BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00005591
         (4394 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29879.3| unnamed protein product [Vitis vinifera]              729   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   729   0.0  
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca...   699   0.0  
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...   699   0.0  
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca...   697   0.0  
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...   697   0.0  
gb|ADV58926.1| bolting time control 1 [Beta vulgaris subsp. vulg...   694   0.0  
gb|ADV58931.1| bolting time control 1 [Beta vulgaris subsp. vulg...   692   0.0  
gb|ADV58925.1| bolting time control 1 [Beta vulgaris subsp. vulg...   684   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   682   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...   677   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   674   0.0  
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...   672   0.0  
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...   672   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...   672   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...   671   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...   667   0.0  
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...   665   0.0  
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus...   664   0.0  
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...   664   0.0  

>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  729 bits (1881), Expect = 0.0
 Identities = 389/671 (57%), Positives = 482/671 (71%), Gaps = 10/671 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI +P+ LW+GKQVI+A+L+ ITRG  PFT +K  KI REYFG +  +K  G  K  + 
Sbjct: 701  PAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGK--DP 758

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             S ++K  R  KK                                  E  + ++KNELV+
Sbjct: 759  GSDRRKEKRIEKKHG--------------------------------EYKLLIHKNELVR 786

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QF KYGLVH VQELYGS+ AG LLSVLSR+ T FLQMHGFTCGV DLL+   YD
Sbjct: 787  GVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYD 846

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHENEHLDFSETQVEIEKAIRRNGESAVALLDGMMRSK 722
              RK  L  S N GE VH +FIG  +  +D  + QVE+EK I  NGE+A+  LD MM+++
Sbjct: 847  IARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNE 906

Query: 723  LNTLNSAVTK-LFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRVPR 899
            LN L S V K L  +GL+KPF KN LSLMT +GAKG T NF QIS  LGQQ+LEGKRVPR
Sbjct: 907  LNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPR 966

Query: 900  MVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSGYL 1079
            MVSGKTLPCF PWD +ARAGGFISDR+LTGL PQE+YFHCMAGREGLVDTAVKTSRSGYL
Sbjct: 967  MVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYL 1026

Query: 1080 QRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLIVSK 1259
            QRCLIKNLECL V YDYTVRD+DGSI+QF YG+DGVD+H+ +++ E+EALA+N++++  K
Sbjct: 1027 QRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEK 1086

Query: 1260 NPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRR--TRSKDLSNFLKLVK 1433
                   D   + Y++   ++P +L K+ K+F+E     M  R+     K   +F+ LVK
Sbjct: 1087 FG----QDGKFNGYIQ---KLPKELRKKTKKFIEG---FMEERQDFDNMKKQKDFVNLVK 1136

Query: 1434 NKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASV 1613
             KY  SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGE+NVTLGIPRLQEILMTA+ 
Sbjct: 1137 QKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAAN 1196

Query: 1614 SIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYKLK 1793
             IKTP MTCPL   ++KDDAE+LA+KLK++TVAD+ E+MEVSIVPF ++ ++ CSIYKLK
Sbjct: 1197 DIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLK 1256

Query: 1794 VKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKSEIQPKGS-- 1967
            +KLYEP LYPPHT I+LEDC+ TL+  ++ ELE AI+ HLLLLS+I+GIK+ +    S  
Sbjct: 1257 MKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMA 1316

Query: 1968 -----DDMNGD 1985
                 +D +GD
Sbjct: 1317 SKETDEDASGD 1327


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  729 bits (1881), Expect = 0.0
 Identities = 389/671 (57%), Positives = 482/671 (71%), Gaps = 10/671 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI +P+ LW+GKQVI+A+L+ ITRG  PFT +K  KI REYFG +  +K  G  K  + 
Sbjct: 772  PAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGK--DP 829

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             S ++K  R  KK                                  E  + ++KNELV+
Sbjct: 830  GSDRRKEKRIEKKHG--------------------------------EYKLLIHKNELVR 857

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QF KYGLVH VQELYGS+ AG LLSVLSR+ T FLQMHGFTCGV DLL+   YD
Sbjct: 858  GVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYD 917

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHENEHLDFSETQVEIEKAIRRNGESAVALLDGMMRSK 722
              RK  L  S N GE VH +FIG  +  +D  + QVE+EK I  NGE+A+  LD MM+++
Sbjct: 918  IARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNE 977

Query: 723  LNTLNSAVTK-LFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRVPR 899
            LN L S V K L  +GL+KPF KN LSLMT +GAKG T NF QIS  LGQQ+LEGKRVPR
Sbjct: 978  LNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPR 1037

Query: 900  MVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSGYL 1079
            MVSGKTLPCF PWD +ARAGGFISDR+LTGL PQE+YFHCMAGREGLVDTAVKTSRSGYL
Sbjct: 1038 MVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYL 1097

Query: 1080 QRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLIVSK 1259
            QRCLIKNLECL V YDYTVRD+DGSI+QF YG+DGVD+H+ +++ E+EALA+N++++  K
Sbjct: 1098 QRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEK 1157

Query: 1260 NPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRR--TRSKDLSNFLKLVK 1433
                   D   + Y++   ++P +L K+ K+F+E     M  R+     K   +F+ LVK
Sbjct: 1158 FG----QDGKFNGYIQ---KLPKELRKKTKKFIEG---FMEERQDFDNMKKQKDFVNLVK 1207

Query: 1434 NKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASV 1613
             KY  SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGE+NVTLGIPRLQEILMTA+ 
Sbjct: 1208 QKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAAN 1267

Query: 1614 SIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYKLK 1793
             IKTP MTCPL   ++KDDAE+LA+KLK++TVAD+ E+MEVSIVPF ++ ++ CSIYKLK
Sbjct: 1268 DIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLK 1327

Query: 1794 VKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKSEIQPKGS-- 1967
            +KLYEP LYPPHT I+LEDC+ TL+  ++ ELE AI+ HLLLLS+I+GIK+ +    S  
Sbjct: 1328 MKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMA 1387

Query: 1968 -----DDMNGD 1985
                 +D +GD
Sbjct: 1388 SKETDEDASGD 1398


>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  699 bits (1805), Expect = 0.0
 Identities = 375/676 (55%), Positives = 486/676 (71%), Gaps = 8/676 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI++P+ LWTGKQVIS++L  ITRG  PFTV K AKI R++F R+   KN  S++   E
Sbjct: 417  PAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFF-RNRRNKNKQSSR---E 472

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             +Q K + ++ K                          E+N     DE+ + +Y+N+LV+
Sbjct: 473  ENQPKNDGQKAKVA------------------------EKNSKKEPDEEKILIYRNDLVR 508

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QF  YGLVHTVQELYGS+ AG LLSV SR+ T FLQMHGFTCGV DLL+ +  D
Sbjct: 509  GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKD 568

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHE-NEHLDFSETQVEIEKAIRRNGESAVALLDGMMRS 719
             +RKK L+       + H +  G + N     +E Q+EIE+ IRR+GE+A+  LD  M S
Sbjct: 569  IERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMIS 628

Query: 720  KLNTLNS--AVTKLFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRV 893
             LN  +S   +T+L  EGL+K   +N +SLMT SGAKG   NFQQIS  LGQQELEGKRV
Sbjct: 629  VLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRV 688

Query: 894  PRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSG 1073
            PRMVSGKTLPCF PWD +ARAGGFISDR+L+GLRPQE+YFHCMAGREGLVDTAVKTSRSG
Sbjct: 689  PRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSG 748

Query: 1074 YLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLIV 1253
            YLQRCLIKNLECL + YD+TVRDADGSI+QF YGEDG+D+H+ +++ ++EALALNQ ++ 
Sbjct: 749  YLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMS 808

Query: 1254 SK--NPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLSNFLKL 1427
             K  + L + DD+        D  +P+ L  +A++F+ +       ++ + KD   FL L
Sbjct: 809  EKLCSQLGEPDDS--------DKILPDGLRSKAEQFIREEIKKYQHQKIKPKD---FLNL 857

Query: 1428 VKNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTA 1607
            +K K+  SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTA
Sbjct: 858  LKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 917

Query: 1608 SVSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYK 1787
            S+ I+TP MTCPL K KTK+DA  LA+K+K+ITVAD++E+MEVS+ PFA++  +ICSIYK
Sbjct: 918  SIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYK 977

