BLASTX nr result

ID: Acanthopanax24_contig00009152 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Acanthopanax24_contig00009152
         (446 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_023914410.1| 30S ribosomal protein S16-2, chloroplastic/m...    63   9e-10
gb|POF08222.1| 30s ribosomal protein s16-2, chloroplastic/mitoch...    63   3e-09
gb|KZN10865.1| hypothetical protein DCAR_003521 [Daucus carota s...    56   2e-07
ref|XP_017236564.1| PREDICTED: 30S ribosomal protein S16-like [D...    56   5e-07
ref|XP_018833650.1| PREDICTED: 30S ribosomal protein S16-2, chlo...    55   1e-06
gb|OUZ99227.1| Ribosomal protein S16 [Macleaya cordata]                54   2e-06
ref|XP_024179406.1| 30S ribosomal protein S16-2, chloroplastic/m...    55   2e-06
ref|XP_010536866.1| PREDICTED: 30S ribosomal protein S16-2, chlo...    53   7e-06
ref|XP_008781757.1| PREDICTED: 30S ribosomal protein S16-like [P...    53   8e-06

>ref|XP_023914410.1| 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Quercus
           suber]
          Length = 141

 Score = 63.2 bits (152), Expect = 9e-10
 Identities = 31/46 (67%), Positives = 37/46 (80%), Gaps = 5/46 (10%)
 Frame = -3

Query: 444 GPRDTRPIDPMTGRYLTSEKPADSDQPVESEGDEDG-----DATTS 322
           GPRDTRPIDPMTGR LT EKPA++DQ  +S+G+EDG     DA+TS
Sbjct: 96  GPRDTRPIDPMTGRILTPEKPANADQSNDSKGEEDGEDDDDDASTS 141


>gb|POF08222.1| 30s ribosomal protein s16-2, chloroplastic/mitochondrial [Quercus
           suber]
          Length = 184

 Score = 62.8 bits (151), Expect = 3e-09
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = -3

Query: 444 GPRDTRPIDPMTGRYLTSEKPADSDQPVESEGDEDGDA 331
           GPRDTRPIDPMTGR LT EKPA++DQ  +S+G+EDG A
Sbjct: 96  GPRDTRPIDPMTGRILTPEKPANADQSNDSKGEEDGGA 133


>gb|KZN10865.1| hypothetical protein DCAR_003521 [Daucus carota subsp. sativus]
          Length = 82

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = -3

Query: 444 GPRDTRPIDPMTGRYLTSEKPADSDQPVESEGDEDGDATT 325
           GPRDTRPIDPMTGRYLT+E P  SDQ    +G ED  AT+
Sbjct: 45  GPRDTRPIDPMTGRYLTAENPTKSDQ--SKDGGEDTAATS 82


>ref|XP_017236564.1| PREDICTED: 30S ribosomal protein S16-like [Daucus carota subsp.
           sativus]
          Length = 133

 Score = 55.8 bits (133), Expect = 5e-07
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = -3

Query: 444 GPRDTRPIDPMTGRYLTSEKPADSDQPVESEGDEDGDATT 325
           GPRDTRPIDPMTGRYLT+E P  SDQ    +G ED  AT+
Sbjct: 96  GPRDTRPIDPMTGRYLTAENPTKSDQ--SKDGGEDTAATS 133


>ref|XP_018833650.1| PREDICTED: 30S ribosomal protein S16-2, chloroplastic/mitochondrial
           [Juglans regia]
          Length = 136

 Score = 55.1 bits (131), Expect = 1e-06
 Identities = 24/41 (58%), Positives = 32/41 (78%)
 Frame = -3

Query: 444 GPRDTRPIDPMTGRYLTSEKPADSDQPVESEGDEDGDATTS 322
           GPRDTR +DPMTGR LT EKPA++DQP + + + +  A+TS
Sbjct: 96  GPRDTRHVDPMTGRILTLEKPANADQPKDQDKNSEDGASTS 136


>gb|OUZ99227.1| Ribosomal protein S16 [Macleaya cordata]
          Length = 134

 Score = 54.3 bits (129), Expect = 2e-06
 Identities = 21/35 (60%), Positives = 30/35 (85%)
 Frame = -3

Query: 444 GPRDTRPIDPMTGRYLTSEKPADSDQPVESEGDED 340
           GPRDTRP++P+TGR++T +KPA++DQP  S  DE+
Sbjct: 96  GPRDTRPVNPLTGRFVTPKKPANTDQPKSSNSDEN 130


>ref|XP_024179406.1| 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Rosa
           chinensis]
 gb|PRQ46869.1| putative ribosomal protein S16 [Rosa chinensis]
          Length = 162

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 23/41 (56%), Positives = 32/41 (78%)
 Frame = -3

Query: 444 GPRDTRPIDPMTGRYLTSEKPADSDQPVESEGDEDGDATTS 322
           GPRDTRP+DPMTGR LT EKPA +D+  ++E  E+ +A ++
Sbjct: 96  GPRDTRPVDPMTGRILTPEKPASADEAKDAENAEEKEAESA 136


>ref|XP_010536866.1| PREDICTED: 30S ribosomal protein S16-2, chloroplastic/mitochondrial
           [Tarenaya hassleriana]
          Length = 130

 Score = 52.8 bits (125), Expect = 7e-06
 Identities = 21/34 (61%), Positives = 28/34 (82%)
 Frame = -3

Query: 444 GPRDTRPIDPMTGRYLTSEKPADSDQPVESEGDE 343
           GPRDTRP+DPMTGR+L +++PA+  +P E E DE
Sbjct: 96  GPRDTRPVDPMTGRFLDTQQPANDTEPKEDEEDE 129


>ref|XP_008781757.1| PREDICTED: 30S ribosomal protein S16-like [Phoenix dactylifera]
          Length = 138

 Score = 52.8 bits (125), Expect = 8e-06
 Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
 Frame = -3

Query: 444 GPRDTRPIDPMTGRYLTSEKPADSDQPV--ESEGDEDGD 334
           GPRDTRP+DP++GRYLT E P  +DQ    ESE  EDGD
Sbjct: 96  GPRDTRPVDPLSGRYLTPESPETADQSECRESEVGEDGD 134


Top