BLASTX nr result
ID: Achyranthes22_contig00005547
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes22_contig00005547
(5028 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB42622.1| putative polyprotein (aspartic proteinase, rever... 717 0.0
ref|NP_569141.1| polyprotein [Tobacco vein clearing virus] gi|64... 714 0.0
ref|YP_004300274.1| replicase [Sweet potato vein clearing virus]... 704 0.0
emb|CAC88785.1| putative polyprotein [Nicotiana tabacum] 588 e-165
emb|CAC88781.1| putative polyprotein [Nicotiana tabacum] 544 e-151
ref|XP_004247251.1| PREDICTED: putative enzymatic polyprotein-li... 525 e-145
ref|YP_004347415.1| replicase [Sweet potato caulimo-like virus] ... 509 e-141
ref|NP_056848.1| aspartic protease/reverse transcriptase [Cassav... 491 e-135
ref|NP_043933.1| hypothetical protein [Strawberry vein banding v... 375 e-100
emb|CCG14716.1| ORF V protein [Strawberry vein banding virus] 367 2e-98
gb|AEA39176.1| polyprotein [Dahlia mosaic virus] 362 7e-97
gb|AGQ49469.1| reverse transcriptase [Dahlia mosaic virus] 362 9e-97
emb|CAH68829.1| polyprotein [Carnation etched ring virus] 359 6e-96
ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus] g... 358 2e-95
gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10] 357 4e-95
gb|ADZ44590.1| polyprotein [Dahlia mosaic virus] 355 1e-94
sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu... 355 2e-94
ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic prote... 355 2e-94
gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus] 354 2e-94
gb|ABW80581.1| polyprotein [Dahlia mosaic virus] 354 3e-94
>emb|CAB42622.1| putative polyprotein (aspartic proteinase, reverse transcriptase,
ribonuclease H) [Nicotiana tabacum]
Length = 636
Score = 717 bits (1851), Expect = 0.0
Identities = 345/628 (54%), Positives = 475/628 (75%), Gaps = 4/628 (0%)
Frame = -1
Query: 3474 HILFKVIYPGFLNRYYSGLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEK 3301
+IL K+I G+ NRYY+ +VDTGA+A + NCLPE W+KL+ PI + GFN EG+ I
Sbjct: 5 YILSKIIVEGYYNRYYTPMVDTGAEANMCRHNCLPESKWEKLKTPIVVTGFNNEGSMITY 64
Query: 3300 YNEDIRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSETI 3121
+I+I+IW++ L I +Y Y+ +KDI+LG FL P II K + FT +P + +
Sbjct: 65 KARNIKIQIWDKILTIEEIYSYEFTNKDILLGMPFLDKLYPHIITKTHWWFT-TPCKQKL 123
Query: 3120 KAPRIRNQKRIKQPWIKGSSKVNQKVE--YKYVNNIEKCIFTVTQKEIIELKLKECYSEN 2947
A R+ N+ R PWIKGS K+ QK+E + +NIE IF++ + + ++ KL+ Y++N
Sbjct: 124 GAKRVNNKVRKTTPWIKGSEKITQKLENVIQSNHNIEIIIFSINKIKPLQDKLELLYNDN 183
Query: 2946 PLENWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSKHCS 2767
PL+ W KH+T++KIELI+ +S+I QKP D+ EFKMHI EL I+ SNSKH S
Sbjct: 184 PLQGWEKHQTKIKIELIDENSIITQKPLKYNFNDLTEFKMHIKELLDNNYIQESNSKHTS 243
Query: 2766 SAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDCKSG 2587
AFIV KHSEQKR KSRMVIDYRNLNAKTKTYNYP+PNKIL I++IQGY +FSKFDCKSG
Sbjct: 244 PAFIVNKHSEQKRGKSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGYNYFSKFDCKSG 303
Query: 2586 FHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLDNCVVYIDDI 2407
F+HLKL +ESK LTAF VP GFYEWNVLPFGYKNAPGR+Q FMD+ +NQL+NC++YIDDI
Sbjct: 304 FYHLKLEDESKKLTAFTVPQGFYEWNVLPFGYKNAPGRYQHFMDNYFNQLENCIIYIDDI 363
Query: 2406 LLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQPHIAE 2227
LL++RT EH++++E FI+I + GISLS+KK E+ KNQIEFLG +ID +G+KMQ H+ +
Sbjct: 364 LLYSRTENEHIKLLEKFIHIVEISGISLSKKKAEVMKNQIEFLGIQIDKNGIKMQTHVVQ 423
Query: 2226 KIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDKNIIN 2047
KII + ++T+K+LQSFLG +NQ+RE+IPKL+ LKPL +KLKKD+++ + ++DK I
Sbjct: 424 KIINLNETLDTKKKLQSFLGLVNQVREYIPKLAENLKPLQKKLKKDIEYHFDEKDKIHIQ 483
Query: 2046 NLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKEEHLCRYNSGTFKD 1867
+K +CK+LPKLY+PD +K+FT+I+ETD+S S+GGVLK++Y+ EK EH CRY SG++ +
Sbjct: 484 KIKNMCKKLPKLYFPDEKKQFTYIVETDSSDHSYGGVLKYKYDNEKIEHHCRYYSGSYTE 543
Query: 1866 NELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDNSTVKAWITQKLQNTIIRKEINKL 1687
+L W+INRKEL + L+ FE YIV+ KFI+R DN+ VK WIT+K+Q+++ KEI +L
Sbjct: 544 PQLKWEINRKELFGLYKCLLAFEPYIVYNKFIVRTDNTQVKWWITRKVQDSVTTKEIRRL 603
Query: 1686 LTDINAYNFDVELIKSEENVYADKLSRE 1603
+ +I + F +E+I++++NV AD LSR+
Sbjct: 604 VLNIQNFTFTIEVIRTDKNVIADYLSRQ 631
>ref|NP_569141.1| polyprotein [Tobacco vein clearing virus]
gi|6425075|gb|AAF08289.1|AF190123_3 polyprotein [Tobacco
vein clearing virus]
Length = 635
Score = 714 bits (1843), Expect = 0.0
Identities = 348/632 (55%), Positives = 474/632 (75%), Gaps = 5/632 (0%)
Frame = -1
Query: 3483 MASHILFKVIYPGFLNRYYSGLVDTGAQATIFSENCLP--EWKKLEKPINMMGFNGEGNR 3310
M +IL K+I G+ NRYY+ ++DTGA+A I NCLP +W+KL+ P+ + GFN EG+
Sbjct: 1 MKIYILAKIIVEGYYNRYYTPMIDTGAEANICKYNCLPTDKWEKLKTPMVVTGFNNEGSM 60
Query: 3309 IEKYNEDIRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNS 3130
I +++I+IW++ L I +Y ++ +KD++LG FL+ P II K + FT +P
Sbjct: 61 INYKARNVKIQIWDKILTIEEIYNFEFTTKDMLLGMPFLEKLYPHIITKTHWWFT-TPCK 119
Query: 3129 ETIKAPRIRNQKRIKQPWIKGSSKVNQKVEYKYVNN---IEKCIFTVTQKEIIELKLKEC 2959
+ A R+ N++R WI+GS K+ QK+E N +E IFT+ + +II+ KL++
Sbjct: 120 NKVGAKRVNNKQRKTTEWIRGSEKITQKLENINKNTTTQLEIIIFTIDKVKIIQKKLEKL 179
Query: 2958 YSENPLENWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNS 2779
Y++NPL+ W KHKT+VKIELIE +S+I QKP D+ EFK+HI +L I+ SNS
Sbjct: 180 YNDNPLQGWEKHKTKVKIELIEENSIITQKPLKYNFNDLTEFKIHIKDLLDNKYIQESNS 239
Query: 2778 KHCSSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFD 2599
KH S AFIV KHSEQKR KSRMVIDYRNLNAKTKTYNYP+PNKIL I++IQGY +FSKFD
Sbjct: 240 KHTSPAFIVNKHSEQKRGKSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGYNYFSKFD 299
Query: 2598 CKSGFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLDNCVVY 2419
CKSGF+HLKL +ESK LTAF VP GFYEWNVLPFGYKNAPGR+Q FMD+ +NQL+NC+VY
Sbjct: 300 CKSGFYHLKLEDESKKLTAFTVPQGFYEWNVLPFGYKNAPGRYQHFMDNYFNQLENCIVY 359
Query: 2418 IDDILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQP 2239
IDDILL++RT +EH++++E F +I + GISLS+ K EI KNQIEFLG +ID +G+KMQ
Sbjct: 360 IDDILLYSRTQDEHIKLLEKFAHIIENSGISLSKTKAEIMKNQIEFLGIQIDKNGIKMQT 419
Query: 2238 HIAEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDK 2059
HI +KII + I+T+K+LQSFLG +NQ+RE+IPKL+ LKPL +KLKKDV++S+ ++DK
Sbjct: 420 HIVQKIINLDENIDTKKKLQSFLGIVNQVREYIPKLAENLKPLQKKLKKDVEYSFDEKDK 479
Query: 2058 NIINNLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKEEHLCRYNSG 1879
I +K +CK+LPKLY+PD K+FT+I+ETD+S S+GGVLK+RYNKEK EH CRY SG
Sbjct: 480 EQIKKIKILCKKLPKLYFPDENKKFTYIVETDSSNYSYGGVLKYRYNKEKIEHHCRYYSG 539
Query: 1878 TFKDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDNSTVKAWITQKLQNTIIRKE 1699
