BLASTX nr result
ID: Acanthopanax21_contig00015408
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Acanthopanax21_contig00015408
(1694 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_017227798.1| PREDICTED: RNA polymerase sigma factor sigC ... 624 0.0
ref|XP_011081724.1| RNA polymerase sigma factor sigC isoform X2 ... 571 0.0
ref|XP_020550776.1| RNA polymerase sigma factor sigC isoform X1 ... 558 0.0
ref|XP_022872057.1| RNA polymerase sigma factor sigC [Olea europ... 555 0.0
ref|XP_012857954.1| PREDICTED: RNA polymerase sigma factor sigC ... 545 0.0
ref|XP_023891394.1| RNA polymerase sigma factor sigC [Quercus su... 545 0.0
ref|XP_018837561.1| PREDICTED: RNA polymerase sigma factor sigC-... 528 e-180
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC ... 520 e-176
emb|CDP08205.1| unnamed protein product [Coffea canephora] 518 e-175
ref|XP_009757464.1| PREDICTED: RNA polymerase sigma factor sigC ... 512 e-173
ref|XP_015085648.1| PREDICTED: RNA polymerase sigma factor sigC ... 511 e-173
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC ... 507 e-172
ref|XP_009623296.1| PREDICTED: RNA polymerase sigma factor sigC ... 507 e-171
ref|XP_019263762.1| PREDICTED: RNA polymerase sigma factor sigC ... 506 e-171
ref|XP_016487978.1| PREDICTED: RNA polymerase sigma factor sigC-... 503 e-170
gb|AKC88685.1| sigma factor [Francoa sonchifolia] 501 e-169
gb|KDP34138.1| hypothetical protein JCGZ_07709 [Jatropha curcas] 501 e-169
gb|OMO86642.1| RNA polymerase sigma-70 [Corchorus olitorius] 500 e-169
ref|XP_015167787.1| PREDICTED: RNA polymerase sigma factor sigC ... 500 e-169
ref|XP_012077339.1| RNA polymerase sigma factor sigC [Jatropha c... 501 e-169
>ref|XP_017227798.1| PREDICTED: RNA polymerase sigma factor sigC [Daucus carota subsp.
sativus]
gb|KZN11801.1| hypothetical protein DCAR_004457 [Daucus carota subsp. sativus]
Length = 553
Score = 624 bits (1610), Expect = 0.0
Identities = 336/544 (61%), Positives = 403/544 (74%), Gaps = 8/544 (1%)
Frame = +2
Query: 26 TNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQTVSNDYSD 205
T S WP+SYSFR ME SYD+ RVSFP + GE ETM+ND R HSC+SAAQT+SN+Y +
Sbjct: 22 TTSSSWPSSYSFRAMEASYDTTRVSFPYFVLGEIETMHNDLPRVHSCASAAQTLSNNYLE 81
Query: 206 TEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLMNNLNMLEKT 385
TE I ++RK S G + II+ + + P TS +A K HF VLMNNL+MLEKT
Sbjct: 82 TEHI--SIRKSSGGDLSCIISSSFRKPGSA------TSAEASKLSHFGVLMNNLSMLEKT 133
Query: 386 FADSDMVRLERDILVQLERLGALNLFHAFLSRSRSPTLVDLSDASTESNEELRMNKHVD- 562
FADSD++RLE DIL QL+RLGAL LFH LSR+RS + + +E EE +M HV+
Sbjct: 134 FADSDVLRLENDILSQLDRLGALKLFHTCLSRTRSRPG---NSSVSEDIEEHQMESHVNA 190
Query: 563 ESMAEIVVHSGXXXXXXXXXXXXXXXL-------SKTNXXXXXXXXXXXXXXLKYNGRKP 721
+ MA+IVV SG S + KY+G +P
Sbjct: 191 DQMAKIVVSSGKKEKRKAKRVKSSWNEKDFYLLPSNSKPKHQHQNLSSPGKSSKYSGSRP 250
Query: 722 KITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKTLQQNLHFGWYC 901
K+ RNE E+ GV+L+A LERI+M LE+ETG+ ASLSSWAEAA +DKKTLQQNLHFG YC
Sbjct: 251 KVARNEAELTVGVKLVANLERIKMQLEKETGETASLSSWAEAANIDKKTLQQNLHFGCYC 310
Query: 902 RSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRGYKFSTYIQYWI 1081
+ E+LRST+SLI+Y+ARNYR +GV F+DLIQAG GVLQGAERFDHTRGY+FSTYIQYWI
Sbjct: 311 KDELLRSTRSLILYIARNYRGVGVGFEDLIQAGSIGVLQGAERFDHTRGYRFSTYIQYWI 370
Query: 1082 RKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIARFTGLSLAKIA 1261
RKS+LMLVERN RGVRIP+AL+KA+ KIQKARKTL N G YPDD+EIA TGLSL+KIA
Sbjct: 371 RKSILMLVERNCRGVRIPYALSKAVKKIQKARKTLSNSLGTYPDDNEIAESTGLSLSKIA 430
Query: 1262 SAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDLNNLLNALEPKE 1441
+A CLRVVGSLDQ+IGDFTS K+LEL PDTSIK PEETV+ +HM+KD+ +LL L+P+E
Sbjct: 431 AASNCLRVVGSLDQRIGDFTSVKYLELMPDTSIKGPEETVMREHMLKDMYDLLAELDPRE 490
Query: 1442 RQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETLRSLNHYLNYVV 1621
RQVLLLR GL+GH CMSLQEIGRLF VSKEWIRKIERTAL KLR++ETL SL+HYL Y+
Sbjct: 491 RQVLLLRLGLQGHHCMSLQEIGRLFSVSKEWIRKIERTALRKLRDQETLHSLSHYL-YMN 549
Query: 1622 PYNQ 1633
NQ
Sbjct: 550 HMNQ 553
>ref|XP_011081724.1| RNA polymerase sigma factor sigC isoform X2 [Sesamum indicum]
Length = 556
Score = 571 bits (1472), Expect = 0.0
Identities = 307/543 (56%), Positives = 388/543 (71%), Gaps = 8/543 (1%)
Frame = +2
Query: 5 SVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQT 184
SVQSP T++ P +Y RG + SY AR+S SV+ GE+ET+ ND R H CSS+ Q
Sbjct: 13 SVQSPFSTSTSSLPYTYPCRGRDTSYILARLSASSVLYGETETL-NDASRVHVCSSSPQL 71
Query: 185 VSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLMNN 364
+ N Y T + KV V K S G+ +++ +I+ ED+ +LTSLQA + FR+LM N
