BLASTX nr result
ID: Acanthopanax23_contig00019178
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Acanthopanax23_contig00019178
(457 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009414737.1| photosystem I assembly protein Ycf4 (chlorop... 74 2e-13
ref|YP_009383547.1| photosystem I assembly protein Ycf4 (chlorop... 70 6e-12
ref|YP_086977.1| photosystem I assembly protein Ycf4 [Panax gins... 66 2e-10
ref|YP_009347000.1| photosystem I assembly protein ycf4 (chlorop... 66 2e-10
ref|YP_009326529.1| photosystem I assembly protein ycf4 (chlorop... 66 2e-10
gb|ANS71780.1| Ycf4 (chloroplast) [Eleutherococcus sessiliflorus] 66 2e-10
ref|YP_009161690.1| photosystem I assembly protein ycf4 (chlorop... 66 2e-10
ref|YP_008815215.1| photosystem I assembly protein ycf4 (chlorop... 66 2e-10
ref|YP_008815041.1| photosystem I assembly protein ycf4 (chlorop... 66 2e-10
ref|YP_008814954.1| photosystem I assembly protein ycf4 (chlorop... 66 2e-10
ref|YP_008814867.1| photosystem I assembly protein ycf4 (chlorop... 66 2e-10
ref|YP_004935563.1| photosystem I assembly protein Ycf4 (chlorop... 66 2e-10
ref|YP_398340.1| photosystem I assembly protein Ycf4 [Lactuca sa... 65 4e-10
ref|YP_009370593.1| photosystem I assembly protein ycf4 (chlorop... 65 4e-10
ref|YP_009363799.1| photosystem I assembly protein Ycf4 (chlorop... 65 4e-10
ref|YP_009371646.1| photosystem I assembly protein Ycf4 (chlorop... 65 4e-10
ref|YP_009374436.1| photosystem I assembly protein Ycf4 (chlorop... 65 4e-10
ref|YP_009373587.1| photosystem I assembly protein Ycf4 (chlorop... 65 4e-10
gb|ANS58005.1| Ycf4 (chloroplast) [Ligularia fischeri] 65 4e-10
ref|YP_009320290.1| photosystem I assembly protein ycf4 (chlorop... 65 4e-10
>ref|YP_009414737.1| photosystem I assembly protein Ycf4 (chloroplast) [Platycodon
grandiflorus]
gb|ARR27742.1| photosystem I assembly protein Ycf4 (chloroplast) [Platycodon
grandiflorus]
Length = 213
Score = 74.3 bits (181), Expect = 2e-13
Identities = 42/68 (61%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Frame = -1
Query: 196 KRVKS---GVFS*FQ*NETGSSMSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXX 26
KR+KS GVFS F+ N TG SMS RSEHIWIE ITGSRKTSNFCW VI
Sbjct: 8 KRLKSNSFGVFSQFEENATGLSMSWRSEHIWIETITGSRKTSNFCWTVILFLGSLGFLLV 67
Query: 25 XXXSYLGR 2
SYLGR
Sbjct: 68 GTSSYLGR 75
>ref|YP_009383547.1| photosystem I assembly protein Ycf4 (chloroplast) [Aster altaicus]
gb|ARR27844.1| photosystem I assembly protein Ycf4 (chloroplast) [Aster altaicus]
Length = 210
Score = 70.5 bits (171), Expect = 6e-12
Identities = 34/50 (68%), Positives = 35/50 (70%)
Frame = -1
Query: 151 TGSSMSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
TGSSMSCRSEHIWIEPITG+RKTSNFCWA I SYLGR
Sbjct: 23 TGSSMSCRSEHIWIEPITGARKTSNFCWAFILFLGSLGFLLVGTSSYLGR 72
>ref|YP_086977.1| photosystem I assembly protein Ycf4 [Panax ginseng]
ref|YP_009121184.1| photosystem I assembly protein ycf4 (chloroplast) [Panax
notoginseng]
ref|YP_009155439.1| Ycf4 (chloroplast) [Panax quinquefolius]
ref|YP_009191864.1| photosystem I assembly protein ycf4 (chloroplast) [Panax japonicus]
ref|YP_009191951.1| photosystem I assembly protein ycf4 (chloroplast) [Panax
vietnamensis]
sp|Q68RZ5.1|YCF4_PANGI RecName: Full=Photosystem I assembly protein Ycf4
gb|AAT98520.1| yc4 protein (chloroplast) [Panax ginseng]
gb|AGM15037.1| photosystem I assembly protein Ycf4 (chloroplast) [Panax ginseng]
gb|AGM15123.1| photosystem I assembly protein Ycf4 (chloroplast) [Panax ginseng]
gb|AGM15209.1| photosystem I assembly protein Ycf4 (chloroplast) [Panax ginseng]
gb|AGW31969.1| photosystem I assembly protein Ycf4 (chloroplast) [Panax ginseng]
gb|AIA24338.1| photosystem I assembly protein ycf4 (chloroplast) [Panax
notoginseng]
gb|AIX97900.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AIX97987.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AIX98070.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AIX98155.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AIX98240.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AIX98325.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AIX98410.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AIX98495.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AIX98580.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AJC99499.1| Ycf4 (chloroplast) [Panax quinquefolius]
gb|AJC99584.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AJC99669.1| Ycf4 (chloroplast) [Panax ginseng]
gb|AKB99083.1| photosystem I assembly protein ycf4 (chloroplast) [Panax
notoginseng]
gb|AKB99170.1| photosystem I assembly protein ycf4 (chloroplast) [Panax japonicus]
gb|AKB99257.1| photosystem I assembly protein ycf4 (chloroplast) [Panax
vietnamensis]
gb|AKB99344.1| photosystem I assembly protein ycf4 (chloroplast) [Panax
vietnamensis]
gb|AKG26611.1| photosystem I assembly protein Ycf4 (chloroplast) [Panax
notoginseng]
gb|AKU70786.1| photosystem I assembly protein ycf4 (chloroplast) [Panax
notoginseng]
gb|AKZ29757.1| photosystem I assembly protein ycf4 (chloroplast) [Panax
quinquefolius]
gb|AMR97460.1| Ycf4 (chloroplast) [Panax vietnamensis]
gb|ATJ26138.1| photosystem I assembly protein ycf4 (chloroplast) [Panax sp.