++ + + W+INRKEL A+ L+ FE YIV+ +FI+R DN+ VK WIT+K+Q+++ KE
Sbjct: 540 SYTEPQEKWEINRKELFALYKCLLAFEPYIVYTRFIVRTDNTQVKWWITRKVQDSVTTKE 599
Query: 1698 INKLLTDINAYNFDVELIKSEENVYADKLSRE 1603
I +L+ +I + F +E+I + +NV AD LSR+
Sbjct: 600 IRRLVLNILNFTFTIEIINTNKNVVADYLSRQ 631
>ref|YP_004300274.1| replicase [Sweet potato vein clearing virus]
gi|325698381|gb|ADZ45064.1| replicase [Sweet potato vein
clearing virus]
Length = 619
Score = 704 bits (1816), Expect = 0.0
Identities = 348/629 (55%), Positives = 462/629 (73%), Gaps = 2/629 (0%)
Frame = -1
Query: 3483 MASHILFKVIYPGFLNRYYSGLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNR 3310
M HIL KVI G+ +RYY+ ++DTGA+ +I NCLP+ WK+ + + GFN EG+
Sbjct: 1 MKIHILVKVICEGYKSRYYTPMIDTGAEISICKMNCLPDEYWKETRNDLIVRGFNNEGSV 60
Query: 3309 IEKYNEDIRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNS 3130
I++ +I I+IW++ +KI +Y ++++ KDIILG +F++MYLP I K + T +P
Sbjct: 61 IDRKASNISIQIWDKIVKIDHIYQFEIQGKDIILGMNFIRMYLPHKISKDFWYLT-TPCG 119
Query: 3129 ETIKAPRIRNQKRIKQPWIKGSSKVNQKVEYKYVNNIEKCIFTVTQKEIIELKLKECYSE 2950
+ I A + N++R K W KG +NQK+ Y ++ ++K +SE
Sbjct: 120 KMIGAKIVENKERFKCEWEKGDKTLNQKLRNVY------------DFSLVRNQIKTLFSE 167
Query: 2949 NPLENWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSKHC 2770
NPLE W+KH+TEVKIELI DS+++QKP +DIEEFK+HIDEL K G IR SNSKH
Sbjct: 168 NPLEFWDKHRTEVKIELINPDSIVYQKPLRWNFEDIEEFKLHIDELLKGGFIRPSNSKHS 227
Query: 2769 SSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDCKS 2590
S AFIV KHSEQKR KSRMVIDYRNLNAKTKTYNYPLPNKIL ++++QGY WFSKFDCKS
Sbjct: 228 SPAFIVNKHSEQKRGKSRMVIDYRNLNAKTKTYNYPLPNKILRVRQVQGYNWFSKFDCKS 287
Query: 2589 GFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLDNCVVYIDD 2410
GF+HLKLTEESK L+AF VP GFYE+NVL FGYKNAPGR+Q +MDS +++L+NC+VYIDD
Sbjct: 288 GFYHLKLTEESKHLSAFNVPQGFYEFNVLMFGYKNAPGRYQCYMDSYFSKLENCIVYIDD 347
Query: 2409 ILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQPHIA 2230
ILL+++T +EH +++ F +I KE G+SLSEKK I NQIEFLG EID SGVKMQ HI
Sbjct: 348 ILLYSKTKDEHETLLKKFYHIVKEAGVSLSEKKAIIGVNQIEFLGIEIDKSGVKMQNHIV 407
Query: 2229 EKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDKNII 2050
KI+ + ++T+K+LQSFLG INQ+RE++P ++ L L +KLKKDV++ + +D+ +
Sbjct: 408 TKIVQCEEVLDTKKKLQSFLGLINQVREYVPNIAKELLFLQKKLKKDVEYHFDSQDQEKL 467
Query: 2049 NNLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKEEHLCRYNSGTFK 1870
+K+ C LPKL +PD K+F WI+ETDAS+ S+GGVLK++Y+++K E+ CRY SGTFK
Sbjct: 468 KKIKEKCSNLPKLLFPDETKQFDWIVETDASEISYGGVLKYKYHQDKIEYHCRYYSGTFK 527
Query: 1869 DNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDNSTVKAWITQKLQNTIIRKEINK 1690
DNE NW+INRKEL +V L FE YIV+ KFILR DN+ VK W+T KL N++ KEI +
Sbjct: 528 DNEKNWEINRKELLSVFKCLYAFEPYIVYNKFILRTDNTQVKYWLTGKLDNSVTTKEIRR 587
Query: 1689 LLTDINAYNFDVELIKSEENVYADKLSRE 1603
L+ IN YNFDV +IKS++N +AD LSRE
Sbjct: 588 LVVKINCYNFDVVVIKSKDNCFADYLSRE 616
>emb|CAC88785.1| putative polyprotein [Nicotiana tabacum]
Length = 517
Score = 588 bits (1517), Expect = e-165
Identities = 285/510 (55%), Positives = 386/510 (75%), Gaps = 4/510 (0%)
Frame = -1
Query: 3474 HILFKVIYPGFLNRYYSGLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEK 3301
+IL K+I G+ NRYY+ +VDTGA+A + NCLPE W+KL+ PI + GFN EG+ I
Sbjct: 5 YILSKIIVEGYYNRYYTPMVDTGAEANMCRHNCLPESKWEKLKNPIVVTGFNNEGSMITY 64
Query: 3300 YNEDIRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSETI 3121
+I+I+IW++ L I +Y Y+ +KDI+LG FL P II K + FT +P + +
Sbjct: 65 KARNIKIQIWDKILTIEEIYSYEFTNKDILLGMPFLDKLYPHIITKTHWWFT-TPCKQKL 123
Query: 3120 KAPRIRNQKRIKQPWIKGSSKVNQKVE--YKYVNNIEKCIFTVTQKEIIELKLKECYSEN 2947
A R+ N+ R PWIKGS K+ QK+E + +NIE IF++ + + ++ KL+ Y++N
Sbjct: 124 GAKRVNNKVRKTTPWIKGSEKITQKLENIIQSNHNIEIIIFSINKIKPLQDKLELLYNDN 183
Query: 2946 PLENWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSKHCS 2767
PL+ W KH+T++KIELI+ +S+I QKP D+ EFKMHI EL I+ SNSKH S
Sbjct: 184 PLQGWEKHQTKIKIELIDENSIITQKPLKYNFNDLTEFKMHIKELLDNNYIQESNSKHTS 243
Query: 2766 SAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDCKSG 2587
AFIV KHSEQKR KSRMVIDYRNLNAKTKTYNYP+PNKIL I++IQGY +FSKFD KSG
Sbjct: 244 PAFIVNKHSEQKRGKSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGYNYFSKFDYKSG 303
Query: 2586 FHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLDNCVVYIDDI 2407
F+HLKL +ESK LTAF VP GFYEWNVLPFGYKNAPGR+Q FMD+ +NQL+NC++YIDDI
Sbjct: 304 FYHLKLEDESKKLTAFTVPQGFYEWNVLPFGYKNAPGRYQHFMDNYFNQLENCIIYIDDI 363
Query: 2406 LLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQPHIAE 2227
LL++RT EH++++E FI+I + GISLS+KK E+ KNQIEFLG ++D +G+KMQ H+ +
Sbjct: 364 LLYSRTENEHIKLLEKFIHIVEISGISLSKKKAEVMKNQIEFLGIQMDKNGIKMQTHVVQ 423
Query: 2226 KIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDKNIIN 2047
KII + ++T+K+LQSFLG +NQ+RE+IPKL+ LKPL +KLKKD+++ + ++DK I
Sbjct: 424 KIINLNETLDTKKKLQSFLGLVNQVREYIPKLAENLKPLQKKLKKDIEYHFDEKDKIHIQ 483
Query: 2046 NLKQVCKELPKLYYPDVQKEFTWILETDAS 1957
+K +CK+LPKLY+PD +K+FT+I+ETD+S
Sbjct: 484 KIKNMCKKLPKLYFPDEKKQFTYIVETDSS 513
>emb|CAC88781.1| putative polyprotein [Nicotiana tabacum]
Length = 475
Score = 544 bits (1402), Expect = e-151
Identities = 264/469 (56%), Positives = 353/469 (75%), Gaps = 4/469 (0%)
Frame = -1
Query: 3474 HILFKVIYPGFLNRYYSGLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEK 3301
+IL K+I G+ NRYY+ +VDTGA+ + NCLPE W+KL+ PI + GFN EG+ I
Sbjct: 5 YILSKIIVEGYYNRYYTPMVDTGAETNMCRHNCLPESKWEKLKTPIVVTGFNNEGSMITY 64
Query: 3300 YNEDIRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSETI 3121
+I+I+IW++ L I +Y Y+ +KDI+LG FL P II K + FT +P + +
Sbjct: 65 KARNIKIQIWDKILTIEEIYSYEFTNKDILLGMPFLDKLYPHIITKTHWWFT-TPCKQKL 123
Query: 3120 KAPRIRNQKRIKQPWIKGSSKVNQKVE--YKYVNNIEKCIFTVTQKEIIELKLKECYSEN 2947
A R+ N+ R PWIKGS K+ QK+E + +NIE IF++ + + ++ KL+ Y++N
Sbjct: 124 GAKRVNNKVRKTTPWIKGSEKITQKLENIIQSNHNIEIIIFSINKIKPLQDKLELLYNDN 183
Query: 2946 PLENWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSKHCS 2767
PL+ W KH+T++KIELI+ +++I QKP D+ EFKMHI EL I+ SNSKH S
Sbjct: 184 PLQGWEKHQTKIKIELIDENNIITQKPLKYNFNDLTEFKMHIKELLDNNYIQESNSKHTS 243
Query: 2766 SAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDCKSG 2587
AFIV KHSEQKR KSRMVIDYRNLNAKTKTYNYP+PNKIL I++IQGY +FSKFDCKSG
Sbjct: 244 PAFIVNKHSEQKRGKSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGYNYFSKFDCKSG 303
Query: 2586 FHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLDNCVVYIDDI 2407
F+HLKL +ESK LTAF VP GFYEWNVLPFGYKNAPGR+Q FMD+ +NQL+NC++YIDDI
Sbjct: 304 FYHLKLEDESKKLTAFTVPQGFYEWNVLPFGYKNAPGRYQHFMDNYFNQLENCIIYIDDI 363
