BLASTX nr result
ID: Achyranthes22_contig00005842
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes22_contig00005842
(1101 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY09046.1| Eukaryotic rpb5 RNA polymerase subunit family pro... 293 6e-77
ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ri... 293 6e-77
emb|CBI30093.3| unnamed protein product [Vitis vinifera] 290 7e-76
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I... 290 7e-76
gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subun... 287 6e-75
ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, I... 285 2e-74
ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V sub... 285 2e-74
gb|ESW34110.1| hypothetical protein PHAVU_001G125200g [Phaseolus... 285 3e-74
gb|EMJ03728.1| hypothetical protein PRUPE_ppa010980mg [Prunus pe... 283 9e-74
ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citr... 281 3e-73
ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, I... 280 7e-73
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin... 278 2e-72
ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, I... 277 5e-72
ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Popu... 275 2e-71
ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V sub... 271 3e-70
ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, I... 270 6e-70
ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, I... 268 4e-69
ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III ... 260 8e-67
ref|XP_002876396.1| eukaryotic rpb5 RNA polymerase subunit famil... 259 1e-66
gb|AFK43162.1| unknown [Medicago truncatula] 258 4e-66
>gb|EOY09046.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
[Theobroma cacao]
Length = 228
Score = 293 bits (751), Expect = 6e-77
Identities = 150/224 (66%), Positives = 174/224 (77%)
Frame = +1
Query: 88 MEVDGEVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEF 267
+E DG NGEA+GKCLS VDDG+TESHRYYL+R+T LEML+DRG+AVP SEI+L L EF
Sbjct: 6 LEGDGS-NGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQEF 64
Query: 268 RNIYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLIL 447
R IYG PD DRLR+S + D SK+ILV+F GP +VKV+ IR I I NKESLTGLIL
Sbjct: 65 RAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLIL 124
Query: 448 ILQSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXX 627
+LQ+ ITNQA K +DLF+FKVEIFQITDLLVNITKHVLKPKHQVLT +
Sbjct: 125 VLQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSIE 184
Query: 628 XXXXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PR+ K DAIA+YYG E+GQV+KVMY GEITQSHVTYRC+W
Sbjct: 185 EKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCVW 228
>ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 238
Score = 293 bits (751), Expect = 6e-77
Identities = 144/237 (60%), Positives = 178/237 (75%)
Frame = +1
Query: 49 KENPAKPSESES*MEVDGEVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFA 228
+EN + + + + N E +GKC SS+ DDGT E+HRYYL+R+T LEML+DRG++
Sbjct: 2 EENGVTAAVNGNGTDASERFNMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYS 61
Query: 229 VPNSEIDLPLHEFRNIYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGA 408
VP+SEIDL L EFR I+GP PD DRL+ S D SK++LV+F GP ++KV+TIR I
Sbjct: 62 VPSSEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAG 121
Query: 409 QIVNKESLTGLILILQSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTP 588
QIVNK+SLTGLIL+LQ++ITNQA K VDLF FKVE+FQITDLLVNITKHVLKPKHQVLT
Sbjct: 122 QIVNKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTD 181
Query: 589 RXXXXXXXXXXXXXXXXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
R PR+ + DAIA+YYGLEKGQV+KV Y+GEIT+SHVTYRC+W
Sbjct: 182 REKQKLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238
>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 290 bits (742), Expect = 7e-76