Query: 1788 LKVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKS---EIQP 1958
            LK+ L +P+ Y  ++ IT++DC+  L+  +L ELE AI+ HL+LLS+I+GIK    + Q 
Sbjct: 978  LKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQR 1037

Query: 1959 KGSDDMNGDVSESKSQ 2006
              S++M+ DVSE +S+
Sbjct: 1038 NASNEMDEDVSEGRSR 1053


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  699 bits (1805), Expect = 0.0
 Identities = 375/676 (55%), Positives = 486/676 (71%), Gaps = 8/676 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI++P+ LWTGKQVIS++L  ITRG  PFTV K AKI R++F R+   KN  S++   E
Sbjct: 709  PAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFF-RNRRNKNKQSSR---E 764

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             +Q K + ++ K                          E+N     DE+ + +Y+N+LV+
Sbjct: 765  ENQPKNDGQKAKVA------------------------EKNSKKEPDEEKILIYRNDLVR 800

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QF  YGLVHTVQELYGS+ AG LLSV SR+ T FLQMHGFTCGV DLL+ +  D
Sbjct: 801  GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKD 860

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHE-NEHLDFSETQVEIEKAIRRNGESAVALLDGMMRS 719
             +RKK L+       + H +  G + N     +E Q+EIE+ IRR+GE+A+  LD  M S
Sbjct: 861  IERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMIS 920

Query: 720  KLNTLNS--AVTKLFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRV 893
             LN  +S   +T+L  EGL+K   +N +SLMT SGAKG   NFQQIS  LGQQELEGKRV
Sbjct: 921  VLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRV 980

Query: 894  PRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSG 1073
            PRMVSGKTLPCF PWD +ARAGGFISDR+L+GLRPQE+YFHCMAGREGLVDTAVKTSRSG
Sbjct: 981  PRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1040

Query: 1074 YLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLIV 1253
            YLQRCLIKNLECL + YD+TVRDADGSI+QF YGEDG+D+H+ +++ ++EALALNQ ++ 
Sbjct: 1041 YLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMS 1100

Query: 1254 SK--NPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLSNFLKL 1427
             K  + L + DD+        D  +P+ L  +A++F+ +       ++ + KD   FL L
Sbjct: 1101 EKLCSQLGEPDDS--------DKILPDGLRSKAEQFIREEIKKYQHQKIKPKD---FLNL 1149

Query: 1428 VKNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTA 1607
            +K K+  SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTA
Sbjct: 1150 LKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1209

Query: 1608 SVSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYK 1787
            S+ I+TP MTCPL K KTK+DA  LA+K+K+ITVAD++E+MEVS+ PFA++  +ICSIYK
Sbjct: 1210 SIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYK 1269

Query: 1788 LKVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKS---EIQP 1958
            LK+ L +P+ Y  ++ IT++DC+  L+  +L ELE AI+ HL+LLS+I+GIK    + Q 
Sbjct: 1270 LKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQR 1329

Query: 1959 KGSDDMNGDVSESKSQ 2006
              S++M+ DVSE +S+
Sbjct: 1330 NASNEMDEDVSEGRSR 1345


>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  697 bits (1799), Expect = 0.0
 Identities = 374/675 (55%), Positives = 485/675 (71%), Gaps = 7/675 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI++P+ LWTGKQVIS++L  ITRG  PFTV K AKI R++F R+   KN  S++   E
Sbjct: 417  PAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFF-RNRRNKNKQSSR---E 472

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             +Q K + ++ K                          E+N     DE+ + +Y+N+LV+
Sbjct: 473  ENQPKNDGQKAKVA------------------------EKNSKKEPDEEKILIYRNDLVR 508

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QF  YGLVHTVQELYGS+ AG LLSV SR+ T FLQMHGFTCGV DLL+ +  D
Sbjct: 509  GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKD 568

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHENEHLDFSETQVEIEKAIRRNGESAVALLDGMMRSK 722
             +RKK L+       + H +  G +      +E Q+EIE+ IRR+GE+A+  LD  M S 
Sbjct: 569  IERKKQLEDCEKKVTEAHYELFGVKVN--SETELQLEIERTIRRDGETALTALDRKMISV 626

Query: 723  LNTLNS--AVTKLFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRVP 896
            LN  +S   +T+L  EGL+K   +N +SLMT SGAKG   NFQQIS  LGQQELEGKRVP
Sbjct: 627  LNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVP 686

Query: 897  RMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSGY 1076
            RMVSGKTLPCF PWD +ARAGGFISDR+L+GLRPQE+YFHCMAGREGLVDTAVKTSRSGY
Sbjct: 687  RMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 746

Query: 1077 LQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLIVS 1256
            LQRCLIKNLECL + YD+TVRDADGSI+QF YGEDG+D+H+ +++ ++EALALNQ ++  
Sbjct: 747  LQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSE 806

Query: 1257 K--NPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLSNFLKLV 1430
            K  + L + DD+        D  +P+ L  +A++F+ +       ++ + KD   FL L+
Sbjct: 807  KLCSQLGEPDDS--------DKILPDGLRSKAEQFIREEIKKYQHQKIKPKD---FLNLL 855

Query: 1431 KNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTAS 1610
            K K+  SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTAS
Sbjct: 856  KLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS 915

Query: 1611 VSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYKL 1790
            + I+TP MTCPL K KTK+DA  LA+K+K+ITVAD++E+MEVS+ PFA++  +ICSIYKL
Sbjct: 916  IDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKL 975

Query: 1791 KVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKS---EIQPK 1961
            K+ L +P+ Y  ++ IT++DC+  L+  +L ELE AI+ HL+LLS+I+GIK    + Q  
Sbjct: 976  KMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRN 1035

Query: 1962 GSDDMNGDVSESKSQ 2006
             S++M+ DVSE +S+
Sbjct: 1036 ASNEMDEDVSEGRSR 1050


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  697 bits (1799), Expect = 0.0
 Identities = 374/675 (55%), Positives = 485/675 (71%), Gaps = 7/675 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI++P+ LWTGKQVIS++L  ITRG  PFTV K AKI R++F R+   KN  S++   E
Sbjct: 709  PAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFF-RNRRNKNKQSSR---E 764

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             +Q K + ++ K                          E+N     DE+ + +Y+N+LV+
Sbjct: 765  ENQPKNDGQKAKVA------------------------EKNSKKEPDEEKILIYRNDLVR 800

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QF  YGLVHTVQELYGS+ AG LLSV SR+ T FLQMHGFTCGV DLL+ +  D
Sbjct: 801  GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKD 860

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHENEHLDFSETQVEIEKAIRRNGESAVALLDGMMRSK 722
             +RKK L+       + H +  G +      +E Q+EIE+ IRR+GE+A+  LD  M S 
Sbjct: 861  IERKKQLEDCEKKVTEAHYELFGVKVN--SETELQLEIERTIRRDGETALTALDRKMISV 918

Query: 723  LNTLNS--AVTKLFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRVP 896
            LN  +S   +T+L  EGL+K   +N +SLMT SGAKG   NFQQIS  LGQQELEGKRVP
Sbjct: 919  LNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVP 978

Query: 897  RMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSGY 1076
            RMVSGKTLPCF PWD +ARAGGFISDR+L+GLRPQE+YFHCMAGREGLVDTAVKTSRSGY
Sbjct: 979  RMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1038

Query: 1077 LQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLIVS 1256
            LQRCLIKNLECL + YD+TVRDADGSI+QF YGEDG+D+H+ +++ ++EALALNQ ++  
Sbjct: 1039 LQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSE 1098

Query: 1257 K--NPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLSNFLKLV 1430
            K  + L + DD+        D  +P+ L  +A++F+ +       ++ + KD   FL L+
Sbjct: 1099 KLCSQLGEPDDS--------DKILPDGLRSKAEQFIREEIKKYQHQKIKPKD---FLNLL 1147

Query: 1431 KNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTAS 1610
            K K+  SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTAS
Sbjct: 1148 KLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS 1207

Query: 1611 VSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYKL 1790
            + I+TP MTCPL K KTK+DA  LA+K+K+ITVAD++E+MEVS+ PFA++  +ICSIYKL
Sbjct: 1208 IDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKL 1267

Query: 1791 KVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKS---EIQPK 1961
            K+ L +P+ Y  ++ IT++DC+  L+  +L ELE AI+ HL+LLS+I+GIK    + Q  
Sbjct: 1268 KMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRN 1327