Query: 2406 LLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQPHIAE 2227
LL++RT EH++++E FI+I + GISLS+KK E+ KNQIEFLG +ID +G+KMQ H+ +
Sbjct: 364 LLYSRTENEHIKLLEKFIHIVEISGISLSKKKAEVMKNQIEFLGIQIDKNGIKMQTHVVQ 423
Query: 2226 KIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQW 2080
KII + ++T+K+LQSFLG +NQ+RE+IPKL+ LKPL +KLKKD+++
Sbjct: 424 KIINLNETLDTKKKLQSFLGLVNQVREYIPKLAENLKPLQKKLKKDIEY 472
>ref|XP_004247251.1| PREDICTED: putative enzymatic polyprotein-like [Solanum lycopersicum]
Length = 428
Score = 525 bits (1351), Expect = e-145
Identities = 244/394 (61%), Positives = 322/394 (81%)
Frame = -1
Query: 2778 KHCSSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFD 2599
KH S AFIV+KHSEQKR KSRMVIDYRNLNAKTKTYNYP+PNKIL I++IQGY +FSKFD
Sbjct: 33 KHTSPAFIVIKHSEQKRGKSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGYNYFSKFD 92
Query: 2598 CKSGFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLDNCVVY 2419
CKSGF+H+KL EESK LTAF VP GFYEWNVLPFGYKNAPGR+Q FMD+ +NQL+NC++Y
Sbjct: 93 CKSGFYHIKLEEESKQLTAFTVPQGFYEWNVLPFGYKNAPGRYQHFMDNYFNQLENCIIY 152
Query: 2418 IDDILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQP 2239
IDDILL+++T +EH++++E FI+I K+ GISLS+ K EI K QIEFLG +ID +G+KMQ
Sbjct: 153 IDDILLYSKTQDEHIKLLEKFIHIIKQSGISLSKSKAEIMKPQIEFLGIQIDKNGIKMQT 212
Query: 2238 HIAEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDK 2059
HI +KII + I+T+K+LQSFLG +NQ+RE+IPKL+ LKPL +KLKKD+++ + +DK
Sbjct: 213 HIVQKIITIDENIDTKKKLQSFLGLVNQVREYIPKLAEHLKPLYKKLKKDIEYHFDNKDK 272
Query: 2058 NIINNLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKEEHLCRYNSG 1879
I N+K++CK+LPKLY+PD + FT+I+ETD+S S+GGVLK++Y+KEK EH CRY SG
Sbjct: 273 EHIKNIKKLCKKLPKLYFPDENRTFTYIIETDSSDHSYGGVLKYKYDKEKVEHHCRYCSG 332
Query: 1878 TFKDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDNSTVKAWITQKLQNTIIRKE 1699
++ + + W+INRKEL A+ L+ FE YIV+ KFI+R DN+ VK WIT+KL +++ KE
Sbjct: 333 SYTEAQAKWEINRKELFALYKCLLTFEPYIVYNKFIVRTDNTQVKWWITKKLDDSVTTKE 392
Query: 1698 INKLLTDINAYNFDVELIKSEENVYADKLSREPN 1597
I +L+ +I + F +E+IK+ EN+ AD LSR+ N
Sbjct: 393 IRRLVLNILNFTFTIEIIKTNENLVADYLSRKRN 426
>ref|YP_004347415.1| replicase [Sweet potato caulimo-like virus]
gi|327415369|gb|ADR03142.2| replicase [Sweet potato
caulimo-like virus]
Length = 641
Score = 509 bits (1310), Expect = e-141
Identities = 282/641 (43%), Positives = 401/641 (62%), Gaps = 17/641 (2%)
Frame = -1
Query: 3477 SHILFKVIYPGFLNRYYSGLVDTGAQATIFSENCLP--EWKKLEKPINMMGFNGEGNRIE 3304
+++ K+ P +++R Y GL DTGA + LP +W +++ + + GF+ E N I+
Sbjct: 5 TYMTVKITIPTYMSRIYHGLFDTGANTCVCKTKVLPPEKWIEIDNKV-LTGFSEEKNVIK 63
Query: 3303 KYNEDIRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIG--KRYIEFT----L 3142
++I+I I ++E I +Y D + DII+G F Y PI I K I+FT +
Sbjct: 64 YRADNIKIMIAKKEFIIPYIYAMDNINADIIIGATFYNKYSPITIDMEKGIIKFTNKGEV 123
Query: 3141 SPNSETIKAPRIRNQKRIKQPWIKGSSKVNQKVEYKYVNNIEKCIFTVTQKEIIELKLKE 2962
PN +K PR K++ PW KG+ + Q ++ + +NNI + +E+ + ++
Sbjct: 124 YPNY-LVKYPR----KKVLIPWEKGNPSIIQPLQNEQINNINEV------EELNNILGED 172
Query: 2961 CYSENPLENWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRT-- 2788
Y +NPL++W KHKT KIEL D I++ P N E D +EFKMHIDE+ K G I
Sbjct: 173 IYGDNPLKHWEKHKTYAKIELKNPDDHIYKPPINYQESDYKEFKMHIDEMVKEGFIEECK 232
Query: 2787 --SNSKHCSSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEW 2614
N K+ S AFIV KHSE KR KSRMVIDY++LN K K +P+PNK ++I + +
Sbjct: 233 NLENKKYSSPAFIVNKHSEIKRGKSRMVIDYKDLNKKAKVIKHPIPNKDILINRGIKANY 292
Query: 2613 FSKFDCKSGFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYN-QL 2437
FSKFDCKSGF+H+KL E+SK TAF VP G+Y W VLPFGY N+P +Q FMD +
Sbjct: 293 FSKFDCKSGFYHIKLEEDSKKYTAFTVPQGYYVWIVLPFGYHNSPSIYQQFMDGIFRPYY 352
Query: 2436 DNCVVYIDDILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDIS 2257
D +VYIDDIL+F++TYEEH +E F NI + GI LS+KK EI K +IEFLG +I+
Sbjct: 353 DFILVYIDDILIFSKTYEEHKIHLEIFRNIIIKHGIVLSKKKAEIGKQKIEFLGVKIEQG 412
Query: 2256 GVKMQPHIAEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKL--KKDVQ 2083
G+++QPHI +KI+ +I ++KELQS LG +NQ+R F+P LS L P+ +KL K +
Sbjct: 413 GIELQPHIIDKILEKHIKIKSKKELQSILGLVNQIRNFLPNLSKILLPIQKKLKIKNEEV 472
Query: 2082 WSWTKEDKNIINNLKQVCKE-LPKLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKE 1906
W WTKED+ I LK CK+ + K+ YP +K+ WI+E DASK+ +G LK Y K+K
Sbjct: 473 WEWTKEDEQNIIKLKDYCKDNVIKMTYPVEEKDMNWIIEVDASKEYYGNCLK--YKKDKI 530
Query: 1905 EHLCRYNSGTFKDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDNSTVKAWI-TQ 1729
E++CRYNSGTFK++E N+DINRKEL A+ L + ++ K ++R DNS WI
Sbjct: 531 EYICRYNSGTFKEHEKNYDINRKELIAIYKGLEHYAIFTTQGKKLVRTDNSQAYYWIKNS 590
Query: 1728 KLQNTIIRKEINKLLTDINAYNFDVELIKSEENVYADKLSR 1606
K++N+I K + +L I Y+FD+E+I + N+ AD LSR
Sbjct: 591 KIKNSIDMKNVKGILAKIIMYDFDIEIIDGKTNIVADFLSR 631
>ref|NP_056848.1| aspartic protease/reverse transcriptase [Cassava vein mosaic virus]
gi|81945490|sp|Q89703.1|POL_CSVMV RecName: Full=Putative
enzymatic polyprotein; Includes: RecName: Full=Protease;
Short=PR; Includes: RecName: Full=Reverse transcriptase;
Short=RT; Includes: RecName: Full=Ribonuclease H
gi|665934|gb|AAA79873.1| ORF III [Cassava vein mosaic
virus] gi|1399884|gb|AAB03327.1| ORF 3 [Cassava vein
mosaic virus]
Length = 652
Score = 491 bits (1263), Expect = e-135
Identities = 280/641 (43%), Positives = 386/641 (60%), Gaps = 17/641 (2%)
Frame = -1
Query: 3477 SHILFKVIYPGFLNRYYSGLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIE 3304
+++ K+ P +++R Y GL DTGA I + LP+ W K E + + GFN E + E
Sbjct: 5 TYMTIKISIPKYMSRIYHGLFDTGANICICKKKVLPDELWHKTENLV-LRGFNDEKHVAE 63
Query: 3303 KYNEDIRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPII--IGKRYIEFTLS--- 3139
++I I I +E+ I +Y D S DII+G F Y PI IGK I+FT +
Sbjct: 64 YRADNITIMIAKEKFIIPYIYAMDEMSPDIIIGATFYNKYSPIELDIGKGIIKFTKNNEK 123
Query: 3138 -PNSETIKAPRIRNQKRIKQPWIKGSSKVNQKVEYKYVNNIEKCIFTVTQKEIIELKLKE 2962
PN +K P+ KR PW KG+ V + +E +N IE ++EI ++ +
Sbjct: 124 YPNY-LVKYPK----KRKLVPWTKGNPSVTETMENIGINQIESR--NPIEEEINQILGTD 176
Query: 2961 CYSENPLENWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSN 2782
Y ENPLE W KHKT KIEL I++ P E D+ EFKMHI+E+ K G I
Sbjct: 177 IYGENPLEKWEKHKTLAKIELKNETDNIYKPPMLYQETDLPEFKMHIEEMIKEGFIEEKT 236
Query: 2781 S----KHCSSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEW 2614
+ K+ S AFIV KHSEQKR K+RMVIDY++LN K K YP+PNK +I + +
Sbjct: 237 NFEDKKYSSPAFIVNKHSEQKRGKTRMVIDYKDLNKKAKVVKYPIPNKDTLIHRSIQARY 296
Query: 2613 FSKFDCKSGFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYN-QL 2437
+SKFDCKSGF+H+KL E+SK TAF VP G+Y+W VLPFGY N+P FQ FMD +
