BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Acanthopanax23_contig00002391
         (6555 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03355.5|POL_MLVMS RecName: Full=Gag-Pol polyprotein; Short=P...  1342   0.0  
gb|AAC82568.2| Pr180 [Moloney murine leukemia virus]                 1342   0.0  
ref|NP_057933.2| Pr180 [Moloney murine leukemia virus]               1342   0.0  
prf||0711245A protein gag/pol/env                                    1339   0.0  
ref|NP_955591.1| p80 RT [Moloney murine leukemia virus]              1329   0.0  
gb|AAL69910.1|AF462057_3 Pr180 gag-pro-pol polyprotein [Moloney ...  1329   0.0  
gb|AAB64160.1| Pol, partial (plasmid) [synthetic construct]          1320   0.0  
gb|AAB86912.1| Pol, partial [Rauscher murine leukemia virus]         1312   0.0  
ref|WP_038094790.1| hypothetical protein [Tumebacillus flagellat...  1310   0.0  
gb|ABU54793.1| gag-pro-pol polyprotein [Murine leukemia virus]       1309   0.0  
gb|ABU54795.1| gag-pro-pol polyprotein [Murine leukemia virus] >...  1309   0.0  
gb|ABU54794.1| gag-pro-pol polyprotein [Murine leukemia virus]       1309   0.0  
sp|P26809.2|POL_MLVFF RecName: Full=Gag-Pol polyprotein; Contain...  1308   0.0  
ref|NP_040333.1| RNA-dependent DNA polymerase, partial [Friend m...  1308   0.0  
sp|P08361.2|POL_MLVCB RecName: Full=Gag-Pol polyprotein; Short=P...  1308   0.0  
gb|AAO61197.1|AF411814_3 Gag-Pro-Pol polyprotein [Amphotropic mu...  1306   0.0  
dbj|BAX25197.1| POL precursor polyprotein, partial [Friend murin...  1305   0.0  
gb|AAC98548.1| pol polypeptide, partial [Murine leukemia virus]      1305   0.0  
sp|P26808.2|POL_MLVFP RecName: Full=Gag-Pol polyprotein; Contain...  1303   0.0  
gb|AAA46477.1| pol protein, partial [Friend murine leukemia virus]   1303   0.0  

>sp|P03355.5|POL_MLVMS RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains:
            RecName: Full=Matrix protein p15; Short=MA; Contains:
            RecName: Full=RNA-binding phosphoprotein p12; AltName:
            Full=pp12; Contains: RecName: Full=Capsid protein p30;
            Short=CA; Contains: RecName: Full=Nucleocapsid protein
            p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease;
            Short=PR; AltName: Full=p14; Contains: RecName:
            Full=Reverse transcriptase/ribonuclease H; Short=RT;
            AltName: Full=p80; Contains: RecName: Full=Integrase;
            Short=IN; AltName: Full=p46
          Length = 1738

 Score = 1342 bits (3472), Expect = 0.0
 Identities = 660/678 (97%), Positives = 664/678 (97%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 659  LTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 718

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 719  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 778

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 779  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 838

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 839  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 898

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 899  TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 958

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL
Sbjct: 959  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 1018

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1019 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1078

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 1079 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 1138

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYT GSSLLQEGQRKAGAA
Sbjct: 1139 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAA 1198

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1199 VTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1258

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA
Sbjct: 1259 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 1318

Query: 4286 AITENPDTSTLLIENSSP 4233
            AITE PDTSTLLIENSSP
Sbjct: 1319 AITETPDTSTLLIENSSP 1336


>gb|AAC82568.2| Pr180 [Moloney murine leukemia virus]
          Length = 1738

 Score = 1342 bits (3472), Expect = 0.0
 Identities = 660/678 (97%), Positives = 664/678 (97%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 659  LTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 718

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 719  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 778

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 779  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 838

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 839  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 898

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 899  TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 958

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL
Sbjct: 959  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 1018

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1019 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1078

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 1079 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 1138

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYT GSSLLQEGQRKAGAA
Sbjct: 1139 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAA 1198

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1199 VTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1258

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA
Sbjct: 1259 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 1318

