BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00004442
         (1665 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001686783.1| putative RNA dependent RNA polymerse [Raphan...   615   e-173
ref|YP_001274391.1| RNA-dependent RNA polymerase [Fragaria chilo...   575   e-161
emb|CDL67777.1| RNA dependent RNA polymerase [Pigeon pea latent ...   564   e-158
gb|ABV89762.1| putative RNA-dependent RNA polymerase [Rosa multi...   561   e-157
ref|YP_001686786.1| RNA-dependent RNA polymerase [Rose cryptic v...   560   e-157
gb|ADE76327.1| unknown [Picea sitchensis]                             502   e-139
gb|ABY60412.1| RNA dependent RNA polymerase [Rose cryptic virus 1]    347   9e-93
ref|YP_004429258.1| RNA-dependent RNA polymerase [Fig cryptic vi...   308   6e-81
ref|YP_002364401.1| putative RNA-dependent RNA polymerase [Rapha...   293   2e-76
ref|YP_006390091.1| RNA dependent RNA polymerase [Persimmon cryp...   288   6e-75
gb|AEJ07892.1| putative RNA-dependent RNA polymerase [Pepper cry...   288   6e-75
gb|ADP24757.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]    274   7e-71
emb|CBZ05552.1| RNA-dependent RNA-polymerase [Fig cryptic virus]      273   2e-70
emb|CBZ05548.1| RNA-dependent RNA-polymerase [Fig cryptic virus]      272   3e-70
gb|AEJ07890.1| putative RNA-dependent RNA polymerase [Pepper cry...   272   3e-70
gb|AGQ49482.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]    272   4e-70
dbj|BAA34783.1| RNA-dependent RNA polymerase [Pyrus pyrifolia]        271   8e-70
emb|CBZ05549.1| RNA-dependent RNA-polymerase [Fig cryptic virus]      268   7e-69
emb|CBZ05551.1| RNA-dependent RNA-polymerase [Fig cryptic virus]      267   9e-69
emb|CBZ05553.1| RNA-dependent RNA-polymerase [Fig cryptic virus]      261   5e-67

>ref|YP_001686783.1| putative RNA dependent RNA polymerse [Raphanus sativus cryptic virus
            2] gi|77863174|gb|ABB04855.1| putative RNA dependent RNA
            polymerse [Raphanus sativus cryptic virus 2]
          Length = 477

 Score =  615 bits (1585), Expect = e-173
 Identities = 293/474 (61%), Positives = 360/474 (75%)
 Frame = +1

Query: 166  MDHTFRGFPSGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYD 345
            MDH FR    GL  +G +S R   +EFK+I D YA EA+  FVP T+  +L+GWARS Y 
Sbjct: 1    MDHEFRKIREGLIEIGTVSLRVQRDEFKVIIDEYAAEAVFKFVPSTMLSQLQGWARSVYS 60

Query: 346  RQKHIEAIEAYNNPKVPEPTDAAWNTTKQHVIALFRSFATVHSISYQHFDDVKWLAASAA 525
              +H++AI AY   K+PEPTD  WN TKQH + LFR F  +  ISY+ FD+VKW+++S+A
Sbjct: 61   LDQHVDAILAYRRQKLPEPTDDVWNQTKQHTLQLFRRFPKITPISYKSFDEVKWISSSSA 120

Query: 526  GYGYTGRKGDPGIYKQAKRTAVTMAEKLQRDPHFGAQAINDSTPDLAFKRIQLSQVKVKS 705
            GYGY G KGD   Y +A+RTAVT+AEKL  D ++  +AIN STPD+AF R QLSQVKVK+
Sbjct: 121  GYGYVGHKGDGDNYLKARRTAVTIAEKLDHDRNYAPEAINQSTPDVAFTRTQLSQVKVKT 180

Query: 706  KIRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYM 885
            K+RNVWGEAF YVLLEGLFADPLI FF  E +FYFIG +PLLSVP  I E+    DYVY 
Sbjct: 181  KVRNVWGEAFHYVLLEGLFADPLINFFSNEESFYFIGRNPLLSVPTLIEEIFKSKDYVYA 240

Query: 886  FDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKT 1065
            FDWSGFDASVQ+WE+R AF CLE  L FPSNVE QIWRFI+ELFIYRKIA P GTL++KT
Sbjct: 241  FDWSGFDASVQEWEIRFAFQCLESQLIFPSNVEAQIWRFIVELFIYRKIAAPNGTLFLKT 300

Query: 1066 HGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDRFSE 1245
             GIPSGSCFTN+IGS+VNYVRIQYMF++LT+ F E  THGDDSLAAV + QY+PL++F  
Sbjct: 301  LGIPSGSCFTNMIGSVVNYVRIQYMFKKLTDDFVEAYTHGDDSLAAVSTAQYIPLEKFGP 360

Query: 1246 IATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSA 1425
            I  P  W IN  KS VS      +FLSR++RD+QN RDE +CLRML +PEY V  G +SA
Sbjct: 361  ICEPFMWSINTLKSEVSREGRLTTFLSRSIRDKQNYRDEFVCLRMLVYPEYEVEDGSISA 420

Query: 1426 LRAQSIMTDAGINSQYLYNIYVYLRRKHGIAQSLPYSLIRWDETEYEARRTSAS 1587
            LRA+SI  DAGI+SQYLY++++YL++K+G+A +LP++L  WD TE+EA R S S
Sbjct: 421  LRAKSIYVDAGIHSQYLYHVFLYLKQKYGLANTLPHNLRTWDPTEHEALRASYS 474


>ref|YP_001274391.1| RNA-dependent RNA polymerase [Fragaria chiloensis cryptic virus]
            gi|117912931|gb|AAZ06131.2| RNA-dependent RNA polymerase
            [Fragaria chiloensis cryptic virus]
          Length = 479

 Score =  575 bits (1481), Expect = e-161
 Identities = 288/472 (61%), Positives = 343/472 (72%)
 Frame = +1

Query: 166  MDHTFRGFPSGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYD 345
            M+H FRG P GL  L EI  RR  EE  +  D ++ +AI+  VP +L+ EL+GWARSYY 
Sbjct: 1    MEHRFRGIPRGLIELEEIPTRRLREERVVHIDAWSSKAIDAIVPLSLRIELDGWARSYYT 60

Query: 346  RQKHIEAIEAYNNPKVPEPTDAAWNTTKQHVIALFRSFATVHSISYQHFDDVKWLAASAA 525
             Q HI++I  Y+ PK+P+PT+AAWNTT QHV   F     V ++SY   D VKW+ +SAA
Sbjct: 61   LQAHIDSIMQYDRPKLPQPTNAAWNTTTQHVRTQFARMDKVQTLSYLQLDQVKWVRSSAA 120

Query: 526  GYGYTGRKGDPGIYKQAKRTAVTMAEKLQRDPHFGAQAINDSTPDLAFKRIQLSQVKVKS 705
            GYGY GRK D   Y +A++TA T+AEKL  D  +G  A+ DSTPD+AF R QL Q+KVK 
Sbjct: 121  GYGYVGRKSDNDNYFRARKTAFTIAEKLNHDRDYGPLALEDSTPDIAFTRTQLCQIKVKR 180

Query: 706  KIRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYM 885
            KIRNVWGEAF YVLLEGLFADP+I  F R ++FYFIG DPLL+VP  + ++LS+ DYVYM
Sbjct: 181  KIRNVWGEAFHYVLLEGLFADPIIQHFIRNKSFYFIGEDPLLAVPRLVEKILSEQDYVYM 240

Query: 886  FDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKT 1065
            FDWSGFDASVQ+WE+R AF  LE +L FPS+VE  IW FIIELFIYRKIA P G +Y+KT
Sbjct: 241  FDWSGFDASVQEWEIRFAFSLLESILIFPSSVESYIWHFIIELFIYRKIAAPNGKVYLKT 300

Query: 1066 HGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDRFSE 1245
             GIPSGSCFTNIIGSIVNYVRIQY+F RLTN F  V THGDDSL  V +TQYV +D F  
Sbjct: 301  LGIPSGSCFTNIIGSIVNYVRIQYLFFRLTNNFVTVFTHGDDSLVGVSTTQYVQMDNFEP 360