Sbjct: 297 YSKFDCKSGFYHIKLEEDSKKYTAFTVPQGYYQWKVLPFGYHNSPSIFQQFMDRIFRPYY 356
Query: 2436 DNCVVYIDDILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDIS 2257
D +VYIDDIL+F++T EEH I F +IT G+ +S+KKTE+ K +I+FLG +I+
Sbjct: 357 DFIIVYIDDILVFSKTIEEHKIHIAKFRDITLANGLIISKKKTELCKEKIDFLGVQIEQG 416
Query: 2256 GVKMQPHIAEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLK-KDVQ- 2083
G+++QPHI KI+ +I + ELQS LG +NQ+R FIP L+ L P+ +KLK KD +
Sbjct: 417 GIELQPHIINKILEKHTKIKNKTELQSILGLLNQIRHFIPHLAQILLPIQKKLKIKDEEI 476
Query: 2082 WSWTKEDKNIINNLKQVCKELP-KLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKE 1906
W+WTKED+ I ++ K L K+ YP +++ WI+E DAS +++G LK++ K
Sbjct: 477 WTWTKEDEEKIKLIQDYSKNLVIKMKYPINKEDMNWIIEVDASNNAYGSCLKYKPKNSKI 536
Query: 1905 EHLCRYNSGTFKDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDNSTVKAWITQK 1726
E+LCRYNSGTFK+NE +DINRKEL AV L + ++ ++R DNS V WI
Sbjct: 537 EYLCRYNSGTFKENEQKYDINRKELIAVYQGLQSYSLFTCEGNKLVRTDNSQVYYWIKND 596
Query: 1725 LQNTIIR-KEINKLLTDINAYNFDVELIKSEENVYADKLSR 1606
I + I LL I YNF+++LI + N+ AD LSR
Sbjct: 597 TNKKSIEFRNIKYLLAKIAVYNFEIQLIDGKTNIIADYLSR 637
>ref|NP_043933.1| hypothetical protein [Strawberry vein banding virus]
gi|1360613|emb|CAA65970.1| ORF V [Strawberry vein banding
virus]
Length = 708
Score = 375 bits (962), Expect = e-100
Identities = 235/692 (33%), Positives = 363/692 (52%), Gaps = 25/692 (3%)
Frame = -1
Query: 3603 KEDELKENLSEKRDSERRIKRLEARIERFSYLKDGLTIC*MASHILFKVIYPGFLNRYYS 3424
+++E +E L E DSE R L Y++ + FK L+ Y
Sbjct: 29 QQNEDEEQLLESVDSEERFSTLTKTNPNSIYIR---------GNFYFKGYKKYSLDLY-- 77
Query: 3423 GLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEKYNEDIRIRIWEEELKIS 3250
VDTGA +++ +PE W + PI N K E ++++I +E I
Sbjct: 78 --VDTGASMCTANKHVIPEEFWVNAKNPIRARIANDSIMTFNKVAELMQVQIADETFIIP 135
Query: 3249 TVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSETIKA---------PRIRNQ 3097
T+Y + DI LG +F ++Y P + K I F + + K P
Sbjct: 136 TLYQATTKG-DITLGNNFCRLYEPFVQYKDMITFHKDGRAVSTKKVTKAYFHGLPGFLES 194
Query: 3096 KRIKQ-----------PWIKGSSKVNQKVEYKYVNNIEKCIFTVTQKEIIELKLKECYSE 2950
K++ P +++ + + + E+ T++ +E L SE
Sbjct: 195 KKVGSSTSTPNPENITPVTINQDNISKIFKGEEIGESEQLFSTISAYTEVEKLLDSICSE 254
Query: 2949 NPLENW-NKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSKH 2773
+PL++ NK K E +I L++ + +I KP + +D EEFK I+EL K G+IR S S H
Sbjct: 255 HPLDSRINKGKFEAQIALLDTNKIIKCKPMQYSPQDREEFKTQIEELLKLGIIRPSKSPH 314
Query: 2772 CSSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDCK 2593
S AF+V H+E KR K+RMVI+Y+ LN TK Y LPNK ++++I G ++S FDCK
Sbjct: 315 SSPAFMVRNHAEIKRGKARMVINYKKLNDHTKGDGYLLPNKEQLLQRIGGKTFYSSFDCK 374
Query: 2592 SGFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQL--DNCVVY 2419
SGF ++L E+ LTAF P G YEW V+PFG K AP FQ MD + + C VY
Sbjct: 375 SGFWQVRLAPETIQLTAFSCPQGHYEWLVMPFGLKQAPAIFQRHMDESLSNMYPQFCAVY 434
Query: 2418 IDDILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQP 2239
+DDI++F++T EEH+ ++ +N K GI LS+KK ++ K I FLG I+ +K+Q
Sbjct: 435 VDDIIVFSKTEEEHLGHVKIVLNRCKALGIVLSKKKAQLCKTTINFLGLVIERGNLKVQS 494
Query: 2238 HIAEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDK 2059
HI ++A D+++ R LQ FLG +N + + PK++ PL KLKK++ WSWT++D
Sbjct: 495 HIGLHLVAFPDQLSDRNALQRFLGLLNYISAYFPKIANLRSPLQVKLKKEITWSWTEKDT 554
Query: 2058 NIINNLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKEEHLCRYNSG 1879
+ +K + K LP LY P E I+E DAS D +G +LK + E +E +CRY SG
Sbjct: 555 ETVRKIKSLVKTLPDLYNP--SPEDKPIIECDASDDHWGAILKAKL-PEGKEVICRYASG 611
Query: 1878 TFKDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDNSTVKAWITQKLQNTIIRKE 1699
TFK E N+ N KE+ ++ A+ F YI+ KF++R DN+ ++ + +
Sbjct: 612 TFKPAEKNYHSNEKEILSIIKAIKAFRAYILPYKFLVRTDNTNAAYFVRTNIAGDYKQSR 671
Query: 1698 INKLLTDINAYNFDVELIKSEENVYADKLSRE 1603
+ + + Y+FD+E + ++NV AD ++RE
Sbjct: 672 LVRWQMALREYSFDIEHVSGQKNVLADIMTRE 703
>emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]
Length = 699
Score = 367 bits (943), Expect = 2e-98
Identities = 223/630 (35%), Positives = 334/630 (53%), Gaps = 25/630 (3%)
Frame = -1
Query: 3417 VDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEKYNEDIRIRIWEEELKISTV 3244
VDTGA +++ +PE W + PI N K E ++++I +E I T+
Sbjct: 71 VDTGASMCTANKHVIPEEFWVNAKNPIKARIANDSIITFNKVAELVQVQIADETFIIPTM 130
Query: 3243 YCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSETIKAPRIRNQKRIKQPWIKGS 3064
Y + DI +G +F ++Y P + K I F N + I ++ P S
Sbjct: 131 YQATTKG-DITIGNNFCRLYEPFVQYKDMITF--HKNGKAISTKKVTKAYFHGLPGFLES 187
Query: 3063 SKVNQKVEYKYVNNI--------------------EKCIFTVTQKEIIELKLKECYSENP 2944
K+ + NI E ++ +E L SE+P
Sbjct: 188 KKIGSNIPTPNPENITPVTIHQDNISTIFKGEEIGETLFSVISAFTEVEKLLDSICSEHP 247
Query: 2943 L-ENWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSKHCS 2767
L E NK K E +I L++ + +I KP + +D EEFK I+EL K G+IR S S H S
Sbjct: 248 LDERINKGKFEAQITLLDPNKVIKCKPMQYSPQDREEFKTQIEELLKLGIIRPSKSPHSS 307
Query: 2766 SAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDCKSG 2587
AF+V H+E KR K+RMVI+Y+ LN TK Y LPNK ++++I G ++S FDCKSG
Sbjct: 308 PAFMVRNHAEIKRGKARMVINYKKLNDNTKGDGYLLPNKEQLLQRIGGKTYYSSFDCKSG 367
Query: 2586 FHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQL--DNCVVYID 2413
F ++L E+ LTAF P G YEW V+PFG K AP FQ MD + + C VY+D
Sbjct: 368 FWQVRLAPETIQLTAFSCPQGHYEWLVMPFGLKQAPAIFQRHMDESLSNMYPSFCAVYVD 427
Query: 2412 DILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQPHI 2233
DI++F++T +EH+ ++ +N K GI LS+KK ++ K I FLG I+ +K+Q HI
Sbjct: 428 DIIVFSKTEDEHLGHVKIVLNRCKALGIVLSKKKAQLCKTTINFLGLVIERGNLKVQSHI 487
Query: 2232 AEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDKNI 2053
+ A D++ R LQ FLG +N + + PK++ PL KLKK++ WSWT++D
Sbjct: 488 GLHLTAFPDQLADRNALQRFLGLLNYISAYFPKIANLRSPLQVKLKKEITWSWTEKDTET 547
Query: 2052 INNLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKEEHLCRYNSGTF 1873
+ +K + K LP LY P E I+E DAS D +G VLK + E +E +CRY SGTF
Sbjct: 548 VRKIKSLVKSLPDLYNP--SPEDKPIIECDASDDHWGAVLKAKL-PEGKEVICRYASGTF 604
Query: 1872 KDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDNSTVKAWITQKLQNTIIRKEIN 1693
K E N+ N KE+ ++ A+ F YI+ KF++R DN+ ++ + + +
Sbjct: 605 KPAEKNYHSNEKEILSIIKAIKAFRAYILPYKFLVRTDNTNAAYFVRTNIAGDYKQSRLV 664
Query: 1692 KLLTDINAYNFDVELIKSEENVYADKLSRE 1603
+ + Y+FD+E + ++NV AD ++RE
Sbjct: 665 RWQMALREYSFDIEHVSGQKNVLADIMTRE 694
>gb|AEA39176.1| polyprotein [Dahlia mosaic virus]
Length = 808
Score = 362 bits (930), Expect = 7e-97
Identities = 245/721 (33%), Positives = 375/721 (52%), Gaps = 11/721 (1%)
Frame = -1
Query: 3732 QDREETMELIKQNKTEISNLYDKLNMTQQTREEDILMYRLIRNKEDELKENLSEKRDSER 3553
Q+ + ++LI + + L D N Q + + E KE EK+D+
