BLASTX nr result
ID: Achyranthes22_contig00005706
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes22_contig00005706
(1356 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 182 3e-53
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 209 3e-51
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 209 3e-51
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 208 4e-51
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 206 2e-50
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 205 4e-50
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 187 6e-50
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 204 9e-50
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 202 3e-49
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 200 1e-48
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 197 6e-48
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 197 8e-48
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 197 8e-48
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 197 8e-48
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 196 2e-47
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 196 2e-47
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 196 2e-47
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 195 3e-47
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 194 7e-47
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 194 9e-47
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 182 bits (462), Expect(2) = 3e-53
Identities = 83/151 (54%), Positives = 111/151 (73%)
Frame = +2
Query: 455 ISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL 634
I K++F +HC+ GK K++ + H T+G+LDY+HSDLWGP+R S GG Y++TI+DD
Sbjct: 428 IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDY 487
Query: 635 *RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIA 814
RK+ YFLK+K + F FKEWK +++ QT +KVK LRTD G+EFCS F +CK++GI
Sbjct: 488 SRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIV 547
Query: 815 RHHTIPGTPQQNGVAERMNITI*ERERVVCS 907
RH+TIP TPQQNGVAERMN TI + R + S
Sbjct: 548 RHYTIPHTPQQNGVAERMNRTIISKARCMLS 578
Score = 55.1 bits (131), Expect(2) = 3e-53
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 924 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRI 1055
K FW EA +TA YLINRS + +++ P EVW G+PV+YS++R+
Sbjct: 584 KQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPVNYSDLRV 627
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 209 bits (531), Expect = 3e-51
Identities = 113/236 (47%), Positives = 147/236 (62%), Gaps = 12/236 (5%)
Frame = +2
Query: 458 SKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL* 637
SK++F +HC+ GK K++ + +H TKG LDY+H+DLWGPS+ PS GG YMLTIIDD
Sbjct: 455 SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYS 514
Query: 638 RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIAR 817
RK+ YFLK+K F+ FK WKV+I+ QT +KVK LRTD G EFCS+ FN +C+ +GI R
Sbjct: 515 RKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVR 574
Query: 818 HHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*SGYN-CIILNQPFCK*ITR 994
HHTIP TPQQNGVAERMN TI R R + S + ++F + C ++N+ + +
Sbjct: 575 HHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNK 634
Query: 995 K-----------QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
K YS+ K C AYAHV+ GKLEPRA V FL +
Sbjct: 635 KTPIEVWSGTPADYSQ----------LKVFGCTAYAHVDNGKLEPRA-VKCLFLGY 679
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 209 bits (531), Expect = 3e-51
Identities = 113/236 (47%), Positives = 147/236 (62%), Gaps = 12/236 (5%)
Frame = +2
Query: 458 SKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL* 637
SK++F +HC+ GK K++ + +H TKG LDY+H+DLWGPS+ PS GG YMLTIIDD
Sbjct: 455 SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYS 514
Query: 638 RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIAR 817
RK+ YFLK+K F+ FK WKV+I+ QT +KVK LRTD G EFCS+ FN +C+ +GI R
Sbjct: 515 RKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVR 574
Query: 818 HHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*SGYN-CIILNQPFCK*ITR 994
HHTIP TPQQNGVAERMN TI R R + S + ++F + C ++N+ + +
Sbjct: 575 HHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNK 634
Query: 995 K-----------QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
K YS+ K C AYAHV+ GKLEPRA V FL +