Query: 1962 GSDDMNGDVSESKSQ 2006
             S++M+ DVSE +S+
Sbjct: 1328 ASNEMDEDVSEGRSR 1342


>gb|ADV58926.1| bolting time control 1 [Beta vulgaris subsp. vulgaris]
            gi|319657099|gb|ADV58928.1| bolting time control 1 [Beta
            vulgaris subsp. vulgaris] gi|319657103|gb|ADV58930.1|
            bolting time control 1 [Beta vulgaris subsp. vulgaris]
          Length = 788

 Score =  694 bits (1790), Expect = 0.0
 Identities = 386/620 (62%), Positives = 437/620 (70%), Gaps = 43/620 (6%)
 Frame = -2

Query: 4072 MRLIKGNEIRCDGAKGEVELNKHIEAEKKGGRGGVACKGQRLLREDELRIVDDSEDANSR 3893
            MRLI  NE     AK   ELN+HI A KK GRG VA +GQ L  EDELRI++D EDANSR
Sbjct: 1    MRLIHKNEDGPGVAKSVAELNQHIVAVKKEGRGRVAGEGQGLSEEDELRIIEDGEDANSR 60

Query: 3892 RSLSSVQLP-QSHRPHSQIQTQGRVCWERFLPVGSPKVLLVECDDSTRHVVTALLRNCSY 3716
            RSLSSVQLP  +HRP  Q+Q QGRVCWERFLPVGSPKVLLVE DDSTRH+V+ALLRNCSY
Sbjct: 61   RSLSSVQLPVHTHRPQPQVQPQGRVCWERFLPVGSPKVLLVESDDSTRHIVSALLRNCSY 120

Query: 3715 EVIAVSNGIEAWKILEDLNNQIDLVLTEVVTSGLSGIGLLSKIMSHKSCQNIPVIMMSTH 3536
            EV+ V NGIEAWKILEDL+NQIDLVLTEVVTSGLSGIGLLSKIMSHKSCQN PVIMMS+H
Sbjct: 121  EVVGVPNGIEAWKILEDLSNQIDLVLTEVVTSGLSGIGLLSKIMSHKSCQNTPVIMMSSH 180

Query: 3535 DSMGIVLKCLSKGAADYLVKPIRKNELKNLWQHVWRRCHXXXXXXXXSCIRNENCTGTKC 3356
            DSMG+VLKCLSKGA D+LVKPIRKNELKNLWQHVWRRCH        SC+RN    G+K 
Sbjct: 181  DSMGLVLKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCVRNGKSIGSKR 240

Query: 3355 AXXXXXXXXXXXXXDNRSIGLQAQNGSDNGSGTQSSWTKRAAEVESPQPAFAWDQETEPP 3176
            A             DNRSIGLQA++GSDNGSGTQSSWTKRAAEVESPQP   W+Q T+PP
Sbjct: 241  AEESDNDTDSNEEDDNRSIGLQARDGSDNGSGTQSSWTKRAAEVESPQPQSTWEQATDPP 300

Query: 3175 DSTCAQVIYPMPEAFASSWVPGASQEHDERDNQPHNVLMGKDLEIGVPKSTDSRINAPNI 2996
            DSTCAQVIYPM EAFASSW+PG+ QE D +D+Q  NV MGKDLEIGVP+ +DSR+N PN 
Sbjct: 301  DSTCAQVIYPMSEAFASSWMPGSMQELDVQDHQYDNVPMGKDLEIGVPRISDSRLNGPNK 360

Query: 2995 K----TTVEKNKSSQLDLNLKSDGQSFDEEIMELSNDNPKGEWIIQAMNIVAEVDGNNEH 2828
            K    TT E+N+ SQLDLN ++DG+SFDEE +E++ND PK EWI QAMN   +V+   EH
Sbjct: 361  KVKLATTAEENQYSQLDLNQENDGRSFDEENLEMNNDKPKSEWIKQAMNSPGKVE---EH 417

Query: 2827 HRGCILSDEPPVLYEISKTKDKVEQHAEDLPCLDLSLKRLGD---------DQNILRHSQ 2675
            HRG  +SD PP   EISK KDK  QH ED+P L LSLKRLGD         DQNI+  S+
Sbjct: 418  HRGNKVSDAPP---EISKIKDKGMQHVEDMPSLVLSLKRLGDIADTSTNVSDQNIVGRSE 474

Query: 2674 VSAFTRYNTGSICNEGQTANVGSCS------EAAKQXXXXXXXXXXXXXXXXXXXXXXXX 2513
            +SAFTRYN+G+  N+GQT NVGSCS      EAAKQ                        
Sbjct: 475  LSAFTRYNSGTTGNQGQTGNVGSCSPPNNSSEAAKQSHFDAPHQISNSSSNNNNMGSTTN 534

Query: 2512 S---KPALATDKTPGKSTVNGSHHSSMFQPLQSGQ----------KASAGPLNAGTLHEN 2372
                KPA+  DKTP KSTVN SHHS +F+P+QS            K   G +N G L EN
Sbjct: 535  KFFKKPAMDIDKTPAKSTVNCSHHSHVFEPVQSSHMSNNNLTASGKPGVGSVN-GMLQEN 593

Query: 2371 ----------DKGNQQFKIQ 2342
                      +  +QQ KIQ
Sbjct: 594  VPVNAVLPQENNVDQQLKIQ 613


>gb|ADV58931.1| bolting time control 1 [Beta vulgaris subsp. vulgaris]
          Length = 788

 Score =  692 bits (1786), Expect = 0.0
 Identities = 395/655 (60%), Positives = 448/655 (68%), Gaps = 46/655 (7%)
 Frame = -2

Query: 4072 MRLIKGNEIRCDGAKGEVELNKHIEAEKKGGRGGVACKGQRLLREDELRIVDDSEDANSR 3893
            MRLI  NE     AK   ELN+HI A KK GRG VA +GQ L  EDELRI++D EDANSR
Sbjct: 1    MRLIHKNEDGPGVAKSVAELNQHIVAVKKEGRGRVAGEGQGLSEEDELRIIEDGEDANSR 60

Query: 3892 RSLSSVQLP-QSHRPHSQIQTQGRVCWERFLPVGSPKVLLVECDDSTRHVVTALLRNCSY 3716
            RSLSSVQLP  +HRP  Q+Q QGRVCWERFLPVGSPKVLLVE DDSTRH+V+ALLRNCSY
Sbjct: 61   RSLSSVQLPVHTHRPQPQVQPQGRVCWERFLPVGSPKVLLVESDDSTRHIVSALLRNCSY 120

Query: 3715 EVIAVSNGIEAWKILEDLNNQIDLVLTEVVTSGLSGIGLLSKIMSHKSCQNIPVIMMSTH 3536
            EV+ V NGIEAWKILEDL+NQIDLVLTEVVTSGLSGIGLLSKIMSHKSCQN PVIMMS+H
Sbjct: 121  EVVGVPNGIEAWKILEDLSNQIDLVLTEVVTSGLSGIGLLSKIMSHKSCQNTPVIMMSSH 180

Query: 3535 DSMGIVLKCLSKGAADYLVKPIRKNELKNLWQHVWRRCHXXXXXXXXSCIRNENCTGTKC 3356
            DSMG+VLKCLSKGA D+LVKPIRKNELKNLWQHVWRRCH        SC+RN    G+K 
Sbjct: 181  DSMGLVLKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCVRNGKSIGSKR 240

Query: 3355 AXXXXXXXXXXXXXDNRSIGLQAQNGSDNGSGTQSSWTKRAAEVESPQPAFAWDQETEPP 3176
            A             DNRSIGLQA++GSDNGSGTQSSWTKRAAEVESPQP   W+Q T+PP
Sbjct: 241  AEESDNDTDSNEEDDNRSIGLQARDGSDNGSGTQSSWTKRAAEVESPQPQSTWEQATDPP 300

Query: 3175 DSTCAQVIYPMPEAFASSWVPGASQEHDERDNQPHNVLMGKDLEIGVPKSTDSRINAPNI 2996
            DSTCAQVIYPM EAFASSW+PG+ QE D +D+Q  NV MGKDLEIGVP+ +DSR+N PN 
Sbjct: 301  DSTCAQVIYPMSEAFASSWMPGSMQELDVQDHQYDNVPMGKDLEIGVPRISDSRLNGPNK 360

