BLASTX nr result
ID: Acanthopanax24_contig00016734
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Acanthopanax24_contig00016734
(428 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004249138.1| PREDICTED: sm-like protein LSM36B [Solanum l... 78 3e-16
ref|XP_016543963.1| PREDICTED: sm-like protein LSM36B [Capsicum ... 78 3e-16
ref|XP_009603176.1| PREDICTED: sm-like protein LSM36B [Nicotiana... 78 3e-16
ref|XP_006362264.1| PREDICTED: sm-like protein LSM36B [Solanum t... 78 3e-16
gb|ABK26542.1| unknown [Picea sitchensis] 78 3e-16
gb|PON50568.1| LSM domain/archaea-type [Trema orientalis] 77 8e-16
ref|XP_015089276.1| PREDICTED: sm-like protein LSM36B [Solanum p... 77 1e-15
ref|XP_022887746.1| sm-like protein LSM36B [Olea europaea var. s... 77 1e-15
ref|XP_020687863.1| U6 snRNA-associated Sm-like protein LSm6 [De... 77 1e-15
ref|XP_020595748.1| U6 snRNA-associated Sm-like protein LSm6 [Ph... 77 1e-15
gb|ABK22473.1| unknown [Picea sitchensis] 77 1e-15
ref|XP_017699900.1| PREDICTED: sm-like protein LSM36B [Phoenix d... 76 1e-15
gb|KRH40503.1| hypothetical protein GLYMA_09G262700 [Glycine max] 76 2e-15
gb|PNX85066.1| U6 snRNA-associated Sm-like protein LSm6 [Trifoli... 76 2e-15
dbj|GAY66624.1| hypothetical protein CUMW_250260 [Citrus unshiu] 75 2e-15
ref|XP_020261096.1| U6 snRNA-associated Sm-like protein LSm6 [As... 76 3e-15
ref|XP_019703523.1| PREDICTED: U6 snRNA-associated Sm-like prote... 76 3e-15
gb|AFK41314.1| unknown [Lotus japonicus] 76 3e-15
gb|KZV32245.1| hypothetical protein F511_29424 [Dorcoceras hygro... 76 3e-15
ref|XP_004505465.1| PREDICTED: sm-like protein LSM36B [Cicer ari... 76 3e-15
>ref|XP_004249138.1| PREDICTED: sm-like protein LSM36B [Solanum lycopersicum]
Length = 90
Score = 78.2 bits (191), Expect = 3e-16
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA
Sbjct: 54 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 90
>ref|XP_016543963.1| PREDICTED: sm-like protein LSM36B [Capsicum annuum]
gb|PHT43459.1| U6 snRNA-associated Sm-like protein LSm6 [Capsicum baccatum]
gb|PHT63408.1| U6 snRNA-associated Sm-like protein LSm6 [Capsicum annuum]
gb|PHU06148.1| U6 snRNA-associated Sm-like protein LSm6 [Capsicum chinense]
Length = 91
Score = 78.2 bits (191), Expect = 3e-16
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA
Sbjct: 55 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 91
>ref|XP_009603176.1| PREDICTED: sm-like protein LSM36B [Nicotiana tomentosiformis]
ref|XP_009777209.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Nicotiana
sylvestris]
ref|XP_016471589.1| PREDICTED: sm-like protein LSM36B [Nicotiana tabacum]
ref|XP_016471590.1| PREDICTED: sm-like protein LSM36B [Nicotiana tabacum]
ref|XP_016435182.1| PREDICTED: sm-like protein LSM36B [Nicotiana tabacum]
ref|XP_016435183.1| PREDICTED: sm-like protein LSM36B [Nicotiana tabacum]
ref|XP_019254354.1| PREDICTED: sm-like protein LSM36B [Nicotiana attenuata]
ref|XP_019254355.1| PREDICTED: sm-like protein LSM36B [Nicotiana attenuata]
gb|OIS97670.1| sm-like protein lsm36b [Nicotiana attenuata]
Length = 91
Score = 78.2 bits (191), Expect = 3e-16
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA
Sbjct: 55 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 91
>ref|XP_006362264.1| PREDICTED: sm-like protein LSM36B [Solanum tuberosum]
Length = 91
Score = 78.2 bits (191), Expect = 3e-16
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA
Sbjct: 55 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 91
>gb|ABK26542.1| unknown [Picea sitchensis]
Length = 91
Score = 78.2 bits (191), Expect = 3e-16
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA
Sbjct: 55 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 91
>gb|PON50568.1| LSM domain/archaea-type [Trema orientalis]
Length = 98
Score = 77.4 bits (189), Expect = 8e-16
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA*HTRHLQDTSVHLASC 268
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+ +GA H ++ + SC
Sbjct: 30 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVADGAWHCHLIKAVKIIWFSC 82