Query: 4286 AITENPDTSTLLIENSSP 4233
            AITE PDTSTLLIENSSP
Sbjct: 1319 AITETPDTSTLLIENSSP 1336


>ref|NP_057933.2| Pr180 [Moloney murine leukemia virus]
          Length = 1737

 Score = 1342 bits (3472), Expect = 0.0
 Identities = 660/678 (97%), Positives = 664/678 (97%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 658  LTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 717

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 718  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 777

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 778  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 837

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 838  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 897

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 898  TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 957

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL
Sbjct: 958  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 1017

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1018 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1077

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 1078 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 1137

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYT GSSLLQEGQRKAGAA
Sbjct: 1138 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAA 1197

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1198 VTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1257

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA
Sbjct: 1258 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 1317

Query: 4286 AITENPDTSTLLIENSSP 4233
            AITE PDTSTLLIENSSP
Sbjct: 1318 AITETPDTSTLLIENSSP 1335


>prf||0711245A protein gag/pol/env
          Length = 2514

 Score = 1339 bits (3466), Expect = 0.0
 Identities = 659/678 (97%), Positives = 663/678 (97%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 769  LTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 828

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 829  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 888

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 889  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 948

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 949  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 1008

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 1009 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 1068

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAP YPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL
Sbjct: 1069 LREFLGTAGFCRLWIPGFAEMAAPKYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 1128

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1129 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1188

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 1189 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 1248

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYT GSSLLQEGQRKAGAA
Sbjct: 1249 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAA 1308

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1309 VTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1368

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA
Sbjct: 1369 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 1428

Query: 4286 AITENPDTSTLLIENSSP 4233
            AITE PDTSTLLIENSSP
Sbjct: 1429 AITETPDTSTLLIENSSP 1446


>ref|NP_955591.1| p80 RT [Moloney murine leukemia virus]
          Length = 671

 Score = 1329 bits (3439), Expect = 0.0
 Identities = 654/671 (97%), Positives = 657/671 (97%)
 Frame = -2

Query: 6260 LNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSI 6081
            LNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSI
Sbjct: 1    LNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSI 60

Query: 6080 KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKR 5901
            KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKR
Sbjct: 61   KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKR 120

Query: 5900 VEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISG 5721
            VEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISG
Sbjct: 121  VEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISG 180

Query: 5720 QLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQGTR 5541
            QLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQGTR
Sbjct: 181  QLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTR 240

Query: 5540 ALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLR 5361
            ALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLR
Sbjct: 241  ALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLR 300

Query: 5360 EFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPD 5181
            EFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPD
Sbjct: 301  EFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPD 360

Query: 5180 LTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTK 5001
            LTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTK
Sbjct: 361  LTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTK 420

Query: 5000 DAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALNPA 4821
            DAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALNPA
Sbjct: 421  DAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALNPA 480

Query: 4820 TLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAAVT 4641
            TLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYT GSSLLQEGQRKAGAAVT
Sbjct: 481  TLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAAVT 540

Query: 4640 TETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYRRR 4461
            TETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYRRR
Sbjct: 541  TETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRR 600

Query: 4460 GLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKAAI 4281
            GLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKAAI
Sbjct: 601  GLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKAAI 660

Query: 4280 TENPDTSTLLI 4248
            TE PDTSTLLI
Sbjct: 661  TETPDTSTLLI 671


>gb|AAL69910.1|AF462057_3 Pr180 gag-pro-pol polyprotein [Moloney murine leukemia virus]
          Length = 1738

 Score = 1329 bits (3439), Expect = 0.0
 Identities = 654/678 (96%), Positives = 661/678 (97%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 659  LTLNIEDEYRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 718

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 719  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 778

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 779  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 838

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 839  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 898

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 899  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 958

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF+WGPDQQKAYQEIKQALLTAPALGL
Sbjct: 959  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFDWGPDQQKAYQEIKQALLTAPALGL 1018

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1019 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1078

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 1079 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 1138

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 1139 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 1198

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1199 VTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1258

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNK EILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA
Sbjct: 1259 RRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 1318

Query: 4286 AITENPDTSTLLIENSSP 4233
            AITE PDTSTLLIE SSP
Sbjct: 1319 AITETPDTSTLLIEKSSP 1336


>gb|AAB64160.1| Pol, partial (plasmid) [synthetic construct]
          Length = 1199