Query: 2995 K----TTVEKNKSSQLDLNLKSDGQSFDEEIMELSNDNPKGEWIIQAMNIVAEVDGNNEH 2828
            K    TT E+N+ SQLDLN ++DG+SFDEE +E++ND PK EWI QAMN   +V+   EH
Sbjct: 361  KVKLATTAEENQYSQLDLNQENDGRSFDEENLEMNNDKPKSEWIKQAMNSPGKVE---EH 417

Query: 2827 HRGCILSDEPPVLYEISKTKDKVEQHAEDLPCLDLSLKRLGD---------DQNILRHSQ 2675
            HRG  +SD PP   EISK KDK  QH ED+P L LSLKRLGD         DQNI+  S+
Sbjct: 418  HRGNKVSDAPP---EISKIKDKGMQHVEDMPSLVLSLKRLGDIADTSTNVSDQNIVGRSE 474

Query: 2674 VSAFTRYNTGSICNEGQTANVGSCS------EAAKQXXXXXXXXXXXXXXXXXXXXXXXX 2513
            +SAFTRYN+G+  N+ QT NVGSCS      EAAKQ                        
Sbjct: 475  LSAFTRYNSGTTGNQSQTGNVGSCSPPNNSSEAAKQSHFDAPHQISNSSSNNNNMGSTTN 534

Query: 2512 S---KPALATDKTPGKSTVNGSHHSSMFQPLQSGQ----------KASAGPLNAGTLHEN 2372
                KPA+  DKTP KSTVN SHHS +F+P+QS            K   G +N G L EN
Sbjct: 535  KFFKKPAMDIDKTPAKSTVNCSHHSHVFEPVQSSHMSNNNLTASGKPGVGSVN-GMLQEN 593

Query: 2371 ----------DKGNQQFKIQXXXXXXXXXXXXXXXHSFQKLPS---QDEISKSMD 2246
                      +  +QQ KIQ               HS Q+LP    Q  +SKS D
Sbjct: 594  VPVNAVLPQENNVDQQLKIQ-----RHHHYHHYDVHSVQQLPKVSVQHNMSKSKD 643


>gb|ADV58925.1| bolting time control 1 [Beta vulgaris subsp. vulgaris]
            gi|319657097|gb|ADV58927.1| bolting time control 1 [Beta
            vulgaris subsp. vulgaris] gi|319657101|gb|ADV58929.1|
            bolting time control 1 [Beta vulgaris subsp. vulgaris]
          Length = 788

 Score =  684 bits (1766), Expect = 0.0
 Identities = 382/620 (61%), Positives = 434/620 (70%), Gaps = 43/620 (6%)
 Frame = -2

Query: 4072 MRLIKGNEIRCDGAKGEVELNKHIEAEKKGGRGGVACKGQRLLREDELRIVDDSEDANSR 3893
            MRLI  NE     AK   ELN+HI A KK GRG VA +GQ L  EDELRI++D EDANSR
Sbjct: 1    MRLIHKNEDGPGVAKSVAELNQHIVAVKKEGRGRVAGEGQGLSEEDELRIIEDGEDANSR 60

Query: 3892 RSLSSVQLP-QSHRPHSQIQTQGRVCWERFLPVGSPKVLLVECDDSTRHVVTALLRNCSY 3716
            RSLSSVQLP  +HR   Q+Q QGRVCWERFLPVGSPKVLLVE DDSTRH+V+ALLR CSY
Sbjct: 61   RSLSSVQLPVHTHRHQPQVQPQGRVCWERFLPVGSPKVLLVESDDSTRHIVSALLRKCSY 120

Query: 3715 EVIAVSNGIEAWKILEDLNNQIDLVLTEVVTSGLSGIGLLSKIMSHKSCQNIPVIMMSTH 3536
            EV+ V NGIEAWKILEDL+NQIDLVLTEVVTSGLSGIGLLSKIMSHKSCQN PVIMMS+H
Sbjct: 121  EVVGVPNGIEAWKILEDLSNQIDLVLTEVVTSGLSGIGLLSKIMSHKSCQNTPVIMMSSH 180

Query: 3535 DSMGIVLKCLSKGAADYLVKPIRKNELKNLWQHVWRRCHXXXXXXXXSCIRNENCTGTKC 3356
            DSMG+VLKCLSKGA D+LVKPIRKNELKNLWQHVWRRCH        SC+RN    G+K 
Sbjct: 181  DSMGLVLKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCVRNGKSIGSKR 240

Query: 3355 AXXXXXXXXXXXXXDNRSIGLQAQNGSDNGSGTQSSWTKRAAEVESPQPAFAWDQETEPP 3176
            A             DNRSIGLQA++GSDNGSGTQSSWTKRAAEVESPQP   W+Q T+PP
Sbjct: 241  AEESDNDTDINEEDDNRSIGLQARDGSDNGSGTQSSWTKRAAEVESPQPQSTWEQATDPP 300

Query: 3175 DSTCAQVIYPMPEAFASSWVPGASQEHDERDNQPHNVLMGKDLEIGVPKSTDSRINAPN- 2999
            DSTCAQVIYPM EAFASSW+PG+ QE D +D+Q  NV MGKDLEIGVP+ +DSR+N PN 
Sbjct: 301  DSTCAQVIYPMSEAFASSWMPGSMQELDGQDHQYDNVPMGKDLEIGVPRISDSRLNGPNK 360

Query: 2998 ---IKTTVEKNKSSQLDLNLKSDGQSFDEEIMELSNDNPKGEWIIQAMNIVAEVDGNNEH 2828
               + TT E+N+ SQLDLN ++DG+SFDEE +E++ND PK EWI QAMN   +V+   EH
Sbjct: 361  TVKLATTAEENQYSQLDLNQENDGRSFDEENLEMNNDKPKSEWIKQAMNSPGKVE---EH 417

Query: 2827 HRGCILSDEPPVLYEISKTKDKVEQHAEDLPCLDLSLKRLGD---------DQNILRHSQ 2675
             RG  +SD PP   EISK KDK  QH ED+P L LSLKRLGD         DQNI+  S+
Sbjct: 418  RRGNKVSDAPP---EISKIKDKGMQHVEDMPSLVLSLKRLGDIADTSTNVSDQNIVGRSE 474

Query: 2674 VSAFTRYNTGSICNEGQTANVGSCS------EAAKQXXXXXXXXXXXXXXXXXXXXXXXX 2513
            +SAFTRYN+G+  N+GQT NVGSCS      EAAKQ                        
Sbjct: 475  LSAFTRYNSGTTGNQGQTGNVGSCSPPNNSSEAAKQSHFDAPHQISNSSSNNNNMGSTTN 534

Query: 2512 S---KPALATDKTPGKSTVNGSHHSSMFQPLQSGQ----------KASAGPLNAGTLHEN 2372
                KPA+  DKTP KSTVN SHHS +F+P+QS            K   G +N G L EN
Sbjct: 535  KFFKKPAMDIDKTPAKSTVNCSHHSHVFEPVQSSHMSNNNLTASGKPGVGSVN-GMLQEN 593

Query: 2371 ----------DKGNQQFKIQ 2342
                      +  +QQ KIQ
Sbjct: 594  VPVNAVLPQENNVDQQLKIQ 613


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  682 bits (1760), Expect = 0.0
 Identities = 371/681 (54%), Positives = 479/681 (70%), Gaps = 13/681 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI +P+ LWTGKQVI+AIL+ IT    PFTV+K AKI   +F   +S+ N+      ++
Sbjct: 702  PAIWKPKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFF---KSRANE------DK 752

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
              Q++K+ +                A  EK                DE+ + VYKNELV+
Sbjct: 753  PCQEEKSDK---------------DAPAEKEP--------------DEEKMLVYKNELVR 783

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QFG+YGLVHTV EL GS  AG LLSVLSR+ TA+LQMHGFTCGV DLL+    D
Sbjct: 784  GVIDKGQFGEYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKD 843

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHENEHLDFSET--QVEIEKAIRRNGESAVALLDGMMR 716
            ++RKK L+     GE VH+ FIG ++E +       Q+ IEK IR +G+SA+A LD  M 
Sbjct: 844  EERKKQLEWCEKSGEAVHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMS 903

Query: 717  SKLNTLNSA--VTKLFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKR 890
            ++LNT  S+  ++ L  +GL+KP  KN +SLMT SGAKG   NFQQIS  LGQQELEGKR
Sbjct: 904  NELNTKTSSGVISNLLSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKR 963