Sbjct: 635 KTPIEVWSGTPADYSQ----------LKVFGCTAYAHVDNGKLEPRA-VKCLFLGY 679
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 208 bits (530), Expect = 4e-51
Identities = 112/236 (47%), Positives = 147/236 (62%), Gaps = 12/236 (5%)
Frame = +2
Query: 458 SKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL* 637
SK++F +HC+ GK K++ + +H TKG LDY+H+DLWGPS+ PS GG YMLT+IDD
Sbjct: 455 SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYS 514
Query: 638 RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIAR 817
RK+ YFLK+K F+ FK WKV+I+ QT +KVK LRTD G EFCS+ FN +C+ +GI R
Sbjct: 515 RKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVR 574
Query: 818 HHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*SGYN-CIILNQPFCK*ITR 994
HHTIP TPQQNGVAERMN TI R R + S + ++F + C ++N+ + +
Sbjct: 575 HHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNK 634
Query: 995 K-----------QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
K YS+ K C AYAHV+ GKLEPRA V FL +
Sbjct: 635 KTPIEVWSGMPADYSQ----------LKVFGCTAYAHVDNGKLEPRA-VKCLFLGY 679
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 206 bits (523), Expect = 2e-50
Identities = 112/236 (47%), Positives = 146/236 (61%), Gaps = 12/236 (5%)
Frame = +2
Query: 458 SKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL* 637
SK++F +HC+ GK K++ + +H TKG LDY+H+DLWGPS+ PS GG YMLTIIDD
Sbjct: 457 SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYS 516
Query: 638 RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIAR 817
RK+ YFLK+K F+ FK WKV+I+ QT +KVK L TD G EFCS+ FN +C+ +GI R
Sbjct: 517 RKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVR 576
Query: 818 HHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*SGYN-CIILNQPFCK*ITR 994
HHTIP TPQQNGVAERMN TI R R + S + ++F + C ++N+ + +
Sbjct: 577 HHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNK 636
Query: 995 K-----------QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
K YS+ K C AYAHV+ GKLEPRA V FL +
Sbjct: 637 KTPIEVWSGTPADYSQ----------LKVFGCTAYAHVDNGKLEPRA-VKCLFLGY 681
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 205 bits (521), Expect = 4e-50
Identities = 114/232 (49%), Positives = 145/232 (62%), Gaps = 6/232 (2%)
Frame = +2
Query: 440 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 619
L+ + + +EF +HCV GK + K IHRTKG LDYIHSD WGP RV S GG + ++
Sbjct: 435 LAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVS 494
Query: 620 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCK 799
IIDD R VY +K+KS+ F FKEWK+L++NQTGKK+KRLRTD GLEFC +EF+ FCK
Sbjct: 495 IIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCK 554
Query: 800 NKGIARHHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*S-GYNCIILNQP- 973
++GIARH T+ TPQQNGVAERMN T+ ER R + S + +F + C ++N+
Sbjct: 555 DEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGP 614
Query: 974 ----FCK*ITRKQYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPF 1117
CK T + G K C AY HV+EGKLEPRA F
Sbjct: 615 HTGIQCK--TPMEMWSGKAADYSN--LKAFGCTAYYHVSEGKLEPRAKKGVF 662
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 187 bits (476), Expect(2) = 6e-50
Identities = 88/148 (59%), Positives = 111/148 (75%)
Frame = +2
Query: 464 VEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*RK 643
++F +HCV GK K++ + +HRTKG+LDY+H+DLWGPSR PS GG YMLTIIDD RK
Sbjct: 455 MKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRK 514
Query: 644 L*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHH 823
+ YFLK+K F+ FKEWKV+I+ Q K+VK LRTD G EFCS+ F+ +C+ +GI RHH
Sbjct: 515 VWPYFLKHKDDTFAAFKEWKVMIERQAEKEVKVLRTDNGGEFCSDAFDDYCRKEGIGRHH 574
Query: 824 TIPGTPQQNGVAERMNITI*ERERVVCS 907
TIP TPQQN VAERMN TI + R + S
Sbjct: 575 TIPYTPQQNSVAERMNRTIISKARCMLS 602
Score = 38.5 bits (88), Expect(2) = 6e-50
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +3
Query: 924 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLG 1025
K +W EAA T YLINRS + L P EVW G
Sbjct: 608 KHYWAEAANTTCYLINRSPSILLNKETPIEVWSG 641
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 204 bits (518), Expect = 9e-50
Identities = 111/234 (47%), Positives = 146/234 (62%), Gaps = 12/234 (5%)
Frame = +2
Query: 464 VEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*RK 643
++F +HCV GK K++ + +HRTKG+LDY+H+DLWGPSR PS GG YMLTIIDD RK