Sbjct: 72 LENYYLGTRETKVAVGKGSSDGLSSLLEKHIETSNSEDKLAYLTSLQATQLSQFRLLMKN 131
Query: 365 LNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRS-RSPTLVDLSDASTESNEEL 541
L+MLE F+DS++VRLERDIL QLERLGAL LF++ LSR+ +S T DLS+A+TE EE
Sbjct: 132 LDMLEDMFSDSNVVRLERDILEQLERLGALRLFYSCLSRTLKSSTSFDLSNATTELVEEP 191
Query: 542 RMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLS-------KTNXXXXXXXXXXXXXXL 700
++N VD + E VV SG S T
Sbjct: 192 KVNDSVDNHVGE-VVRSGRKELRKLRRKRMLDKESGITTQELPTVTISKQHKYASARRAS 250
Query: 701 KYNGRKPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKTLQQN 880
+ ++ +I RNE EM GV+L+A+LE++R ILEEETGQ ASLSSWAEAAG+ KK LQQN
Sbjct: 251 RSRNKRQRIARNEAEMSSGVKLVAELEKVRTILEEETGQVASLSSWAEAAGIKKKELQQN 310
Query: 881 LHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRGYKFS 1060
LH+GW+CR E+LRST+SL++++ARNY +GVAF+DLIQAG GVLQGAERFD +RGYKFS
Sbjct: 311 LHYGWHCRDELLRSTRSLVLFIARNYWGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFS 370
Query: 1061 TYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIARFTG 1240
TY+QYWIRKSM LV R+ARGVRIP L+K IN++Q+ARK L GKYPDD +IA++TG
Sbjct: 371 TYVQYWIRKSMSTLVARHARGVRIPCTLSKVINQVQRARKALSTSNGKYPDDSDIAKYTG 430
Query: 1241 LSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDLNNLL 1420
LS+AKI SA KCLRVVGS+DQKIG+ SAK++E+ PDTSI SPEETVI QHMI D++ LL
Sbjct: 431 LSIAKIMSASKCLRVVGSIDQKIGEAISAKYMEIAPDTSILSPEETVIRQHMINDVHRLL 490
Query: 1421 NALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETLRSLN 1600
N LEP+E+QVL+LRFGL QC SL+EIGRLFCVSKEWIRKIER AL KLR ++L+ L+
Sbjct: 491 NGLEPREKQVLILRFGLGNRQCKSLEEIGRLFCVSKEWIRKIERAALAKLRNEDSLKILS 550
Query: 1601 HYL 1609
HY+
Sbjct: 551 HYV 553
>ref|XP_020550776.1| RNA polymerase sigma factor sigC isoform X1 [Sesamum indicum]
Length = 578
Score = 558 bits (1439), Expect = 0.0
Identities = 307/565 (54%), Positives = 388/565 (68%), Gaps = 30/565 (5%)
Frame = +2
Query: 5 SVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQT 184
SVQSP T++ P +Y RG + SY AR+S SV+ GE+ET+ ND R H CSS+ Q
Sbjct: 13 SVQSPFSTSTSSLPYTYPCRGRDTSYILARLSASSVLYGETETL-NDASRVHVCSSSPQL 71
Query: 185 VSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLMNN 364
+ N Y T + KV V K S G+ +++ +I+ ED+ +LTSLQA + FR+LM N
Sbjct: 72 LENYYLGTRETKVAVGKGSSDGLSSLLEKHIETSNSEDKLAYLTSLQATQLSQFRLLMKN 131
Query: 365 LNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRS-RSPTLVDLSDASTESNEEL 541
L+MLE F+DS++VRLERDIL QLERLGAL LF++ LSR+ +S T DLS+A+TE EE
Sbjct: 132 LDMLEDMFSDSNVVRLERDILEQLERLGALRLFYSCLSRTLKSSTSFDLSNATTELVEEP 191
Query: 542 RMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLS-------KTNXXXXXXXXXXXXXXL 700
++N VD + E VV SG S T
Sbjct: 192 KVNDSVDNHVGE-VVRSGRKELRKLRRKRMLDKESGITTQELPTVTISKQHKYASARRAS 250
Query: 701 KYNGRKPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKTLQQN 880
+ ++ +I RNE EM GV+L+A+LE++R ILEEETGQ ASLSSWAEAAG+ KK LQQN
Sbjct: 251 RSRNKRQRIARNEAEMSSGVKLVAELEKVRTILEEETGQVASLSSWAEAAGIKKKELQQN 310
Query: 881 LHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQA--------------------- 997
LH+GW+CR E+LRST+SL++++ARNY +GVAF+DLIQA
Sbjct: 311 LHYGWHCRDELLRSTRSLVLFIARNYWGLGVAFEDLIQAEYCSHKKPKLEFVLFIEHSWN 370
Query: 998 -GRYGVLQGAERFDHTRGYKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKA 1174
G GVLQGAERFD +RGYKFSTY+QYWIRKSM LV R+ARGVRIP L+K IN++Q+A
Sbjct: 371 AGNIGVLQGAERFDQSRGYKFSTYVQYWIRKSMSTLVARHARGVRIPCTLSKVINQVQRA 430
Query: 1175 RKTLCNRQGKYPDDDEIARFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDT 1354
RK L GKYPDD +IA++TGLS+AKI SA KCLRVVGS+DQKIG+ SAK++E+ PDT
Sbjct: 431 RKALSTSNGKYPDDSDIAKYTGLSIAKIMSASKCLRVVGSIDQKIGEAISAKYMEIAPDT 490
Query: 1355 SIKSPEETVIWQHMIKDLNNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEW 1534
SI SPEETVI QHMI D++ LLN LEP+E+QVL+LRFGL QC SL+EIGRLFCVSKEW
Sbjct: 491 SILSPEETVIRQHMINDVHRLLNGLEPREKQVLILRFGLGNRQCKSLEEIGRLFCVSKEW 550
Query: 1535 IRKIERTALTKLRERETLRSLNHYL 1609
IRKIER AL KLR ++L+ L+HY+
Sbjct: 551 IRKIERAALAKLRNEDSLKILSHYV 575
>ref|XP_022872057.1| RNA polymerase sigma factor sigC [Olea europaea var. sylvestris]
Length = 558
Score = 555 bits (1429), Expect = 0.0
Identities = 307/549 (55%), Positives = 395/549 (71%), Gaps = 14/549 (2%)
Frame = +2
Query: 5 SVQSP-SLTNSVFWPTSYSFRGM--EGSYDSARVSFPSVISGESETMYNDPLRAHSCSSA 175
SVQS S ++S P+SYS RG E +Y ++ SV+ GE+E + DPL +C ++
Sbjct: 13 SVQSLLSTSSSSSLPSSYSCRGKGRESTY-LTKLPITSVVYGETEALI-DPLGPRTCLTS 70
Query: 176 AQTVSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVL 355
Q + ++Y ++IK++ K+S G+Y++ +DNIQM A ED+ FL SLQA + HF +L
