BLASTX nr result
ID: Acanthopanax22_contig00000079
seq
BLASTX 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Acanthopanax22_contig00000079 (1432 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 149,584,005 sequences; 54,822,741,787 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|KEM88980.1| RNA polymerase Rpb1, domain 5 family protein [Esc... 800 0.0 gb|EIQ34854.1| RNA polymerase Rpb1, domain 5 family protein [Shi... 800 0.0 gb|KDW69762.1| RNA polymerase Rpb1, domain 5 family protein, par... 800 0.0 gb|KDA71223.1| RNA polymerase Rpb1, domain 5 family protein [Esc... 800 0.0 gb|KFV38735.1| hypothetical protein GS39_00105, partial [Escheri... 800 0.0 gb|KDT93139.1| RNA polymerase Rpb1, domain 5 family protein, par... 800 0.0 gb|EIQ48435.1| DNA-directed RNA polymerase subunit beta' domain ... 793 0.0 gb|ENF12217.1| DNA-directed RNA polymerase, beta'' subunit, part... 800 0.0 gb|KDW91924.1| DNA-directed RNA polymerase, beta'' subunit, part... 800 0.0 gb|KEJ54042.1| DNA-directed RNA polymerase, beta'' subunit [Esch... 800 0.0 gb|OUG24204.1| DNA-directed RNA polymerase subunit beta' [Escher... 800 0.0 dbj|GAR61883.1| DNA-directed RNA polymerase subunit beta' [Salmo... 791 0.0 gb|KOK13824.1| DNA-directed RNA polymerase subunit beta', partia... 791 0.0 gb|ESD77779.1| transcriptase subunit beta' domain protein, parti... 800 0.0 ref|WP_052456211.1| DNA-directed RNA polymerase subunit beta' [K... 785 0.0 ref|WP_074155517.1| DNA-directed RNA polymerase subunit beta', p... 800 0.0 gb|PLN95832.1| DNA-directed RNA polymerase subunit beta', partia... 785 0.0 emb|SBV62423.1| RNA polymerase, beta prime subunit (fragment) [u... 788 0.0 emb|CGY79940.1| DNA-directed RNA polymerase subunit beta' [Salmo... 791 0.0 gb|KFH74898.1| DNA-directed RNA polymerase subunit beta', partia... 800 0.0 >gb|KEM88980.1| RNA polymerase Rpb1, domain 5 family protein [Escherichia coli 6-537-08_S4_C1] Length = 456 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 12 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 71 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 72 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 131 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 132 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 191 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 192 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 251 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 252 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 311 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 312 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 371 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 372 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 431 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 432 QVTAEDASASLAELLNAGLGGSDNE 456 >gb|EIQ34854.1| RNA polymerase Rpb1, domain 5 family protein [Shigella flexneri K-404] gb|EJL18746.1| RNA polymerase Rpb1, domain 5 family protein [Shigella flexneri 6603-63] Length = 476 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 32 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 91 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 92 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 151 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 152 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 211 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 212 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 271 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 272 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 331 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 332 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 391 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 392 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 451 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 452 QVTAEDASASLAELLNAGLGGSDNE 476 >gb|KDW69762.1| RNA polymerase Rpb1, domain 5 family protein, partial [Escherichia coli 1-392-07_S1_C1] Length = 561 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 117 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 176 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 177 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 236 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 237 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 296 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 297 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 356 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 357 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 416 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 417 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 476 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 477 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 536 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 537 QVTAEDASASLAELLNAGLGGSDNE 561 >gb|KDA71223.1| RNA polymerase Rpb1, domain 5 family protein [Escherichia coli 2-005-03_S3_C2] Length = 605 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 161 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 220 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 221 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 280 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 281 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 340 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 341 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 400 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 401 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 460 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 461 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 520 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 521 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 580 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 581 QVTAEDASASLAELLNAGLGGSDNE 605 >gb|KFV38735.1| hypothetical protein GS39_00105, partial [Escherichia coli] Length = 618 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 174 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 233 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 234 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 293 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 294 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 353 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 354 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 413 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 414 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 473 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 474 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 533 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 534 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 593 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 594 QVTAEDASASLAELLNAGLGGSDNE 618 >gb|KDT93139.1| RNA polymerase Rpb1, domain 5 family protein, partial [Escherichia coli 3-267-03_S3_C2] Length = 626 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 182 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 241 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 242 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 301 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 302 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 361 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 362 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 421 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 422 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 481 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 482 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 541 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 542 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 601 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 602 QVTAEDASASLAELLNAGLGGSDNE 626 >gb|EIQ48435.1| DNA-directed RNA polymerase subunit beta' domain protein [Shigella sonnei 3226-85] gb|EIQ78120.1| DNA-directed RNA polymerase subunit beta' domain protein [Shigella flexneri 1235-66] Length = 441 Score = 793 bits (2047), Expect = 0.0 Identities = 413/441 (93%), Positives = 414/441 (93%) Frame = -1 Query: 1420 VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMP 1241 +NSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMP Sbjct: 1 MNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMP 60 Query: 1240 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN 1061 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN Sbjct: 61 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN 120 Query: 1060 DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE 881 DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE Sbjct: 121 DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE 180 Query: 880 ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVER 701 ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVER Sbjct: 181 ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVER 240 Query: 700 GDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI 521 GDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI Sbjct: 241 GDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI 300 Query: 520 VNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQ 341 VNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQ Sbjct: 301 VNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQ 360 Query: 340 ETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAPQVTA 161 ETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD APQVTA Sbjct: 361 ETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTA 420 Query: 160 EDXXXXXXXXXXXXXXXSDNE 98 ED SDNE Sbjct: 421 EDASASLAELLNAGLGGSDNE 441 >gb|ENF12217.1| DNA-directed RNA polymerase, beta'' subunit, partial [Escherichia coli P0304777.5] Length = 645 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 201 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 260 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 261 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 320 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 321 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 380 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 381 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 440 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 441 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 500 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 501 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 560 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 561 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 620 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 621 QVTAEDASASLAELLNAGLGGSDNE 645 >gb|KDW91924.1| DNA-directed RNA polymerase, beta'' subunit, partial [Escherichia coli 2-210-07_S3_C2] Length = 656 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 212 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 271 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 272 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 331 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 332 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 391 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 392 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 451 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 452 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 511 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 512 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 571 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 572 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 631 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 632 QVTAEDASASLAELLNAGLGGSDNE 656 >gb|KEJ54042.1| DNA-directed RNA polymerase, beta'' subunit [Escherichia coli 3-020-07_S4_C1] Length = 661 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 217 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 276 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 277 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 336 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 337 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 396 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 397 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 456 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 457 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 516 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 517 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 576 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 577 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 636 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 637 QVTAEDASASLAELLNAGLGGSDNE 661 >gb|OUG24204.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli] Length = 711 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 267 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 326 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 327 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 386 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 387 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 446 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 447 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 506 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 507 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 566 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 567 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 626 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 627 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 686 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 687 QVTAEDASASLAELLNAGLGGSDNE 711 >dbj|GAR61883.1| DNA-directed RNA polymerase subunit beta' [Salmonella enterica] Length = 476 Score = 791 bits (2042), Expect = 0.0 Identities = 411/445 (92%), Positives = 416/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV+AKGDGEQVAGGETVANWDP Sbjct: 32 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANWDP 91 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGF+RFTDMIDGQTITRQTDELTGLSSLVVLDSAERT GGKDLRPALKIVD Sbjct: 92 HTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKIVD 151 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 152 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 211 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEI+GIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 212 DLFEARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 271 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 272 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 331 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATI +AGSSDFLEGEQVEYSRVKIANRELEANGKVGAT+SRDLLGITKASLATESFISA Sbjct: 332 KATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFISA 391 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 392 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPAAP 451 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 452 QVTAEDASASLAELLNAGLGGSDNE 476 >gb|KOK13824.1| DNA-directed RNA polymerase subunit beta', partial [Salmonella enterica subsp. enterica serovar Enteritidis] Length = 524 Score = 791 bits (2042), Expect = 0.0 Identities = 410/445 (92%), Positives = 415/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV+AKGDGEQVAGGETVANWDP Sbjct: 80 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANWDP 139 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGF+RFTDMIDGQTITRQTDELTGLSSLVVLDSAERT GGKDLRPALKIVD Sbjct: 140 HTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKIVD 199 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 200 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 259 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEI+GIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 260 DLFEARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 319 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 320 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 379 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATI +AGSSDFLEGEQVEYSRVKIANRELEANGKVGAT+SRDLLGITKASLATESFISA Sbjct: 380 KATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFISA 439 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD P Sbjct: 440 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPATP 499 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 500 QVTAEDASASLAELLNAGLGGSDNE 524 >gb|ESD77779.1| transcriptase subunit beta' domain protein, partial [Escherichia coli 908541] Length = 785 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 341 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 400 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 401 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 460 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 461 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 520 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 521 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 580 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 581 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 640 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 641 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 700 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 701 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 760 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 761 QVTAEDASASLAELLNAGLGGSDNE 785 >ref|WP_052456211.1| DNA-directed RNA polymerase subunit beta' [Klebsiella pneumoniae] Length = 458 Score = 785 bits (2026), Expect = 0.0 Identities = 402/425 (94%), Positives = 411/425 (96%) Frame = -1 Query: 1429 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1250 