Identities = 145/222 (65%), Positives = 174/222 (78%), Gaps = 1/222 (0%)
Frame = +1
Query: 97 DGEVNGE-AVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFRN 273
DG++NG+ V +CLSSFVD+G ESHRYYLAR+T LEML+DRG+++P +ID+ L +FR+
Sbjct: 109 DGDLNGDFEVKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRS 168
Query: 274 IYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILIL 453
Y KPDPDRLRIS A R D SKKILVIFCGP +VKVN IR I QIVNK+SL+ LIL+L
Sbjct: 169 FYSQKPDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVL 228
Query: 454 QSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXXX 633
Q+ IT+QA K VDLF+F+VE FQITDLLVNITKHVLKPKH+VLT +
Sbjct: 229 QNHITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEK 288
Query: 634 XXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PRM + DAIA+YYGLEKGQV+KV+Y GEIT SHVTYRC+W
Sbjct: 289 QLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 330
>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 290 bits (742), Expect = 7e-76
Identities = 145/222 (65%), Positives = 174/222 (78%), Gaps = 1/222 (0%)
Frame = +1
Query: 97 DGEVNGE-AVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFRN 273
DG++NG+ V +CLSSFVD+G ESHRYYLAR+T LEML+DRG+++P +ID+ L +FR+
Sbjct: 8 DGDLNGDFEVKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRS 67
Query: 274 IYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILIL 453
Y KPDPDRLRIS A R D SKKILVIFCGP +VKVN IR I QIVNK+SL+ LIL+L
Sbjct: 68 FYSQKPDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVL 127
Query: 454 QSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXXX 633
Q+ IT+QA K VDLF+F+VE FQITDLLVNITKHVLKPKH+VLT +
Sbjct: 128 QNHITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEK 187
Query: 634 XXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PRM + DAIA+YYGLEKGQV+KV+Y GEIT SHVTYRC+W
Sbjct: 188 QLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 229
>gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
notabilis]
Length = 231
Score = 287 bits (734), Expect = 6e-75
Identities = 138/220 (62%), Positives = 172/220 (78%)
Frame = +1
Query: 100 GEVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFRNIY 279
GE NGE +G CLSS +D G+ ESHRY+L+R T LEMLKDRG++VP+S+I+L LH+FR IY
Sbjct: 12 GEPNGETLGTCLSSLIDKGSVESHRYFLSRITLLEMLKDRGYSVPSSDINLSLHDFRQIY 71
Query: 280 GPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILILQS 459
G PD DRLR S D SK+ILVIFC P +VKV ++RGI QIVN+ +LTGLIL+LQS
Sbjct: 72 GQIPDVDRLRFSVTHLSDPSKRILVIFCEPGVVKVTSVRGIAGQIVNRNTLTGLILVLQS 131
Query: 460 KITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXXXXX 639
++TNQAQK V+L FKVEIFQITDLL+NITKH+L+PKH+VLT +
Sbjct: 132 QMTNQAQKAVELLPFKVEIFQITDLLINITKHLLRPKHRVLTDQEKQKLLKKYSIEVKQL 191
Query: 640 PRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PRMSKNDAIA+YYGLEKGQV+K++Y+G IT S++TYRC+W
Sbjct: 192 PRMSKNDAIARYYGLEKGQVVKIIYSGGITDSYITYRCVW 231
>ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Solanum lycopersicum]
Length = 227
Score = 285 bits (730), Expect = 2e-74
Identities = 141/227 (62%), Positives = 175/227 (77%), Gaps = 3/227 (1%)
Frame = +1
Query: 88 MEVDG---EVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPL 258
M+++G +V+GE +G CL+SFVDDGT ESHRY+LAR+T LEMLKDRGFA+PNSEID L
Sbjct: 1 MDLNGLAMDVDGENLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTL 60
Query: 259 HEFRNIYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTG 438
EFR YG PD +RLR+S R+D + K+LVIFCGP VKVN IR I QI+NKESL+
Sbjct: 61 QEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSR 120
Query: 439 LILILQSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXX 618
LIL++Q+++TN A K V+LF+FKVEIFQITDLLVNITKHVLKP+H++LT
Sbjct: 121 LILVIQNQMTNPALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKY 180