 Score = 1320 bits (3416), Expect = 0.0
 Identities = 649/678 (95%), Positives = 658/678 (97%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 120  LTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 179

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 180  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 239

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 240  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 299

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 300  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 359

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 360  TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 419

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL
Sbjct: 420  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 479

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 480  PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 539

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 540  TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 599

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTR DLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 600  PATLLPLPEEGLQHDCLDILAEAHGTRSDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 659

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWA+ALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 660  VTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 719

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKG+SAEARGNRMADQAAR+ 
Sbjct: 720  RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREV 779

Query: 4286 AITENPDTSTLLIENSSP 4233
            A  E P TSTLLIENS+P
Sbjct: 780  ATRETPGTSTLLIENSTP 797


>gb|AAB86912.1| Pol, partial [Rauscher murine leukemia virus]
          Length = 1204

 Score = 1312 bits (3396), Expect = 0.0
 Identities = 644/681 (94%), Positives = 659/681 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 125  LTLNIEDEYRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 184

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYP+SQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGT+DYRPVQDLREVN
Sbjct: 185  SIKQYPISQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTHDYRPVQDLREVN 244

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQ LFAFEWRDPEMGI
Sbjct: 245  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQSLFAFEWRDPEMGI 304

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 305  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 364

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 365  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 424

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL
Sbjct: 425  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 484

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 485  PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 544

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGP+V LN
Sbjct: 545  TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPIVTLN 604

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTRPDLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 605  PATLLPLPEEGLQHDCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 664

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 665  VTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 724

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKG+ AEARGNRMADQAAR+ 
Sbjct: 725  RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNRAEARGNRMADQAAREV 784

Query: 4286 AITENPDTSTLLIENSSPNSR 4224
            A  E P+TSTLLIENS+P +R
Sbjct: 785  ATRETPETSTLLIENSTPYTR 805


>ref|WP_038094790.1| hypothetical protein [Tumebacillus flagellatus]
 gb|KEO80823.1| hypothetical protein EL26_24220 [Tumebacillus flagellatus]
          Length = 685

 Score = 1310 bits (3389), Expect = 0.0
 Identities = 646/676 (95%), Positives = 652/676 (96%)
 Frame = -2

Query: 6302 HRKQR*ILRRYHMTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAP 6123
            H     + R  HMTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAP
Sbjct: 9    HHSSGLVPRGSHMTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAP 68

Query: 6122 LIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTN 5943
            LIIPLKATSTPVSIKQYPMSQ+ARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTN
Sbjct: 69   LIIPLKATSTPVSIKQYPMSQKARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTN 128

Query: 5942 DYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPL 5763
            DYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPL
Sbjct: 129  DYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPL 188

Query: 5762 FAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXX 5583
            FAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            
Sbjct: 189  FAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLL 248

Query: 5582 LAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKET 5403
            LAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKET
Sbjct: 249  LAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKET 308

Query: 5402 VMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEI 5223
            VMGQPTPKTPRQLR FLGTAGFCRL+IPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEI
Sbjct: 309  VMGQPTPKTPRQLRRFLGTAGFCRLFIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEI 368

Query: 5222 KQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWP 5043
            KQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWP
Sbjct: 369  KQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWP 428

Query: 5042 PCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDT 4863
            PCLRMVAAIAVLTKDAGKLTMGQPLVI APHAVEALVKQPPDRWLS ARMTHYQALLLDT
Sbjct: 429  PCLRMVAAIAVLTKDAGKLTMGQPLVIGAPHAVEALVKQPPDRWLSKARMTHYQALLLDT 488

Query: 4862 DRVQFGPVVALNPATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSS 4683
            DRVQFGPVVALNPATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYT GSS
Sbjct: 489  DRVQFGPVVALNPATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTNGSS 548

Query: 4682 LLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYA 4503
            LLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYA
Sbjct: 549  LLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYA 608

Query: 4502 FATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEAR 4323
            FATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEAR
Sbjct: 609  FATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEAR 668

Query: 4322 GNRMADQAARKAAITE 4275
            GNRMADQAARKAAITE
Sbjct: 669  GNRMADQAARKAAITE 684


>gb|ABU54793.1| gag-pro-pol polyprotein [Murine leukemia virus]
          Length = 1736