Query: 891  VPRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRS 1070
            VPRMVSGKTLPCF PWD +AR+GG+I+DR+LTGLRPQE+YFHCMAGREGLVDTAVKTSRS
Sbjct: 964  VPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1023

Query: 1071 GYLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLI 1250
            GYLQRCLIKNLECL + YD+TVRDADGS++QF YGEDGVD+H+ +++ +++ LALNQ +I
Sbjct: 1024 GYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKELALNQDMI 1083

Query: 1251 VSKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNI--RRTRSKDLSNFLK 1424
              +   S       + Y+   +E+P  L ++A  FL+  +I   I     + +DL N   
Sbjct: 1084 YKR---SGGQLGAFNSYI---SELPEALKEKADRFLDDFSIMGRIASNLVKREDLYN--- 1134

Query: 1425 LVKNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMT 1604
            L+K K+ +SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMT
Sbjct: 1135 LMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1194

Query: 1605 ASVSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIY 1784
            AS+ IKTP MTCPL + +T +DA+ LA KL+++TVAD++E+MEVS+VPFAI+   +C IY
Sbjct: 1195 ASIDIKTPIMTCPLQEGRTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIY 1254

Query: 1785 KLKVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIK------- 1943
            KLK+KLY P  YP +  I++ED + TL+  +L ELE AI+ H+ LLSRI+GIK       
Sbjct: 1255 KLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESR 1314

Query: 1944 SEIQPKGSDDMNGDVSESKSQ 2006
            S    +  +D+ GD+S  + +
Sbjct: 1315 SRASGEADEDVAGDMSHREER 1335


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score =  677 bits (1748), Expect = 0.0
 Identities = 362/673 (53%), Positives = 476/673 (70%), Gaps = 6/673 (0%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI +P+ LWTGKQVISA+L  IT+GS PFTV+K AKI   +F   +++  +G  +T ++
Sbjct: 686  PAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFF---KTRMREGKKRT-KD 741

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             S KK                                         DED + +YKN+LV+
Sbjct: 742  TSIKKDEP--------------------------------------DEDKLLIYKNDLVR 763

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G++DK QFG YG+VHTVQE YGS+ AG LLS LSR+ T FLQMHGFTCGV DLLL +  D
Sbjct: 764  GVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSALSRLFTNFLQMHGFTCGVDDLLLTEGKD 823

Query: 543  KQRKKLLQVSLNCGEDVHQQFIG-HENEHLDFSETQVEIEKAIRRNGESAVALLDGMMRS 719
             +R   L+     G+ VH++FIG  E +++D    Q+ +EK IR NGE+A+  LD  M S
Sbjct: 824  SERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMIS 883

Query: 720  KLNTLNSA--VTKLFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRV 893
             LN+  S+  + +L  EG++KP  KNW+SLMT SGAKG   NFQQIS  LGQQELEGKRV
Sbjct: 884  NLNSRTSSGVLKELLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRV 943

Query: 894  PRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSG 1073
            PRMVSGKTLPCF  WD S RAGGFI DR+LT LRPQE+YFHCMAGREGLVDTAVKTSRSG
Sbjct: 944  PRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSG 1003

Query: 1074 YLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLIV 1253
            YLQRCL+KNLECL V YD+TVRDADGSIIQF YGEDGVD+H+ +++ ++EAL+ N++L+ 
Sbjct: 1004 YLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVY 1063

Query: 1254 SKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLSNFLKLVK 1433
            S N   ++D++  S Y+   N++P+ L  +A++F+  ++     R + S   +NFL+L++
Sbjct: 1064 S-NCCRELDES--SPYI---NKLPDALKGKAEKFIRDSSSKQ--RNSGSMTHTNFLQLME 1115

Query: 1434 NKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASV 1613
            +KY  SLAQPGEPVG++A+QS+GEP+TQMTLNTFH AGRGEMNVTLGIPRLQEIL  AS 
Sbjct: 1116 HKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASA 1175

Query: 1614 SIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYKLK 1793
             IKTP MTCPL  +K+ +DA +LA K+K+ITVAD+IE+M+VS+VP  ++   ICSIYKL 
Sbjct: 1176 HIKTPFMTCPLRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLM 1235

Query: 1794 VKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGI---KSEIQPKG 1964
            +KL++P+ YP +T +TL+D + TL+  ++  LE AIE ++ LL++I+GI   K++ QP  
Sbjct: 1236 MKLHKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNS 1295

Query: 1965 SDDMNGDVSESKS 2003
            S+    D S  K+
Sbjct: 1296 SNGAEDDPSNGKT 1308


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  674 bits (1740), Expect = 0.0
 Identities = 378/675 (56%), Positives = 470/675 (69%), Gaps = 7/675 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PA+ +P+ LWTGKQV++A+LD IT+GS PF V+K  KI R +   DE             
Sbjct: 687  PAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFLILDEG------------ 734

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             + KKK   +  K+ A  L                           D+D + ++KNELV+
Sbjct: 735  -NSKKKEHTKVDKLKAARL---------------------------DDDSLLIFKNELVR 766

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QFG YGLVHTVQELYGS+ AG LLSV+SR+ T FLQ HGFTCGV DLLL +  D
Sbjct: 767  GVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMD 826

Query: 543  KQRKKLLQVSLNCGEDVHQQFIG-HENEHLDFSETQVEIEKAIRRNGESAVALLDGMMRS 719
            K+R+K LQ+    GE VH  F+   + E LD    Q+ IEK I  NGE+A+  LD  M S
Sbjct: 827  KEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTS 886

Query: 720  KLN--TLNSAVTK-LFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKR 890
            +LN  T NS V K L  EGL+KP  KN +SLMT SGAKGGT NFQQIS  LGQQ+LEGKR
Sbjct: 887  QLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKR 946

Query: 891  VPRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRS 1070
            VPRMVSGKTLPCF PWD ++RAGGFI DR+LTGLRPQE+YFHCMAGREGLVDTAVKTSRS
Sbjct: 947  VPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1006

Query: 1071 GYLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLI 1250
            GYLQRCLIKNLE L + YD+TVRDADGS+IQF+YGEDGVD+HK  ++ ++EALA NQ ++
Sbjct: 1007 GYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDML 1066

Query: 1251 VSKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLSNFLKLV 1430
              +N   Q+      KY    NE+P+ L +E  EF+  +     +     K+  +F++L+
Sbjct: 1067 Y-ENSHHQL-----GKYNVFINELPSAL-REKGEFIYNSLSKDKVPGLVLKE--DFIRLL 1117

Query: 1431 KNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTAS 1610
            +NKY  SLAQPGEPVG++AAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTAS
Sbjct: 1118 ENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTAS 1177

Query: 1611 VSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYKL 1790
              IKTP MTCPL +  + D A+ LA+KLK+ITVAD+IE+M V++VPF+  K EICSIYKL
Sbjct: 1178 QDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKL 1237

Query: 1791 KVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIK---SEIQPK 1961
            ++  Y  E    H  I+ ED ++TL+  +L+ELE  IE+ ++LLS+I GIK    + Q K
Sbjct: 1238 RIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKXFVPDSQSK 1297

Query: 1962 GSDDMNGDVSESKSQ 2006
            GS +   +VS S+ +
Sbjct: 1298 GSSE-GDEVSSSRQE 1311


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score =  672 bits (1735), Expect = 0.0
 Identities = 363/676 (53%), Positives = 478/676 (70%), Gaps = 8/676 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI++P  LWTGKQVI+A+L+QIT+G  PFTV+K  K+  ++F                 
Sbjct: 708  PAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFF----------------- 750

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
                 K   R  K ++GDLT             +  KI+E++  N++ED + + KNE V 
Sbjct: 751  -----KCRSREVKPNSGDLT-------------KKKKIDESWKQNLNEDKLLIRKNEFVC 792

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QF  YGLVHTV ELYGS+AAG LLSV SR+ T FLQ+HGFTCGV DL++ +  D
Sbjct: 793  GVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQIHGFTCGVDDLIILKDMD 852

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHENE-HLDFSETQVEIEKAIRRNGESAVALLDGMMRS 719
            ++R K LQ   N GE V ++  G + +  +D  + +  IE+ +  +GESA+A LD   RS
Sbjct: 853  EERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLD---RS 909