Query: 619 XXXXXXXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PRMS+ DAIA+YYGLEKGQV+KV Y+ EI ++HVTYRC+W
Sbjct: 181 NLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
>ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
tuberosum]
Length = 227
Score = 285 bits (729), Expect = 2e-74
Identities = 140/227 (61%), Positives = 175/227 (77%), Gaps = 3/227 (1%)
Frame = +1
Query: 88 MEVDG---EVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPL 258
M+++G +V+G+ +G CL+SFVDDGT ESHRY+LAR+T LEMLKDRGFA+PNSEID L
Sbjct: 1 MDLNGLAMDVDGDNLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTL 60
Query: 259 HEFRNIYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTG 438
EFR YG PD +RLR+S R+D + K+LVIFCGP VKVN IR I QI+NKESL+
Sbjct: 61 QEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSR 120
Query: 439 LILILQSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXX 618
LIL++Q+++TN A K V+LF+FKVEIFQITDLLVNITKHVLKP+H++LT
Sbjct: 121 LILVIQNQMTNPAMKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKY 180
Query: 619 XXXXXXXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PRMS+ DAIA+YYGLEKGQV+KV Y+ EI ++HVTYRC+W
Sbjct: 181 NLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
>gb|ESW34110.1| hypothetical protein PHAVU_001G125200g [Phaseolus vulgaris]
Length = 242
Score = 285 bits (728), Expect = 3e-74
Identities = 138/215 (64%), Positives = 170/215 (79%)
Frame = +1
Query: 115 EAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFRNIYGPKPD 294
E V CLS F+DDGT ESHRYYL+R+TTLEMLKDRG+++P++EIDL L +FR+++G PD
Sbjct: 28 EQVKGCLSKFIDDGTVESHRYYLSRRTTLEMLKDRGYSIPSNEIDLSLSQFRHMHGHSPD 87
Query: 295 PDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILILQSKITNQ 474
PDRLR+S A + SK+ILVIFCGP +VKV IR I QIVN+++L+GLILI+++ +T+Q
Sbjct: 88 PDRLRLSLAHATNPSKRILVIFCGPGVVKVTAIRNIAGQIVNRDTLSGLILIVENHVTSQ 147
Query: 475 AQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXXXXXPRMSK 654
A K V LF+FKVEIFQITDLLVNITKHVLKPKHQVLT R PRM +
Sbjct: 148 ALKAVGLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQ 207
Query: 655 NDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
DAIA+YYGLE+GQV+KV Y+GEITQ HVTYRC+W
Sbjct: 208 TDAIARYYGLERGQVVKVTYSGEITQMHVTYRCVW 242
>gb|EMJ03728.1| hypothetical protein PRUPE_ppa010980mg [Prunus persica]
Length = 228
Score = 283 bits (724), Expect = 9e-74
Identities = 134/223 (60%), Positives = 172/223 (77%)
Frame = +1
Query: 91 EVDGEVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFR 270
E +G+ NGE +G CL+ +VDDG+ ESHRYYL+R+T LEM++DRG++VP+SEIDL L +FR
Sbjct: 6 EANGDANGEILGPCLTGYVDDGSPESHRYYLSRRTVLEMIRDRGYSVPSSEIDLSLQDFR 65
Query: 271 NIYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILI 450
++G PD +RLR S R D S +I+VI+CGP +VKVN IRG+ +QI NK++L GLILI
Sbjct: 66 ALHGQNPDVERLRFSATHRTDPSDRIMVIYCGPGIVKVNVIRGLHSQIANKDTLNGLILI 125
Query: 451 LQSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXX 630
Q++IT+QA K ++L+ FK EIFQITDLLVNITKHVLKPKH VLT +
Sbjct: 126 TQNQITSQALKTMELYPFKTEIFQITDLLVNITKHVLKPKHHVLTEQEKQKLLKKYNIEE 185
Query: 631 XXXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PR+S+ DAIA+YYGLEKGQV+KV Y G+IT+SHVTYRCIW
Sbjct: 186 NQLPRLSRKDAIAQYYGLEKGQVVKVTYTGDITESHVTYRCIW 228
>ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citrus clementina]
gi|568879109|ref|XP_006492520.1| PREDICTED: DNA-directed
RNA polymerase V subunit 5A-like isoform X1 [Citrus
sinensis] gi|557544341|gb|ESR55319.1| hypothetical
protein CICLE_v10021999mg [Citrus clementina]
Length = 236
Score = 281 bits (720), Expect = 3e-73
Identities = 144/229 (62%), Positives = 176/229 (76%), Gaps = 2/229 (0%)
Frame = +1
Query: 79 ES*MEVDGE--VNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDL 252
+S ME++G NGE CLS FVD+G+ +S RYYL+R+T LEMLKDRG+AV SEI+L