VM-2017]
gb|ATJ26322.1| photosystem I assembly protein ycf4 (chloroplast) [Panax
vietnamensis]
Length = 184
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/46 (69%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_009347000.1| photosystem I assembly protein ycf4 (chloroplast) [Sambucus
williamsii]
gb|APU51464.1| photosystem I assembly protein ycf4 (chloroplast) [Sambucus
williamsii]
Length = 184
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/46 (69%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_009326529.1| photosystem I assembly protein ycf4 (chloroplast) [Sinadoxa
corydalifolia]
gb|APD52579.1| photosystem I assembly protein ycf4 (chloroplast) [Sinadoxa
corydalifolia]
Length = 184
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/46 (69%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>gb|ANS71780.1| Ycf4 (chloroplast) [Eleutherococcus sessiliflorus]
Length = 184
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/46 (69%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_009161690.1| photosystem I assembly protein ycf4 (chloroplast) [Fatsia japonica]
gb|AKS10964.1| photosystem I assembly protein ycf4 (chloroplast) [Fatsia japonica]
Length = 184
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/46 (69%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_008815215.1| photosystem I assembly protein ycf4 (chloroplast) [Kalopanax
septemlobus]
gb|AGG39315.1| photosystem I assembly protein ycf4 (chloroplast) [Kalopanax
septemlobus]
Length = 184
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/46 (69%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_008815041.1| photosystem I assembly protein ycf4 (chloroplast) [Metapanax
delavayi]
gb|AGG39141.1| photosystem I assembly protein ycf4 (chloroplast) [Metapanax
delavayi]
Length = 184
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/46 (69%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_008814954.1| photosystem I assembly protein ycf4 (chloroplast) [Brassaiopsis
hainla]
gb|AGG39054.1| photosystem I assembly protein ycf4 (chloroplast) [Brassaiopsis
hainla]
Length = 184
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/46 (69%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_008814867.1| photosystem I assembly protein ycf4 (chloroplast) [Aralia undulata]
ref|YP_009266529.1| Ycf4 (chloroplast) [Panax stipuleanatus]
gb|AGG38967.1| photosystem I assembly protein ycf4 (chloroplast) [Aralia undulata]
gb|ANK78341.1| Ycf4 (chloroplast) [Panax japonicus var. bipinnatifidus]
gb|ANK78427.1| Ycf4 (chloroplast) [Panax stipuleanatus]
gb|ANS71954.1| Ycf4 (chloroplast) [Aralia elata]
gb|ATI20872.1| Ycf4 (chloroplast) [Panax stipuleanatus]
gb|ATJ26065.1| Ycf4 (chloroplast) [Panax japonicus var. bipinnatifidus]
gb|ATJ26237.1| Ycf4 (chloroplast) [Panax stipuleanatus]
Length = 184
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/46 (69%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_004935563.1| photosystem I assembly protein Ycf4 (chloroplast) [Eleutherococcus
senticosus]
ref|YP_008815128.1| photosystem I assembly protein ycf4 (chloroplast) [Schefflera
delavayi]
ref|YP_009122736.1| photosystem I assembly protein Ycf4 (chloroplast) [Dendropanax
dentiger]
ref|YP_009159549.1| Ycf4 (chloroplast) [Dendropanax morbifer]
gb|AEO92630.1| photosystem I assembly protein Ycf4 (chloroplast) [Eleutherococcus
senticosus]
gb|AGG39228.1| photosystem I assembly protein ycf4 (chloroplast) [Schefflera
delavayi]
gb|AJK29883.1| photosystem I assembly protein Ycf4 (chloroplast) [Dendropanax
dentiger]
gb|AKQ20739.1| Ycf4 (chloroplast) [Dendropanax morbifer]
gb|ANS71867.1| Ycf4 (chloroplast) [Eleutherococcus gracilistylus]
gb|ARJ61712.1| photosystem I assembly protein Ycf4 (plastid) [Eleutherococcus
senticosus]
Length = 184
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/46 (69%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_398340.1| photosystem I assembly protein Ycf4 [Lactuca sativa]
sp|Q332W7.1|YCF4_LACSA RecName: Full=Photosystem I assembly protein Ycf4
dbj|BAE47605.1| photosystem I assembly protein ycf4 (chloroplast) [Lactuca sativa]
gb|ABD47244.1| photosystem I assembly protein ycf4 (chloroplast) [Lactuca sativa]