Query: 1246 IATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSA 1425
            I     W IN+ KSAVS   E +SFLSR VR+  +ARDEL+CLRML FPEY V SG +S 
Sbjct: 361  ICAEHNWTINIAKSAVSHEAEGVSFLSRKVREHCHARDELLCLRMLKFPEYVVESGAMST 420

Query: 1426 LRAQSIMTDAGINSQYLYNIYVYLRRKHGIAQSLPYSLIRWDETEYEARRTS 1581
            LRA SI  DAGINS+YLY+IY YL  ++G A SLP +   WD  EYE  R S
Sbjct: 421  LRAHSIHQDAGINSRYLYSIYKYLLHRYGKADSLPLNQQNWDPLEYENLRVS 472


>emb|CDL67777.1| RNA dependent RNA polymerase [Pigeon pea latent virus]
          Length = 475

 Score =  564 bits (1454), Expect = e-158
 Identities = 275/475 (57%), Positives = 342/475 (72%)
 Frame = +1

Query: 166  MDHTFRGFPSGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYD 345
            MDH +RG   GL  L EI  RR  +E +++ D YA EAI  +VP  L+ ELEGWARSYY 
Sbjct: 1    MDHRWRGATRGLIRLEEIPTRRIRDERRILIDEYASEAINRYVPLHLRAELEGWARSYYT 60

Query: 346  RQKHIEAIEAYNNPKVPEPTDAAWNTTKQHVIALFRSFATVHSISYQHFDDVKWLAASAA 525
             + H+ AI  Y+ PK+ +P+DAAW +T  HV   FR    V ++S+ H D VKW+ +SAA
Sbjct: 61   LETHLNAIMNYDRPKLSQPSDAAWVSTMHHVREQFRQMDKVTALSHYHLDKVKWVRSSAA 120

Query: 526  GYGYTGRKGDPGIYKQAKRTAVTMAEKLQRDPHFGAQAINDSTPDLAFKRIQLSQVKVKS 705
            GYGY G K DPG Y++A+ TA T+AE+L  +  +  +A+ +STPD+AF R QL Q+K+K 
Sbjct: 121  GYGYVGLKSDPGNYERARTTAFTIAERLNHERDYAPEALKNSTPDVAFTRTQLCQIKIKR 180

Query: 706  KIRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYM 885
            K+RNVWGEAF YVLLEGLFADPLI  F +  +FYFIG DPLL+VP  I ++LS+ DYVYM
Sbjct: 181  KVRNVWGEAFHYVLLEGLFADPLIQHFMKIDSFYFIGQDPLLAVPYLIEDILSESDYVYM 240

Query: 886  FDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKT 1065
            FDWSGFD+SV +WE+R AF  LE +L FPS+VE  +WRFIIELFIYRKIA P G +Y+KT
Sbjct: 241  FDWSGFDSSVHEWEIRFAFELLESLLVFPSSVEQHVWRFIIELFIYRKIASPNGVMYLKT 300

Query: 1066 HGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDRFSE 1245
             GIPSGSCFTNIIGSI NYVRIQY+F+RLTNRFA V THGDDSLA V + Q++P++  ++
Sbjct: 301  QGIPSGSCFTNIIGSITNYVRIQYIFRRLTNRFANVFTHGDDSLAGVSAVQFIPMENIAQ 360

Query: 1246 IATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSA 1425
            +     W IN+ KS VS   E ++FLSR VR+  +ARDEL CLRML +PEY V SG VS 
Sbjct: 361  VCAEFNWTINVDKSDVSRIAEAVTFLSRNVREMSHARDELTCLRMLKYPEYPVESGAVST 420

Query: 1426 LRAQSIMTDAGINSQYLYNIYVYLRRKHGIAQSLPYSLIRWDETEYEARRTSASQ 1590
            LRA SI  DAG+NS YLY IY +L  K+G A SLP     WD  EYE+ R   SQ
Sbjct: 421  LRALSISKDAGLNSHYLYKIYKFLDIKYGKADSLPLHHKSWDPLEYESLRLPYSQ 475


>gb|ABV89762.1| putative RNA-dependent RNA polymerase [Rosa multiflora cryptic virus]
          Length = 479

 Score =  561 bits (1447), Expect = e-157
 Identities = 281/472 (59%), Positives = 340/472 (72%)
 Frame = +1

Query: 166  MDHTFRGFPSGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYD 345
            M+H FRG P GL  L EI  RR  EE  +  D ++ +AI+  VP +L+ EL+GWARSYY 
Sbjct: 1    MEHRFRGIPRGLIELEEIPTRRLREECVIHIDAWSSQAIDAIVPLSLRNELDGWARSYYT 60

Query: 346  RQKHIEAIEAYNNPKVPEPTDAAWNTTKQHVIALFRSFATVHSISYQHFDDVKWLAASAA 525
             Q H++++  Y+ PK+  PT+ AWN T Q++   F     V ++SY   D VKW+ +SAA
Sbjct: 61   LQAHVDSLMQYDRPKLQPPTNTAWNITTQYIRTEFARMKKVTALSYLQLDQVKWVRSSAA 120

Query: 526  GYGYTGRKGDPGIYKQAKRTAVTMAEKLQRDPHFGAQAINDSTPDLAFKRIQLSQVKVKS 705
            GYGYTGRK D   Y +A++TA T+AEKL  +  +G  A+ DSTPD+AF R QL Q+KVK 
Sbjct: 121  GYGYTGRKSDGDNYIRARKTAFTLAEKLNHNRDYGPLALEDSTPDVAFTRTQLCQIKVKR 180

Query: 706  KIRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYM 885
            KIRNVWGEAF YVLLEGLFADPLI  F R ++FYFIG DPLL+VP  I E+LS+ DY+YM
Sbjct: 181  KIRNVWGEAFHYVLLEGLFADPLIQQFMRIKSFYFIGEDPLLAVPRLIEEILSEQDYIYM 240

Query: 886  FDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKT 1065
            FDWSGFDASVQ+WELR AF  LE +L FPS+VEHQ+W+FIIELFIYRKIA P G +Y+KT
Sbjct: 241  FDWSGFDASVQEWELRFAFGLLESILIFPSSVEHQVWQFIIELFIYRKIAAPNGKIYLKT 300

Query: 1066 HGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDRFSE 1245
             GIPSGSCFTNIIGSIVNYVRIQYMF RLT  F    THGDDSL  V +TQYV ++ F  
Sbjct: 301  LGIPSGSCFTNIIGSIVNYVRIQYMFFRLTREFVTAFTHGDDSLVGVPTTQYVQMENFKP 360

Query: 1246 IATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSA 1425
            I     W IN+ KSA+S   E +SFLSR VR+  +ARDELICLRML FPEY V +G +S 
Sbjct: 361  ICDENLWTINIAKSAISREAEGVSFLSRKVREMCHARDELICLRMLKFPEYIVETGAMST 420

Query: 1426 LRAQSIMTDAGINSQYLYNIYVYLRRKHGIAQSLPYSLIRWDETEYEARRTS 1581
            LRA SI  DAGINS+YLY IY +L  ++G A SLP +   WD  EYE  R S
Sbjct: 421  LRAFSIHKDAGINSRYLYQIYKFLLHRYGKADSLPLNQQNWDPIEYENLRVS 472


>ref|YP_001686786.1| RNA-dependent RNA polymerase [Rose cryptic virus 1]
            gi|167077473|gb|ABZ10945.1| RNA-dependent RNA polymerase
            [Rose cryptic virus 1]
          Length = 479

 Score =  560 bits (1442), Expect = e-157
 Identities = 280/472 (59%), Positives = 340/472 (72%)
 Frame = +1

Query: 166  MDHTFRGFPSGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYD 345
            M+H FRG P GL  L EI  RR  EE  +  D ++ +AI+  VP +L+ EL+GWARSYY 
Sbjct: 1    MEHRFRGIPRGLIELEEIPTRRLREECVIHIDAWSSQAIDAIVPLSLRNELDGWARSYYT 60

Query: 346  RQKHIEAIEAYNNPKVPEPTDAAWNTTKQHVIALFRSFATVHSISYQHFDDVKWLAASAA 525
             Q H++++  Y+ PK+  PT+ AWN T Q++   F     V ++SY   D VKW+ +SAA
Sbjct: 61   LQAHVDSLMQYDRPKLQPPTNTAWNITTQYIRTEFARMKKVTALSYLQLDQVKWVRSSAA 120

Query: 526  GYGYTGRKGDPGIYKQAKRTAVTMAEKLQRDPHFGAQAINDSTPDLAFKRIQLSQVKVKS 705
            GYGYTGRK D   Y +A++TA T+AEKL  +  +G  A+ DSTPD+AF R QL Q+KVK 
Sbjct: 121  GYGYTGRKSDGDNYIRARKTAFTLAEKLNHNRDYGPLALEDSTPDVAFTRTQLCQIKVKR 180

Query: 706  KIRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYM 885
            KIRNVWGEAF YVLLEGLFADPLI  F R ++FYFIG DPLL+VP  I E+LS+ DY+YM
Sbjct: 181  KIRNVWGEAFHYVLLEGLFADPLIQQFMRIKSFYFIGEDPLLAVPRLIEEILSEQDYIYM 240

Query: 886  FDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKT 1065
            FDWSGFDASVQ+WELR AF  LE +L FPS+VEHQ+W+FIIELFIYRKIA P G +Y+KT
Sbjct: 241  FDWSGFDASVQEWELRFAFGLLESILIFPSSVEHQVWQFIIELFIYRKIAAPNGKIYLKT 300

Query: 1066 HGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDRFSE 1245
             GIPSGSCFTNIIGSIVNYVRIQYMF RLT  F    THGDDSL  V +TQYV ++ F  
Sbjct: 301  LGIPSGSCFTNIIGSIVNYVRIQYMFFRLTREFVTAFTHGDDSLVGVPTTQYVQMENFKP 360

Query: 1246 IATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSA 1425
            I     W IN+ KSA+S   E +SFLSR VR+  +ARDELICLRML FPEY V +G +S 
Sbjct: 361  ICDENLWTINIAKSAISREAEGVSFLSRKVREMCHARDELICLRMLKFPEYIVETGAMST 420

Query: 1426 LRAQSIMTDAGINSQYLYNIYVYLRRKHGIAQSLPYSLIRWDETEYEARRTS 1581
            LRA SI  DAGI+S+YLY IY +L  ++G A SLP +   WD  EYE  R S
Sbjct: 421  LRAFSIHKDAGIHSRYLYQIYKFLLHRYGKADSLPLNQQNWDPIEYENLRVS 472


>gb|ADE76327.1| unknown [Picea sitchensis]
          Length = 413

 Score =  502 bits (1293), Expect = e-139
 Identities = 250/413 (60%), Positives = 304/413 (73%)
 Frame = +1

Query: 358  IEAIEAYNNPKVPEPTDAAWNTTKQHVIALFRSFATVHSISYQHFDDVKWLAASAAGYGY 537
            ++AI  Y+ PK  EPT  AWN  KQHV+  FR  + V +ISY+ FD VK+L +S+AGYGY
Sbjct: 1    MDAILKYDRPKSSEPTHQAWNRAKQHVLTEFRRLSEVKAISYKDFDTVKYLRSSSAGYGY 60

Query: 538  TGRKGDPGIYKQAKRTAVTMAEKLQRDPHFGAQAINDSTPDLAFKRIQLSQVKVKSKIRN 717
             G KGDPG Y++AK+TAVT+AEKL  DP +G +AI  STPD+AF R QLSQ+KVK K+RN
Sbjct: 61   VGLKGDPGNYERAKKTAVTIAEKLNHDPAYGPEAIAHSTPDVAFTRTQLSQIKVKRKVRN 120

Query: 718  VWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYMFDWS 897
            VWGEAF +VLLEGLFADPLI  F    TFYFIG DPLL+VP  I+E+LS  DYVY  DWS
Sbjct: 121  VWGEAFHHVLLEGLFADPLIQHFMDRTTFYFIGKDPLLAVPALIQEILSYTDYVYQLDWS 180

Query: 898  GFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKTHGIP 1077
             FD+SVQ+WE+R AFHCLEQ+L +PS VE QIW F+ ELFIYRKIA P   + +KT GIP
Sbjct: 181  AFDSSVQEWEIRFAFHCLEQLLVYPSKVEKQIWHFVKELFIYRKIACPDQKVRLKTLGIP 240

Query: 1078 SGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDRFSEIATP 1257
            SGSCFTNI+GSIVNYVRIQ++F +LT+R A   THGDDSLA VD+TQY+ L         
Sbjct: 241  SGSCFTNIVGSIVNYVRIQFLFLKLTHRPAVAYTHGDDSLAGVDATQYIQLSILQAECDQ 300

Query: 1258 LGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSALRAQ 1437
              W++N  KS +S+  EQ  FLSRTV++ QN RD L CLRML +PEY VP G +S LRA 
Sbjct: 301  YNWQLNGLKSLISTVAEQTVFLSRTVKEGQNFRDTLTCLRMLKYPEYPVPCGSISTLRAF 360

Query: 1438 SIMTDAGINSQYLYNIYVYLRRKHGIAQSLPYSLIRWDETEYEARRTSASQSL 1596
            SI  D+G++S  L  IY YL  K+G+AQSLP +L RWD  EYE  R S S++L
Sbjct: 361  SIAKDSGLSSALLTQIYQYLESKYGMAQSLPLNLQRWDPLEYELLRQSYSETL 413


>gb|ABY60412.1| RNA dependent RNA polymerase [Rose cryptic virus 1]
          Length = 282

 Score =  347 bits (890), Expect = 9e-93
 Identities = 174/275 (63%), Positives = 203/275 (73%)
 Frame = +1

Query: 757  LFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYMFDWSGFDASVQDWELRN 936
            +FA+ L   F R + FYFIG DPLL+VP  I E+LS+ DY+YMFDWSGFDASVQ+WELR 
Sbjct: 1    MFANTLFQQFMRIKPFYFIGEDPLLAVPRLIEEILSEQDYIYMFDWSGFDASVQEWELRF 60

Query: 937  AFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKTHGIPSGSCFTNIIGSIV 1116
            AF  LE +L FPS+VEHQ+W+FIIELFIYRKIA P G +Y+KT GIPSGSCFTNIIGSIV
Sbjct: 61   AFGLLESILIFPSSVEHQVWQFIIELFIYRKIAAPNGKIYLKTLGIPSGSCFTNIIGSIV 120

Query: 1117 NYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDRFSEIATPLGWKINLTKSAVS 1296
            NYVRIQYMF RLT  F    THGDDSL  V +TQYV ++ F  I     W IN+ KSA+S
Sbjct: 121  NYVRIQYMFFRLTREFVTAFTHGDDSLVGVPTTQYVQMENFKPICDENLWTINIAKSAIS 180

Query: 1297 SAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSALRAQSIMTDAGINSQYL 1476
               E +SFLSR VR+  +ARDELICLRML FPEY V +G +S LRA SI  DAGINS+YL
Sbjct: 181  REAEGVSFLSRKVREMCHARDELICLRMLKFPEYIVETGAMSTLRAFSIHKDAGINSRYL 240

Query: 1477 YNIYVYLRRKHGIAQSLPYSLIRWDETEYEARRTS 1581
            Y IY +L  ++G A SLP +   WD  EYE  R S
Sbjct: 241  YQIYKFLLHRYGKADSLPLNQQNWDPIEYENLRVS 275


>ref|YP_004429258.1| RNA-dependent RNA polymerase [Fig cryptic virus]
            gi|332163669|emb|CBW77436.1| RNA-dependent RNA polymerase
            [Fig cryptic virus]
          Length = 472

 Score =  308 bits (788), Expect = 6e-81
 Identities = 167/454 (36%), Positives = 258/454 (56%), Gaps = 8/454 (1%)
 Frame = +1

Query: 193  SGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIE 372
            +GL  +G I ER   +EF ++ D  A +++    P    QE++GWARS+Y  +  + +I 
Sbjct: 3    AGLIEIGNIPERHLRDEFIILVDQPAYDSVRRNAPQADMQEIDGWARSFYTVEGIMASIM 62

Query: 373  AYNNPKVPEPTDAAWNTTKQHVIALFRS-FATVHSISYQH-FDDVKWLAASAAGYGYTGR 546
             ++ P + EPTD  WN  K+  +    S F  V S+ ++  FD V + ++S+AGYGY G+
Sbjct: 63   QFSKPLIHEPTDPIWNDVKRETLMKIGSLFPQVQSLPFEGGFDHVPFESSSSAGYGYDGK 122

Query: 547  KGDPGIYKQAKRTAVTMAEKLQRD------PHFGAQAINDSTPDLAFKRIQLSQVKVKSK 708
            KG+   + +AK  A     K   D       +  +  I   TPD+AF R QL+++    K
Sbjct: 123  KGEGNNFHRAKSIANAAVRKFSEDIDNQGYDYAVSHLIQQGTPDIAFTRTQLAKLP-SIK 181

Query: 709  IRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYMF 888
            +R V+GEAF  +L+EGL A PL+  FKR  TFYF G DP + VP  + ++ ++  +    
Sbjct: 182  VRIVFGEAFHNILIEGLSAAPLLEAFKRMDTFYFTGKDPTIYVPRILHKMSTNEGWFICL 241

Query: 889  DWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKTH 1068
            DW  FDASVQ WE+ +AF+C++Q+LAFP+ +    + F  E F  RK+A P G L+++  
Sbjct: 242  DWKAFDASVQLWEIDHAFNCIQQLLAFPTELSRLAFLFTRESFKQRKLADPNGILWMRKG 301

Query: 1069 GIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDRFSEI 1248
            GIPSGS +TNIIGS++NY RI+Y+ +RL  +       GDDSL  +       L +   +
Sbjct: 302  GIPSGSYYTNIIGSVINYNRIEYVCKRLGLQKTSCYVQGDDSLIHITGDAKPDLTQLQML 361

Query: 1249 ATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSAL 1428
                GW +N+ K +++   + ++FL R+   Q N R+ L  LR++ FPEY V    +S  
Sbjct: 362  GEQFGWTLNIPKCSLTQDSQLVTFLGRSQMHQLNIRERLKVLRLMCFPEYKVEDPKISTT 421

Query: 1429 RAQSIMTDAGINSQYLYNIYVYLRRKHGIAQSLP 1530
            R ++I  DAG +      IY+ L+R +G  + LP
Sbjct: 422  RVKAIARDAGWSDPVYNKIYLQLKRLYGEVERLP 455


>ref|YP_002364401.1| putative RNA-dependent RNA polymerase [Raphanus sativus cryptic virus
            3] gi|217039787|gb|ACJ76981.1| putative RNA-dependent RNA
            polymerase [Raphanus sativus cryptic virus 3]
          Length = 481

 Score =  293 bits (749), Expect = 2e-76
 Identities = 172/457 (37%), Positives = 245/457 (53%), Gaps = 8/457 (1%)
 Frame = +1

Query: 172  HTFRGFPSGLTILGEISERRSDEEFKLIY-DPYALEAIEFFVPGTLKQELEGWARSYYDR 348
            + + GF S L    +        E  + Y D +AL++I        +Q L+GW+RSYY  
Sbjct: 11   YVYTGFISDLEETNQRHTNVIRRETAVTYRDEFALQSILDLDYRQYEQHLQGWSRSYYTP 70

Query: 349  QKHIEAIEAYNNPKVPEPTDA--AWNTTKQHVIALFRSFATVHSISY-QHFDDVKWLAAS 519
            +KH EAI  Y+ P +P        +N     V   FRS   V + S     D VK+ ++S
Sbjct: 71   EKHQEAILQYSYPDIPVQAIKMDVYNDCIAQVQNEFRSLPNVRAYSVLTQLDLVKYKSSS 130

Query: 520  AAGYGYTGRKGDPGIYKQAK---RTAVTMAEKLQRDPHFGAQAINDSTPDLAFKRIQLSQ 690
            AAGYGY G KG+PG    A+   R    +   +  D       I  STPD+ + R QL+ 
Sbjct: 131  AAGYGYQGTKGNPGELNHARAISRAKAVLWSAIAADGEGIEHVIKTSTPDIGYTRTQLTD 190

Query: 691  VKVKSKIRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDH 870
            +  K+K+R VWG AF Y+LLEGL ADP I       TF   G DP LSVP  +  +    
Sbjct: 191  LTEKTKVRQVWGRAFHYILLEGLVADPFIQAVMENNTFIHAGRDPTLSVPQLLSHIAETS 250

Query: 871  DYVYMFDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGT 1050
            D++Y  DW  FDA+V  +E+ +AF  ++    FP       +    +LFI++K+A P G 
Sbjct: 251  DWIYSLDWKQFDATVSRFEIESAFTIIKSKTIFPDRETEDAFEITKQLFIHKKVAAPDGK 310

Query: 1051 LYVKTHGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVI-THGDDSLAAVDSTQYVP 1227
            +Y    GIPSGS +T+++GSIVN +RI+Y+++ +  R  ++  T GDDSL   D  + + 
Sbjct: 311  IYFAHKGIPSGSYYTSLVGSIVNRLRIEYLYRLILGRGPKICHTLGDDSLVGDD--ELIV 368

Query: 1228 LDRFSEIATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVP 1407
               F  IA  +GW  N+ K+  S   E +SFL R+ +   N RD   CLR+L FPEY VP
Sbjct: 369  PSSFGLIANRIGWYFNIEKTEYSRIPEMVSFLGRSYKGGLNVRDLKRCLRLLVFPEYPVP 428

Query: 1408 SGDVSALRAQSIMTDAGINSQYLYNIYVYLRRKHGIA 1518
            SG +SA RA+SI  D G  S  L  +   L+R++G+A
Sbjct: 429  SGRISAYRAKSIAEDCGGISDLLNRVAARLKRQYGLA 465


>ref|YP_006390091.1| RNA dependent RNA polymerase [Persimmon cryptic virus]
            gi|388877111|emb|CCH50609.1| RNA dependent RNA polymerase
            [Persimmon cryptic virus]
          Length = 477

 Score =  288 bits (736), Expect = 6e-75
 Identities = 176/457 (38%), Positives = 252/457 (55%), Gaps = 10/457 (2%)
 Frame = +1

Query: 172  HTFRGFPSGLTILGEISERRSDEEFKLIY-DPYALEAIEFFVPGT--LKQELEGWARSYY 342
            + F  F S L +L +        E  + Y D +AL   E  V  T   +QELEGW+RSYY
Sbjct: 9    YEFHDFQSSLELLNQTHIHIVRRESGVTYHDEFAL--CELLVDNTRLYEQELEGWSRSYY 66

Query: 343  DRQKHIEAIEAYNNPKVP--EPTDAAWNTTKQHVIALFRSFATVHSISY-QHFDDVKWLA 513
              ++H++AI  Y+ P  P  +     +     +V     S   V +       D V + +
Sbjct: 67   TGEQHMKAILQYSLPNTPIQDIDVGCYQQAMTNVQERLSSLPIVRAFDVLTQLDQVSFES 126

Query: 514  ASAAGYGYTGRKG--DPGIYKQA-KRTAVTMAEKLQRDPHFGAQAINDSTPDLAFKRIQL 684
            +SAAGY YTG KG  + G +++A +R    +   + +D       +  S PD+ + R QL
Sbjct: 127  SSAAGYDYTGAKGPKNEGNHERAIRRAKAVLWSAIAQDGEGIEHVLRSSVPDVGYTRTQL 186

Query: 685  SQVKVKSKIRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLS 864
            + +  K+K+R VWG AF Y+L EG  ADPL+  FK   TFY IG DP +SVP  + +   
Sbjct: 187  TDLSEKTKVRGVWGRAFHYILPEGTSADPLLQAFKEGGTFYHIGQDPTVSVPYILSDTAG 246

Query: 865  DHDYVYMFDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQ 1044
               ++Y  DWS FDA+V  +E+  AF  L+Q + FP+    Q +    +LFI++KIA P 
Sbjct: 247  KCAWLYALDWSSFDATVSRFEIHAAFDLLKQRIEFPNFETEQCYEICRQLFIHKKIAAPD 306

Query: 1045 GTLYVKTHGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEV-ITHGDDSLAAVDSTQY 1221
            G +Y    GIPSGS +T+IIGSI+N +RI+Y++ +L      +  T GDDSL   D  + 
Sbjct: 307  GKVYWAHKGIPSGSYYTSIIGSIINRLRIEYIWIKLRGHGPTICYTQGDDSLCGDD--ER 364

Query: 1222 VPLDRFSEIATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYH 1401
            +  +R ++IA P+GW IN  K+A +   E I+FL RT     N RD + CLR+L +PEY 
Sbjct: 365  IEPERIADIANPIGWLINPAKTATTRYPEYITFLGRTCYGGLNHRDLIRCLRLLIYPEYP 424

Query: 1402 VPSGDVSALRAQSIMTDAGINSQYLYNIYVYLRRKHG 1512
            VPSG +SA RA SI  D G  S  L +I   L RK+G
Sbjct: 425  VPSGAISAYRANSIAEDCGGTSSILNDIARRLTRKYG 461


>gb|AEJ07892.1| putative RNA-dependent RNA polymerase [Pepper cryptic virus 2]
          Length = 478

 Score =  288 bits (736), Expect = 6e-75
 Identities = 173/436 (39%), Positives = 246/436 (56%), Gaps = 8/436 (1%)
 Frame = +1

Query: 238  EEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIEAYNNPKVPEP---TD 408
            EE     D +AL+ +    P   +Q LEGW+RSYY+  KH++AI  Y  P  P+P    +
Sbjct: 33   EEATTYRDEFALKELMDLSPILYEQFLEGWSRSYYEGSKHLQAIIQYGIPD-PDPGLIDN 91

Query: 409  AAWNTTKQHVIALFRSFATVHSISY-QHFDDVKWLAASAAGYGYTGRKGD---PGIYKQA 576
              +N     V+    S   V +       D V +  +S+AGY Y G KG        +  
Sbjct: 92   DIYNKAGYVVLESLGSLPRVRAFDVLTELDSVHYEQSSSAGYDYHGPKGPIQGENHIRAI 151

Query: 577  KRTAVTMAEKLQRDPHFGAQAINDSTPDLAFKRIQLSQVKVKSKIRNVWGEAFQYVLLEG 756
             R   T+   ++ +       I  + PD+ + R QL+ +  K+KIR VWG AF Y+LLEG
Sbjct: 152  TRAKATLWSAIKDEGEGIEHVIRSAVPDVGYTRTQLTDLYEKTKIRGVWGRAFHYILLEG 211

Query: 757  LFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYMFDWSGFDASVQDWELRN 936
              A+PL+  FKR  TFY IG +P  SVP  + ++     Y+   DWS FDA+V  +E+  
Sbjct: 212  TIANPLLDVFKRGGTFYHIGENPQYSVPDILSQVSECCKYLVAIDWSNFDATVARFEINM 271

Query: 937  AFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKTHGIPSGSCFTNIIGSIV 1116
            AF  ++ ++ FP+      +    +LFI++KIA P G +Y    GIPSGS FT+IIGSIV
Sbjct: 272  AFDLIKTLIMFPNIETELCFEICRQLFIHKKIAAPDGNIYWSRKGIPSGSYFTSIIGSIV 331

Query: 1117 NYVRIQYMFQRLTNRFAEV-ITHGDDSLAAVDSTQYVPLDRFSEIATPLGWKINLTKSAV 1293
            N +R++Y+F++  +   ++  T GDDSL  VD    V  DR SEIA PL WK+N  K+ V
Sbjct: 332  NRLRVEYIFRKAYDVGPKMCYTQGDDSLIGVDFR--VDPDRLSEIAAPLNWKLNPAKTDV 389

Query: 1294 SSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSALRAQSIMTDAGINSQY 1473
            S   E ++FL RT+    N RD   CLR+L FPE+ VPSG++SA RA SI  DAG  S+ 
Sbjct: 390  SLYPEHVTFLGRTMYGGINQRDLKRCLRLLIFPEFPVPSGEISAYRAVSIAQDAGGTSEI 449

Query: 1474 LYNIYVYLRRKHGIAQ 1521
            L +I   LRR++G+A+
Sbjct: 450  LNSIAKRLRRQYGVAE 465


>gb|ADP24757.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]
          Length = 475

 Score =  274 bits (701), Expect = 7e-71
 Identities = 169/439 (38%), Positives = 237/439 (53%), Gaps = 9/439 (2%)
 Frame = +1

Query: 259  DPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIEAYNNPKV--PEPTDAAWNTTKQ 432
            D +A + +    P   +  + GW+RSYY  Q+H+ AI  Y  P     E    A+     
Sbjct: 37   DTFAKKELLSRYPALYENLIRGWSRSYYTGQEHLRAIMQYATPNTNFSECVQHAYTKAIT 96

Query: 433  HVIALFRSFATVHSISY-QHFDDVKWLAASAAGYGYTGRKGDPG--IYKQAKRTAVTMAE 603
             V     S  TV + +  +  D + + ++S+AGY Y G KG      + QA +TA  +  
Sbjct: 97   KVTESLHSLPTVRAFNVLEELDLIPYESSSSAGYTYRGVKGPQHGENHMQAIKTAKAVLW 156

Query: 604  KLQRDPHFGAQAINDS-TPDLAFKRIQLSQVKVKSKIRNVWGEAFQYVLLEGLFADPLIA 780
             + +D   G + + D+  PD+ + R QL+ ++ K K+R VWG AF Y+LLEG  A PL+ 
Sbjct: 157  SVIKDDGEGIEHVIDTYVPDVGYTRTQLTDLREKMKVRGVWGRAFHYILLEGTSAAPLLE 216

Query: 781  FFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYMFDWSGFDASVQDWELRNAFHCLEQM 960
             F    TF+ IG DP +SVP  I        ++   DW  FDA+V  +E+  AF  ++  
Sbjct: 217  AFANSNTFFHIGKDPTVSVPYLISYTKGQAPWLTAIDWQAFDATVSRFEINAAFDIIKSK 276

Query: 961  LAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKTHGIPSGSCFTNIIGSIVNYVRIQYM 1140
            + FP+    Q +    +LFI++K+A P G +Y    GIPSGS FT+IIGS+VN +RI+Y+
Sbjct: 277  ITFPNLETEQAFEISRQLFIHKKLAAPNGKIYRIHKGIPSGSYFTSIIGSVVNRLRIEYL 336

Query: 1141 FQRLTNRFAEV-ITHGDDSLAAVDSTQYVPLDRFSEIATPLGWKINLTKSAVSSAQEQIS 1317
            +    NR  +V  T GDDSL   D   Y P+D  +    PL W IN +KS  S   E I+
Sbjct: 337  WNLKFNRGPKVCFTQGDDSLIG-DDELYSPMD-MAAFVKPLNWFINTSKSMTSKVPEAIT 394

Query: 1318 FLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSALRAQSIMTDAGINSQYLYNIYVYL 1497
            FL R+     N RD   CLR+L  PEY V SGD+SA RA SI  D+G  SQ L+ I   L
Sbjct: 395  FLGRSSLGGLNQRDLKRCLRLLILPEYPVTSGDISAFRANSIWRDSGSTSQILHEIANAL 454

Query: 1498 RRKHGIA--QSLPYSLIRW 1548
            RRK+GIA  Q +P  L  W
Sbjct: 455  RRKYGIAKEQDVPRYLRPW 473


>emb|CBZ05552.1| RNA-dependent RNA-polymerase [Fig cryptic virus]
          Length = 459

 Score =  273 bits (698), Expect = 2e-70
 Identities = 162/452 (35%), Positives = 245/452 (54%), Gaps = 12/452 (2%)
 Frame = +1

Query: 193  SGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIE 372
            +GL  +G I ER   +EF ++ D  A +++    P    QE++GWARS+Y  +  + +I 
Sbjct: 12   AGLIEIGNIPERHLRDEFIILVDQPAYDSVRRNAPQADMQEIDGWARSFYTVEGIMASIM 71

Query: 373  AYNNPKVPEPTDAAWNTTKQHVIALFRS-FATVHSISYQH-FDDVKWLAASAAGYGYTGR 546
             +  P + EPTD  WN  K+  +    S F  V S+ ++  FD V + ++S+AGYGY  +
Sbjct: 72   QFTKPLIHEPTDPIWNDVKRETLMKIGSLFPQVQSLPFEGGFDHVPFESSSSAGYGYDPK 131

Query: 547  KGDPGIYKQAKRTAVTMAEKLQRD------PHFGAQAINDSTPDLAFKRIQLSQVKVKSK 708
            KG+   + +AKR A     K   D       +  +  I   TPD+AF R QL+++    K
Sbjct: 132  KGEGNNFHRAKRIANAAVRKFSEDIDNQGYDYAVSHLIRQGTPDIAFTRTQLAKLP-SIK 190

Query: 709  IRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYM- 885
            +R V+GEAF  +L+E L A PL+  FKR  TFYF G  P     L  + L  D     M 
Sbjct: 191  VRIVFGEAFHNILIEPLSAAPLLEAFKRMDTFYFTGKGPN---NLRSKNLTQDEHKRTMG 247

Query: 886  ---FDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLY 1056
                    FDASVQ WE+ +AF+C++Q+LA P+ +    + F  E F  RK+A P G L+
Sbjct: 248  LSALTGKAFDASVQLWEIDHAFNCIQQLLASPTELSRLAFLFTRESFKQRKLADPNGILW 307

Query: 1057 VKTHGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDR 1236
            ++  GIPSGS +TNIIGS++NY RI+Y+ +RL  +       GDDSL  +       L +
Sbjct: 308  MRKGGIPSGSYYTNIIGSVINYNRIEYVCKRLGLQKTSCYVQGDDSLIHITGDAKPDLTQ 367

Query: 1237 FSEIATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGD 1416
               +    GW +N+ K +++   + ++FL R+   Q N R+ L  LR++ FPEY V    
Sbjct: 368  LQMLGEQFGWTLNIPKCSLTQDSQLVTFLGRSQMHQLNIRERLKVLRLMCFPEYKVEDPK 427

Query: 1417 VSALRAQSIMTDAGINSQYLYNIYVYLRRKHG 1512
            +S  R ++I  DAG +      IY+ L+R +G
Sbjct: 428  ISTTRVKAIARDAGWSDPVYNKIYLQLKRLYG 459


>emb|CBZ05548.1| RNA-dependent RNA-polymerase [Fig cryptic virus]
          Length = 459

 Score =  272 bits (696), Expect = 3e-70
 Identities = 163/452 (36%), Positives = 246/452 (54%), Gaps = 12/452 (2%)
 Frame = +1

Query: 193  SGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIE 372
            +GL  +G I ER   +EF ++ D  A +++    P    QE++G ARS+Y  +  + +I 
Sbjct: 12   AGLIEIGNIPERHLRDEFIILVDQPAYDSVRRNAPQADMQEIDGCARSFYTVEGIMASIM 71

Query: 373  AYNNPKVPEPTDAAWNTTKQHVIALFRS-FATVHSISYQH-FDDVKWLAASAAGYGYTGR 546
             ++ P + EPTD  WN  K+  +    S F  V S+ ++  FD V + ++S+AGYGY G+
Sbjct: 72   QFSKPLIHEPTDPIWNDVKRETLMKIGSLFPQVQSLPFEGGFDHVPFESSSSAGYGYDGK 131

Query: 547  KGDPGIYKQAKRTAVTMAEKLQRD------PHFGAQAINDSTPDLAFKRIQLSQVKVKSK 708
            KG+     +AK  A     K   D       +  +  I  +TPD+AF R QL+++    K
Sbjct: 132  KGEGNNSHRAKSIANAAVRKFSEDIDNQGYDYAVSHLIQQATPDIAFTRTQLAKLP-SIK 190

Query: 709  IRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYM- 885
            +R V+GEAF  +L+EGL A PL+  FKR  TFYF G  P     L  + L  D     M 
Sbjct: 191  VRIVFGEAFHNILIEGLSAAPLLEAFKRMDTFYFTGKGPN---NLRSKNLTQDEHKRKMG 247

Query: 886  ---FDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLY 1056
                    FDASVQ WE+ +AF+C+ Q+LAFP+ +    + F  E F  RK+A P G L+
Sbjct: 248  LSALTGKAFDASVQLWEIDHAFNCIGQLLAFPTELSRLAFLFTRESFKQRKLADPNGILW 307

Query: 1057 VKTHGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDR 1236
            ++  GIPSGS +TNIIGS++NY RI+Y+ +RL  +       GDDSL  +       L +
Sbjct: 308  MRKGGIPSGSYYTNIIGSVINYNRIEYVCKRLGLQKTSCYVQGDDSLIHITGDAKPDLTQ 367

Query: 1237 FSEIATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGD 1416
               +    GW +N+ K +++   + ++FL R+   Q N R+ L  LR++ FPEY V    
Sbjct: 368  LQMLGEQFGWTLNIPKCSLTQDSQLVTFLGRSQMHQLNIRERLKVLRLMCFPEYKVEDPK 427

Query: 1417 VSALRAQSIMTDAGINSQYLYNIYVYLRRKHG 1512
            +S  R ++I  DAG +      IY+ L+R +G
Sbjct: 428  ISTTRVKAIARDAGWSDPVYNKIYLQLKRLYG 459


>gb|AEJ07890.1| putative RNA-dependent RNA polymerase [Pepper cryptic virus 1]
          Length = 479

 Score =  272 bits (696), Expect = 3e-70
 Identities = 162/428 (37%), Positives = 237/428 (55%), Gaps = 8/428 (1%)
 Frame = +1

Query: 259  DPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIEAYNNPKVPEPTDAAWNTTKQHV 438
            D YA E IE F     +  L+GW+RSYY  +KH+ A+  Y+ P VP  +  + +  +Q +
Sbjct: 39   DQYAYEHIETFSSLYPELILKGWSRSYYLPEKHLAAVLNYSMPNVPA-SQLSQSLYRQAI 97

Query: 439  IALFRSFATVHSIS----YQHFDDVKWLAASAAGYGYTGRKGDPGIYKQAKRTAVTMA-- 600
             +    F ++  +         D V + ++S+AGY YTGRKG  G    ++  ++  A  
Sbjct: 98   ESAKNGFISLPRVKAFDVLTEMDQVPFKSSSSAGYNYTGRKGLIGDENHSRAISIAKAVL 157

Query: 601  -EKLQRDPHFGAQAINDSTPDLAFKRIQLSQVKVKSKIRNVWGEAFQYVLLEGLFADPLI 777
               ++ D       I  S PD+ + R QL+ +  K+K+R VWG AF Y+LLEGL A P I
Sbjct: 158  WSAIKDDGEGIEHVIRTSVPDVGYTRTQLTDLLEKTKVRQVWGRAFHYILLEGLVAYPFI 217

Query: 778  AFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYMFDWSGFDASVQDWELRNAFHCLEQ 957
                  +TF   G DPL+SVP  + ++  +  ++Y  DWS FDA+V  +E+  AF  ++ 
Sbjct: 218  QTVMSHKTFIHAGQDPLISVPRLLSDVALNCKWIYSLDWSQFDATVSRFEIHAAFDIIKS 277

Query: 958  MLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKTHGIPSGSCFTNIIGSIVNYVRIQY 1137
             + FP+    Q +    +LFI++K+A P G +Y    GIPSGS +T+++GSI+NY+RI Y
Sbjct: 278  YVDFPNYETEQAFEITRQLFIHKKVAVPDGYIYESHKGIPSGSYYTSLVGSIINYLRINY 337

Query: 1138 MFQRLTNRFAEVI-THGDDSLAAVDSTQYVPLDRFSEIATPLGWKINLTKSAVSSAQEQI 1314
            +++ LT    +   T GDDSL  V    YV      E A  LGW  N  K+  S+  E+I
Sbjct: 338  LWRLLTGHPPQQCHTLGDDSL--VGDNSYVNPQAIEEAANKLGWHFNPDKTQYSTVPEEI 395

Query: 1315 SFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSALRAQSIMTDAGINSQYLYNIYVY 1494
            +FL RT     N RD   C+R+L +PEY V SG +SA RA+SI  DAG  S+ L  I   
Sbjct: 396  TFLGRTYVGGLNKRDLTKCIRLLVYPEYPVESGRISAYRAKSIAQDAGGLSEVLNRIADK 455

Query: 1495 LRRKHGIA 1518
            LRR +G A
Sbjct: 456  LRRIYGTA 463


>gb|AGQ49482.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]
          Length = 475

 Score =  272 bits (695), Expect = 4e-70
 Identities = 169/439 (38%), Positives = 235/439 (53%), Gaps = 9/439 (2%)
 Frame = +1

Query: 259  DPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIEAYNNPKV--PEPTDAAWNTTKQ 432
            D +A + +    P   +  + GW+RSYY  Q+H+ AI  Y  P     E    A+     
Sbjct: 37   DTFAKKELLSRYPALYENLIRGWSRSYYTGQEHLRAIMQYATPNTNFSECVQHAYTKAIT 96

Query: 433  HVIALFRSFATVHSISY-QHFDDVKWLAASAAGYGYTGRKGDPG--IYKQAKRTAVTMAE 603
             V     S  TV + +  +  D + + ++S+AGY Y G KG      + QA +TA  +  
Sbjct: 97   KVTESLHSLPTVRAFNVLEELDLIPYESSSSAGYTYRGVKGPQHGENHMQAIKTAKAVLW 156

Query: 604  KLQRDPHFGAQAINDS-TPDLAFKRIQLSQVKVKSKIRNVWGEAFQYVLLEGLFADPLIA 780
             + +D   G + + D+  PD+ + R QL+ ++ K K+R VWG AF Y+LLEG  A PL+ 
Sbjct: 157  SVIKDDGEGIEHVIDTYVPDVGYTRTQLTDLREKMKVRGVWGRAFHYILLEGTSAAPLLE 216

Query: 781  FFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYMFDWSGFDASVQDWELRNAFHCLEQM 960
             F    TF+ IG DP +SVP  I        ++   DW  FDA+V  +E+  AF  ++  
Sbjct: 217  AFANSNTFFHIGKDPTVSVPYLISYTKGQAPWLTAIDWQAFDATVSRFEINAAFDIIKSK 276

Query: 961  LAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKTHGIPSGSCFTNIIGSIVNYVRIQYM 1140
            + FP+    Q +    +LFI++K+A P G +Y    GIPSGS FT+IIGS+VN +RI+Y 
Sbjct: 277  ITFPNLETEQAFEISRQLFIHKKLAAPNGKIYRIHKGIPSGSYFTSIIGSVVNRLRIEYS 336

Query: 1141 FQRLTNRFAEV-ITHGDDSLAAVDSTQYVPLDRFSEIATPLGWKINLTKSAVSSAQEQIS 1317
            +    NR  +V  T GDDSL   D   Y P D  +    PL W IN +KS  S   E I+
Sbjct: 337  WNLKFNRGPKVCFTQGDDSLIG-DDELYSPTD-MAAFVKPLNWFINTSKSMTSKVPEAIT 394

Query: 1318 FLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSALRAQSIMTDAGINSQYLYNIYVYL 1497
            FL R+     N RD   CLR+L  PEY V SGD+SA RA SI  D+G  SQ L+ I   L
Sbjct: 395  FLGRSSLGGLNQRDLKRCLRLLILPEYPVTSGDISAFRANSIWRDSGSTSQILHGIANAL 454

Query: 1498 RRKHGIA--QSLPYSLIRW 1548
            RRK+GIA  Q +P  L  W
Sbjct: 455  RRKYGIAKEQDVPRYLRPW 473


>dbj|BAA34783.1| RNA-dependent RNA polymerase [Pyrus pyrifolia]
          Length = 477

 Score =  271 bits (692), Expect = 8e-70
 Identities = 160/432 (37%), Positives = 246/432 (56%), Gaps = 12/432 (2%)
 Frame = +1

Query: 259  DPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIEAYNNPKVPEPT------DAAWN 420
            D +A   +    P   +Q ++GW+RSYY+ ++H+EA+  Y    +P             +
Sbjct: 39   DKFAERELIDLHPEYHRQFIQGWSRSYYNTERHMEALLNYGTRNIPVDNVDYNLYQGCID 98

Query: 421  TTKQHVIALFR--SFATVHSISYQHFDDVKWLAASAAGYGYTGRKG--DPGIYKQA-KRT 585
            T K  + +L R  +F  +  ++      V + +++AAGY Y G KG  D   +KQA +R 
Sbjct: 99   TVKNGLRSLPRVKAFDVLTELNL-----VSYKSSTAAGYNYMGAKGPFDGYNHKQAIRRA 153

Query: 586  AVTMAEKLQRDPHFGAQAINDSTPDLAFKRIQLSQVKVKSKIRNVWGEAFQYVLLEGLFA 765
              T+ +          +AI  + PD+ + R QL+ +  K+KIRNVWG AF Y+L+EG  A
Sbjct: 154  RATVGDVSDNGIEGLRRAITTAVPDVGYTRTQLTDLTEKTKIRNVWGRAFHYILIEGTSA 213

Query: 766  DPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYMFDWSGFDASVQDWELRNAFH 945
            DPLI  F + ++FY IG DPL SVP  + E      ++Y  DW  FDA+V  +E+  AF 
Sbjct: 214  DPLIRMFSKTKSFYHIGRDPLDSVPDVLSETAGKARWLYAIDWKQFDATVSRFEINAAFD 273

Query: 946  CLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLYVKTHGIPSGSCFTNIIGSIVNYV 1125
             +  ++ FP+   +  +    +LFI++KIA P G +Y    GIPSGS FT+IIGSI+N +
Sbjct: 274  IIMDLIEFPNYPTYVAFELSRQLFIHKKIAAPDGYIYWSHKGIPSGSYFTSIIGSIINRL 333

Query: 1126 RIQYMFQRLTNRF-AEVITHGDDSLAAVDSTQYVPLDRFSEIATPLGWKINLTKSAVSSA 1302
            RI+Y+++++T        T GDDSL+  D  ++ P ++F+EIA  +GW +N  K+  S+ 
Sbjct: 334  RIEYLWRKITGHGPLACYTQGDDSLSCDD--EFTPPEKFAEIANQIGWVLNPEKTEYSTI 391

Query: 1303 QEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGDVSALRAQSIMTDAGINSQYLYN 1482
              ++ FL RT+    N R+   CLR+L +PEY V SG +SA RA+SI  D G  S+ L  
Sbjct: 392  PSEVHFLGRTMLGGLNTREIKRCLRLLIYPEYPVDSGRISAYRAKSISEDVGRLSELLNK 451

Query: 1483 IYVYLRRKHGIA 1518
            I   L+ ++GIA
Sbjct: 452  IERRLQGQYGIA 463


>emb|CBZ05549.1| RNA-dependent RNA-polymerase [Fig cryptic virus]
          Length = 459

 Score =  268 bits (684), Expect = 7e-69
 Identities = 162/452 (35%), Positives = 242/452 (53%), Gaps = 12/452 (2%)
 Frame = +1

Query: 193  SGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIE 372
            +GL  +G I ER   +EF ++ D  A +++    P    QE +GWARS+Y  +  + +I 
Sbjct: 12   AGLIEIGNIPERHLRDEFIILVDQPAYDSVRRNAPQADMQEFDGWARSFYTVEGIMASIL 71

Query: 373  AYNNPKVPEPTDAAWNTTKQHVIALFRS-FATVHSI-SYQHFDDVKWLAASAAGYGYTGR 546
             ++   + EPTD  WN  K+  +    S F  V S+ S   FD V + ++S+AGYGY G+
Sbjct: 72   QFSKTLIHEPTDPIWNDVKRETLMKIGSLFPQVQSLPSEGGFDHVPFESSSSAGYGYDGK 131

Query: 547  KGDPGIYKQAKRTAVTMAEKLQRD------PHFGAQAINDSTPDLAFKRIQLSQVKVKSK 708
            KGD   + +AK  A     K   D       +  +  I   TPD+AF R QL+++    K
Sbjct: 132  KGDGNNFHRAKSIANAAVRKFSEDIDNQGYDYAVSHLIQQGTPDIAFTRTQLAKLP-SIK 190

Query: 709  IRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYM- 885
            +R V+GEA   +L+EGL A PL+  FKR  TFYF G  P     L  + L  D     M 
Sbjct: 191  VRIVFGEALHNILIEGLSAAPLLEAFKRMDTFYFTGTGPN---NLRSKNLTQDEHKRKMG 247

Query: 886  ---FDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLY 1056
                    FDASVQ WE+ +AF+C++Q+LA P+ +    + F  E F  RK+A P G L+
Sbjct: 248  LSALTGKAFDASVQLWEIDHAFNCIQQLLALPTELSRLAFLFTRESFKQRKLADPNGILW 307

Query: 1057 VKTHGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDR 1236
            ++  GIPSGS +TNIIGS++NY RI+Y+ +RL  +       GDDSL  +       L +
Sbjct: 308  MRKGGIPSGSYYTNIIGSVINYNRIEYVCKRLGLQKTSCYVQGDDSLIHITRDAKPDLTQ 367

Query: 1237 FSEIATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGD 1416
               +    GW +N+ K +++   + ++FL R+   Q   R+ L  LR++ FPEY V    
Sbjct: 368  LQMLGEQFGWTLNIPKCSLTQDSQLVTFLGRSQMHQLIIRERLKVLRLMCFPEYKVEDPK 427

Query: 1417 VSALRAQSIMTDAGINSQYLYNIYVYLRRKHG 1512
            +S  R ++I  DAG +      IY+ L+R +G
Sbjct: 428  ISTTRVKAIARDAGWSDPVYNKIYLQLKRLYG 459


>emb|CBZ05551.1| RNA-dependent RNA-polymerase [Fig cryptic virus]
          Length = 459

 Score =  267 bits (683), Expect = 9e-69
 Identities = 159/452 (35%), Positives = 245/452 (54%), Gaps = 12/452 (2%)
 Frame = +1

Query: 193  SGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIE 372
            +GL  +G I ER   +EF ++ D  A ++     P    QE++GWARS++  +  + ++ 
Sbjct: 12   AGLIEIGNIPERHLRDEFIILVDQPAYDSGRRNAPQADMQEIDGWARSFHTVEGIMASMM 71

Query: 373  AYNNPKVPEPTDAAWNTTKQHVIALFRS-FATVHSISYQH-FDDVKWLAASAAGYGYTGR 546
             ++ P + EPTD  WN  K+  +    S F  V S+ ++  FD V + ++S+AGYG+ G+
Sbjct: 72   QFSKPLIHEPTDPIWNDVKRETLMKIGSLFPQVQSLPFEGGFDHVPFESSSSAGYGFDGK 131

Query: 547  KGDPGIYKQAKRTAVTMAEKLQRD------PHFGAQAINDSTPDLAFKRIQLSQVKVKSK 708
            KG+   + +AK  A     K   D       +  +  I   TPD+AF R QL+++    K
Sbjct: 132  KGEGNNFHRAKSIANAAVRKFSEDIDNQGYDYAVSHLIQQGTPDIAFTRTQLAKLP-SIK 190

Query: 709  IRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYM- 885
            +R V+GEAF  +L++GL A PL+  FKR  TFYF G  P     L  + L  D     M 
Sbjct: 191  VRIVFGEAFHNILIDGLSAAPLLEAFKRMDTFYFTGQGPN---NLRSKNLTQDEHKRKMG 247

Query: 886  ---FDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLY 1056
                    FDASVQ WE+ +AF+C++Q+LAFP+ +    + F  E F  RK+A P G L+
Sbjct: 248  LSALTGKAFDASVQLWEIDHAFNCIQQLLAFPTELSRLAFLFTRESFKQRKLADPNGILW 307

Query: 1057 VKTHGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDR 1236
            ++  GIPSGS +TNIIGS++NY RI+Y+ +RL  +       GDDSL  +       L +
Sbjct: 308  MRKGGIPSGSYYTNIIGSVINYNRIEYVCKRLGLQKTSCYVQGDDSLIHITGDAKPDLTQ 367

Query: 1237 FSEIATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGD 1416
               +    GW +N+ K + +   + ++FL R+   Q   R+ L  LR++ FPEY V    
Sbjct: 368  LQMLGEQFGWTLNIPKCSRTQDSQLVTFLGRSQMHQLIIRERLKVLRLMCFPEYKVEDPK 427

Query: 1417 VSALRAQSIMTDAGINSQYLYNIYVYLRRKHG 1512
            +S  R ++I  DAG +      IY+ L+R +G
Sbjct: 428  ISTTRVKAIARDAGWSDPVYNKIYLQLKRLYG 459


>emb|CBZ05553.1| RNA-dependent RNA-polymerase [Fig cryptic virus]
          Length = 459

 Score =  261 bits (668), Expect = 5e-67
 Identities = 158/452 (34%), Positives = 241/452 (53%), Gaps = 12/452 (2%)
 Frame = +1

Query: 193  SGLTILGEISERRSDEEFKLIYDPYALEAIEFFVPGTLKQELEGWARSYYDRQKHIEAIE 372
            +GL  +G I ER   +EF ++ D  A +++         QE +GWARS+Y  +  + +I 
Sbjct: 12   AGLIEIGNIPERHLRDEFIILVDQPAYDSVRRNARQADMQEFDGWARSFYTVEGIMASIM 71

Query: 373  AYNNPKVPEPTDAAWNTTKQHVIALFRSFAT-VHSISYQH-FDDVKWLAASAAGYGYTGR 546
             ++ P + EPTD  WN  K+  +    S    V S+ ++  FD V + ++S+AGYGY G+
Sbjct: 72   QFSKPLIHEPTDPIWNDVKRETLMKIGSLCPQVQSLPFEGGFDHVPFESSSSAGYGYDGK 131

Query: 547  KGDPGIYKQAKRTAVTMAEKLQRD------PHFGAQAINDSTPDLAFKRIQLSQVKVKSK 708
            KG+   + +AK  A     K   D       +  +  I   TPD+A  R QL+++    K
Sbjct: 132  KGEGNNFDRAKSIANAAVRKFSEDIDNQGYDYAVSHLIQQGTPDIAPTRTQLAKLP-SIK 190

Query: 709  IRNVWGEAFQYVLLEGLFADPLIAFFKRERTFYFIGYDPLLSVPLTIRELLSDHDYVYM- 885
            +R V+GEAF  +L+E L A PL+  FKR  TFYF G  P     L  + L  D     M 
Sbjct: 191  VRIVFGEAFHNILIEPLSAAPLLEAFKRMDTFYFTGKGPN---NLRSKNLTQDEHKRKMG 247

Query: 886  ---FDWSGFDASVQDWELRNAFHCLEQMLAFPSNVEHQIWRFIIELFIYRKIAGPQGTLY 1056
                     DASVQ WE+ +AF+C++Q+LAFP+ +    + F  E F  RK+A P G L+
Sbjct: 248  LSALTGKALDASVQLWEIDHAFNCIQQLLAFPTELSRLAFLFTRESFKQRKLADPNGILW 307

Query: 1057 VKTHGIPSGSCFTNIIGSIVNYVRIQYMFQRLTNRFAEVITHGDDSLAAVDSTQYVPLDR 1236
            ++  GIPSGS +TNIIGS++NY RI+Y+ +RL  +       GDDSL  +       L +
Sbjct: 308  MRKGGIPSGSYYTNIIGSVINYNRIEYVCKRLGLQKTSCYVQGDDSLIHITGDAKPDLTQ 367

Query: 1237 FSEIATPLGWKINLTKSAVSSAQEQISFLSRTVRDQQNARDELICLRMLAFPEYHVPSGD 1416
               +    GW +N+ K +++   + ++FL R+   Q   R+ L  LR++ FPEY V    
Sbjct: 368  LQMLGEQFGWTLNIPKCSLTQDSQLVTFLGRSQMHQFYIRERLKVLRLMCFPEYKVEDPK 427

Query: 1417 VSALRAQSIMTDAGINSQYLYNIYVYLRRKHG 1512
            +S  R ++I  DAG +      IY+ L+R +G
Sbjct: 428  ISTTRVKAIARDAGWSDPVYNKIYLQLKRLYG 459