Sbjct: 98 QESSKKVKLISEEREGYYPLEDSFNDYMQVYSLEEQELLTDSDASSEKKEKEREKKDNND 157
Query: 3552 RIKRLEARIERFSYLKDGLTIC*MASHILFKVIYPGFLNRYYSGLVDTGAQATIFSENCL 3373
+I + + +S + + +I +I K+ G+ VDTGA + S + +
Sbjct: 158 QIHYCQNELV-YSNITNPNSI-----YIKGKIFLKGYKTITLHCYVDTGASLCLASRHVI 211
Query: 3372 PE--WKKLEKPINMMGFNGEGNRIEKYNEDIRIRIWEEELKISTVYCYDLESKDIILGFD 3199
PE W+ K I + N E +++K ++ + E I T+Y + D++LG +
Sbjct: 212 PEELWENTPKDIKVTIANQETIKLDKVCRNLIVYFSGEPFPIPTIYQQE-SGIDLLLGNN 270
Query: 3198 FLKMYLPIIIGKRYIEFTLSPNSETIKAPRIRNQKRIKQPWIKGSSKVNQKVEYKYVNNI 3019
F ++Y P I F L N E I +I +I + S K + K + NI
Sbjct: 271 FCQLYGPFTQWIDRISFHL--NQEMILIKKITKAFQIGKTGFLESMKKDSKTKQTPGTNI 328
Query: 3018 -------EKCIFTVTQKEIIELKLKECYSENPLE-NWNKHKTEVKIELIERDSLIHQKPF 2863
E+ + + + IE L++ SENP++ +K+ IELI+ +++ KP
Sbjct: 329 TQEVIKPERFFLEIQKYQKIEELLEKVCSENPIDPEKSKYWMNASIELIDPKTVVRVKPM 388
Query: 2862 NNTEKDIEEFKMHIDELSKTGMIRTSNSKHCSSAFIVMKHSEQKRNKSRMVIDYRNLNAK 2683
+ +D EEF I EL +I S S H S AF+V +E++R K RMV++Y+ +NA
Sbjct: 389 KYSPQDREEFGKQIKELLDLKLIIPSKSPHMSPAFLVGNEAERRRGKKRMVVNYKAINAA 448
Query: 2682 TKTYNYPLPNKILMIKKIQGYEWFSKFDCKSGFHHLKLTEESKALTAFIVPNGFYEWNVL 2503
TK ++ LP ++ ++G FS FDCKSGF + L EES+ LTAF P+G Y+W V+
Sbjct: 449 TKGDSHNLPCIQELLTLLRGKTIFSTFDCKSGFWQVLLNEESQLLTAFTCPDGHYQWKVV 508
Query: 2502 PFGYKNAPGRFQSFMDSCYNQLDN-CVVYIDDILLFTRTYEEHVRIIENFINITKEKGIS 2326
PFG K APG FQ M + L+N C VY+DDI++F+ + E+H + + ++ GI
Sbjct: 509 PFGLKQAPGIFQRHMQNALRGLENYCTVYVDDIIVFSDSEEKHYFHDLSVLKTIEKYGII 568
Query: 2325 LSEKKTEIFKNQIEFLGHEIDISGVKMQPHIAEKIIANTDEINTRKELQSFLGTINQLRE 2146
LS+KK +FK +I FLG EID Q HI E + D + +K LQ FLG +
Sbjct: 569 LSKKKANLFKAKINFLGLEIDQGTHCPQKHILENLHKFPDTLEDKKHLQRFLGVLTYAES 628
Query: 2145 FIPKLSTTLKPLNRKLKKDVQWSWTKEDKNIINNLKQVCKELPKLYYPDVQKEFTWILET 1966
+IPKL+ KPL KLKKD W W + D N I +K+ PKLY P +KEF I+ET
Sbjct: 629 YIPKLAELRKPLQVKLKKDYVWEWKQSDTNYIKKIKKNLISFPKLYLPK-EKEFL-IIET 686
Query: 1965 DASKDSFGGVLKFRYNKEKEEHLCRYNSGTFKDNELNWDINRKELAAVKIALVKFEVYIV 1786
DAS D +GGVLK + +KEE +CRY SG+FK E N+ N KEL AVK + KF +Y+
Sbjct: 687 DASNDFWGGVLKAK-TADKEE-VCRYTSGSFKTAEKNYHSNEKELLAVKNTISKFSIYLT 744
Query: 1785 FQKFILRVDNSTVKAWITQKLQNTIIRKEINKLLTDINAYNFDVELIKSEENVYADKLSR 1606
KF++R DN ++ K+ + + + + Y+FD+E ++ +NV AD L+R
Sbjct: 745 PVKFLVRTDNKNFTYFLKTKISGDNKQGRLVRWQMWFSRYSFDIEHLEGPKNVLADCLTR 804
Query: 1605 E 1603
+
Sbjct: 805 D 805
>gb|AGQ49469.1| reverse transcriptase [Dahlia mosaic virus]
Length = 814
Score = 362 bits (929), Expect = 9e-97
Identities = 242/726 (33%), Positives = 382/726 (52%), Gaps = 16/726 (2%)
Frame = -1
Query: 3732 QDREETMELIKQNKTE----ISNLY-DKLNMTQQTREEDILMYRLIRNKEDELKENLSEK 3568
Q+ + ++LI + +TE N++ D + + E + + K NL +K
Sbjct: 99 QESPKKVKLISEAETEGYYPTENIFNDYMQVYSLEEHESLTDSDNSSDSSSSQKFNLGKK 158
Query: 3567 RDSERRIKRLEARIERFSYLKDGLTIC*MASHILFKVIYPGFLNRYYSGLVDTGAQATIF 3388
+D++ ++ + + +S + + +I +I K+ G+ VDTGA +
Sbjct: 159 KDNDEQVHCCQNELV-YSNITNPNSI-----YIKGKIFLKGYKTITLHCYVDTGASLCLA 212
Query: 3387 SENCLPE--WKKLEKPINMMGFNGEGNRIEKYNEDIRIRIWEEELKISTVYCYDLESKDI 3214
S++ +PE W+ K I + N E +++K ++ + E I T+Y + D+
Sbjct: 213 SKHVIPEDLWENTPKDIKVTIANQETIKLDKVCRNLIVYFSGEPFPIPTIYQQE-SGIDL 271
Query: 3213 ILGFDFLKMYLPIIIGKRYIEFTLSPNSETIKAPRIRNQKRIKQPWIKGSSKVNQKVEYK 3034
+LG +F ++Y P I F L N E I +I +I + S K + K +
Sbjct: 272 LLGNNFCQLYGPFTQWIDRISFHL--NQEMILIKKITKAFQIGKTGFLESMKKDSKTKQT 329
Query: 3033 YVNNI-------EKCIFTVTQKEIIELKLKECYSENPLE-NWNKHKTEVKIELIERDSLI 2878
NI E+ + + + IE L++ SENP++ +K+ IELI+ +++
Sbjct: 330 PGTNITQEVIKPERFFLEIQKYQKIEDLLEKVCSENPIDPEKSKYWMNASIELIDPKTVV 389
Query: 2877 HQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSKHCSSAFIVMKHSEQKRNKSRMVIDYR 2698
KP + +D EEF I EL +I S S H S AF+V +E++R K RMV++Y+
Sbjct: 390 RVKPMKYSPQDREEFGKQIKELLDLKLIIPSKSPHMSPAFLVENEAERRRGKKRMVVNYK 449
Query: 2697 NLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDCKSGFHHLKLTEESKALTAFIVPNGFY 2518
+NA TK ++ LP ++ ++G FS FDCKSGF + L EES+ LTAF P+G Y
Sbjct: 450 AINAATKGDSHNLPCMQELLTLLRGKTIFSTFDCKSGFWQVLLNEESQLLTAFTCPDGHY 509
Query: 2517 EWNVLPFGYKNAPGRFQSFMDSCYNQLDN-CVVYIDDILLFTRTYEEHVRIIENFINITK 2341
+W V+PFG K AP FQ M + L+N C VY+DDI++F+ + E+H + + + +
Sbjct: 510 QWRVVPFGLKQAPSIFQRHMQNALRGLENYCTVYVDDIIVFSDSEEKHYFHVLSVLKTIE 569
Query: 2340 EKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQPHIAEKIIANTDEINTRKELQSFLGTI 2161
+ GI LS+KK +FK +I FLG EID Q HI E + D + +K LQ FLG +
Sbjct: 570 KYGIILSKKKANLFKTKINFLGLEIDQGTHCPQKHILENLHKFPDTLEDKKHLQRFLGVL 629
Query: 2160 NQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDKNIINNLKQVCKELPKLYYPDVQKEFT 1981
+IPKL+ KPL KLKKD W W + D N I +K+ PKLY P ++EF
Sbjct: 630 TYAESYIPKLAELRKPLQVKLKKDYVWEWKQSDTNYIKKIKKNLTSFPKLYLPK-EEEFL 688
Query: 1980 WILETDASKDSFGGVLKFRYNKEKEEHLCRYNSGTFKDNELNWDINRKELAAVKIALVKF 1801
I+ETDAS D +GGVLK + +KEE +CRY SG+FK E N+ N KEL AVK + KF
Sbjct: 689 -IIETDASNDFWGGVLKAK-TADKEE-VCRYTSGSFKTAEKNYHSNEKELLAVKNTISKF 745
Query: 1800 EVYIVFQKFILRVDNSTVKAWITQKLQNTIIRKEINKLLTDINAYNFDVELIKSEENVYA 1621
+Y+ KF++R DN ++ K+ + + + + Y+FD+E ++ +NV A
Sbjct: 746 SIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQGRLVRWQMWFSRYSFDIEHLEGSKNVLA 805
Query: 1620 DKLSRE 1603
D L+R+
Sbjct: 806 DCLTRD 811
>emb|CAH68829.1| polyprotein [Carnation etched ring virus]
Length = 656
Score = 359 bits (922), Expect = 6e-96
Identities = 224/633 (35%), Positives = 344/633 (54%), Gaps = 19/633 (3%)
Frame = -1
Query: 3453 YPGFLNRYYSGLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEKYNEDIRI 3280
+PG+ VDTG+ + S+ +PE W+ EKP+N+ NG+ ++ K + I
Sbjct: 20 FPGYKQLELHCYVDTGSSLCMASKYVIPEEYWQTAEKPLNIKIANGKIIQLTKVCSKLPI 79
Query: 3279 RIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSETIKAPRIRN 3100
R+ E I T++ + D++LG +F ++Y P I I F L+ S I
Sbjct: 80 RLGGERFLIPTLFQQE-SGIDLLLGNNFCQLYSPFIQYTDRIYFHLNKQSVIIGKITKAY 138
Query: 3099 QKRIKQ--PWIKGSSKVNQKVEYKYVNN-----------IEKCIFTV--TQKEIIELKLK 2965
Q +K +K KVN+ +N IE+ + + ++ IE L+
Sbjct: 139 QYGVKGFLESMKKKYKVNRPEPINITSNQHLFLEEGGSNIEELCYEIQISKFSAIEEMLE 198
Query: 2964 ECYSENPLE-NWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRT 2788
SENP++ +K IELI+ +++ KP + + D EEF I E +I+
Sbjct: 199 RVSSENPIDPEKSKQWMTATIELIDPKTIVEVKPMSYSPSDREEFDKQIKEPLDLKVIKP 258
Query: 2787 SNSKHCSSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFS 2608
S S H S AF+V +E++R K RMV++Y+ +N TK + LPNK ++ ++G + +S
Sbjct: 259 SKSPHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLALVRGKKIYS 318
Query: 2607 KFDCKSGFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLDN- 2431
