BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Acanthopanax21_contig00029092
         (581 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OEL32462.1| DNA-directed RNA polymerase II subunit 1 [Dichant...    62   7e-08

>gb|OEL32462.1| DNA-directed RNA polymerase II subunit 1 [Dichanthelium oligosanthes]
          Length = 1901

 Score = 62.4 bits (150), Expect = 7e-08
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
 Frame = -2

Query: 490  IQPHFSSL*PNLPILQPDLSLLQPYLAIXXXXXXXLQP*FTKLQSHLSQLQSYIP*L*SL 311
            IQP+   + P LP +QP+++ +QPYLA        LQP  TKLQS+ S+LQS+I      
Sbjct: 1667 IQPNIPIIQPYLPFIQPNIACIQPYLAWIQPNITKLQPDITKLQSYFSELQSFIS----- 1721

Query: 310  IKIHLLTSVFTYQ----SM*SVFSKLQPNIT--FTYISFIWLQAQPIVP 182
             ++     +F+ Q    S+ S FSKLQ N+T   +YI+ I+     I P
Sbjct: 1722 -QVQPFACIFSKQPKDDSIQSDFSKLQSNVTDLLSYITIIFTTKSVIQP 1769