Sbjct: 71 PQILEDNYFGNKEIKMDPGKQSRNGLYSLSDDNIQMSAEEDKLPFLISLQATEASHFSLL 130
Query: 356 MNNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRS-RSPTLVDLSDASTESN 532
M NL+ LEK F+DSD++ LERDIL QL+RLGAL LFH LSR+ +S TL+DLSD E
Sbjct: 131 MKNLDKLEKMFSDSDVITLERDILQQLKRLGALRLFHTCLSRALKSSTLLDLSDGPMELV 190
Query: 533 EELRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLSKTNXXXXXXXXXXXXXXLKYNG 712
EE R+N+ V + ++VV SG L K N K +
Sbjct: 191 EETRINEPVTDHEGKVVVQSG---KKEQRRLRRKRALEKGNDSSMLEFSSKTIPGNKISS 247
Query: 713 R---------KPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKK 865
R K KIT+NE EM GV+L+A LE++R +LEEETGQ SL+SWAEAA V+KK
Sbjct: 248 RRRHLITRKKKLKITKNEAEMSSGVKLVADLEKVRTMLEEETGQVGSLNSWAEAARVEKK 307
Query: 866 TLQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTR 1045
TLQQ LH GW CR E+LRST+SL+V++A+NYR +GVAF+DLIQAG +GVLQGAERFD +R
Sbjct: 308 TLQQRLHHGWQCRDELLRSTRSLVVFIAKNYRGLGVAFEDLIQAGNFGVLQGAERFDQSR 367
Query: 1046 GYKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEI 1225
GYKFSTY+QYWIRKSM MLV R+ARGVRIPF L+K IN++QKARK+L + GK+PDD EI
Sbjct: 368 GYKFSTYVQYWIRKSMSMLVARHARGVRIPFMLSKVINQVQKARKSLRSSHGKHPDDTEI 427
Query: 1226 ARFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKD 1405
A+FTGLS+AKI SA KCLRVVGS+DQK+G+ SAK+LE+ PDTSI SPEETV+ Q MI+
Sbjct: 428 AKFTGLSIAKITSASKCLRVVGSIDQKLGEGISAKYLEVMPDTSIMSPEETVMRQQMIEG 487
Query: 1406 LNNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRER-E 1582
+ LLN LE +ERQV++LRFG+ +Q SL+EIGRLFCVSKEWIRKIERTALTKLR+
Sbjct: 488 VYTLLNGLETRERQVVILRFGVGNYQRKSLEEIGRLFCVSKEWIRKIERTALTKLRKNGN 547
Query: 1583 TLRSLNHYL 1609
+L++L+HYL
Sbjct: 548 SLQNLSHYL 556
>ref|XP_012857954.1| PREDICTED: RNA polymerase sigma factor sigC [Erythranthe guttata]
Length = 562
Score = 545 bits (1405), Expect = 0.0
Identities = 297/548 (54%), Positives = 381/548 (69%), Gaps = 12/548 (2%)
Frame = +2
Query: 5 SVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQT 184
SVQSP T++ WPTS S RG + SY AR S SVI G++ET+ + H S+ Q
Sbjct: 13 SVQSPLSTSTSSWPTSSSCRGRDSSYFLARSSAASVIYGDTETLNDTSRGIHVYPSSHQL 72
Query: 185 VSNDY-SDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLMN 361
+ N Y +Q+KV + K S +Y++++ +IQ+P ED+ LTS+QA + R+LM
Sbjct: 73 LENYYLGGAKQLKVALGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQATQASKLRLLMK 132
Query: 362 NLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRS-RSPTLVDLSDASTESNEE 538
NL++LE FADS+ VRLE DIL QLERLGAL LFH+ LSR+ +S T DLSD TE EE
Sbjct: 133 NLDVLEDMFADSNAVRLEGDILEQLERLGALRLFHSCLSRTIKSYTSFDLSDGPTEIVEE 192
Query: 539 L-RMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLSKTNXXXXXXXXXXXXXXLKYN-- 709
R+N VD + ++ VHSG S T LK+
Sbjct: 193 CARVNDSVDNHLGKVFVHSGKKELRKLRRKRTSDNESPTIQESPSKTISKDLQQLKFAIA 252
Query: 710 GRKP-------KITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKT 868
GR P K RNE +M GV+ +A+LE+IR LE+ETGQ ASLS+WAEAAG+ KK
Sbjct: 253 GRTPRSRNKRQKTARNEADMSSGVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKE 312
Query: 869 LQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRG 1048
LQQ+LH+GW+CR E+LRST SL++++ARNY +GVAF+DLIQAG GVLQGAERFD +RG
Sbjct: 313 LQQHLHYGWHCRDELLRSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRG 372
Query: 1049 YKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIA 1228
YKFSTY+QYWIRKSM LV ++ARGVRIP L+K IN++ KARK L GKYPDD EIA
Sbjct: 373 YKFSTYVQYWIRKSMSTLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIA 432
Query: 1229 RFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDL 1408
+FTGLS+AK+ SA KCLRVVGS+DQKIG++ + K++E+ DTS+ SPEE VI QHM+ D+
Sbjct: 433 KFTGLSVAKVMSASKCLRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDV 492
Query: 1409 NNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETL 1588
+ LLN LEP+E+QV++LRFGL QC SL+EIGRLF VSKEWIRKIER+AL KLR ++L
Sbjct: 493 STLLNGLEPREKQVIILRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSL 552
Query: 1589 RSLNHYLN 1612
+ LNHY++
Sbjct: 553 KILNHYVH 560
>ref|XP_023891394.1| RNA polymerase sigma factor sigC [Quercus suber]
gb|POE61975.1| rna polymerase sigma factor sigc [Quercus suber]
Length = 572
Score = 545 bits (1405), Expect = 0.0
Identities = 293/560 (52%), Positives = 386/560 (68%), Gaps = 23/560 (4%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQ 181
F +QS SLTNS +S RG E S + R SF SVIS ESET Y DPL+A CS+AA
Sbjct: 13 FPIQSHSLTNSPSRLSSSYVRGKEASLNLTRQSFVSVISEESETFYKDPLKADICSAAAP 72
Query: 182 TVS-NDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLM 358
+ N++S+ E +K N+RKRS + N+I+D Q+P E + T TSLQ GK +F +L+