Sbjct: 8 DSSMEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINL 67
Query: 253 PLHEFRNIYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESL 432
+ +FR IYG PD DRLRIS + + D SK+ILV+FCGP +VKVN IR I +QIVN+++L
Sbjct: 68 SVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTL 127
Query: 433 TGLILILQSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXX 612
TGLILILQ++IT+QA K V LF FKVE+FQITDLLVNITKHVLKPKHQVLT +
Sbjct: 128 TGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
Query: 613 XXXXXXXXXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PRM K DAIA+YYGLE+GQV+KV Y+GEIT+SHVTYRC+W
Sbjct: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
>ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Fragaria vesca subsp. vesca]
Length = 225
Score = 280 bits (716), Expect = 7e-73
Identities = 136/219 (62%), Positives = 173/219 (78%), Gaps = 2/219 (0%)
Frame = +1
Query: 109 NGEAV--GKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFRNIYG 282
NG+ V G CLS FVDDG+TESHRY+L+R+T LEML+DRG++VP+SEIDL L +FR+++G
Sbjct: 7 NGDEVVAGPCLSGFVDDGSTESHRYFLSRRTVLEMLRDRGYSVPSSEIDLSLQDFRSLHG 66
Query: 283 PKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILILQSK 462
PD DRL ST D S+++LVI+CGP +VKVN IRG+ +QI NK++L+GLILILQ +
Sbjct: 67 QNPDADRLCFSTVHSSDPSERMLVIYCGPGIVKVNVIRGLHSQIANKDTLSGLILILQGQ 126
Query: 463 ITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXXXXXP 642
IT+QA K +DL+ FKVEIFQITDLLVNITKHVLKP+HQVLT + P
Sbjct: 127 ITSQALKTLDLYPFKVEIFQITDLLVNITKHVLKPQHQVLTEQAKQALLKKFNIEEKQLP 186
Query: 643 RMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
R+S+ DAIAKYYGLE+GQV+KV Y+G+IT+ HVTYRC+W
Sbjct: 187 RISQKDAIAKYYGLERGQVVKVTYSGDITKGHVTYRCVW 225
>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 278 bits (712), Expect = 2e-72
Identities = 135/219 (61%), Positives = 168/219 (76%)
Frame = +1
Query: 103 EVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFRNIYG 282
E E CLS FVD+G+ ESHRYYL+R+TTLEMLKDRG+++P+ EIDL L +FR+I+G
Sbjct: 19 EEEAEQAKGCLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHG 78
Query: 283 PKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILILQSK 462
PDPDRLR+S + SK+ILVIFCGP +VKV IR QI+N+++LTGLILI+++
Sbjct: 79 QFPDPDRLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENH 138
Query: 463 ITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXXXXXP 642
IT+QA K V+LF+FKVEIFQITDLLVNITKHVLKPKHQVLT + P
Sbjct: 139 ITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLP 198
Query: 643 RMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
RM + DAIA+YYGLE+GQV+KV Y+GE+TQ HVTYRC+W
Sbjct: 199 RMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 237
>ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cicer arietinum]
Length = 244
Score = 277 bits (709), Expect = 5e-72
Identities = 136/219 (62%), Positives = 166/219 (75%)
Frame = +1
Query: 103 EVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFRNIYG 282
+V + GKCL + +DDG+ ESHRYYL+R+TTLEMLKDRG+++P SEI L LHEFR +G
Sbjct: 26 QVQSQEQGKCLITKIDDGSVESHRYYLSRRTTLEMLKDRGYSIPPSEIQLSLHEFRQTHG 85
Query: 283 PKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILILQSK 462
PD DRLR + + SK+ILVIF GP +VKVN +R I QIVN+++LTGLILI+QS+
Sbjct: 86 HSPDVDRLRFTATHTTNPSKRILVIFSGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQSQ 145
Query: 463 ITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXXXXXP 642
IT+QA K V+L +FKVEIFQITDLLVNITKHVLKPKHQVLT + P
Sbjct: 146 ITSQALKAVNLLSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKKNLLKKYNIQEKQLP 205
Query: 643 RMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
RM + DAIA+YYGLE+GQV+KV Y GEITQ HVTYRC+W
Sbjct: 206 RMLQTDAIARYYGLERGQVVKVTYTGEITQMHVTYRCVW 244
>ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Populus trichocarpa]