 Score = 1309 bits (3388), Expect = 0.0
 Identities = 644/678 (94%), Positives = 656/678 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 657  LTLNIEDEYRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 716

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 717  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 776

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 777  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 836

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLA FRIQHP            LAATSELDCQQG
Sbjct: 837  SGQLTWTRLPQGFKNSPTLFDEALHRDLAGFRIQHPDLILLQYVDDLLLAATSELDCQQG 896

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQP PKTPRQ
Sbjct: 897  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPIPKTPRQ 956

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKA+QEIKQALLTAPALGL
Sbjct: 957  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAFQEIKQALLTAPALGL 1016

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1017 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1076

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 1077 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 1136

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTR DLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 1137 PATLLPLPEEGLQHDCLDILAEAHGTRSDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 1196

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWA+ALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1197 VTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1256

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKG+SAEARGNRMADQAAR+ 
Sbjct: 1257 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREV 1316

Query: 4286 AITENPDTSTLLIENSSP 4233
            A  E P TSTLLIENS+P
Sbjct: 1317 ATRETPGTSTLLIENSTP 1334


>gb|ABU54795.1| gag-pro-pol polyprotein [Murine leukemia virus]
 gb|ABU54796.1| gag-pro-pol polyprotein [Murine leukemia virus]
 gb|ABU54797.1| gag-pro-pol polyprotein [Murine leukemia virus]
          Length = 1736

 Score = 1309 bits (3388), Expect = 0.0
 Identities = 644/678 (94%), Positives = 656/678 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 657  LTLNIEDEYRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 716

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 717  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 776

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 777  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 836

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLA FRIQHP            LAATSELDCQQG
Sbjct: 837  SGQLTWTRLPQGFKNSPTLFDEALHRDLAGFRIQHPDLILLQYVDDLLLAATSELDCQQG 896

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQP PKTPRQ
Sbjct: 897  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPIPKTPRQ 956

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKA+QEIKQALLTAPALGL
Sbjct: 957  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAFQEIKQALLTAPALGL 1016

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1017 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1076

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 1077 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 1136

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTR DLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 1137 PATLLPLPEEGLQHDCLDILAEAHGTRSDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 1196

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWA+ALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1197 VTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1256

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKG+SAEARGNRMADQAAR+ 
Sbjct: 1257 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREV 1316

Query: 4286 AITENPDTSTLLIENSSP 4233
            A  E P TSTLLIENS+P
Sbjct: 1317 ATRETPGTSTLLIENSTP 1334


>gb|ABU54794.1| gag-pro-pol polyprotein [Murine leukemia virus]
          Length = 1736

 Score = 1309 bits (3388), Expect = 0.0
 Identities = 644/678 (94%), Positives = 656/678 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 657  LTLNIEDEYRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 716

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 717  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 776

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 777  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 836

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLA FRIQHP            LAATSELDCQQG
Sbjct: 837  SGQLTWTRLPQGFKNSPTLFDEALHRDLAGFRIQHPDLILLQYVDDLLLAATSELDCQQG 896

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQP PKTPRQ
Sbjct: 897  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPIPKTPRQ 956

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKA+QEIKQALLTAPALGL
Sbjct: 957  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAFQEIKQALLTAPALGL 1016

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1017 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1076

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 1077 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 1136

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTR DLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 1137 PATLLPLPEEGLQHDCLDILAEAHGTRSDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 1196

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWA+ALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1197 VTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1256

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKG+SAEARGNRMADQAAR+ 
Sbjct: 1257 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREV 1316

Query: 4286 AITENPDTSTLLIENSSP 4233
            A  E P TSTLLIENS+P
Sbjct: 1317 ATRETPGTSTLLIENSTP 1334


>sp|P26809.2|POL_MLVFF RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix
            protein p15; Contains: RecName: Full=RNA-binding
            phosphoprotein p12; AltName: Full=pp12; Contains:
            RecName: Full=Capsid protein p30; Contains: RecName:
            Full=Nucleocapsid protein p10-Pol; Short=NC-pol;
            Contains: RecName: Full=Protease; Contains: RecName:
            Full=Reverse transcriptase/ribonuclease H; Short=RT;
            Contains: RecName: Full=Integrase; Short=IN
          Length = 1738

 Score = 1308 bits (3386), Expect = 0.0
 Identities = 642/678 (94%), Positives = 655/678 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSK PDV LGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 659  LTLNIEDEYRLHETSKGPDVPLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 718