Sbjct: 73 LFTENNFSEVEDMKKNIRKRSYSSLRNLIDDT-QVPVEEGKFTSCTSLQGGKEANFNLLI 131
Query: 359 NNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRS-RSPTLVDLSDASTESNE 535
NL++LE+TF DSD++RLERDI+ QL RLGA+NLF+ LSR+ ++ L+DLSD T+ E
Sbjct: 132 ENLHVLEETFVDSDVLRLERDIMQQLGRLGAINLFNTCLSRTVQNSNLLDLSDIPTDYTE 191
Query: 536 ELRMNK-----------HVDESMAEIVVHSGXXXXXXXXXXXXXXXLSKTNXXXXXXXXX 682
+ +K D+ + ++VV S +T+
Sbjct: 192 HEKKSKTDEHAEDEMKGKTDDCIGKVVVRSRKKRGRKSRGKKTLENACETSLLLLPSKII 251
Query: 683 XXXXXL----------KYNGRKPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLS 832
R+ KI+RNE EM GV+++A LERIR LEEETG+ A++S
Sbjct: 252 QQRFGQPNVSSAKRASSSRSRRLKISRNEAEMSTGVKVVANLERIRRTLEEETGRVATIS 311
Query: 833 SWAEAAGVDKKTLQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGV 1012
WAEAAG+D+K LQQNLHFGWYCR E++RST+SL++YLARNYR +G+A +DLIQAG GV
Sbjct: 312 CWAEAAGLDEKVLQQNLHFGWYCRDEIIRSTRSLVLYLARNYRGLGIALEDLIQAGNLGV 371
Query: 1013 LQGAERFDHTRGYKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCN 1192
LQGAERFDHTRGY+FSTY+QYWIRKSM +V ++ARG++IP+ L AIN+IQKA+ L +
Sbjct: 372 LQGAERFDHTRGYRFSTYVQYWIRKSMSRMVAQHARGIQIPYTLCSAINQIQKAKTALNS 431
Query: 1193 RQGKYPDDDEIARFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPE 1372
KYPDDDEIA+ TGLSLAKI SA KCLRVVGS+DQK+G + K++E+TPD S+KSPE
Sbjct: 432 GHKKYPDDDEIAKHTGLSLAKIRSASKCLRVVGSIDQKMGHCINIKYMEVTPDMSVKSPE 491
Query: 1373 ETVIWQHMIKDLNNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIER 1552
ETV+ QHMIKD+ +LL L+ +ERQ L LRFGL+ +Q SL+E GRL CV+KEW+RKIE+
Sbjct: 492 ETVMRQHMIKDIRDLLRGLDSRERQALFLRFGLQDNQPKSLEESGRLLCVTKEWMRKIEK 551
Query: 1553 TALTKLRERETLRSLNHYLN 1612
ALTKLR+ + R+L+HYL+
Sbjct: 552 KALTKLRDEDICRNLSHYLD 571
>ref|XP_018837561.1| PREDICTED: RNA polymerase sigma factor sigC-like isoform X1 [Juglans
regia]
Length = 556
Score = 528 bits (1359), Expect = e-180
Identities = 288/543 (53%), Positives = 376/543 (69%), Gaps = 7/543 (1%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAA- 178
F +QS S +NS F +S RG E S++S R S SVIS ES+ Y DP +A + S A
Sbjct: 13 FPIQSHSPSNSPFRISSSYVRGKEASFNSTRQSLMSVISDESDKFYKDPQQASTSSLAVP 72
Query: 179 QTVSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLM 358
Q N++S+ E +K N+RKR+ +++II D ++P E++ T TSLQA K HF LM
Sbjct: 73 QFKENNFSELEDMKENIRKRTFSNLHDIIED-AKVPVKENKFTSSTSLQACKATHFNSLM 131
Query: 359 NNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRSRS-PTLVDLSDASTESNE 535
NL++LE+TF DSD++RLE+DIL+QL RLGA+NLF+ LSRS +DL D ++
Sbjct: 132 ENLHILEETFVDSDVIRLEKDILLQLGRLGAINLFYTCLSRSLEISNFLDLVDIPSQHIG 191
Query: 536 ELRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXX-LSKTNXXXXXXXXXXXXXXLKYNG 712
E +M D+ + + VV SG LS + +K
Sbjct: 192 EHKMRSVKDDHIGKKVVRSGKMKERKSRTRTLENAPLSLPSKVNQKHFGKPTVSSVKRGS 251
Query: 713 R----KPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKTLQQN 880
R + KI RNE EM RGV+++A LERIR+ LE ETG+ ASLS WAEAAG+D+K LQQ+
Sbjct: 252 RSRIRRLKIARNEAEMSRGVKVVANLERIRITLEAETGRVASLSCWAEAAGLDEKVLQQH 311
Query: 881 LHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRGYKFS 1060
LHFGW CR E++RST+SL++YLARNYR +G+A +DL+QAG GVLQGAERFDHTRGY+FS
Sbjct: 312 LHFGWCCRDELIRSTRSLVLYLARNYRGLGIALEDLLQAGNLGVLQGAERFDHTRGYRFS 371
Query: 1061 TYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIARFTG 1240
TY+QYWIRKSM +V ++ARG++IP+ L++AIN I KARK L GKYP DD+I+++TG
Sbjct: 372 TYVQYWIRKSMSRMVAQHARGIQIPYTLSRAINLIVKARKDLNRTHGKYPGDDDISKYTG 431
Query: 1241 LSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDLNNLL 1420
LSLAKI SAGKCLRV+GS+DQKIGD + ++ E+ PD SI+SPEETV QHM K+++NLL
Sbjct: 432 LSLAKIRSAGKCLRVIGSIDQKIGDHNNLQYREVMPDLSIRSPEETVTRQHMRKEIHNLL 491
Query: 1421 NALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETLRSLN 1600
+L+ +ERQVL LR+GL Q SL+E GRL VSKEWIRKIER AL +LR E RSL+
Sbjct: 492 KSLDSRERQVLFLRYGLEDCQPKSLEETGRLLHVSKEWIRKIERKALARLRNEEIRRSLS 551
Query: 1601 HYL 1609
HYL
Sbjct: 552 HYL 554
>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC isoform X2 [Solanum
tuberosum]
Length = 555
Score = 520 bits (1338), Expect = e-176
Identities = 286/547 (52%), Positives = 368/547 (67%), Gaps = 12/547 (2%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQ 181
FSVQ P +NS WP+S+SF+G E YD AR S I+G+ E ++DP R +C S Q
Sbjct: 11 FSVQPPFSSNSSSWPSSHSFKGREALYDPAR-SLKPFITGDCEPSHSDPFRVQTCLSDPQ 69
Query: 182 TVSNDYSDTEQIKVNVRKRSCGGIYNIINDN-IQMPAGEDQSTFLTSLQAGKTLHFRVLM 358
++D S T +IK + S +Y I + I + ++ T+L + K+LHF +LM
Sbjct: 70 LWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEKPTYLNTT---KSLHFSLLM 126
Query: 359 NNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRSR-SPTLVDLSDASTESNE 535
