BLASTX nr result

ID: Acanthopanax23_contig00019170 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Acanthopanax23_contig00019170
         (639 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KZM84696.1| hypothetical protein DCAR_027882 [Daucus carota s...    62   9e-09
ref|XP_017220379.1| PREDICTED: probable mediator of RNA polymera...    62   3e-08

>gb|KZM84696.1| hypothetical protein DCAR_027882 [Daucus carota subsp. sativus]
          Length = 149

 Score = 62.4 bits (150), Expect = 9e-09
 Identities = 36/64 (56%), Positives = 43/64 (67%)
 Frame = +2

Query: 83  SSSKKYEEKVSNGHHDFGPENLQKLQEKKWKFEGSDDLSSIQRRQKTELKNLKINYTGTL 262
           S+++K +EK    H D    NLQKLQ+KK KFEG  D+SSIQR +KTEL NLK     T 
Sbjct: 88  SANRKDDEKTRKSHRDINTNNLQKLQDKKRKFEGV-DISSIQRGRKTELDNLKAKIVDT- 145

Query: 263 RIAR 274
           RIAR
Sbjct: 146 RIAR 149


>ref|XP_017220379.1| PREDICTED: probable mediator of RNA polymerase II transcription
           subunit 19b [Daucus carota subsp. sativus]
          Length = 212

 Score = 62.4 bits (150), Expect = 3e-08
 Identities = 36/64 (56%), Positives = 43/64 (67%)
 Frame = +2

Query: 83  SSSKKYEEKVSNGHHDFGPENLQKLQEKKWKFEGSDDLSSIQRRQKTELKNLKINYTGTL 262
           S+++K +EK    H D    NLQKLQ+KK KFEG  D+SSIQR +KTEL NLK     T 
Sbjct: 151 SANRKDDEKTRKSHRDINTNNLQKLQDKKRKFEGV-DISSIQRGRKTELDNLKAKIVDT- 208

Query: 263 RIAR 274
           RIAR
Sbjct: 209 RIAR 212


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