Query: 720  KLNTLNSAVTK-----LFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEG 884
             +N LN   +K     L  +GL+K    N +SLMT+SGAKG   NFQQIS  LGQQ+LEG
Sbjct: 910  IVNDLNQCSSKGVMNDLLSDGLLKTPGMNCISLMTISGAKGSKVNFQQISSHLGQQDLEG 969

Query: 885  KRVPRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTS 1064
            KRVPRMVSGKTLPCF PWD S RAGGFISDR+L+GLRPQE+YFHCMAGREGLVDTAVKTS
Sbjct: 970  KRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTS 1029

Query: 1065 RSGYLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQK 1244
            RSGYLQRCL+KNLE L ++YD TVRDADGSIIQF+YGEDGVD+H+ +++++++ LA+NQ 
Sbjct: 1030 RSGYLQRCLMKNLESLKINYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELAINQD 1089

Query: 1245 LIVSKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDL--SNF 1418
            +++ +     +  A  + Y+   +++P  L   A++F+E  A+ MN  R  SK +     
Sbjct: 1090 MVLQRCSEDMLSGA--NSYI---SDLPISLKNGAEKFVE--AMPMN-ERIASKFVRQEEL 1141

Query: 1419 LKLVKNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEIL 1598
            LKLVK+K++ SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEIL
Sbjct: 1142 LKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1201

Query: 1599 MTASVSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICS 1778
            MTA+  IKTP MTCPLLK KTK+DA  +  KL++ITVAD+I++M++S+VP+ + KNE+CS
Sbjct: 1202 MTAAADIKTPIMTCPLLKGKTKEDANDITGKLRKITVADIIKSMDLSVVPYTVYKNEVCS 1261

Query: 1779 IYKLKVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKSEIQP 1958
            I+KLK+ LY+PE YP HT IT +D + T+   +L +LE AIE H+ +L RI GI ++  P
Sbjct: 1262 IHKLKINLYKPEHYPKHTDITEKDWEETMTVVFLRKLEDAIEIHMKMLHRIRGICNDKGP 1321

Query: 1959 KGSDDMNGDVSESKSQ 2006
            +  ++ + D S S  Q
Sbjct: 1322 EAGNETDNDDSVSGKQ 1337


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score =  672 bits (1735), Expect = 0.0
 Identities = 365/677 (53%), Positives = 480/677 (70%), Gaps = 9/677 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI++P  LWTGKQVI+A+L+QIT+G  PFTV+K  K+  ++F                 
Sbjct: 706  PAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFF----------------- 748

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
                 K   R  K ++GDLT             +  +I+E++  N++ED + + KNE V 
Sbjct: 749  -----KCRSREVKPNSGDLT-------------KKKEIDESWKQNLNEDKLHIRKNEFVC 790

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QF  YGLVHTV ELYGS+AAG LLSV SR+ T FLQ HGFTCGV DL++ +  D
Sbjct: 791  GVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMD 850

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHENE-HLDFSETQVEIEKAIRRNGESAVALLDGMMRS 719
            ++R K LQ   N GE V ++  G + +  +D  + +  IE+ +  +GESA+A LD   RS
Sbjct: 851  EERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLD---RS 907

Query: 720  KLNTLNSAVTK-----LFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEG 884
             +N LN   +K     L  +GL+K   +N +SLMT+SGAKG   NFQQIS  LGQQ+LEG
Sbjct: 908  IVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEG 967

Query: 885  KRVPRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTS 1064
            KRVPRMVSGKTLPCF PWD S RAGGFISDR+L+GLRPQE+YFHCMAGREGLVDTAVKTS
Sbjct: 968  KRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTS 1027

Query: 1065 RSGYLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQK 1244
            RSGYLQRCL+KNLE L V+YD TVRDADGSIIQF+YGEDGVD+H+ +++++++ L +NQ 
Sbjct: 1028 RSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELTINQD 1087

Query: 1245 LIVSKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDL--SNF 1418
            +++ K     +  A  S Y+   +++P  L K A++F+E  A+ MN  R  SK +     
Sbjct: 1088 MVLQKCSEDMLSGA--SSYI---SDLPISLKKGAEKFVE--AMPMN-ERIASKFVRQEEL 1139

Query: 1419 LKLVKNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEIL 1598
            LKLVK+K++ SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEIL
Sbjct: 1140 LKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1199

Query: 1599 MTASVSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICS 1778
            MTA+ +IKTP MTCPLLK KTK+DA  +  +L++ITVAD+I++ME+S+VP+ + +NE+CS
Sbjct: 1200 MTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCS 1259

Query: 1779 IYKLKVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKSEIQ- 1955
            I+KLK+ LY+PE YP HT IT ED + T++  +L +LE AIE H+ +L RI GI +++  
Sbjct: 1260 IHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHNDVTG 1319

Query: 1956 PKGSDDMNGDVSESKSQ 2006
            P   ++ + D S S  Q
Sbjct: 1320 PIAGNETDNDDSVSGKQ 1336


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score =  672 bits (1733), Expect = 0.0
 Identities = 361/673 (53%), Positives = 472/673 (70%), Gaps = 6/673 (0%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI +P+ LWTGKQVISA+L  IT+GS PFTV+K AKI   +F   +++  +G  +T ++
Sbjct: 682  PAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFF---KTRMREGKKRT-KD 737

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             S KK                                         DED + +Y+N+LV+
Sbjct: 738  TSIKKDEP--------------------------------------DEDKLLIYRNDLVR 759

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G++DK QFG YG+VHTVQE YGS+ AG LLS LSR+ T FLQMHGFTCGV DLLL +  D
Sbjct: 760  GVVDKAQFGDYGIVHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLLTEGKD 819

Query: 543  KQRKKLLQVSLNCGEDVHQQFIG-HENEHLDFSETQVEIEKAIRRNGESAVALLDGMMRS 719
             +R   L+     G+ VH++FIG  E +++D    Q+ +EK IR NGE+A+  LD  M S
Sbjct: 820  SERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMIS 879

Query: 720  KLNTLNSA--VTKLFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRV 893
             LN+  S   +  L  EG++KP  KNW+SLMT SGAKG   NFQQIS  LGQQELEGKRV
Sbjct: 880  NLNSRTSTGVLKVLLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRV 939

Query: 894  PRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSG 1073
            PRMVSGKTLPCF  WD S RAGGFI DR+LT LRPQE+YFHCMAGREGLVDTAVKTSRSG
Sbjct: 940  PRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSG 999

Query: 1074 YLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLIV 1253
            YLQRCL+KNLECL V YD+TVRDADGSIIQF YGEDGVD+H+ +++ ++EAL+ N++L+ 
Sbjct: 1000 YLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVY 1059

Query: 1254 SKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLSNFLKLVK 1433
            S N   ++D +  S Y+   N++P+ L  +A++F+  ++     R + S   +NFL L++
Sbjct: 1060 S-NCCRELDKS--SPYI---NKLPDALKGKAEKFILDSSSKQ--RNSGSMTHTNFLHLME 1111

Query: 1434 NKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASV 1613
            +KY  SLAQPGEPVG++A+QS+GEP+TQMTLNTFH AGRGEMNVTLGIPRLQEIL  AS 
Sbjct: 1112 HKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASA 1171

Query: 1614 SIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYKLK 1793
             IKTP MTCPL  +K+ +DA +LA K+K+ITVAD+IE+M+VS+VP  ++   ICSIYKL 
Sbjct: 1172 HIKTPFMTCPLRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLM 1231

Query: 1794 VKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGI---KSEIQPKG 1964
            +KL++P+ YP +T +TL+D + TL+  ++  LE AIE ++ LL++I+GI   K++ QP  
Sbjct: 1232 MKLHKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNS 1291

Query: 1965 SDDMNGDVSESKS 2003
            S+    D S  K+
Sbjct: 1292 SNGAEDDPSNGKT 1304


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score =  671 bits (1732), Expect = 0.0
 Identities = 376/675 (55%), Positives = 470/675 (69%), Gaps = 7/675 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PA+ +P+ LWTGKQV++A+LD IT+GS PF V+K  KI R +F   +   N         
Sbjct: 681  PAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNN--------- 731

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             S KKK   +  K+ A                             +D+D + ++KNELV+
Sbjct: 732  -SSKKKEHTKVDKLKAA---------------------------RLDDDSLLIFKNELVR 763