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV+AKGDGEQVAGGETVANWDPH Sbjct: 15 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANWDPH 74 Query: 1249 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1070 TMPVITEVSGF+RFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA Sbjct: 75 TMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 134 Query: 1069 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD 890 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD Sbjct: 135 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD 194 Query: 889 LFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER 710 LFEARRPKEPAILAEISGI+SFGKETKGKRRLVITPVDGS+PYEEMIPKWRQLNVFEGER Sbjct: 195 LFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFEGER 254 Query: 709 VERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 530 VERGDV+SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK Sbjct: 255 VERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 314 Query: 529 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 350 ATI +AGSSDFLEGEQVEYSRVKIANRELEANGKVGAT+SRDLLGITKASLATESFISAA Sbjct: 315 ATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFISAA 374 Query: 349 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAPQ 170 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD APQ Sbjct: 375 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPAAPQ 434 Query: 169 VTAED 155 V+ E+ Sbjct: 435 VSVEE 439 >ref|WP_074155517.1| DNA-directed RNA polymerase subunit beta', partial [Escherichia coli] Length = 867 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 423 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 482 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 483 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 542 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 543 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 602 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 603 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 662 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 663 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 722 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 723 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 782 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 783 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 842 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 843 QVTAEDASASLAELLNAGLGGSDNE 867 >gb|PLN95832.1| DNA-directed RNA polymerase subunit beta', partial [Klebsiella pneumoniae] Length = 489 Score = 785 bits (2026), Expect = 0.0 Identities = 402/425 (94%), Positives = 411/425 (96%) Frame = -1 Query: 1429 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1250 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV+AKGDGEQVAGGETVANWDPH Sbjct: 46 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANWDPH 105 Query: 1249 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1070 TMPVITEVSGF+RFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA Sbjct: 106 TMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 165 Query: 1069 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD 890 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD Sbjct: 166 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD 225 Query: 889 LFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER 710 LFEARRPKEPAILAEISGI+SFGKETKGKRRLVITPVDGS+PYEEMIPKWRQLNVFEGER Sbjct: 226 LFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFEGER 285 Query: 709 VERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 530 VERGDV+SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK Sbjct: 286 VERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 345 Query: 529 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 350 ATI +AGSSDFLEGEQVEYSRVKIANRELEANGKVGAT+SRDLLGITKASLATESFISAA Sbjct: 346 ATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFISAA 405 Query: 349 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAPQ 170 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD APQ Sbjct: 406 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPAAPQ 465 Query: 169 VTAED 155 V+ E+ Sbjct: 466 VSVEE 470 >emb|SBV62423.1| RNA polymerase, beta prime subunit (fragment) [uncultured Citrobacter sp.] Length = 586 Score = 788 bits (2035), Expect = 0.0 Identities = 404/425 (95%), Positives = 412/425 (96%) Frame = -1 Query: 1429 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1250 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG+V+AKGDGEQVAGGETVANWDPH Sbjct: 143 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANWDPH 202 Query: 1249 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1070 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA Sbjct: 203 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 262 Query: 1069 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD 890 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLAR+PQESGGTKDITGGLPRVAD Sbjct: 263 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPRVAD 322 Query: 889 LFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER 710 LFEARRPKEPAILAEISGI+SFGKETKGKRRLVITPVDGS+PYEEMIPKWRQLNVFEGER Sbjct: 323 LFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFEGER 382 Query: 709 VERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 530 VERGDV+SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK Sbjct: 383 VERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 442 Query: 529 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 350 ATI +AGSSDFLEGEQVEYSRVKIANRELEANGKVGAT+SRDLLGITKASLATESFISAA Sbjct: 443 ATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFISAA 502 Query: 349 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAPQ 170 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD APQ Sbjct: 503 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPAAPQ 562 Query: 169 VTAED 155 VTAED Sbjct: 563 VTAED 567 >emb|CGY79940.1| DNA-directed RNA polymerase subunit beta' [Salmonella enterica subsp. enterica serovar Typhi] Length = 661 Score = 791 bits (2042), Expect = 0.0 Identities = 410/445 (92%), Positives = 415/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV+AKGDGEQVAGGETVANWDP Sbjct: 217 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANWDP 276 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGF+RFTDMIDGQTITRQTDELTGLSSLVVLDSAERT GGKDLRPALKIVD Sbjct: 277 HTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKIVD 336 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 337 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 396 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEI+GIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 397 DLFEARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 456 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 457 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 516 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATI +AGSSDFLEGEQVEYSRVKIANRELEANGKVGAT+SRDLLGITKASLATESFISA Sbjct: 517 KATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFISA 576 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD P Sbjct: 577 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPATP 636 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 637 QVTAEDASASLAELLNAGLGGSDNE 661 >gb|KFH74898.1| DNA-directed RNA polymerase subunit beta', partial [Escherichia coli] Length = 915 Score = 800 bits (2067), Expect = 0.0 Identities = 418/445 (93%), Positives = 418/445 (93%) Frame = -1 Query: 1432 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1253 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP Sbjct: 471 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 530 Query: 1252 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1073 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD Sbjct: 531 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 590 Query: 1072 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 893 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA Sbjct: 591 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 650 Query: 892 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 713 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE Sbjct: 651 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 710 Query: 712 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 533 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR Sbjct: 711 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 770 Query: 532 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 353 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA Sbjct: 771 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 830 Query: 352 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXAP 173 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD AP Sbjct: 831 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 890 Query: 172 QVTAEDXXXXXXXXXXXXXXXSDNE 98 QVTAED SDNE Sbjct: 891 QVTAEDASASLAELLNAGLGGSDNE 915