NL++LE FADS+M RLERDILVQLE+LGAL FH LSR+ S T + D E +
Sbjct: 127 KNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFPKVLDVPRELIK 186
Query: 536 ELRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLSK--TNXXXXXXXXXXXXXXLKYN 709
E+ + V ++ ++VV S + T Y+
Sbjct: 187 EVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNIQEDLQQPKFYS 246
Query: 710 GRKP--------KITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKK 865
G++ KI +NE EM RGV+L+A+LERIR ILEEETG+ A+ SSWAEAAG+++K
Sbjct: 247 GKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATFSSWAEAAGIEQK 306
Query: 866 TLQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTR 1045
LQQ LHFGWYCR E+L+ST+SL++YLARNYR +GVAF+DLIQAG GVLQGA RFDHTR
Sbjct: 307 ELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTR 366
Query: 1046 GYKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEI 1225
GYKFSTY+QYWIRKS+ LV ++ARGVRIPF + K IN+I KARKTL GK+P DDEI
Sbjct: 367 GYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEI 426
Query: 1226 ARFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKD 1405
A+FTGLS A+IA A KCLRVVGS+DQK+GD SAK LELTPD SI SPEETV+ Q ++ +
Sbjct: 427 AKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPEETVMRQDIVDN 486
Query: 1406 LNNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERET 1585
+ +LL +L+PKE+QV+ RFGL HQ SL+EIGRL+ VSKEWIR+IER ALTKLR +
Sbjct: 487 MYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRNADY 546
Query: 1586 LRSLNHY 1606
+ + HY
Sbjct: 547 FQHITHY 553
>emb|CDP08205.1| unnamed protein product [Coffea canephora]
Length = 599
Score = 518 bits (1334), Expect = e-175
Identities = 277/527 (52%), Positives = 364/527 (69%), Gaps = 10/527 (1%)
Frame = +2
Query: 62 RGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQTVSNDYSDTEQIKVNVRKRS 241
+G E Y+SA++S SV G++ T +DP+R CSSA Q ND S+TE ++ V + S
Sbjct: 72 KGWEAVYESAKMSSFSVAYGDTTTWLSDPMRVKMCSSATQARENDNSETEDMEDAVSRWS 131
Query: 242 CGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLMNNLNMLEKTFADSDMVRLERD 421
G N+ +++I + S +L SL+ K LHF +LM NL++LE+T ADS ++RLE D
Sbjct: 132 YHGSCNMAHNDISSSRENNNSIYLASLRNTKALHFGLLMKNLDVLEETIADSGVLRLEED 191
Query: 422 ILVQLERLGALNLFHAFLSRSRSP-TLVDLSDASTESNEELRMNKHVDESMAEIVVHS-- 592
ILVQLERLGAL LF L R P TL DLSD +T+ E ++N V++ + + VVHS
Sbjct: 192 ILVQLERLGALELFQTCLCRMLKPSTLYDLSDKATKPVEASQINCPVEDVVGKKVVHSVK 251
Query: 593 -------GXXXXXXXXXXXXXXXLSKTNXXXXXXXXXXXXXXLKYNGRKPKITRNETEML 751
S T R KI R E EM
Sbjct: 252 KEKRKSRRKRPLDKGNGKFMQEKYSSTLEDAQQVEFSPGRKSSDSRSRSLKIARTEAEMS 311
Query: 752 RGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKTLQQNLHFGWYCRSEVLRSTQS 931
+GV+L+++LERIR I+EE TGQ +S+WAEAA V+ + LQQ+L FGWYCR E+LRST+S
Sbjct: 312 QGVKLVSELERIRTIVEENTGQVVGMSNWAEAAQVNIQVLQQHLQFGWYCRDELLRSTRS 371
Query: 932 LIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRGYKFSTYIQYWIRKSMLMLVER 1111
L++Y+ARNYR +GVAF+DL+QAG GVLQGA+RFDHTRGYKFSTY+QYWIRKS+ M+V +
Sbjct: 372 LVLYIARNYRGLGVAFEDLVQAGNLGVLQGAQRFDHTRGYKFSTYVQYWIRKSISMVVAQ 431
Query: 1112 NARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIARFTGLSLAKIASAGKCLRVVG 1291
+ARG+RIP +L+KAI++IQKARK L + GKYPD +EIA+FTGLS AKI S KCLR+VG
Sbjct: 432 HARGIRIPSSLSKAISQIQKARKALKSSHGKYPDVNEIAKFTGLSTAKIMSVSKCLRIVG 491
Query: 1292 SLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDLNNLLNALEPKERQVLLLRFGL 1471
S+DQK+GD +SAK LEL DTS++SPEETV+ QHM++ + L+ LEP+ERQVL+LRFGL
Sbjct: 492 SIDQKVGDSSSAKRLELISDTSMRSPEETVVRQHMLQGMYGLMKDLEPRERQVLVLRFGL 551
Query: 1472 RGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETLRSLNHYLN 1612
R HQ SL+EIGRL+ VSKEW+RKIER ALTKLR+ + + L+ Y+N
Sbjct: 552 RSHQRKSLEEIGRLYSVSKEWVRKIERRALTKLRKNDVFQDLSQYMN 598
>ref|XP_009757464.1| PREDICTED: RNA polymerase sigma factor sigC isoform X2 [Nicotiana
sylvestris]
ref|XP_016482950.1| PREDICTED: RNA polymerase sigma factor sigC-like isoform X2
[Nicotiana tabacum]
Length = 554
Score = 512 bits (1318), Expect = e-173
Identities = 281/546 (51%), Positives = 365/546 (66%), Gaps = 11/546 (2%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQ 181
FSVQ P +NS WP+S+SF+G E YD AR S I+G+ E ++DP R +C S Q
Sbjct: 11 FSVQPPFSSNSSAWPSSHSFKGKEALYDPAR-SLKPFINGDCEPSHSDPFRVRTCLSDPQ 69
Query: 182 TVSNDYSDTEQIKVNVRKRSCGGIYNII-NDNIQMPAGEDQSTFLTSLQAGKTLHFRVLM 358
++D S T +IK + + S IY I +D + ++ ++L++ +A HF +LM
Sbjct: 70 LWTSDISVTTEIKTRIGRGSPSNIYGDIGSDKTGISPDGEKPSYLSTTRAP---HFSLLM 126
Query: 359 NNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRSRSPTLVDLSDASTESNEE 538
N+++LE FADS+M RLE DILVQLE+LGAL FH+ LSR+ T ++ D E EE
