BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00005374
         (880 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   587   e-165
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   587   e-165
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   586   e-165
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   584   e-164
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   584   e-164
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   584   e-164
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   584   e-164
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   583   e-164
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 583   e-164
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   581   e-163
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   525   e-146
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             434   e-119
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   431   e-118
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   412   e-113
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   394   e-107
gb|AFM77886.1| replicase [Hosta virus X]                              385   e-104
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   385   e-104
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   378   e-102
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               371   e-100
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 370   e-100

>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  587 bits (1514), Expect = e-165
 Identities = 284/292 (97%), Positives = 292/292 (100%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            LKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML
Sbjct: 1057 LKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 1116

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA
Sbjct: 1117 YGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 1176

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1177 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTH 1236

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYL
Sbjct: 1237 TRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYL 1296

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1297 ITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  587 bits (1514), Expect = e-165
 Identities = 284/292 (97%), Positives = 291/292 (99%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            LKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML
Sbjct: 1057 LKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 1116

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA
Sbjct: 1117 YGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 1176

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1177 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTH 1236

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYL
Sbjct: 1237 TRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYL 1296

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1297 ITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  586 bits (1510), Expect = e-165
 Identities = 283/292 (96%), Positives = 292/292 (100%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            LKK+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVML
Sbjct: 1062 LKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVML 1121

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA
Sbjct: 1122 YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 1181

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH
Sbjct: 1182 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 1241

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL
Sbjct: 1242 TRFDIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 1301

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1302 ITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDD 1353


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  584 bits (1506), Expect = e-164
 Identities = 282/292 (96%), Positives = 290/292 (99%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            LKKS+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML
Sbjct: 1057 LKKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 1116

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA
Sbjct: 1117 YGTMARYMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 1176

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1177 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTH 1236

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYL
Sbjct: 1237 TRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYL 1296

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1297 ITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  584 bits (1505), Expect = e-164
 Identities = 283/292 (96%), Positives = 290/292 (99%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            LKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML
Sbjct: 1057 LKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 1116

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGA
Sbjct: 1117 YGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGA 1176

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1177 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTH 1236

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYL
Sbjct: 1237 TRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYL 1296

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1297 ITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  584 bits (1505), Expect = e-164
 Identities = 283/292 (96%), Positives = 290/292 (99%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            LKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML
Sbjct: 1057 LKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 1116

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGA
Sbjct: 1117 YGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGA 1176

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1177 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTH 1236

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYL
Sbjct: 1237 TRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYL 1296

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1297 ITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  584 bits (1505), Expect = e-164
 Identities = 283/292 (96%), Positives = 290/292 (99%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            LKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML
Sbjct: 1057 LKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 1116

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGA
Sbjct: 1117 YGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGA 1176

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1177 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTH 1236

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYL
Sbjct: 1237 TRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYL 1296

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1297 ITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  583 bits (1503), Expect = e-164
 Identities = 282/292 (96%), Positives = 289/292 (98%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            LKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML
Sbjct: 1057 LKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 1116

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA
Sbjct: 1117 YGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 1176

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTH
Sbjct: 1177 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTH 1236

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYL
Sbjct: 1237 TRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYL 1296

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDD
Sbjct: 1297 ITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDD 1348


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  583 bits (1502), Expect = e-164
 Identities = 282/292 (96%), Positives = 291/292 (99%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            LKKS++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML
Sbjct: 1045 LKKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 1104

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGA
Sbjct: 1105 YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGA 1164

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH
Sbjct: 1165 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 1224

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYL
Sbjct: 1225 TRFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYL 1284

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+
Sbjct: 1285 ITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDE 1336


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  581 bits (1497), Expect = e-163
 Identities = 280/292 (95%), Positives = 290/292 (99%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            LKKS++QIKGG+RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML
Sbjct: 388  LKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 447

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGA
Sbjct: 448  YGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGA 507

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTH
Sbjct: 508  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTH 567

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYL
Sbjct: 568  TRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYL 627

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 628  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 679


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  525 bits (1351), Expect = e-146
 Identities = 253/292 (86%), Positives = 272/292 (93%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            L KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVML
Sbjct: 1038 LSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVML 1097