FDCKSGF + L +ES+ LTAF P G Y+WNV+PFG K AP FQ M + +NQ
Sbjct: 319 SFDCKSGFWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIFQRHMQTAFNQHSKY 378
Query: 2430 CVVYIDDILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGV 2251
C VY+DDIL+F+ T EEH + N + ++ GI LS+KK ++FK +I FLG EID
Sbjct: 379 CCVYVDDILVFSNTEEEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTH 438
Query: 2250 KMQPHIAEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWT 2071
Q HI E I D I +K+LQ LG + ++IPKL++ KPL KLK+D W+W
Sbjct: 439 CPQNHILEHIHKFPDRIEDKKQLQRSLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWN 498
Query: 2070 KEDKNIINNLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKEEHLCR 1891
D + +K+ K PKLY+P+ + ++ETDAS++ +GG+LK +N E++CR
Sbjct: 499 DTDSQYMAKIKKNLKSFPKLYHPEPNDKL--VIETDASEEFWGGILKAIHN--SHEYICR 554
Query: 1890 YNSGTFKDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDNSTVKAWITQKLQNTI 1711
Y SG+FK E N+ N KEL AV + KF +Y+ +F++R DN ++ L+
Sbjct: 555 YASGSFKAAERNYHSNEKELLAVFRVIYKFSIYLTPCRFLIRSDNKNFTHFVNINLKGDR 614
Query: 1710 IRKEINKLLTDINAYNFDVELIKSEENVYADKL 1612
+ + + ++ Y+FDVE I +NV+AD L
Sbjct: 615 KQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFL 647
>ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus]
gi|21427196|gb|AAM53128.1| ORFV [Mirabilis mosaic virus]
Length = 674
Score = 358 bits (918), Expect = 2e-95
Identities = 228/639 (35%), Positives = 348/639 (54%), Gaps = 15/639 (2%)
Frame = -1
Query: 3474 HILFKVIYPGFLNRYYSGLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEK 3301
+I KV + G+ VDTGA + S++ +P+ W+ + I + N + K
Sbjct: 30 YIEAKVKFKGYQTLSLHCYVDTGASLCLASKHVIPDDFWENAPRSIPVKIANQSSITLNK 89
Query: 3300 YNEDIRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSET- 3124
++I I E I T+Y + DI+LG +F + Y P I +I F + N+E
Sbjct: 90 VCRGLKINIAGNEFFIPTIYQQET-GIDILLGNNFCQTYQPFIQWVDHIAFHIKENNEEK 148
Query: 3123 -IKAPRIRNQKRIKQPWI-----KGSSKV---NQKVEYKYVNNIEKCIFTVTQKEIIELK 2971
+ P++R R P KGS K + + +++ EK +++ IE
Sbjct: 149 RVLIPKVRIAMRKGHPGFLEAMRKGSGKKPVPGTNITQEVIDDEEKGFIEISKFREIEQL 208
Query: 2970 LKECYSENPLE-NWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMI 2794
L++ SENP++ +K + +I+LI+ ++++ KP + +D +EF++ I EL +I
Sbjct: 209 LEKVCSENPIDPEKSKGWMKAEIKLIKPETVVRVKPMVYSPEDRKEFEIQIKELLDLKVI 268
Query: 2793 RTSNSKHCSSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEW 2614
S S+H S AF+V K +E++R K RMV++Y+ LN T ++ LPN +I ++G
Sbjct: 269 IPSKSQHMSPAFLVEKEAEKRRGKKRMVVNYKKLNEVTIGDSHNLPNMQELITLLRGKNI 328
Query: 2613 FSKFDCKSGFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLD 2434
FS FDCKSGF + L +ES+ LTAF P G Y+W V+PFG K AP FQ M L+
Sbjct: 329 FSSFDCKSGFWQVLLDDESQKLTAFTCPQGHYQWRVVPFGLKQAPSIFQRHMQDALRGLE 388
Query: 2433 N-CVVYIDDILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDIS 2257
+VY+DDI++F+ +H + + + GI LS+KK +FK +I FLG EID
Sbjct: 389 EFSLVYVDDIIVFSDNKNDHQDHVMKVLRRIESLGIILSKKKANLFKEKINFLGLEIDRG 448
Query: 2256 GVKMQPHIAEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWS 2077
Q HI + I D I +K+LQ FLG + +IPKL+ KPL KLKKD W
Sbjct: 449 THTPQNHILDHIHTFPDRIEDKKQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWI 508
Query: 2076 WTKEDKNIINNLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKEEHL 1897
WT+ D + + +K+ PKLY P +KE + I+ETDAS +GGVLK + E EE +
Sbjct: 509 WTQSDTDYVKKIKKGLINFPKLYLP--KKEDSLIIETDASDHFWGGVLKAQ-TTEGEELI 565
Query: 1896 CRYNSGTFKDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDN-STVKAWITQKLQ 1720
CRY+SGTFK ELN+ N KEL AVK + KF +Y+ F +R DN + +K ++ +K+
Sbjct: 566 CRYSSGTFKPAELNYHSNEKELLAVKQVITKFSIYLTPVCFTVRTDNVNLLKGFMNKKIT 625
Query: 1719 NTIIRKEINKLLTDINAYNFDVELIKSEENVYADKLSRE 1603
+ + + + Y F V+ +K E+NV AD L+RE
Sbjct: 626 GDSKQGRLIRWQMWFSHYTFKVDHLKGEQNVLADYLTRE 664
>gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]
Length = 810
Score = 357 bits (915), Expect = 4e-95
Identities = 232/671 (34%), Positives = 360/671 (53%), Gaps = 11/671 (1%)
Frame = -1
Query: 3582 NLSEKRDSERRIKRLEARIERFSYLKDGLTIC*MASHILFKVIYPGFLNRYYSGLVDTGA 3403
NL EK+D+ ++ ++ + +S + + +I +I G+ VDTGA
Sbjct: 150 NLEEKKDNNEQVHYCQSELV-YSNITNPNSI-----YIKGNFFLKGYKTITLHCYVDTGA 203
Query: 3402 QATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEKYNEDIRIRIWEEELKISTVYCYDL 3229
+ S++ +PE W+ K I + N E +++K ++ + E I +Y +
Sbjct: 204 SLCLASKHVIPEDLWENTPKDIKVTIANQETIKLDKVCRNLIVYFSGEPFPIPIIYQQET 263
Query: 3228 ESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSETIKAPRIRNQKRIKQPWIKGSSKVNQ 3049
D++LG +F ++Y P I F L N E I +I +I + S K +
Sbjct: 264 -GIDLLLGNNFCQLYGPFTQWIDRISFHL--NEEMILIKKITKAFQIGKTGFLESMKKDS 320
Query: 3048 KVEYKYVNNI-------EKCIFTVTQKEIIELKLKECYSENPLE-NWNKHKTEVKIELIE 2893
K + NI E+ + + + IE L++ SENP++ + + IELI+
Sbjct: 321 KAKQIPGTNITQEVIKPERFFLEIQKYQKIEELLEKVCSENPIDPEKSNYWMNASIELID 380
Query: 2892 RDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSKHCSSAFIVMKHSEQKRNKSRM 2713
++I +KP + +D EEF I EL +I S S H S AF+V +E++R K RM
Sbjct: 381 PKTVIREKPMKYSPQDREEFSKQIKELLDLKIIIPSKSPHMSPAFLVENEAEKRRGKKRM 440
Query: 2712 VIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDCKSGFHHLKLTEESKALTAFIV 2533
V++Y+ +NA TK ++ LP ++ ++G +FS FDCK+GF + L EES+ LTAF
Sbjct: 441 VVNYKAINAATKGDSHNLPCMQELLTLLRGKIYFSSFDCKNGFWQVLLDEESQLLTAFTC 500
Query: 2532 PNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLDN-CVVYIDDILLFTRTYEEHVRIIENF 2356
P+G Y+W V+PFG K AP FQ M + L+N C VY+DDI++F+ + E+H + +
Sbjct: 501 PDGHYQWKVVPFGLKQAPSIFQRHMQNALRGLENYCTVYVDDIIVFSDSEEKHYFHVLSV 560
Query: 2355 INITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQPHIAEKIIANTDEINTRKELQS 2176
+ ++ GI LS+KKT +FK +I FLG EID Q HI E + D + +K LQ
Sbjct: 561 LKTIEKYGIILSKKKTNLFKTKINFLGFEIDQGTHCPQKHILENLHKFPDTLEDKKHLQR 620
Query: 2175 FLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDKNIINNLKQVCKELPKLYYPDV 1996
FLG + +IPKL+ +PL KLKKD W W + D + I +K+ PKLY P
Sbjct: 621 FLGILTYAESYIPKLAELRRPLQVKLKKDYVWEWKQSDTSYIKKIKKNLTSFPKLYLPK- 679
Query: 1995 QKEFTWILETDASKDSFGGVLKFRYNKEKEEHLCRYNSGTFKDNELNWDINRKELAAVKI 1816
+KEF I+ETDAS D +GGVLK + EKEE +CRY SG+FK E N+ N KEL AVK
Sbjct: 680 EKEFL-IIETDASNDYWGGVLKAK-TAEKEE-VCRYTSGSFKTAEKNYHSNEKELLAVKN 736
Query: 1815 ALVKFEVYIVFQKFILRVDNSTVKAWITQKLQNTIIRKEINKLLTDINAYNFDVELIKSE 1636
A+ KF +Y+ KF++R D+ ++ K+ + + + + Y FD+E ++
Sbjct: 737 AISKFSIYLTPVKFLVRTDSKNFTYFLKTKISGDNKQGRLVRWQMWFSRYTFDIEHLEGL 796
Query: 1635 ENVYADKLSRE 1603
+NV AD L+R+
Sbjct: 797 KNVLADCLTRD 807
>gb|ADZ44590.1| polyprotein [Dahlia mosaic virus]
Length = 806
Score = 355 bits (911), Expect = 1e-94