Length = 184
Score = 65.1 bits (157), Expect = 4e-10
Identities = 31/46 (67%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITG+RKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGARKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_009370593.1| photosystem I assembly protein ycf4 (chloroplast) [Adoxa
moschatellina]
ref|YP_009370674.1| photosystem I assembly protein ycf4 (chloroplast) [Tetradoxa
omeiensis]
gb|API68296.1| photosystem I assembly protein ycf4 (chloroplast) [Adoxa
moschatellina]
gb|API68376.1| photosystem I assembly protein ycf4 (chloroplast) [Tetradoxa
omeiensis]
Length = 184
Score = 65.1 bits (157), Expect = 4e-10
Identities = 31/46 (67%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
M+CRSEHIWIEPITGSRKTSNFCWAVI SYLGR
Sbjct: 1 MNCRSEHIWIEPITGSRKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_009363799.1| photosystem I assembly protein Ycf4 (chloroplast) [Anaphalis
sinica]
gb|AOX48667.1| photosystem I assembly protein Ycf4 (chloroplast) [Anaphalis
sinica]
Length = 184
Score = 65.1 bits (157), Expect = 4e-10
Identities = 31/46 (67%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITG+RKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGARKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_009371646.1| photosystem I assembly protein Ycf4 (chloroplast) [Diplostephium
juniperinum]
ref|YP_009377071.1| photosystem I assembly protein Ycf4 (chloroplast) [Westoniella
kohkemperi]
ref|YP_009377241.1| photosystem I assembly protein Ycf4 (chloroplast) [Diplostephium
empetrifolium]
gb|ARH05171.1| photosystem I assembly protein Ycf4 (chloroplast) [Diplostephium
juniperinum]
gb|ARH08401.1| photosystem I assembly protein Ycf4 (chloroplast) [Westoniella
kohkemperi]
gb|ARH08741.1| photosystem I assembly protein Ycf4 (chloroplast) [Diplostephium
empetrifolium]
Length = 184
Score = 65.1 bits (157), Expect = 4e-10
Identities = 31/46 (67%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITG+RKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGARKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_009374436.1| photosystem I assembly protein Ycf4 (chloroplast) [Laestadia
muscicola]
gb|ARH04321.1| photosystem I assembly protein Ycf4 (chloroplast) [Laestadia
muscicola]
Length = 184
Score = 65.1 bits (157), Expect = 4e-10
Identities = 31/46 (67%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITG+RKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGARKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_009373587.1| photosystem I assembly protein Ycf4 (chloroplast) [Archibaccharis
asperifolia]
gb|ARH03132.1| photosystem I assembly protein Ycf4 (chloroplast) [Archibaccharis
asperifolia]
Length = 184
Score = 65.1 bits (157), Expect = 4e-10
Identities = 31/46 (67%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITG+RKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGARKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>gb|ANS58005.1| Ycf4 (chloroplast) [Ligularia fischeri]
Length = 184
Score = 65.1 bits (157), Expect = 4e-10
Identities = 31/46 (67%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITG+RKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGARKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46
>ref|YP_009320290.1| photosystem I assembly protein ycf4 (chloroplast) [Pericallis
hybrida]
ref|YP_009458045.1| Ycf4 (chloroplast) [Dendrosenecio keniodendron]
ref|YP_009458134.1| Ycf4 (chloroplast) [Dendrosenecio keniensis]
ref|YP_009458222.1| Ycf4 (chloroplast) [Dendrosenecio battiscombei]
gb|ALE65938.1| photosystem I assembly protein ycf4 (chloroplast) [Pericallis
hybrida]
gb|AMX21794.1| ycf4 (mitochondrion) [Dendrosenecio brassiciformis]
gb|ATL57850.1| Ycf4 (chloroplast) [Dendrosenecio keniodendron]
gb|ATL57939.1| Ycf4 (chloroplast) [Dendrosenecio keniensis]
gb|ATL58028.1| Ycf4 (chloroplast) [Dendrosenecio battiscombei]
Length = 184
Score = 65.1 bits (157), Expect = 4e-10
Identities = 31/46 (67%), Positives = 32/46 (69%)
Frame = -1
Query: 139 MSCRSEHIWIEPITGSRKTSNFCWAVIXXXXXXXXXXXXXXSYLGR 2
MSCRSEHIWIEPITG+RKTSNFCWAVI SYLGR
Sbjct: 1 MSCRSEHIWIEPITGARKTSNFCWAVILFLGSLGFLLVGTSSYLGR 46