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 719  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 778

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQ LFAFEWRDPEMGI
Sbjct: 779  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQSLFAFEWRDPEMGI 838

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 839  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 898

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 899  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 958

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF WGPDQQKAYQEIKQALLTAPALGL
Sbjct: 959  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFEWGPDQQKAYQEIKQALLTAPALGL 1018

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1019 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1078

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGP+VALN
Sbjct: 1079 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPIVALN 1138

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTRPDLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 1139 PATLLPLPEEGLQHDCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 1198

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEV+WAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1199 VTTETEVVWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1258

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKG+ AEARGNRMADQAAR+ 
Sbjct: 1259 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNRAEARGNRMADQAAREV 1318

Query: 4286 AITENPDTSTLLIENSSP 4233
            A  E P+TSTLLIENS+P
Sbjct: 1319 ATRETPETSTLLIENSAP 1336


>ref|NP_040333.1| RNA-dependent DNA polymerase, partial [Friend murine leukemia virus]
 emb|CAA77477.1| RNA-dependent DNA polymerase, partial [Friend murine leukemia virus]
          Length = 1204

 Score = 1308 bits (3386), Expect = 0.0
 Identities = 642/678 (94%), Positives = 655/678 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSK PDV LGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 125  LTLNIEDEYRLHETSKGPDVPLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 184

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 185  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 244

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQ LFAFEWRDPEMGI
Sbjct: 245  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQSLFAFEWRDPEMGI 304

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 305  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 364

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 365  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 424

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF WGPDQQKAYQEIKQALLTAPALGL
Sbjct: 425  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFEWGPDQQKAYQEIKQALLTAPALGL 484

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 485  PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 544

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGP+VALN
Sbjct: 545  TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPIVALN 604

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTRPDLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 605  PATLLPLPEEGLQHDCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 664

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEV+WAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 665  VTTETEVVWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 724

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKG+ AEARGNRMADQAAR+ 
Sbjct: 725  RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNRAEARGNRMADQAAREV 784

Query: 4286 AITENPDTSTLLIENSSP 4233
            A  E P+TSTLLIENS+P
Sbjct: 785  ATRETPETSTLLIENSAP 802


>sp|P08361.2|POL_MLVCB RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains:
            RecName: Full=Matrix protein p15; Contains: RecName:
            Full=RNA-binding phosphoprotein p12; AltName: Full=pp12;
            Contains: RecName: Full=Capsid protein p30; Contains:
            RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol;
            Contains: RecName: Full=Protease; Contains: RecName:
            Full=Reverse transcriptase/ribonuclease H; Short=RT;
            Contains: RecName: Full=Integrase; Short=IN
          Length = 1733

 Score = 1308 bits (3385), Expect = 0.0
 Identities = 643/678 (94%), Positives = 656/678 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 657  LTLNIEDEYRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 716

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 717  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 776

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 777  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 836

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLA FRIQHP            LAATSELDCQQG
Sbjct: 837  SGQLTWTRLPQGFKNSPTLFDEALHRDLAGFRIQHPDLILLQYVDDLLLAATSELDCQQG 896

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQP PKTPRQ
Sbjct: 897  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPIPKTPRQ 956

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKA+QEIKQALLTAPALGL
Sbjct: 957  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAFQEIKQALLTAPALGL 1016

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1017 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1076

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 1077 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 1136

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTR DL DQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 1137 PATLLPLPEEGLQHDCLDILAEAHGTRSDLMDQPLPDADHTWYTDGSSFLQEGQRKAGAA 1196

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWA+ALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1197 VTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1256

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKG+SAEARGNRMADQAAR+ 
Sbjct: 1257 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREV 1316

Query: 4286 AITENPDTSTLLIENSSP 4233
            A  E P+TSTLLIENS+P
Sbjct: 1317 ATRETPETSTLLIENSTP 1334


>gb|AAO61197.1|AF411814_3 Gag-Pro-Pol polyprotein [Amphotropic murine leukemia virus]
          Length = 1736

 Score = 1306 bits (3381), Expect = 0.0
 Identities = 642/678 (94%), Positives = 656/678 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSKEPDVSLGSTWLS FPQAWAETGGMGLAVRQAPLIIPLKATSTPV
Sbjct: 657  LTLNIEDEYRLHETSKEPDVSLGSTWLSAFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 716