Identities = 238/725 (32%), Positives = 374/725 (51%), Gaps = 15/725 (2%)
Frame = -1
Query: 3732 QDREETMELIKQNKTE----ISNLYDKLNMTQQTREEDILMYRLIRNKEDELKENLSEKR 3565
Q+ E ++LI + +TE N+++ E + L + + EK+
Sbjct: 92 QESPEQVKLISKAETEGYYPTENIFNDYMQVYSLEEHEPLTDSDTSSDSSSSHKMNMEKK 151
Query: 3564 DSERRIKRLEARIERFSYLKDGLTIC*MASHILFKVIYPGFLNRYYSGLVDTGAQATIFS 3385
D+ +I + + +S + + +I +I + G+ VDTGA + S
Sbjct: 152 DNNDQIHYCQNELV-YSNITNPNSI-----YIKGNFFFKGYKTITLHCYVDTGASLCLAS 205
Query: 3384 ENCLPE--WKKLEKPINMMGFNGEGNRIEKYNEDIRIRIWEEELKISTVYCYDLESKDII 3211
+ +PE W+ K I + N E +++K ++ + E I T+Y + D++
Sbjct: 206 RHVIPEDLWENTPKDIKVTIANQETTKLDKVCRNLIVYFSGEPFPIPTIYQQE-SGIDLL 264
Query: 3210 LGFDFLKMYLPIIIGKRYIEFTLSPNSETIKAPRIRNQKRIKQPWIKGSSKVNQKVEYKY 3031
LG +F ++Y P I F L N E I +I +I + S K + K +
Sbjct: 265 LGNNFCQLYGPFTQWIDRISFHL--NQEMILIKKITKAFQIGKTGFLESMKKDSKTKQTP 322
Query: 3030 VNNI-------EKCIFTVTQKEIIELKLKECYSENPLE-NWNKHKTEVKIELIERDSLIH 2875
NI E+ + + + IE L++ SENP++ +K IELI+ ++I
Sbjct: 323 GTNITQEVIKPERFFLEIKKYQKIEELLEKVCSENPIDPEKSKCWMNASIELIDPKAVIR 382
Query: 2874 QKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSKHCSSAFIVMKHSEQKRNKSRMVIDYRN 2695
KP + +D EEF I EL + +I S S H S AF+V +E++R K RMV++Y+
Sbjct: 383 VKPMKYSPQDREEFGKQIKELLELKLIIPSKSPHMSPAFLVENEAEKRRRKKRMVVNYKA 442
Query: 2694 LNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDCKSGFHHLKLTEESKALTAFIVPNGFYE 2515
+NA TK ++ LP ++ ++G +FS FDCKSGF + L EES+ LTAF PNG Y+
Sbjct: 443 INAATKGDSHNLPCMQELLTLLRGKTYFSSFDCKSGFWQVLLDEESQLLTAFTCPNGHYQ 502
Query: 2514 WNVLPFGYKNAPGRFQSFMDSCYNQLDN-CVVYIDDILLFTRTYEEHVRIIENFINITKE 2338
W V+PFG K AP FQ M + L+N C VY+D I++F+ + E++ + + + ++
Sbjct: 503 WKVVPFGLKQAPSIFQRHMQNALRGLENYCTVYVDGIIVFSDSEEKYYFHVLSILKTIEK 562
Query: 2337 KGISLSEKKTEIFKNQIEFLGHEIDISGVKMQPHIAEKIIANTDEINTRKELQSFLGTIN 2158
GI LS+KK +FK +I FLG EID Q HI E + D + +K LQ FLG +
Sbjct: 563 YGIILSKKKANLFKTKINFLGLEIDQGTHCPQKHILENLHKFPDTLEDKKHLQRFLGVLT 622
Query: 2157 QLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDKNIINNLKQVCKELPKLYYPDVQKEFTW 1978
+IPKL+ +PL KLKKD W W + D N I +K+ PKLY P +KEF
Sbjct: 623 YAESYIPKLAELRRPLQVKLKKDYVWEWKQSDTNYIKKIKKNLTSFPKLYLPK-EKEFP- 680
Query: 1977 ILETDASKDSFGGVLKFRYNKEKEEHLCRYNSGTFKDNELNWDINRKELAAVKIALVKFE 1798
I+ETDAS D +GGVLK + +E +CRY SG+FK E N+ N K+L AVK + KF
Sbjct: 681 IIETDASNDFWGGVLKAK--TADKEAVCRYTSGSFKTAEKNYHSNEKKLLAVKNTISKFS 738
Query: 1797 VYIVFQKFILRVDNSTVKAWITQKLQNTIIRKEINKLLTDINAYNFDVELIKSEENVYAD 1618
+Y+ KF++R DN ++ K+ + + + + Y+FD+E ++ +NV AD
Sbjct: 739 IYLTPVKFLVRTDNRNFTYFLKTKISGDNKQGRLIRWQMWFSRYSFDIEHLEGSKNVLAD 798
Query: 1617 KLSRE 1603
L+R+
Sbjct: 799 CLTRD 803
>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
protease; Includes: RecName: Full=Endonuclease; Includes:
RecName: Full=Reverse transcriptase
gi|293185|gb|AAA62375.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 679
Score = 355 bits (910), Expect = 2e-94
Identities = 234/657 (35%), Positives = 341/657 (51%), Gaps = 29/657 (4%)
Frame = -1
Query: 3474 HILFKVIYPGFLNRYYSGLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEK 3301
+I ++ + G+ VDTGA I S+ +PE W E+PI + +G I K
Sbjct: 25 YIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISK 84
Query: 3300 YNEDIRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSETI 3121
+DI + I E KI TVY + D I+G +F ++Y P I + FT + S +
Sbjct: 85 VCKDIDLIIAREIFKIPTVYQQE-SGIDFIIGNNFCQLYEPFIQFTDRVIFTKN-KSYPV 142
Query: 3120 KAPRIRNQKRIKQPWIKGSSKVNQKVEYKYVNNI-----------------------EKC 3010
++ R+ S K K + NI EK
Sbjct: 143 HIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLKEIAILSEGRRLSEEKL 202
Query: 3009 IFTVTQKEIIELKLKECYSENPLE-NWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEF 2833
T + + IE L++ SENPL+ N K + I+L + I KP + D EEF
Sbjct: 203 FITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEF 262
Query: 2832 KMHIDELSKTGMIRTSNSKHCSSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPN 2653
I EL +I+ S S H + AF+V +E++R K RMV++Y+ +N T Y LPN
Sbjct: 263 DKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPN 322
Query: 2652 KILMIKKIQGYEWFSKFDCKSGFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGR 2473
K ++ I+G + FS FDCKSGF + L +ES+ LTAF P G YEWNV+PFG K AP
Sbjct: 323 KDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSI 382
Query: 2472 FQSFMDSCYNQLDN-CVVYIDDILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFK 2296
FQ MD + C VY+DDIL+F+ E+H+ + + + GI LS+KK ++FK
Sbjct: 383 FQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFK 442
Query: 2295 NQIEFLGHEIDISGVKMQPHIAEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLK 2116
+I FLG EID K Q HI E I D + +K+LQ FLG + ++IPKL+ K
Sbjct: 443 KKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRK 502
Query: 2115 PLNRKLKKDVQWSWTKEDKNIINNLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGV 1936
PL KLK++V W WTKED + +K+ + P L++P +++ I+ETDAS D +GG+
Sbjct: 503 PLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKL--IIETDASDDYWGGM 560
Query: 1935 LK-FRYNK-EKEEHLCRYNSGTFKDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRV 1762
LK + N+ E +CRY SG+FK E N+ N KE AV + KF +Y+ F++R
Sbjct: 561 LKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRT 620
Query: 1761 DNSTVKAWITQKLQNTIIRKEINKLLTDINAYNFDVELIKSEENVYADKLSREPNVV 1591
DN+ K+++ + + ++ Y+FDVE IK +N +AD LSRE N V
Sbjct: 621 DNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKV 677
>ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
Reverse transcriptase] [Figwort mosaic virus]
gi|130600|sp|P09523.1|POL_FMVD RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58813|emb|CAA29527.1|
unnamed protein product [Figwort mosaic virus]
Length = 666
Score = 355 bits (910), Expect = 2e-94
Identities = 225/634 (35%), Positives = 342/634 (53%), Gaps = 12/634 (1%)
Frame = -1
Query: 3462 KVIYPGFLNRYYSGLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEKYNED 3289
K+ + G+ + VDTGA I S +PE W+ K I + N E +I K ++
Sbjct: 38 KLSFEGYKSFNIHCYVDTGASLCIASRYIIPEELWENSPKDIQVKIANQELIKITKVCKN 97
Query: 3288 IRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSETIKAPR 3109
++++ + +I TVY + D ++G +F ++Y P I + I F L +E + +
Sbjct: 98 LKVKFAGKSFEIPTVYQQET-GIDFLIGNNFCRLYNPFIQWEDRIAFHLK--NEMVLIKK 154
Query: 3108 IRNQKRIKQPWIKGSSKVNQKVEY-------KYVNNIEKCIFTVTQK-EIIELKLKECYS 2953
+ + P + K + K E K + N E+ F +T+K + IE L + S
Sbjct: 155 VTKAFSVSNPSFLENMKKDSKTEQIPGTNISKNIINPEERYFLITEKYQKIEQLLDKVCS 214
Query: 2952 ENPLENW-NKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSK 2776
ENP++ +K + I+LI+ +I KP + + +D E F I EL G+I S S+