Sbjct: 353 MKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRK 412
Query: 644 L*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHH 823
+ YFLK+K F+ FKEWKV+IK QT K+VK LRTD G FCS+ F+ +C+ +GI HH
Sbjct: 413 VWPYFLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMHH 472
Query: 824 TIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*SGYN-CIILNQPFCK*ITRK- 997
TIP TPQQNGVAERMN TI + R + S + ++F + C ++N+ + +K
Sbjct: 473 TIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAAKTACYLINRSPSISLNKKT 532
Query: 998 ----------QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
YS+ + C AYAHVN GKLEPRA + FL +
Sbjct: 533 PIEVWSGMPANYSQ----------LRVFGCTAYAHVNNGKLEPRA-IKCLFLGY 575
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 202 bits (514), Expect = 3e-49
Identities = 110/234 (47%), Positives = 147/234 (62%), Gaps = 12/234 (5%)
Frame = +2
Query: 464 VEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*RK 643
++F +HCV GK K++ + +HR+KG+LDY+H+DLWGPSR PS GG YMLTIIDD RK
Sbjct: 398 MKFCEHCVFGKHKRVKFNTSVHRSKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRK 457
Query: 644 L*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHH 823
+ YFLK+K F+ FKEWKV+I+ QT K+VK LRTD G EFCS+ F+ +C+ +GI RHH
Sbjct: 458 VWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDSGGEFCSDAFDDYCRKEGIVRHH 517
Query: 824 TIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG-*SGYNCIILNQPFCK*ITRK- 997
TIP TPQQNGVAERMN TI R + S + ++F + C ++N+ + +K
Sbjct: 518 TIPYTPQQNGVAERMNRTIISNTRCMLSNARMNKRFWAEVANTACYLINRSPSIPLNKKT 577
Query: 998 ----------QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
YS+ + C AYAHV+ GKLEPRA + FL +
Sbjct: 578 PIEVWSGMPADYSQ----------LRVFGCTAYAHVDNGKLEPRA-IKCLFLGY 620
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 200 bits (509), Expect = 1e-48
Identities = 110/235 (46%), Positives = 146/235 (62%), Gaps = 12/235 (5%)
Frame = +2
Query: 461 KVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*R 640
K++F +HCV GK K++ + +HRTKG+LDY+H+DLWGPSR GG YMLTIIDD R
Sbjct: 457 KMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSR 516
Query: 641 KL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARH 820
K+ YFLK+K F+ FKEWKV I+ QT K+VK LRTD G EFCS+ F+ +C+ +GI RH
Sbjct: 517 KVWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRH 576
Query: 821 HTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*SGYN-CIILNQPFCK*ITRK 997
HTIP TPQQNGVAERMN TI + R + S + ++F + C ++N+ + +K
Sbjct: 577 HTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKK 636
Query: 998 -----------QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
YS+ + C AYAHV+ GKLEPRA + FL +
Sbjct: 637 TPIEVWSGMPADYSQ----------LRVFGCTAYAHVDNGKLEPRA-IKCLFLGY 680
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 197 bits (502), Expect = 6e-48
Identities = 109/236 (46%), Positives = 146/236 (61%), Gaps = 12/236 (5%)
Frame = +2
Query: 464 VEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*RK 643
++F + CV GK K++ + +HRTKG+LDY+H+DLWGPSR PS GG YMLTIIDD RK
Sbjct: 458 MKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRK 517
Query: 644 L*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHH 823
+ YFLK+K F+ FKEWKV+I+ QT K+VK LRTD EFCS+ F+ +C+ +GI RHH
Sbjct: 518 VWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHH 577
Query: 824 TIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*SGYN-CIILNQPFCK*ITRK- 997
TIP TPQQNGVAERMN TI + R + S + ++F + C ++N+ + +K
Sbjct: 578 TIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKT 637
Query: 998 ----------QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSFKL 1135
YS+ + C AYAHV+ KLEPRA + FL + L
Sbjct: 638 PIEIWSGMPADYSQ----------LRVFGCTAYAHVDNEKLEPRA-IKCLFLGYGL 682
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 197 bits (501), Expect = 8e-48
Identities = 106/234 (45%), Positives = 147/234 (62%), Gaps = 4/234 (1%)
Frame = +2
Query: 440 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 619
L I K++F +HC+ GK K++ + H T+G+LDY+HSDLWGP+R S GG YM+T
Sbjct: 664 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMT 723
Query: 620 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCK 799
I+DD RK+ YFLK+K + F FKEWK +++ QT +KVK LRTD G+EFCS F +CK
Sbjct: 724 IVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCK 783
Query: 800 NKGIARHHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*S-GYNCIILNQPF 976