Sbjct: 127 KNIDLLENMFADSEMSRLENDILVQLEKLGALEFFHSRLSRTLHSTSPEVLDVPRELVEE 186
Query: 539 LRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLSK--TNXXXXXXXXXXXXXXLKYNG 712
+ + V + ++VV S + T Y+G
Sbjct: 187 IEKDDLVGNGIDKVVVRSRKKQERNSRRNRASGIANDIITVHPHTKNIQEDMQQPKFYSG 246
Query: 713 RKP--------KITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKT 868
++ KI +NE EM RGV+L+A+LERIR ILEEETG+ AS SSWAEAAGV++K
Sbjct: 247 KRTHASRNKRQKIAKNEAEMSRGVKLVAELERIRSILEEETGRVASFSSWAEAAGVEQKE 306
Query: 869 LQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRG 1048
LQ +LHFGWYCR E+L+ST+SL++YLARNYR +GVAF+DLIQAG GVLQGA RFD TRG
Sbjct: 307 LQHHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDDTRG 366
Query: 1049 YKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIA 1228
YKFSTY+QYWIRKS+ LV ++ARG+RIPF + KAIN+I KARK L GK+P D+EIA
Sbjct: 367 YKFSTYVQYWIRKSLSKLVAQHARGIRIPFTICKAINQIHKARKALSRSHGKFPGDNEIA 426
Query: 1229 RFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDL 1408
++TGLS A+IA A KCLRVVGS+DQK+G SAK LELTPD SI SPEETVI + +I ++
Sbjct: 427 KYTGLSTARIAMASKCLRVVGSIDQKVGHCISAKVLELTPDKSIVSPEETVIREDIIDNM 486
Query: 1409 NNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETL 1588
LL +L+PKE+QV+ RFGL HQ SL+EIGRL+ VSKEWIR+IER ALTKLR +
Sbjct: 487 YALLESLDPKEQQVIYFRFGLENHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRSADCF 546
Query: 1589 RSLNHY 1606
+ L HY
Sbjct: 547 QDLTHY 552
>ref|XP_015085648.1| PREDICTED: RNA polymerase sigma factor sigC [Solanum pennellii]
Length = 551
Score = 511 bits (1315), Expect = e-173
Identities = 281/546 (51%), Positives = 364/546 (66%), Gaps = 11/546 (2%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQ 181
FS+Q P +NS WP+S+SF+G E YD AR S I+G+ E ++DP R +C S Q
Sbjct: 11 FSLQPPFSSNSSSWPSSHSFKGRETLYDPAR-SLKPFINGDCEPSHSDPFRVQTCLSDPQ 69
Query: 182 TVSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLMN 361
++D S T + K + S +Y I ++ T++ + K+LHF +LM
Sbjct: 70 LWTSDASVTIETKTRNGRGSPSNVYGDIGS---YKIDGEKPTYINTT---KSLHFSLLMK 123
Query: 362 NLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRSR-SPTLVDLSDASTESNEE 538
NL++LE FADS+M RLERDILVQLE+LGAL FH LSR+ S T + D E +E
Sbjct: 124 NLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFPKVLDVPRELIKE 183
Query: 539 LRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLSK--TNXXXXXXXXXXXXXXLKYNG 712
+ + V +M ++VV S + T Y+G
Sbjct: 184 VEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQEDLQQPKFYSG 243
Query: 713 RKP--------KITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKT 868
++ KI +NE EM +GV+L+A+LERIR ILEEETG+ A+ SSWAEAAG+++K
Sbjct: 244 KRTHASRNKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGRVATFSSWAEAAGIEQKE 303
Query: 869 LQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRG 1048
LQQ+LHFGWYCR E+L+ST+SL++YLARNYR +GVAF+DLIQAG GVLQGA RFDHTRG
Sbjct: 304 LQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRG 363
Query: 1049 YKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIA 1228
YKFSTY+QYWIRKS+ LV ++ARGVRIPF + K IN+I KARKTL GK+P DDEIA
Sbjct: 364 YKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIA 423
Query: 1229 RFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDL 1408
+FTGLS A+IA A KCLRVVGS+DQK+GD SAK LELTPD S+ SPEETV+ Q ++ ++
Sbjct: 424 KFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSVTSPEETVMRQDIVDNM 483
Query: 1409 NNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETL 1588
LL +L+PKE+QV+ RFGL HQ SL+EIGRL+ VSKEWIR+IER ALTKLR +
Sbjct: 484 YALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRSADYF 543
Query: 1589 RSLNHY 1606
+ + HY
Sbjct: 544 QHITHY 549
>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Solanum
lycopersicum]
Length = 551
Score = 507 bits (1305), Expect = e-172
Identities = 280/546 (51%), Positives = 364/546 (66%), Gaps = 11/546 (2%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQ 181
FS+Q P +NS WP+S+SF+G E YD AR S I+G+ E ++DP R +C S Q
Sbjct: 11 FSLQPPFSSNSSSWPSSHSFKGRETLYDPAR-SLKPFINGDCEPSHSDPFRVQTCLSDPQ 69
Query: 182 TVSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLMN 361
++D S T + K + S +Y I ++ T+L + K+LHF +LM
Sbjct: 70 LWTSDASVTTETKTRNGRGSPSNVYGDIGS---YKIDGEKPTYLNTT---KSLHFSLLMK 123
Query: 362 NLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRSR-SPTLVDLSDASTESNEE 538
NL++LE FADS+M RLERDILVQLE+LGAL FH LSR+ S + + D E +E
Sbjct: 124 NLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSSFPKVLDVPRELIKE 183
Query: 539 LRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLSKT-NXXXXXXXXXXXXXXLK-YNG 712