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDGA
Sbjct: 1098 YGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGA 1157

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1158 MLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTH 1217

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF IP+  AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYL
Sbjct: 1218 TRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYL 1277

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDD
Sbjct: 1278 ITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDD 1329


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  434 bits (1117), Expect = e-119
 Identities = 213/291 (73%), Positives = 239/291 (82%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            L K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVML
Sbjct: 1064 LSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVML 1123

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFR+ L PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQDGA
Sbjct: 1124 YGTMARYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGA 1183

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1184 MLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTH 1243

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYL
Sbjct: 1244 TRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYL 1303

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGD 875
            ITPKGLIKDP KL ASL+L +A   +G K  +     NY  D  LAY+L D
Sbjct: 1304 ITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKD 1352


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  431 bits (1108), Expect = e-118
 Identities = 212/291 (72%), Positives = 238/291 (81%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            L K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVML
Sbjct: 1064 LSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVML 1123

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQD A
Sbjct: 1124 YGTMARYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAA 1183

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAK+FN+P  +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1184 MLQFEILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTH 1243

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYL
Sbjct: 1244 TRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYL 1303

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGD 875
            ITPKGLIKDP KL ASL+L +A   +G K  +     NY  D  LAY+L D
Sbjct: 1304 ITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKD 1352


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  412 bits (1059), Expect = e-113
 Identities = 210/297 (70%), Positives = 231/297 (77%), Gaps = 5/297 (1%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            L KS   +K GERRQSPDF E  ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVML
Sbjct: 1131 LSKSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVML 1190

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRR RD   P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGA
Sbjct: 1191 YGTMARYMRRIRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGA 1250

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAK+ N+PEWV+EGYLDIKL  +IFLGTLSIMRLTGE  TFDANTECNIAYTH
Sbjct: 1251 MLQFEILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTH 1310

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAE 707
            TRF+IPEG AQ     D A+   C EKPSF L+++ ++L+      KP    Q  G+WAE
Sbjct: 1311 TRFDIPEGVAQ-----DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAE 1365

Query: 708  FCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            FCGYLITPKGLIKDPLKL AS  LAK + K      + N + NY+ D KLAY LGDD
Sbjct: 1366 FCGYLITPKGLIKDPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDD 1418


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  394 bits (1012), Expect = e-107
 Identities = 192/287 (66%), Positives = 228/287 (79%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            L K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVML
Sbjct: 1385 LSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVML 1444

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRR R+A  P  IMINCEK PQ LS W+ NYW F+  +YANDFT FDQSQDGA
Sbjct: 1445 YGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQDGA 1504

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIAYTH
Sbjct: 1505 MLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIAYTH 1564

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
             RF++P+GTAQ+YAGDD A++ + PE+PSFA  K ++ L +KPA   Q+RG WAEFCGYL
Sbjct: 1565 LRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFCGYL 1624

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 863
            ITP G++KDP KL A++ LA+ Q K      +     +++LD KLAY
Sbjct: 1625 ITPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAY 1665


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  385 bits (989), Expect = e-104
 Identities = 191/291 (65%), Positives = 225/291 (77%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            L K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VML
Sbjct: 1137 LSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVML 1196

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRR RD   P +I+INCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGA
Sbjct: 1197 YGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGA 1256

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1257 MLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTH 1316

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
             RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP   PQ +G WAEFCG L
Sbjct: 1317 LRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLL 1376

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGD 875
            ITP+G+IKDP+KLHAS  LA    K G    I   + +Y  D KL+Y LGD
Sbjct: 1377 ITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGD 1423


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  385 bits (989), Expect = e-104
 Identities = 191/291 (65%), Positives = 225/291 (77%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            L K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VML
Sbjct: 1171 LSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVML 1230

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRR RD   P +I+INCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGA
Sbjct: 1231 YGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGA 1290

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1291 MLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTH 1350

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
             RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP   PQ +G WAEFCG L
Sbjct: 1351 LRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLL 1410

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGD 875
            ITP+G+IKDP+KLHAS  LA    K G    I   + +Y  D KL+Y LGD
Sbjct: 1411 ITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGD 1457