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLP+KKPGTNDYRPVQDLREVN
Sbjct: 717  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPIKKPGTNDYRPVQDLREVN 776

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 777  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 836

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLA FRIQHP            LAA+SELDCQQG
Sbjct: 837  SGQLTWTRLPQGFKNSPTLFDEALHRDLAGFRIQHPDLILLQYVDDLLLAASSELDCQQG 896

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 897  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 956

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL
Sbjct: 957  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 1016

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1017 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1076

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 1077 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 1136

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLP+EGLQH+CLDILAEAHGTR DLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 1137 PATLLPLPKEGLQHDCLDILAEAHGTRSDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 1196

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWA+ALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1197 VTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1256

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNK EILALLKALFLPKRLSIIHCPGHQKG+SAEARGNRMADQAAR+ 
Sbjct: 1257 RRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREV 1316

Query: 4286 AITENPDTSTLLIENSSP 4233
            A  E PDTSTLLIENS+P
Sbjct: 1317 ATRETPDTSTLLIENSTP 1334


>dbj|BAX25197.1| POL precursor polyprotein, partial [Friend murine leukemia virus
            (ISOLATE 57)]
          Length = 1204

 Score = 1305 bits (3377), Expect = 0.0
 Identities = 641/681 (94%), Positives = 656/681 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSK PDV LGSTWLSDFPQAWAETGGMGLAVRQAPLII LKATSTPV
Sbjct: 125  LTLNIEDEYRLHETSKGPDVPLGSTWLSDFPQAWAETGGMGLAVRQAPLIISLKATSTPV 184

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 185  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 244

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQ LFAFEW+DPEMGI
Sbjct: 245  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQSLFAFEWKDPEMGI 304

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 305  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 364

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 365  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 424

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF WGPDQQKAYQEIKQALLTAPALGL
Sbjct: 425  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGL 484

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 485  PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 544

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGP+VALN
Sbjct: 545  TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPIVALN 604

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTRPDLTDQPLPDADHTWYT GSS LQEGQR+AGAA
Sbjct: 605  PATLLPLPEEGLQHDCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAA 664

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 665  VTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 724

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKG+ AEARGNRMADQAAR+ 
Sbjct: 725  RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNHAEARGNRMADQAAREV 784

Query: 4286 AITENPDTSTLLIENSSPNSR 4224
            A  E P+TSTLLIENS+P +R
Sbjct: 785  ATRETPETSTLLIENSAPYTR 805


>gb|AAC98548.1| pol polypeptide, partial [Murine leukemia virus]
          Length = 1204

 Score = 1305 bits (3376), Expect = 0.0
 Identities = 640/678 (94%), Positives = 656/678 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATS+PV
Sbjct: 125  LTLNIEDEYRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSSPV 184

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 185  SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 244

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
Sbjct: 245  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 304

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSE DCQQG
Sbjct: 305  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSENDCQQG 364

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQ LG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQP PKTPRQ
Sbjct: 365  TRALLQILGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPIPKTPRQ 424

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL
Sbjct: 425  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 484

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQ+LGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 485  PDLTKPFELFVDEKQGYAKGVLTQRLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 544

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLV+LAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN
Sbjct: 545  TKDAGKLTMGQPLVVLAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 604

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGL+H+CLDILAEAHGTRPDLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 605  PATLLPLPEEGLRHDCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 664

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWAKALP+GTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 665  VTTETEVIWAKALPSGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 724

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNK EILALLKALFLPKRLSIIHCPGHQKG+SAEARGNRMADQAAR+ 
Sbjct: 725  RRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREI 784

Query: 4286 AITENPDTSTLLIENSSP 4233
            A  E P+TSTLLIENS+P
Sbjct: 785  ASKETPETSTLLIENSTP 802


>sp|P26808.2|POL_MLVFP RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix
            protein p15; Contains: RecName: Full=RNA-binding
            phosphoprotein p12; AltName: Full=pp12; Contains:
            RecName: Full=Capsid protein p30; Contains: RecName:
            Full=Nucleocapsid protein p10-Pol; Short=NC-pol;
            Contains: RecName: Full=Protease; Contains: RecName:
            Full=Reverse transcriptase/ribonuclease H; Short=RT;
            Contains: RecName: Full=Integrase; Short=IN
          Length = 1738