+ + V +M ++VV S + LK Y+G
Sbjct: 184 VEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQEDLQQLKFYSG 243
Query: 713 RKP--------KITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKT 868
++ KI +NE EM +GV+L+A+LERIR ILEEETGQ A+ SSWA+AAG+++K
Sbjct: 244 KRTHASRTKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGQVATFSSWAKAAGIEQKE 303
Query: 869 LQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRG 1048
LQQ+LHFGWYCR E+L+ST+SL++YLARNYR +GVAF+DLIQAG GVLQGA RFDHTRG
Sbjct: 304 LQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRG 363
Query: 1049 YKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIA 1228
YKFSTY+QYWIRKS+ LV ++ARGVRIPF + K IN+I KARKTL GK+P DDEIA
Sbjct: 364 YKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIA 423
Query: 1229 RFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDL 1408
+FTGLS A+IA A KCLRVVGS+DQK+GD +AK LELTPD S+ SPEE V+ Q ++ ++
Sbjct: 424 KFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTSPEEFVMRQDIVDNM 483
Query: 1409 NNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETL 1588
LL +L+PKE+QV+ RFGL HQ SL+EIGRL+ VSKEWIR+IER ALTKLR +
Sbjct: 484 YALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRSADYF 543
Query: 1589 RSLNHY 1606
+ + HY
Sbjct: 544 QHITHY 549
>ref|XP_009623296.1| PREDICTED: RNA polymerase sigma factor sigC [Nicotiana
tomentosiformis]
Length = 572
Score = 507 bits (1305), Expect = e-171
Identities = 283/548 (51%), Positives = 363/548 (66%), Gaps = 13/548 (2%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQ 181
FSVQ P +NS WP+S+SF+G E YD AR S I+ + E ++DP R +C S Q
Sbjct: 28 FSVQPPFSSNSSSWPSSHSFKGKEALYDPAR-SLKPFINEDCEPSHSDPFRVRTCLSDPQ 86
Query: 182 TVSNDYSDTEQIKVNVRKRSCGGIYNIIND--NIQMPAGEDQSTFLTSLQAGKTLHFRVL 355
++D S T +IK + + S IY I N+ GE + T+L + +A LHF +L
Sbjct: 87 LWTSDTSVTTEIKTRIGRGSPTNIYGDIGSPKNVISLDGE-KPTYLNTTRA---LHFSLL 142
Query: 356 MNNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRSRS-PTLVDLSDASTESN 532
M NL++LE FADS++ RLERDI+VQL++LGAL FH LSR+ T ++ D E
Sbjct: 143 MKNLDLLENMFADSEVSRLERDIMVQLDKLGALEFFHTCLSRTNHCSTFPEVLDVPRELI 202
Query: 533 EELRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLSKT--------NXXXXXXXXXXX 688
EE+ + V + ++VV S + N
Sbjct: 203 EEIEKDGLVGNGIDKVVVRSKKKQERKSRRNRASRNANDIITVQPHTKNIQEDLQQPKFF 262
Query: 689 XXXLKYNGR--KPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDK 862
+ R + KI +NE EM RGV+L+A+LERIR ILEEETG+ AS SSWAEAAGV++
Sbjct: 263 SGKRTHTSRNKRQKIAKNEAEMSRGVKLVAELERIRSILEEETGRVASFSSWAEAAGVEQ 322
Query: 863 KTLQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHT 1042
K LQQ LHFGWYCR E+L+ST+SL++YLARNYR +GVAF+DLIQAG GVLQGA RFD T
Sbjct: 323 KELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDDT 382
Query: 1043 RGYKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDE 1222
RGYKFSTY+QYWIRKS+ LV ++ARG+RIPF + KAIN+I KARK L GK+P DDE
Sbjct: 383 RGYKFSTYVQYWIRKSLSKLVAQHARGIRIPFTICKAINQIHKARKALSRSHGKFPGDDE 442
Query: 1223 IARFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIK 1402
IA++TGLS A+IA A KCLRVVGS+DQK+GD SAK +ELTPD SI SPEETVI + +I
Sbjct: 443 IAKYTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVMELTPDKSIISPEETVIREDIID 502
Query: 1403 DLNNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERE 1582
++ LL +L+PKE+QV+ RFGL HQ SL+EIGRL+ VSKEWIR+IER AL+KLR +
Sbjct: 503 NMYALLESLDPKEQQVVYFRFGLENHQRKSLEEIGRLYGVSKEWIRRIERRALSKLRSAD 562
Query: 1583 TLRSLNHY 1606
+ L HY
Sbjct: 563 CFQDLTHY 570
>ref|XP_019263762.1| PREDICTED: RNA polymerase sigma factor sigC [Nicotiana attenuata]
gb|OIT36910.1| rna polymerase sigma factor sigc [Nicotiana attenuata]
Length = 555
Score = 506 bits (1302), Expect = e-171
Identities = 279/547 (51%), Positives = 364/547 (66%), Gaps = 12/547 (2%)
Frame = +2
Query: 2 FSVQSPSLTNSVF-WPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAA 178
FSVQ P NS WP+S+SF+G E YD AR S I+G+ E ++DP R +C S
Sbjct: 11 FSVQPPFSPNSASAWPSSHSFKGKEALYDPAR-SLKPFINGDCEPSHSDPFRVRTCLSDP 69
Query: 179 QTVSNDYSDTEQIKVNVRKRSCGGIYNII-NDNIQMPAGEDQSTFLTSLQAGKTLHFRVL 355
Q ++D S T +IK + + S IY I +D I + ++ +L + +A HF +L
Sbjct: 70 QLWTSDISVTTEIKTRIGRGSPSNIYGDIGSDKIGISPDGEKPLYLNTTRAP---HFSLL 126
Query: 356 MNNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRSRSPTLVDLSDASTESNE 535
M N+++LE FADS+M RLE +ILVQLE+LGAL FH+ LSR+ T ++ D + E
Sbjct: 127 MKNIDLLENMFADSEMSRLENNILVQLEKLGALEFFHSRLSRTLHSTFPEVLDVPRDLIE 186
Query: 536 ELRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLSK--TNXXXXXXXXXXXXXXLKYN 709
E+ + V + ++VV S + T Y+