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  378 bits (971), Expect = e-102
 Identities = 180/291 (61%), Positives = 222/291 (76%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            L K +  +K GE RQSPDFH++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVML
Sbjct: 1184 LSKPMHMLKNGELRQSPDFHKNTIALFLKSQWVKKMEKLGADKIKPGQTIASFQQAAVML 1243

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRR R+   P ++ INCE++P+ +S W+ N W+F   +YANDFT FDQSQDGA
Sbjct: 1244 YGTMARYMRRMREVFQPTHVFINCEQSPEGMSDWIKNEWNFKGNAYANDFTQFDQSQDGA 1303

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFEILKAK+ ++PEWV+EGYLDIK +  +F GTL IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1304 MLQFEILKAKHHSIPEWVLEGYLDIKTNAHVFTGTLGIMRLTGEGPTFDANTECNIAYTH 1363

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
             RF +P+GTAQ YAGDD  +A +  E+ SF + KN++ L AKP Y PQ +G+WA+FCG+L
Sbjct: 1364 LRFNVPKGTAQAYAGDDSVLACIPEERESFKMWKNKLELTAKPEYFPQMQGEWAQFCGFL 1423

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGD 875
             TP G +K+PLK+ A +ELAK       +  +   + +Y+LD  L Y  GD
Sbjct: 1424 FTPLGALKEPLKMLAVVELAKQ------RGELKKNMRSYALDVLLNYQHGD 1468


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  371 bits (952), Expect = e-100
 Identities = 181/292 (61%), Positives = 224/292 (76%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            L K ++ IK GE RQSPDF +H I +FLKSQWVKK+EKLGA KIKPGQTIASFQQ  VML
Sbjct: 1353 LSKPLNMIKNGENRQSPDFDKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASFQQATVML 1412

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 362
            YGTMARYMRR R A  P NI +NCE+TPQ L+ ++ + W F +P+YANDFT FDQSQDGA
Sbjct: 1413 YGTMARYMRRIRQAFQPPNIQLNCEQTPQQLTTFIKDQWSFDQPAYANDFTQFDQSQDGA 1472

Query: 363  MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 542
            MLQFE+LKAK+ N+PE +I+GY+DIK + K+F G L+IMRLTGEGPTFDANTECNIA+ H
Sbjct: 1473 MLQFEVLKAKHHNIPEAIIQGYIDIKTNAKVFTGVLAIMRLTGEGPTFDANTECNIAFNH 1532

Query: 543  TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 722
            TRF I + TAQ+YAGDD A +++  EK SF  +  ++AL +KP +  Q++G+WAEFCGY 
Sbjct: 1533 TRFHISDDTAQLYAGDDTAFSKIPIEKVSFQGVAKQLALTSKPLFYKQKKGEWAEFCGYS 1592

Query: 723  ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            ITP GLIK+P KL A+L LA  Q K  +KD ++    +YS D  LAY   D+
Sbjct: 1593 ITPLGLIKEPKKLQANLTLAIKQNK--IKDTVN----SYSQDVALAYQHKDE 1638


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  370 bits (950), Expect = e-100
 Identities = 186/295 (63%), Positives = 224/295 (75%), Gaps = 3/295 (1%)
 Frame = +3

Query: 3    LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 182
            L K I+ +K G+ RQSPD+  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  VML
Sbjct: 1213 LAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVML 1272

Query: 183  YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLN---YWDFSKPSYANDFTAFDQSQ 353
            +GTMARYMRR R+   P NI INCE TP+DL+ W +     W F+ PS ANDFTAFDQSQ
Sbjct: 1273 FGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPSLANDFTAFDQSQ 1332

Query: 354  DGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIA 533
            DGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA
Sbjct: 1333 DGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECNIA 1392

Query: 534  YTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFC 713
            +TH +F+IP+GTAQ+YAGDD AI    P + SF L++ ++ L++KPA   QE+G WAEFC
Sbjct: 1393 FTHAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFC 1452

Query: 714  GYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 878
            GY ITPKG IKDP KLHASL L   +KK G    + NV+ +Y LD  LAY   D+
Sbjct: 1453 GYRITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLRSYELDLALAYQHRDE 1501