BLASTX nr result

ID: Acanthopanax24_contig00023579 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Acanthopanax24_contig00023579
         (412 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004222273.1| hypothetical protein BevumaM_p035 (mitochond...    51   5e-08

>ref|YP_004222273.1| hypothetical protein BevumaM_p035 (mitochondrion) [Beta vulgaris
           subsp. maritima]
 ref|YP_004842080.1| hypothetical protein BemaM_p033 (mitochondrion) [Beta macrocarpa]
 emb|CBX33239.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
           maritima]
 emb|CBX33291.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
           maritima]
 emb|CBJ23363.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
           maritima]
 emb|CBX24882.1| hypothetical protein (mitochondrion) [Beta macrocarpa]
 emb|CBL52049.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
           maritima]
          Length = 100

 Score = 50.8 bits (120), Expect(2) = 5e-08
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = -1

Query: 178 YCHQQFQHGQGLLNMDRTRVEL 113
           YCHQQ+QHGQGLLNMDRTRVEL
Sbjct: 27  YCHQQYQHGQGLLNMDRTRVEL 48



 Score = 33.9 bits (76), Expect(2) = 5e-08
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -2

Query: 231 DATLGNIDTSTFKHLVV 181
           DATLGNI+TST KHLVV
Sbjct: 8   DATLGNIETSTLKHLVV 24


Top