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QFG YGLVHTVQELYGS+ AG LLSV+SR+ T FLQ HGFTCGV DLLL +  D
Sbjct: 764  GVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMD 823

Query: 543  KQRKKLLQVSLNCGEDVHQQFIG-HENEHLDFSETQVEIEKAIRRNGESAVALLDGMMRS 719
            K+R+K LQ+    GE VH  F+   + E LD    Q+ IEK I  NGE+A+  LD  M S
Sbjct: 824  KEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTS 883

Query: 720  KLN--TLNSAVTK-LFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKR 890
            +LN  T NS V K L  EGL+KP  KN +SLMT SGAKGGT NFQQIS  LGQQ+LEGKR
Sbjct: 884  QLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKR 943

Query: 891  VPRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRS 1070
            VPRMVSGKTLPCF PWD ++RAGGFI DR+LTGLRPQE+YFHCMAGREGLVDTAVKTSRS
Sbjct: 944  VPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1003

Query: 1071 GYLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLI 1250
            GYLQRCLIKNLE L + YD+TVRDADGS+IQF+YGEDGVD+HK  ++ ++EALA NQ ++
Sbjct: 1004 GYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDML 1063

Query: 1251 VSKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLSNFLKLV 1430
              +N   Q+      KY    NE+P+ L +E  EF+  +     +     K+  +F++L+
Sbjct: 1064 Y-ENSHHQL-----GKYNVFINELPSAL-REKGEFIYNSLSKDKVPGLVLKE--DFIRLL 1114

Query: 1431 KNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTAS 1610
            +NKY  SLAQPGEPVG++AAQSIGEPSTQMTLNTFHH GRGEMNVTLGI RLQEILMTAS
Sbjct: 1115 ENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLGILRLQEILMTAS 1174

Query: 1611 VSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYKL 1790
              IKTP MTCPL +  + D A+ LA+KLK+ITVAD+IE+M V++VPF+  K EICSIYKL
Sbjct: 1175 QDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKL 1234

Query: 1791 KVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKS---EIQPK 1961
            ++  Y  E    H  I+ ED ++TL+  +L+ELE  IE+ ++LLS+I GIK+   + Q K
Sbjct: 1235 RIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQSK 1294

Query: 1962 GSDDMNGDVSESKSQ 2006
            GS +   +VS S+ +
Sbjct: 1295 GSSE-GDEVSSSRQK 1308


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score =  667 bits (1721), Expect = 0.0
 Identities = 366/681 (53%), Positives = 476/681 (69%), Gaps = 13/681 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFG-------RDESKKNDG 161
            PAI +P+ LWTGKQVI+A+L+ ITRG  PF V++  K+ +++F        + + KKND 
Sbjct: 710  PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND- 768

Query: 162  SAKTFEEVSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFV 341
              K  +     K  S + K++  G       K  EEK   +    E+  S    E+ + +
Sbjct: 769  KGKLSKTNKMHKDKSGKKKEVVEG-------KPGEEKEAEKNKSKEKELS----EEKLLI 817

Query: 342  YKNELVQGIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDL 521
            YKN+LV+G+IDK QF  YGLVHTVQELYGS+ AG LLS LSR+ T FLQMHGFTCGV DL
Sbjct: 818  YKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 877

Query: 522  LLQQPYDKQRKKLLQVSLNCGEDVHQQFIGHEN-EHLDFSETQVEIEKAIRRNGESAVAL 698
            L+ +  +++RK  L  S   G+ VH + +  E+   +D  + + EIEKA+R  G++AVA 
Sbjct: 878  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 937

Query: 699  LDGMMRSKLN--TLNSAVTKLFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQ 872
             D  M S+LN  T +S + +L  EGL+KP  KNW+SLMT SGAKG   NFQQIS  LGQQ
Sbjct: 938  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 997

Query: 873  ELEGKRVPRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTA 1052
            ELEGKRVPRMVSGKTLP F PWD + RAGGFI DR+LTGLRPQE+YFHCMAGREGLVDTA
Sbjct: 998  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 1057

Query: 1053 VKTSRSGYLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALA 1232
            VKTSRSGYLQRCLIKNLECL + YDY+VRDADGSI+QF YGEDGVD+H+ +++ +++ALA
Sbjct: 1058 VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALA 1117

Query: 1233 LNQKLIVSKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLS 1412
             NQ++I  K    Q+D +  + Y+    E+P+ L   A++F +K         +      
Sbjct: 1118 ANQEMIYKKCS-GQLDAS--NAYI---MELPDALKDNAEKFADKFL-------SNEMAKQ 1164

Query: 1413 NFLKLVKNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQE 1592
            +FLKLVK+K+ +SLAQPGEPVG++A+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQE
Sbjct: 1165 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1224

Query: 1593 ILMTASVSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEI 1772
            IL  AS  IKTP +TCPLL  KT+DDA++LA KLK+ITVAD+++ + V +  F     + 
Sbjct: 1225 ILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISVKVRAFTSHDGQA 1284

Query: 1773 CSIYKLKVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIK--- 1943
            CS+Y L ++LY+P+ YP +T ITLED +  L+  ++ ELE  I+ HLLLLS+I GIK   
Sbjct: 1285 CSVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSKINGIKNVA 1344

Query: 1944 SEIQPKGSDDMNGDVSESKSQ 2006
            S +  K S++ + D S + SQ
Sbjct: 1345 SGLTQKASNETDQDGSGNVSQ 1365


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score =  665 bits (1717), Expect = 0.0
 Identities = 363/680 (53%), Positives = 478/680 (70%), Gaps = 11/680 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI++P  LWTGKQVI+ +L+ IT+G  PFTV+K  K+  ++F                 
Sbjct: 694  PAILKPVPLWTGKQVITTVLNLITKGHPPFTVEKATKLPVDFF----------------- 736

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
                 K   R  K + GDLT             +   I+E++  +++ED + + KNE V 
Sbjct: 737  -----KCRSREVKPNTGDLT-------------KKKDIDESWKQDLNEDKLLIRKNEFVC 778

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G+IDK QF  +G+VHTV ELYGS+AAG LLSV SR+ TAFLQ+HGFTCGV DL++ +  D
Sbjct: 779  GVIDKAQFADFGMVHTVHELYGSNAAGNLLSVFSRLFTAFLQIHGFTCGVDDLIILKDMD 838

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHE-NEHLDFSETQVEIEKAIRRNGESAVALLDGMMRS 719
            ++R K LQ     GE V ++  G + +  +D  + +  IE+ +  +GESA+A LD   RS
Sbjct: 839  EERTKQLQECEKVGERVLRKTFGIDVDRQIDPQDMRSRIERILYEDGESALASLD---RS 895

Query: 720  KLNTLNSAVTK-----LFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEG 884
             +N LN   +K     L  +GL+K   KN +SLMT+SGAKG   NFQQIS  LGQQ+LEG
Sbjct: 896  IVNDLNQCSSKGVMNDLLSDGLLKTPGKNCISLMTISGAKGSKVNFQQISSHLGQQDLEG 955

Query: 885  KRVPRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTS 1064
            KRVPRMVSGKTLPCF PWD S RAGGFISDR+L+GLRPQE+YFHCMAGREGLVDTAVKTS
Sbjct: 956  KRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTS 1015

Query: 1065 RSGYLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQK 1244
            RSGYLQRCL+KNLE L V+YD TVRDADGSIIQF+YGEDGVD+H+ +++ +++ L +NQ 
Sbjct: 1016 RSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIGKFKELTVNQD 1075

Query: 1245 LIVSKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDL--SNF 1418
            +++ +     +  +  S Y+   +++P  L K+A++F+E  A+ MN  R  SK +     
Sbjct: 1076 MVLQRCSEDMLSGS--SSYI---SDLPISLKKDAEKFVE--AMPMN-ERIASKFVRQEEL 1127

Query: 1419 LKLVKNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEIL 1598
            LKLVK+KY+ SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEIL
Sbjct: 1128 LKLVKSKYFESLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187

Query: 1599 MTASVSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICS 1778
            MTA+  IKTP MTCPLLK KTK+DA  +  KL++ITVAD+I++ME+S+VP+ I KN+ICS
Sbjct: 1188 MTAAADIKTPIMTCPLLKGKTKEDANDITDKLRKITVADIIKDMELSVVPYTIHKNDICS 1247

