV +E++ET E+GK KPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEYAETMEKGKAKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRK+KCDTC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVC+NCSKILADE+D K
Sbjct: 61   DRKVKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDAK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKIRNPKN+L+RI +ACK+KK C GGD ++V+DQ+D  EPVKK RGGCGAQQP  T
Sbjct: 121  FKQALKIRNPKNKLRRIYDACKSKKICAGGDDLEVEDQQDTDEPVKKKRGGCGAQQPNIT 180

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            ++GMK++AE+K TKKKND+Q+QLPEP ERKQ LSAE+VL+VLKRISDEDC LLG NPK+A
Sbjct: 181  VDGMKMVAEFKQTKKKNDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 240

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 300

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            +EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 19   RTVITP 2
            RTVITP
Sbjct: 361  RTVITP 366


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score =  630 bits (1624), Expect = e-178
 Identities = 307/368 (83%), Positives = 334/368 (90%), Gaps = 2/368 (0%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFPYSPAEVAKV ++QFGILS +EIR MSVV+++ SET ERGKPKP GLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVC+NCS+ILADEEDH+
Sbjct: 61   DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSR-GGCGAQQPTF 563
            FKQALKIRNPK RLK++L+ CKNK KCEGGD ID    +D  E VKK R GGCGAQQP  
Sbjct: 121  FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180

Query: 562  TIEGMKIIAEYKMTKKKNDEQEQ-LPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPK 386
            TIEGMK++AEYK+ +KKNDEQEQ LPEP ERKQQL+AEKVL+VLKRI+DEDCQLLG NPK
Sbjct: 181  TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240

Query: 385  YARPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAH 206
            YARPDWMILQV+        PSVMMDTSSRSEDDLTHQLAM+IRHN+NL+RQE+NGAPAH
Sbjct: 241  YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300

Query: 205  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDF 26
            IISEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDF
Sbjct: 301  IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360

Query: 25   SARTVITP 2
            SARTVITP
Sbjct: 361  SARTVITP 368


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score =  629 bits (1622), Expect = e-178
 Identities = 307/366 (83%), Positives = 334/366 (91%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFPYSPAEVAKV L+QFGILS DEIRQMSV+Q+E +ET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRK+KC+TC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVC+NCSKILADE+D K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKIRNPKNRLKRI +ACK+KK C GGD +DVQ+Q+D  EPVKK RGGCGAQQP  T
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNIT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            ++GMK++AE+K  KKK D+Q+QLPEP ERKQ LSAE+VL+VLKRISDEDC LLG NPK+A
Sbjct: 180  VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            +EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score =  629 bits (1622), Expect = e-178
 Identities = 307/366 (83%), Positives = 334/366 (91%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFPYSPAEVAKV L+QFGILS DEIRQMSV+Q+E +ET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRK+KC+TC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVC+NCSKILADE+D K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQALKIRNPKNRLKRI +ACK+KK C GGD +DVQ+Q+D  EPVKK RGGCGAQQP  T
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNIT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            ++GMK++AE+K  KKK D+Q+QLPEP ERKQ LSAE+VL+VLKRISDEDC LLG NPK+A
Sbjct: 180  VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            +EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
            arietinum]
          Length = 1834

 Score =  629 bits (1622), Expect = e-178
 Identities = 309/366 (84%), Positives = 335/366 (91%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MD RFP+SPAEVAKV ++QFGILS DEIRQMSVVQ+E  ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRKMKC+TCTA+MAECPGHFG+LELAKPMFHIGFLKTVLSIMRCVC+NCSKILADE+DHK
Sbjct: 61   DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQAL+I++PKNRL++IL+ACKNK KCEGGD ID+    D  EPVKKSRGGCGAQQP  T
Sbjct: 121  FKQALRIKSPKNRLRKILDACKNKTKCEGGDDIDMPGH-DTEEPVKKSRGGCGAQQPKIT 179

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK  +KK+D+QEQLPEP ERKQ LSAE+VL VLKRISDEDCQLLG NPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDW+ILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHN+NL+RQERNG+PAHII
Sbjct: 240  RPDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHII 299

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEFAQLLQFHIATYFDNELPG PRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 19   RTVITP 2
            RTVITP
Sbjct: 360  RTVITP 365


>ref|XP_006282990.1| hypothetical protein CARUB_v10003976mg [Capsella rubella]
            gi|482551695|gb|EOA15888.1| hypothetical protein
            CARUB_v10003976mg [Capsella rubella]
          Length = 1838

 Score =  627 bits (1616), Expect = e-177
 Identities = 302/366 (82%), Positives = 335/366 (91%)
 Frame = -3

Query: 1099 MDTRFPYSPAEVAKVHLIQFGILSSDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI 920
            MDTRFP+SPAEV+KV ++QFGILS DEIRQMSV+ VE SETTE+GKPK GGLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI 60

Query: 919  DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK 740
            DRK+KC+TC ANMAECPGHFGHLELAKPM+H+GF+KTVLSIMRCVC+NCSKILADEE+HK
Sbjct: 61   DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 739  FKQALKIRNPKNRLKRILEACKNKKKCEGGDSIDVQDQEDGGEPVKKSRGGCGAQQPTFT 560
            FKQA+KI+NPKNRLK+IL+ACKNK KC+GGD ID    +D  EPVKKSRGGCGAQQP  T
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDEIDDVHSQDTEEPVKKSRGGCGAQQPKLT 180

Query: 559  IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRISDEDCQLLGFNPKYA 380
            IEGMK+IAEYK+T+KK DE +QLPEPAERKQ L A++VLSVLKRISDEDCQLLGFNPK+A
Sbjct: 181  IEGMKMIAEYKITRKKTDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKFA 240

Query: 379  RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 200
            RPDWMIL+VL        PSVMMD +SRSEDDLTHQLAMIIRHN+NL+RQE+NGAPAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 199  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 20
            SEF QLLQFHIATYFDNELPGQPRATQ+SGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 19   RTVITP 2
            RTVITP
Sbjct: 361  RTVITP 366