>ref|XP_015089276.1| PREDICTED: sm-like protein LSM36B [Solanum pennellii]
Length = 90
Score = 77.0 bits (188), Expect = 1e-15
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSK+TLGEGA
Sbjct: 54 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKKTLGEGA 90
>ref|XP_022887746.1| sm-like protein LSM36B [Olea europaea var. sylvestris]
ref|XP_022887747.1| sm-like protein LSM36B [Olea europaea var. sylvestris]
Length = 91
Score = 77.0 bits (188), Expect = 1e-15
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYIST+KRTLGEGA
Sbjct: 55 TEEYVNGQLKNKYGDAFIRGNNVLYISTTKRTLGEGA 91
>ref|XP_020687863.1| U6 snRNA-associated Sm-like protein LSm6 [Dendrobium catenatum]
gb|PKU66349.1| putative small nuclear ribonucleoprotein F [Dendrobium catenatum]
Length = 97
Score = 77.0 bits (188), Expect = 1e-15
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+GEGA
Sbjct: 61 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVGEGA 97
>ref|XP_020595748.1| U6 snRNA-associated Sm-like protein LSm6 [Phalaenopsis equestris]
Length = 97
Score = 77.0 bits (188), Expect = 1e-15
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+GEGA
Sbjct: 61 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVGEGA 97
>gb|ABK22473.1| unknown [Picea sitchensis]
Length = 91
Score = 76.6 bits (187), Expect = 1e-15
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKR+LGEGA
Sbjct: 55 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRSLGEGA 91
>ref|XP_017699900.1| PREDICTED: sm-like protein LSM36B [Phoenix dactylifera]
Length = 67
Score = 75.9 bits (185), Expect = 1e-15
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL EGA
Sbjct: 31 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 67
>gb|KRH40503.1| hypothetical protein GLYMA_09G262700 [Glycine max]
Length = 70
Score = 75.9 bits (185), Expect = 2e-15
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL EGA
Sbjct: 34 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 70
>gb|PNX85066.1| U6 snRNA-associated Sm-like protein LSm6 [Trifolium pratense]
Length = 71
Score = 75.9 bits (185), Expect = 2e-15
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL EGA
Sbjct: 35 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 71
>dbj|GAY66624.1| hypothetical protein CUMW_250260 [Citrus unshiu]
Length = 44
Score = 74.7 bits (182), Expect = 2e-15
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL +GA
Sbjct: 8 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLADGA 44
>ref|XP_020261096.1| U6 snRNA-associated Sm-like protein LSm6 [Asparagus officinalis]
gb|ONK72022.1| uncharacterized protein A4U43_C04F14830 [Asparagus officinalis]
Length = 89
Score = 75.9 bits (185), Expect = 3e-15
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL EGA
Sbjct: 53 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 89
>ref|XP_019703523.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Elaeis
guineensis]
Length = 89
Score = 75.9 bits (185), Expect = 3e-15
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL EGA
Sbjct: 53 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 89
>gb|AFK41314.1| unknown [Lotus japonicus]
Length = 90
Score = 75.9 bits (185), Expect = 3e-15
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL EGA
Sbjct: 54 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 90
>gb|KZV32245.1| hypothetical protein F511_29424 [Dorcoceras hygrometricum]
Length = 90
Score = 75.9 bits (185), Expect = 3e-15
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL EGA
Sbjct: 54 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 90
>ref|XP_004505465.1| PREDICTED: sm-like protein LSM36B [Cicer arietinum]
ref|XP_004505466.1| PREDICTED: sm-like protein LSM36B [Cicer arietinum]
Length = 90
Score = 75.9 bits (185), Expect = 3e-15
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 426 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 316
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL EGA
Sbjct: 54 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 90