Query: 1779 IYKLKVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKSEIQ- 1955
            I+KLK+ LY+PE YP +T IT ED + T++  +L +LE AIE H+ +L R+ GI++ +Q 
Sbjct: 1248 IHKLKINLYKPEHYPKNTDITEEDWEETMKVVFLRKLEDAIEIHMKMLHRMRGIRNFVQD 1307

Query: 1956 --PKGSDDMNGDVSESKSQT 2009
              P   ++ + D S S  QT
Sbjct: 1308 TSPTAGNETDNDNSISGKQT 1327


>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score =  664 bits (1713), Expect = 0.0
 Identities = 361/676 (53%), Positives = 469/676 (69%), Gaps = 8/676 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYFGRDESKKNDGSAKTFEE 182
            PAI +P+ LWTGKQVISA+L  ITR S PFTV+K AKI   +F                 
Sbjct: 679  PAIWKPEPLWTGKQVISALLYYITRDSPPFTVEKNAKIPSNFFK---------------- 722

Query: 183  VSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVYKNELVQ 362
             +Q +   R T+  S                    +K+E +     DED + +YKN+LV+
Sbjct: 723  -TQVRDGKRHTRDKSR-------------------NKVEPD-----DEDKLLIYKNDLVR 757

Query: 363  GIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLLLQQPYD 542
            G++DK QFG YG++HTVQELYGS  AG LLS LSR+ T FLQMHGFTCGV DL++ +  D
Sbjct: 758  GVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALSRLFTTFLQMHGFTCGVDDLMITEEKD 817

Query: 543  KQRKKLLQVSLNCGEDVHQQFIGHENEHL-DFSETQVEIEKAIRRNGESAVALLDGMMRS 719
             +R   L+     G+ VH++FIG  N  + D    Q+ IEK IR NGE+A+  LD  M S
Sbjct: 818  VERMDQLRSCEEIGDIVHREFIGVMNSDIIDPITLQLNIEKKIRSNGEAALTYLDRKMTS 877

Query: 720  KLNTLNSA--VTKLFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRV 893
             LN+  S+  +  L  +G++KP  KN +SLMT SGAKG   NFQQIS  LGQQELEGKRV
Sbjct: 878  NLNSRTSSGILKDLLSDGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRV 937

Query: 894  PRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAVKTSRSG 1073
            PRMVSGKTLPCF PWD S RAGGFI DR+LTGL PQE+YFHCMAGREGLVDTAVKTSRSG
Sbjct: 938  PRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSG 997

Query: 1074 YLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALALNQKLIV 1253
            YLQRCL+KNLECL V YD+TVRDADGSIIQF YGEDGVD+H  +++ ++EAL+ N++L+ 
Sbjct: 998  YLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHHTSFINKFEALSTNKELVY 1057

Query: 1254 SKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLSNFLKLVK 1433
              N   Q+D +  S Y+   N++P+ L ++A+ F      ++  R   S   + FLKL++
Sbjct: 1058 G-NCCRQLDRS--SPYI---NKLPDALKEKAENFFRD---SLKQRNLGSLKRAEFLKLME 1108

Query: 1434 NKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASV 1613
            +KY   LAQPGE VG++A+QS+GEP+TQMTLNTFH AGRGEMNVTLGIPRLQEI+M A+ 
Sbjct: 1109 HKYVSCLAQPGESVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEIVMAAAR 1168

Query: 1614 SIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEICSIYKLK 1793
             IKTP MTCPL  +K+ ++A  LA KLK+ITVAD+I++M+VS+VP ++   ++CSIYKL 
Sbjct: 1169 DIKTPFMTCPLRSNKSMEEAICLADKLKKITVADIIKSMKVSVVPVSVLGGQVCSIYKLV 1228

Query: 1794 VKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIKS-----EIQP 1958
            +KLY+P+ YP ++ ITLED + TL+  ++ ELE AIE H+ LLS+I+GIK      +   
Sbjct: 1229 MKLYKPKQYPKYSDITLEDWEDTLRISFVRELEDAIENHMALLSKISGIKKFKTDPQSHS 1288

Query: 1959 KGSDDMNGDVSESKSQ 2006
              S+D +G+ SES+++
Sbjct: 1289 NSSEDAHGNGSESETK 1304


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score =  664 bits (1713), Expect = 0.0
 Identities = 362/680 (53%), Positives = 473/680 (69%), Gaps = 12/680 (1%)
 Frame = +3

Query: 3    PAIVRPQRLWTGKQVISAILDQITRGSLPFTVKKRAKIAREYF------GRDESKKNDGS 164
            PAI +P+ LWTGKQVI+A+L+ ITRG  PF V++  K+ +++F       +   +K +  
Sbjct: 710  PAIWKPEPLWTGKQVITAVLNHITRGRPPFIVERGGKLPQDFFKTRFNADKQSGRKKNDK 769

Query: 165  AKTFEEVSQKKKNSRRTKKMSAGDLTSNINKASEEKATGRMSKIEENYSHNIDEDVVFVY 344
             K  +     K  S + K++  G       K  EEK   +    E+  S    E+ + +Y
Sbjct: 770  GKLSKTNKMHKDKSGKKKEVVEG-------KPGEEKEAEKNKSKEKELS----EEKLLIY 818

Query: 345  KNELVQGIIDKEQFGKYGLVHTVQELYGSSAAGKLLSVLSRVLTAFLQMHGFTCGVYDLL 524
            KN+LV+G+IDK QF  YGLVHTVQELYGS+ AG LLS LSR+ T FLQMHGFTCGV DLL
Sbjct: 819  KNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 878

Query: 525  LQQPYDKQRKKLLQVSLNCGEDVHQQFIGHEN-EHLDFSETQVEIEKAIRRNGESAVALL 701
            + +  +++RK  L  S   G+ VH + +  E+   +D  + + EIEKA+R  G++AVA  
Sbjct: 879  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 938

Query: 702  DGMMRSKLN--TLNSAVTKLFPEGLIKPFRKNWLSLMTLSGAKGGTFNFQQISLLLGQQE 875
            D  M S+LN  T +S +  L  EGL+KP  KNW+SLMT SGAKG   NFQQIS  LGQQE
Sbjct: 939  DMKMTSQLNKHTSSSVINDLLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 998

Query: 876  LEGKRVPRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREGLVDTAV 1055
            LEGKRVPRMVSGKTLP F PWD + RAGGFI DR+LTGLRPQE+YFHCMAGREGLVDTAV
Sbjct: 999  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 1058

Query: 1056 KTSRSGYLQRCLIKNLECLSVHYDYTVRDADGSIIQFRYGEDGVDIHKKNYMQEYEALAL 1235
            KTSRSGYLQRCLIKNLECL + YDY+VRDADGSI+QF YGEDGVD+H+ +++ +++ALA 
Sbjct: 1059 KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1118

Query: 1236 NQKLIVSKNPLSQMDDACVSKYVEEDNEVPNQLAKEAKEFLEKNAIAMNIRRTRSKDLSN 1415
            NQ++I  K    Q+D +  + Y+    E+P+ L   A++F +K         +      +
Sbjct: 1119 NQEMIYKKCS-GQLDAS--NAYI---MELPDALKDNAEKFADKFL-------SNEMAKQD 1165

Query: 1416 FLKLVKNKYYMSLAQPGEPVGIIAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1595
            FLKLVK+K+ +SLAQPGEPVG++AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEI
Sbjct: 1166 FLKLVKHKFVLSLAQPGEPVGLLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1225

Query: 1596 LMTASVSIKTPTMTCPLLKSKTKDDAEQLASKLKRITVADLIENMEVSIVPFAIEKNEIC 1775
            L  AS  IKTP +TCPLL  KT+DDA++LA KLK+ITVAD+++ + V +  F     + C
Sbjct: 1226 LTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISVKVRAFTSHDGQAC 1285

Query: 1776 SIYKLKVKLYEPELYPPHTCITLEDCQSTLQYKYLDELEAAIEKHLLLLSRIAGIK---S 1946
            ++Y L ++LY+P+ YP +T ITLED +  L+  ++ ELE  I+ HLLLLS+I GIK   S
Sbjct: 1286 TVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSKINGIKNVAS 1345

Query: 1947 EIQPKGSDDMNGDVSESKSQ 2006
             +  K S++ + + S + SQ
Sbjct: 1346 GLTQKASNETDQEGSGNVSQ 1365