Sbjct: 215 ENPIDPIKSKQWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQ 274
Query: 2775 HCSSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDC 2596
H S AF+V +E++R K RMV++Y+ +N T ++ LPN ++ ++G FS FDC
Sbjct: 275 HMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDC 334
Query: 2595 KSGFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLDN-CVVY 2419
KSGF + L EES+ LTAF P G ++W V+PFG K AP FQ M + N D C+VY
Sbjct: 335 KSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCMVY 394
Query: 2418 IDDILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQP 2239
+DDI++F+ + +H + + I ++ GI LS+KK +FK +I FLG EID Q
Sbjct: 395 VDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCPQN 454
Query: 2238 HIAEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDK 2059
HI E I D + +K LQ FLG + +IPKL+ KPL KLKKDV W+WT+ D
Sbjct: 455 HILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDS 514
Query: 2058 NIINNLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGVLKFRYNKEKEEHLCRYNSG 1879
+ + +K+ PKLY P + E I+ETDAS +GGVLK R + E +CRY+SG
Sbjct: 515 DYVKKIKKNLGSFPKLYLP--KPEDHLIIETDASDSFWGGVLKAR-ALDGVELICRYSSG 571
Query: 1878 TFKDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVDNSTVKAWITQKLQNTIIRKE 1699
+FK E N+ N KEL AVK + KF Y+ +F +R DN ++ L+ +
Sbjct: 572 SFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGR 631
Query: 1698 INKLLTDINAYNFDVELIKSEENVYADKLSREPN 1597
+ + + Y FDVE ++ +NV AD L+R+ N
Sbjct: 632 LVRWQNWFSKYQFDVEHLEGVKNVLADCLTRDFN 665
>gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 354 bits (909), Expect = 2e-94
Identities = 235/656 (35%), Positives = 351/656 (53%), Gaps = 28/656 (4%)
Frame = -1
Query: 3474 HILFKVIYPGFLNRYYSGLVDTGAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEK 3301
+I ++ + G+ VDTGA I S+ +PE W E+PI + +G I K
Sbjct: 25 YIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISK 84
Query: 3300 YNEDIRIRIWEEELKISTVYCYDLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPN---- 3133
+DI + I E KI TVY + D I+G +F ++Y P I + FT + +
Sbjct: 85 VCKDIDLIIAGEIFKIPTVYQQE-SGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVH 143
Query: 3132 -SETIKAPRI-----------RNQKRIKQPWIKGSSKV-NQKVEYKYVNN-----IEKCI 3007
++ +A R+ R++ + +P ++K+ N K E ++ EK
Sbjct: 144 IAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIENPKEEIAILSEGRRLAEEKLF 203
Query: 3006 FTVTQKEIIELKLKECYSENPLE-NWNKHKTEVKIELIERDSLIHQKPFNNTEKDIEEFK 2830
T + + IE L++ SENPL+ N K + I+L + I KP + D EEF
Sbjct: 204 ITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFD 263
Query: 2829 MHIDELSKTGMIRTSNSKHCSSAFIVMKHSEQKRNKSRMVIDYRNLNAKTKTYNYPLPNK 2650
I EL +I+ S S H + AF+V +E++R K RMV++Y+ +N T Y LPNK
Sbjct: 264 KQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNK 323
Query: 2649 ILMIKKIQGYEWFSKFDCKSGFHHLKLTEESKALTAFIVPNGFYEWNVLPFGYKNAPGRF 2470
++ I+G + FS FDCKSGF + L +ES+ LTAF P G YEWNV+PFG K AP F
Sbjct: 324 DELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIF 383
Query: 2469 QSFMDSCYNQLDN-CVVYIDDILLFTRTYEEHVRIIENFINITKEKGISLSEKKTEIFKN 2293
Q MD + C VY+DDIL+F+ E+H+ + + + GI LS+KK ++FK
Sbjct: 384 QRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKK 443
Query: 2292 QIEFLGHEIDISGVKMQPHIAEKIIANTDEINTRKELQSFLGTINQLREFIPKLSTTLKP 2113
+I FLG EID K Q HI E I D + +K+LQ FLG + ++IPKL+ KP
Sbjct: 444 KINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKP 503
Query: 2112 LNRKLKKDVQWSWTKEDKNIINNLKQVCKELPKLYYPDVQKEFTWILETDASKDSFGGVL 1933
L KLK++V W WTKED + +K+ + P L++P +++ I+ETDAS D +GG+L
Sbjct: 504 LQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKL--IIETDASDDYWGGML 561
Query: 1932 K-FRYNK-EKEEHLCRYNSGTFKDNELNWDINRKELAAVKIALVKFEVYIVFQKFILRVD 1759
K + N+ E +CRY SG+FK E N+ N KE AV + KF +Y+ F++R D
Sbjct: 562 KAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTD 621
Query: 1758 NSTVKAWITQKLQNTIIRKEINKLLTDINAYNFDVELIKSEENVYADKLSREPNVV 1591
N+ K+++ + + ++ Y+FDVE IK +N +AD LSRE N V
Sbjct: 622 NTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKV 677
>gb|ABW80581.1| polyprotein [Dahlia mosaic virus]
Length = 812
Score = 354 bits (908), Expect = 3e-94
Identities = 233/673 (34%), Positives = 358/673 (53%), Gaps = 11/673 (1%)
Frame = -1
Query: 3588 KENLSEKRDSERRIKRLEARIERFSYLKDGLTIC*MASHILFKVIYPGFLNRYYSGLVDT 3409
K NL E D++ ++ ++ + +S + + +I +I K+ G+ VDT
Sbjct: 150 KFNLRETIDNDEQVHCCQSELV-YSNITNPNSI-----YIKGKIFLKGYKTITLHCYVDT 203
Query: 3408 GAQATIFSENCLPE--WKKLEKPINMMGFNGEGNRIEKYNEDIRIRIWEEELKISTVYCY 3235
GA + S++ +PE W+ K I + N E +++K ++ + E I T+Y
Sbjct: 204 GASLCLASKHVIPEDLWENTPKDIKVTIANQETIKLDKVCRNLIVYFSGEPFPIPTIYQQ 263
Query: 3234 DLESKDIILGFDFLKMYLPIIIGKRYIEFTLSPNSETIKAPRIRNQKRIKQPWIKGSSKV 3055
+ D++LG +F ++Y P I F L N E I +I +I + S K
Sbjct: 264 E-SGIDLLLGNNFCQLYGPFTQWIDRISFHL--NQEMILIKKITKAFQIGKTGFLESMKK 320
Query: 3054 NQKVEYKYVNNI-------EKCIFTVTQKEIIELKLKECYSENPLE-NWNKHKTEVKIEL 2899
+ K + NI E+ + + + IE L++ ENP++ +K+ IEL
Sbjct: 321 DSKTKQIPGTNITQEVIKPERFFLEIQRYQKIEDLLEKVCFENPIDPEKSKYWMNASIEL 380
Query: 2898 IERDSLIHQKPFNNTEKDIEEFKMHIDELSKTGMIRTSNSKHCSSAFIVMKHSEQKRNKS 2719
I+ +++ KP + +D EEF I EL +I S S H S AF+V +E++R K
Sbjct: 381 IDPKTVVRVKPMKYSPQDREEFGKQIKELLDLKLIIPSKSPHMSPAFLVENEAEKRRGKK 440
Query: 2718 RMVIDYRNLNAKTKTYNYPLPNKILMIKKIQGYEWFSKFDCKSGFHHLKLTEESKALTAF 2539
R V++Y+ +NA TK ++ LP ++ ++G FS FDCKSGF + L EES+ LTAF
Sbjct: 441 RRVVNYKAINAATKGDSHNLPCMQELLTLLRGKTIFSTFDCKSGFWQVLLNEESQLLTAF 500
Query: 2538 IVPNGFYEWNVLPFGYKNAPGRFQSFMDSCYNQLDN-CVVYIDDILLFTRTYEEHVRIIE 2362
P+G Y+W V+PFG K AP FQ M + L+N C VY+DDI++F+ + E+H +
Sbjct: 501 TCPDGHYQWRVVPFGLKQAPSIFQRHMQNALRGLENYCTVYVDDIIVFSDSEEKHYFHVL 560
Query: 2361 NFINITKEKGISLSEKKTEIFKNQIEFLGHEIDISGVKMQPHIAEKIIANTDEINTRKEL 2182
+ + ++ GI LS+KK +FK +I FLG EID Q HI E + D + +K L
Sbjct: 561 SALKTIEKYGIILSKKKANLFKTKINFLGLEIDQGTHCPQKHILENLHKFPDTLEDKKHL 620
Query: 2181 QSFLGTINQLREFIPKLSTTLKPLNRKLKKDVQWSWTKEDKNIINNLKQVCKELPKLYYP 2002
Q FLG + +IPKL+ KPL KLKKD W W + D N I +K+ PKLY P
Sbjct: 621 QRFLGVLTYAESYIPKLAELRKPLQVKLKKDYVWEWKQSDTNYIKKIKKNLTSFPKLYLP 680
Query: 2001 DVQKEFTWILETDASKDSFGGVLKFRYNKEKEEHLCRYNSGTFKDNELNWDINRKELAAV 1822
+KEF I+ETDAS D +GGVLK + +KEE +CRY SG+FK E N+ N KEL AV
Sbjct: 681 K-EKEFL-IIETDASNDFWGGVLKAK-TADKEE-VCRYTSGSFKTAERNYHSNEKELLAV 736
Query: 1821 KIALVKFEVYIVFQKFILRVDNSTVKAWITQKLQNTIIRKEINKLLTDINAYNFDVELIK 1642
K + KF +Y+ KF++R DN ++ K+ + + + + Y+FD+E ++
Sbjct: 737 KNTISKFSIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQGRLVRWQMWFSRYSFDIEHLE 796
Query: 1641 SEENVYADKLSRE 1603
+NV AD L R+
Sbjct: 797 GSKNVLADCLPRD 809