++GI RH+T+P TPQQNGVAERMN TI + R + S + ++F + C ++N+
Sbjct: 784 SEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSP 843
Query: 977 CK*ITRK---QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
I +K + GS + C AYAHV+ GKLEPRA + FL +
Sbjct: 844 SYAIDKKTPIEVWSGSPANYSD--LRVFGCTAYAHVDNGKLEPRA-IKCIFLGY 894
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 197 bits (501), Expect = 8e-48
Identities = 106/233 (45%), Positives = 147/233 (63%), Gaps = 3/233 (1%)
Frame = +2
Query: 440 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 619
L ISK++F +HC+ GK K++ + H T+G+LDY+HSDLWGP+R S GG YM+T
Sbjct: 457 LDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 516
Query: 620 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCK 799
I+DD RK+ YFLK+K + F+ FKEWK +++ QT +KVK LRTD G+EFCS F +CK
Sbjct: 517 IVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCK 576
Query: 800 NKGIARHHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*S-GYNCIILNQ-- 970
++GI RH+T+P TPQQNGVAERMN I + R + S + ++F + C ++N+
Sbjct: 577 SEGIVRHYTVPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSP 636
Query: 971 PFCK*ITRKQYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
+ T + GS K C AYAHV+ GKLEPRA + FL +
Sbjct: 637 SYANKKTPIEVWSGSPANYSD--LKVFGCTAYAHVDNGKLEPRA-IKCIFLGY 686
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 197 bits (501), Expect = 8e-48
Identities = 106/234 (45%), Positives = 147/234 (62%), Gaps = 4/234 (1%)
Frame = +2
Query: 440 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 619
L I K++F +HC+ GK K++ + H T+G+LDY+HSDLWGP+R S GG YM+T
Sbjct: 457 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMT 516
Query: 620 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCK 799
I+DD RK+ YFLK+K + F FKEWK +++ QT +KVK LRTD G+EFCS F +CK
Sbjct: 517 IVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCK 576
Query: 800 NKGIARHHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*S-GYNCIILNQPF 976
++GI RH+T+P TPQQNGVAERMN TI + R + S + ++F + C ++N+
Sbjct: 577 SEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSP 636
Query: 977 CK*ITRK---QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
I +K + GS + C AYAHV+ GKLEPRA + FL +
Sbjct: 637 SYAIDKKTPIEVWSGSPANYSD--LRVFGCTAYAHVDNGKLEPRA-IKCIFLGY 687
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 196 bits (498), Expect = 2e-47
Identities = 110/232 (47%), Positives = 140/232 (60%), Gaps = 2/232 (0%)
Frame = +2
Query: 440 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 619
L N ++ + F +HCV GK ++ +K IH T+ LDYIHSDLWGPSRVPS GG Y LT
Sbjct: 415 LGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLT 474
Query: 620 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCK 799
+IDD RK+ +YFLK KS+ F FKEWK+L++ QT +KVK+LRTD GLEF SN+FN C+
Sbjct: 475 LIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQ 534
Query: 800 NKGIARHHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*SGYNCI--ILNQP 973
+GIARH T+ TPQQNG+AERMN TI ER R + S + + F + + I P
Sbjct: 535 KEGIARHRTVRYTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSP 594
Query: 974 FCK*ITRKQYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
+ K + K C AY H KLEPRA V FL +
Sbjct: 595 SSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRA-VKCIFLGY 645
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 196 bits (498), Expect = 2e-47
Identities = 115/295 (38%), Positives = 168/295 (56%), Gaps = 21/295 (7%)
Frame = +2
Query: 440 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 619
L I K++F +HC+ GK K++ + H T+G+LDY+HSDLWGP+R S GG YM+T
Sbjct: 274 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 333
Query: 620 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCK 799
I++D RK+ YFLK+K + F+ FKEWK +++ QT +KVK LRTD G+EFCS F +CK
Sbjct: 334 IVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCK 393
Query: 800 NKGIARHHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*S-GYNCIILNQPF 976
++GI RH+T+P TPQQNGVAERMN TI + R + S + ++F + C ++N+
Sbjct: 394 SEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSP 453
Query: 977 CK*ITRKQYSK---GSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSFK----- 1132
I +K K GS K C AYAHV+ GKLEPR + FL +
Sbjct: 454 GYAIDKKTPIKVWSGSPANYSD--LKVFGCTAYAHVDNGKLEPRT-IKCIFLGYPSGVKG 510