gi|550320761|gb|EEF05018.2| hypothetical protein
POPTR_0016s03800g [Populus trichocarpa]
Length = 243
Score = 275 bits (704), Expect = 2e-71
Identities = 132/221 (59%), Positives = 169/221 (76%)
Frame = +1
Query: 97 DGEVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFRNI 276
+G E++G+CLSSFVD+G+TESHRYYL+R+T LEMLKDRG++VP+SEID+ L +FR +
Sbjct: 23 NGSFGMESLGRCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGV 82
Query: 277 YGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILILQ 456
YG PD + L+ S + D SK++LVIFCG +VKV IR I QI +++SLTGLIL+LQ
Sbjct: 83 YGQNPDIELLKFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQ 142
Query: 457 SKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXXXX 636
+ ITNQA K +DLF FK+EIFQITDLLVNITKH+LKPKHQVL+ +
Sbjct: 143 NNITNQAMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQ 202
Query: 637 XPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PR+ K DAI++YYGLE+GQV+KV Y G+IT SHVTYRC+W
Sbjct: 203 LPRLLKKDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 243
>ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
tuberosum]
Length = 227
Score = 271 bits (693), Expect = 3e-70
Identities = 140/227 (61%), Positives = 167/227 (73%), Gaps = 3/227 (1%)
Frame = +1
Query: 88 MEVDG---EVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPL 258
M+V+G EV+ V CL+SFVDDGT ESHRY+LARKT LEMLKDRGFA+PNSEID L
Sbjct: 1 MDVNGSAMEVDVVNVSPCLASFVDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIDTTL 60
Query: 259 HEFRNIYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTG 438
EFR YG +PD +RLRIS R D + K+LVIFCGP VK+N IR I +QI+NKESL+
Sbjct: 61 QEFREKYGQRPDAERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRSILSQIMNKESLSR 120
Query: 439 LILILQSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXX 618
LILI+++ +TN A K V+ FK EIFQITDLLVNITKHVLKPKH++LT
Sbjct: 121 LILIIENPMTNPAMKVVEDSPFKTEIFQITDLLVNITKHVLKPKHELLTNTEKEQLLKKY 180
Query: 619 XXXXXXXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PRMS+ DAIA+YYGLEKGQV+KV Y EI ++HVTYRC+W
Sbjct: 181 NLEDKQLPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHVTYRCVW 227
>ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1-like
[Cucumis sativus]
Length = 227
Score = 270 bits (691), Expect = 6e-70
Identities = 133/227 (58%), Positives = 164/227 (72%), Gaps = 3/227 (1%)
Frame = +1
Query: 88 MEVDG---EVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPL 258
ME DG E N G CLSS++DDGTTESHRY+L+R+T +EMLKDRG+ + + ID L
Sbjct: 1 MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60
Query: 259 HEFRNIYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTG 438
+FR +G PD DRL++S A D SK++LV+FCG VKVN IR I QI NK+SL G
Sbjct: 61 QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
Query: 439 LILILQSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXX 618
LILI+Q++ITNQA K V+LF+FKVEIFQITDLLVNITKH LKP HQVLT
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
Query: 619 XXXXXXXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PRM + DAIA+YYGLEKGQV+KV Y G++T++H+TYRC+W
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227
>ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Solanum lycopersicum]
Length = 227
Score = 268 bits (684), Expect = 4e-69
Identities = 138/227 (60%), Positives = 166/227 (73%), Gaps = 3/227 (1%)
Frame = +1
Query: 88 MEVDG---EVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPL 258
M+V+G EV+ V CL+SFVDDGT ESHRY+LARKT LEMLKDRGFA+PNSEI+ L
Sbjct: 1 MDVNGSAMEVDVVNVSPCLTSFVDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIETTL 60
Query: 259 HEFRNIYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTG 438
EFR YG +PD +RLRIS R D + K+LVIFCGP VK+N IR I +QI+NKESL+
Sbjct: 61 QEFREKYGQRPDVERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRNILSQIMNKESLSR 120
Query: 439 LILILQSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXX 618
LILI+++ +TN A K V+ FK EIFQITDLLVNITKHVLKPKH++LT
Sbjct: 121 LILIIENPMTNPAMKVVEDSPFKTEIFQITDLLVNITKHVLKPKHELLTNAEKEQLLKKY 180
Query: 619 XXXXXXXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PRMS+ DAIA+YYGLEKGQV+KV Y EI ++H TYRC+W
Sbjct: 181 NLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHATYRCVW 227
>ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula] gi|124359979|gb|ABN07995.1| RNA
polymerase subunit, RPB5; RNA polymerase Rpb5,
N-terminal [Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases
I, II, and III subunit RPABC1 [Medicago truncatula]
Length = 248
Score = 260 bits (664), Expect = 8e-67
Identities = 127/211 (60%), Positives = 160/211 (75%)
Frame = +1
Query: 127 KCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFRNIYGPKPDPDRL 306
+CL + D+G+ ESHRYYL+R+T LEMLKDRG+++P+ EI L L +FR I+G PD DRL
Sbjct: 38 QCLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRL 97
Query: 307 RISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILILQSKITNQAQKQ 486
R++ + SK+ILV+F GP +VKVN +R I QIVN+ESLTGLILI+Q++IT+QA K
Sbjct: 98 RLTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKA 157
Query: 487 VDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXXXXXPRMSKNDAI 666
V+L +FKVEIFQITDLLVN TKHVLKPKHQVLT + PRM + DAI
Sbjct: 158 VNLLSFKVEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAI 217
Query: 667 AKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
A+YYGL++GQV+KV Y GEITQ HVTYRC+W
Sbjct: 218 ARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248
>ref|XP_002876396.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata] gi|297322234|gb|EFH52655.1|
eukaryotic rpb5 RNA polymerase subunit family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 222
Score = 259 bits (662), Expect = 1e-66
Identities = 125/224 (55%), Positives = 164/224 (73%)
Frame = +1
Query: 88 MEVDGEVNGEAVGKCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEF 267
MEV G+ ++ CLS +VD + ESHRYYLAR+ L+ML+DRG+ V + +I+L LH+F
Sbjct: 1 MEVKGKETAPSL--CLSKYVDPSSEESHRYYLARQNALQMLRDRGYQVSDEDINLSLHDF 58
Query: 268 RNIYGPKPDPDRLRISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLIL 447
R +YG +PD DRLRIS R D SKK+ V+F G +VKVN IR I A ++++E++TGLIL
Sbjct: 59 RAVYGERPDVDRLRISAQHRSDSSKKVKVVFFGTGMVKVNAIRSIAADVLSQETVTGLIL 118
Query: 448 ILQSKITNQAQKQVDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXX 627
+LQS++T QA K ++LF+FKVEIFQITDLLVNITKH LKP+H+VL +
Sbjct: 119 VLQSQVTKQAMKAIELFSFKVEIFQITDLLVNITKHALKPQHRVLNDKEKTTLLKKFSIE 178
Query: 628 XXXXPRMSKNDAIAKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
PR+SK DAI +YYGLEKGQV+KV Y GE+T+SHV YRC+W
Sbjct: 179 EKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAYRCVW 222
>gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 258 bits (658), Expect = 4e-66
Identities = 126/211 (59%), Positives = 159/211 (75%)
Frame = +1
Query: 127 KCLSSFVDDGTTESHRYYLARKTTLEMLKDRGFAVPNSEIDLPLHEFRNIYGPKPDPDRL 306
+CL + D+G+ ESHRYYL+R+T LEMLKDRG+++P+ EI L L +FR I+G PD DRL
Sbjct: 38 QCLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRL 97
Query: 307 RISTARRDDESKKILVIFCGPQLVKVNTIRGIGAQIVNKESLTGLILILQSKITNQAQKQ 486
R++ + SK+ILV+F GP +VKVN +R I QIVN+ESLTGLILI+Q++IT+QA K
Sbjct: 98 RLTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKA 157
Query: 487 VDLFNFKVEIFQITDLLVNITKHVLKPKHQVLTPRXXXXXXXXXXXXXXXXPRMSKNDAI 666
V+L +FKVEI QITDLLVN TKHVLKPKHQVLT + PRM + DAI
Sbjct: 158 VNLLSFKVEILQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAI 217
Query: 667 AKYYGLEKGQVLKVMYAGEITQSHVTYRCIW 759
A+YYGL++GQV+KV Y GEITQ HVTYRC+W
Sbjct: 218 ARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248