 Score = 1303 bits (3371), Expect = 0.0
 Identities = 639/681 (93%), Positives = 655/681 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSK PDV LGSTWLSDFPQAWAETGGMGLAVRQAPLIIPL+A STPV
Sbjct: 659  LTLNIEDEYRLHETSKGPDVPLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLRAASTPV 718

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMS+EARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 719  SIKQYPMSREARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 778

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQ LFAFEWRDPEMGI
Sbjct: 779  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQSLFAFEWRDPEMGI 838

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 839  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 898

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 899  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 958

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF WGPDQQKAYQEIKQALLTAPALGL
Sbjct: 959  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGL 1018

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 1019 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 1078

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGP+V LN
Sbjct: 1079 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPIVTLN 1138

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTRPDLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 1139 PATLLPLPEEGLQHDCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 1198

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 1199 VTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 1258

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNK+EILALLKALFLPKRLSIIHCPGHQKG+ AEARGNRMADQAAR+ 
Sbjct: 1259 RRGLLTSEGKEIKNKEEILALLKALFLPKRLSIIHCPGHQKGNRAEARGNRMADQAAREV 1318

Query: 4286 AITENPDTSTLLIENSSPNSR 4224
            A  E P+TSTLLIENS+P +R
Sbjct: 1319 ATRETPETSTLLIENSAPYTR 1339


>gb|AAA46477.1| pol protein, partial [Friend murine leukemia virus]
          Length = 1204

 Score = 1303 bits (3371), Expect = 0.0
 Identities = 639/681 (93%), Positives = 655/681 (96%)
 Frame = -2

Query: 6266 MTLNIEDEHRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPV 6087
            +TLNIEDE+RLHETSK PDV LGSTWLSDFPQAWAETGGMGLAVRQAPLIIPL+A STPV
Sbjct: 125  LTLNIEDEYRLHETSKGPDVPLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLRAASTPV 184

Query: 6086 SIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 5907
            SIKQYPMS+EARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN
Sbjct: 185  SIKQYPMSREARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVN 244

Query: 5906 KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI 5727
            KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQ LFAFEWRDPEMGI
Sbjct: 245  KRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQSLFAFEWRDPEMGI 304

Query: 5726 SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPXXXXXXXXXXXXLAATSELDCQQG 5547
            SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP            LAATSELDCQQG
Sbjct: 305  SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQG 364

Query: 5546 TRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 5367
            TRALLQTLG+LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ
Sbjct: 365  TRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQ 424

Query: 5366 LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGL 5187
            LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF WGPDQQKAYQEIKQALLTAPALGL
Sbjct: 425  LREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGL 484

Query: 5186 PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 5007
            PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL
Sbjct: 485  PDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVL 544

Query: 5006 TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALN 4827
            TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGP+V LN
Sbjct: 545  TKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPIVTLN 604

Query: 4826 PATLLPLPEEGLQHNCLDILAEAHGTRPDLTDQPLPDADHTWYTGGSSLLQEGQRKAGAA 4647
            PATLLPLPEEGLQH+CLDILAEAHGTRPDLTDQPLPDADHTWYT GSS LQEGQRKAGAA
Sbjct: 605  PATLLPLPEEGLQHDCLDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAA 664

Query: 4646 VTTETEVIWAKALPAGTSAQRAQLIALTQALRMAEGKKLNVYTNSRYAFATAHIHGEIYR 4467
            VTTETEVIWAKALPAGTSAQRA+LIALTQAL+MAEGKKLNVYT+SRYAFATAHIHGEIYR
Sbjct: 665  VTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYR 724

Query: 4466 RRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKA 4287
            RRGLLTSEGKEIKNK+EILALLKALFLPKRLSIIHCPGHQKG+ AEARGNRMADQAAR+ 
Sbjct: 725  RRGLLTSEGKEIKNKEEILALLKALFLPKRLSIIHCPGHQKGNRAEARGNRMADQAAREV 784

Query: 4286 AITENPDTSTLLIENSSPNSR 4224
            A  E P+TSTLLIENS+P +R
Sbjct: 785  ATRETPETSTLLIENSAPYTR 805