Query: 1133 ------------LMDYMFCHKQIMALQEFRNTIR*KQQIHFAIQFLIIFINSSVR 1261
+ Y+ H+ +M + I + Q ++Q I+ + SS++
Sbjct: 511 YKLWCPETKKVVISRYVVFHESVMLHDKPSTNIPVESQEKASVQIQILLLFSSLQ 565
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 196 bits (498), Expect = 2e-47
Identities = 115/295 (38%), Positives = 168/295 (56%), Gaps = 21/295 (7%)
Frame = +2
Query: 440 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 619
L I K++F +HC+ GK K++ + H T+G+LDY+HSDLWGP+R S GG YM+T
Sbjct: 442 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 501
Query: 620 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCK 799
I++D RK+ YFLK+K + F+ FKEWK +++ QT +KVK LRTD G+EFCS F +CK
Sbjct: 502 IVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCK 561
Query: 800 NKGIARHHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*S-GYNCIILNQPF 976
++GI RH+T+P TPQQNGVAERMN TI + R + S + ++F + C ++N+
Sbjct: 562 SEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSP 621
Query: 977 CK*ITRKQYSK---GSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSFK----- 1132
I +K K GS K C AYAHV+ GKLEPR + FL +
Sbjct: 622 GYAIDKKTPIKVWSGSPANYSD--LKVFGCTAYAHVDNGKLEPRT-IKCIFLGYPSGVKG 678
Query: 1133 ------------LMDYMFCHKQIMALQEFRNTIR*KQQIHFAIQFLIIFINSSVR 1261
+ Y+ H+ +M + I + Q ++Q I+ + SS++
Sbjct: 679 YKLWCPETKKVVISRYVVFHESVMLHDKPSTNIPVESQEKASVQIQILLLFSSLQ 733
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 195 bits (496), Expect = 3e-47
Identities = 109/234 (46%), Positives = 145/234 (61%), Gaps = 12/234 (5%)
Frame = +2
Query: 464 VEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*RK 643
++F +HCV GK K++ + +HRTKG+LDY+H+DLWGPSR PS GG YMLTIIDD RK
Sbjct: 458 MKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRK 517
Query: 644 L*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHH 823
YFLK+K F+ FKE KV+I+ QT K+VK L TD G EFCS+ F+ +C+ +GI RHH
Sbjct: 518 EWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHH 577
Query: 824 TIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*SGYN-CIILNQPFCK*ITRK- 997
TIP TPQQNGVAERMN TI + R + S + ++F + C ++N+ + +K
Sbjct: 578 TIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKT 637
Query: 998 ----------QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
YS+ + C AYAHV+ GKLEPRA + FL +
Sbjct: 638 PIEIWSGMPADYSQ----------LRVFGCTAYAHVDNGKLEPRA-IKCLFLGY 680
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 194 bits (493), Expect = 7e-47
Identities = 104/234 (44%), Positives = 145/234 (61%), Gaps = 4/234 (1%)
Frame = +2
Query: 440 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 619
L I K++F +HC+ GK K++ + H T+G+LDY+HSDLWGP+R S GG YM+T
Sbjct: 366 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 425
Query: 620 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCK 799
I+DD RK+ YFLK+K + F FKEWK +++ QT +KVK LRTD G+E CS F +CK
Sbjct: 426 IVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCK 485
Query: 800 NKGIARHHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*S-GYNCIILNQPF 976
++GI RH+T+P TPQQNGVAERMN TI + R + S + ++F + C ++N+
Sbjct: 486 SEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSP 545
Query: 977 CK*ITRK---QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
I +K + GS + C AYAHV+ GKLEPR + FL +
Sbjct: 546 SYAIDKKTPIEVWSGSPANYSD--LRVFGCTAYAHVDNGKLEPRV-IKCIFLGY 596
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 194 bits (492), Expect = 9e-47
Identities = 104/234 (44%), Positives = 145/234 (61%), Gaps = 4/234 (1%)
Frame = +2
Query: 440 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 619
L I K++F +HC+ GK K++ + H T+G+LDY+HSDLWGP+R S GG YM+T
Sbjct: 396 LDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMT 455
Query: 620 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKNQTGKKVKRLRTDKGLEFCSNEFNVFCK 799
I+DD RK+ YFLK+K + F FKEWK +++ QT +KVK LRTD G+EFCS +F +C+
Sbjct: 456 IVDDYSRKVWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYCR 515
Query: 800 NKGIARHHTIPGTPQQNGVAERMNITI*ERERVVCSLILV*EKFLG*SGYN-CIILNQPF 976
++GI RH+T+ TPQQNGV ERMN TI + R + S + +F + C ++N+
Sbjct: 516 SEGIVRHYTVSHTPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRSP 575
Query: 977 CK*ITRK---QYSKGSLVR*PR*LFKCKNCHAYAHVNEGKLEPRAHVSPFFLSF 1129
I +K + GS K C AYAHV+ GKLEPRA + FL +
Sbjct: 576 SYAIDKKTPIEMWSGSPANYSD--LKVFGCTAYAHVDNGKLEPRA-IKCIFLGY 626