Sbjct: 187 EIEKDDLVGNGINKVVVRSRKKQERKSRRNRASGIANDIITVHPHTKNIQEDMQQPKFYS 246
Query: 710 GRKP--------KITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKK 865
G++ KI +NE EM RGV+L+A+LERIR ILEEETG+ AS SSWAEAAGV++K
Sbjct: 247 GKRTHASRNKRQKIAKNEAEMSRGVKLVAELERIRSILEEETGRVASFSSWAEAAGVEQK 306
Query: 866 TLQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTR 1045
LQ +LHFGWYCR E+L+ST+SL++YLARNYR +GVAF+DLIQAG GVLQGA RFD TR
Sbjct: 307 ELQHHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDDTR 366
Query: 1046 GYKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEI 1225
GYKFSTY+QYWIRKS+ LV ++ARG+RIPF + KAIN+I KARK L GK+P D+EI
Sbjct: 367 GYKFSTYVQYWIRKSLSKLVAQHARGIRIPFTICKAINQIHKARKALSRSHGKFPGDNEI 426
Query: 1226 ARFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKD 1405
A++TGLS A+IA A KCLRVVGS+DQK+GD SAK LELTPD SI SPEE+V+ + +I +
Sbjct: 427 AKYTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSIVSPEESVMREDIIDN 486
Query: 1406 LNNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERET 1585
+ LL +L+PKE+QV+ RFGL HQ SL+EIGRL+ VSKEWIR+IER ALTKLR +
Sbjct: 487 MYALLESLDPKEQQVIYFRFGLENHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRSADC 546
Query: 1586 LRSLNHY 1606
+ L HY
Sbjct: 547 FQDLTHY 553
>ref|XP_016487978.1| PREDICTED: RNA polymerase sigma factor sigC-like [Nicotiana tabacum]
Length = 572
Score = 503 bits (1294), Expect = e-170
Identities = 279/547 (51%), Positives = 360/547 (65%), Gaps = 12/547 (2%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQ 181
FSVQ P +NS WP+S+S +G E YD AR S I+ + E ++DP R +C S Q
Sbjct: 28 FSVQPPFSSNSSSWPSSHSLKGKEALYDPAR-SLKPFINEDCEPSHSDPFRVRTCLSDPQ 86
Query: 182 TVSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQ-MPAGEDQSTFLTSLQAGKTLHFRVLM 358
++D S T +IK + + S IY I + ++ T+L + +A LHF +LM
Sbjct: 87 LWTSDTSVTTEIKTRIGRGSPTNIYGDIGSPKNGITLDGEKPTYLNTTRA---LHFSLLM 143
Query: 359 NNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRSRS-PTLVDLSDASTESNE 535
NL++LE FADS++ RLERDI+VQL++LGAL FH LSR+ T ++ D E E
Sbjct: 144 KNLDLLENMFADSEVSRLERDIMVQLDKLGALEFFHTCLSRTNHCSTFPEVLDVPRELIE 203
Query: 536 ELRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLSKT--------NXXXXXXXXXXXX 691
E+ + V + ++VV S + N
Sbjct: 204 EIEKDGLVGNGIDKVVVRSKKKQERKSRRNRASRNANDIITVQPHTKNIQEDLQQPKFFS 263
Query: 692 XXLKYNGR--KPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKK 865
+ R + KI +NE EM RGV+L+A+LERIR ILEEETG+ AS SSWAEAAGV++K
Sbjct: 264 GKRTHTSRNKRQKIAKNEAEMSRGVKLVAELERIRSILEEETGRVASFSSWAEAAGVEQK 323
Query: 866 TLQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTR 1045
LQQ LHFGWYCR E+L+ST+SL++YLARNYR +GVAF+DLIQAG GVLQGA RFD TR
Sbjct: 324 ELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDDTR 383
Query: 1046 GYKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEI 1225
GYKFSTY+QYWIRKS+ LV ++ARG+RIPF + KAIN+I KARK L GK+P DDEI
Sbjct: 384 GYKFSTYVQYWIRKSLSKLVAQHARGIRIPFTICKAINQIHKARKALSRSHGKFPGDDEI 443
Query: 1226 ARFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKD 1405
A++TGLS A+IA A KCLRVVGS+DQK+GD SAK +ELTPD SI SPEETVI + +I +
Sbjct: 444 AKYTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVMELTPDKSIISPEETVIREDIIDN 503
Query: 1406 LNNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERET 1585
+ LL +L+PKE+QV+ RFGL HQ SL+EIGRL+ VSKEWIR+IER AL+KLR +
Sbjct: 504 MYALLESLDPKEQQVVYFRFGLENHQRKSLEEIGRLYGVSKEWIRRIERRALSKLRSADC 563
Query: 1586 LRSLNHY 1606
+ L HY
Sbjct: 564 FQDLTHY 570
>gb|AKC88685.1| sigma factor [Francoa sonchifolia]
Length = 540
Score = 501 bits (1290), Expect = e-169
Identities = 279/546 (51%), Positives = 362/546 (66%), Gaps = 10/546 (1%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQ 181
F +QS SL NS S S RG E S +SAR+SF S+IS E ET+ ++A++CS AA+
Sbjct: 11 FPIQSHSLPNSPSRLCSSSVRGREASINSARLSFLSIISEEGETLRRVLVKAYACSFAAR 70
Query: 182 TVSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLMN 361
+ + ++++I+DN P E +ST S++A K HFR+L+
Sbjct: 71 QMLEKEN----------------LHSMIDDN---PTEEGKSTSQMSVEARKASHFRLLVQ 111
Query: 362 NLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRSRSPTLVDLSDASTESNEEL 541
NL++LEKTFADS ++RLE DIL+QLERLGA NLF LS++ + DLS+ E EE
Sbjct: 112 NLDVLEKTFADSSVLRLESDILLQLERLGARNLFDTCLSKTLEDSN-DLSNVPIEHMEEQ 170
Query: 542 RMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLSKTNXXXXXXXXXXXXXXLKYN---- 709
+ +D+ + +I V S SK + +
Sbjct: 171 KTVIAMDDQIGKIFVCSRKKEERKSKRARASENASKISSMPLRSKTARKGYQQPAHSSSK 230
Query: 710 ------GRKPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKTL 871
GR+ I RNE EM RGV+++ LERIR LE+ETG+ SLS+WAEAAG+D+K L
Sbjct: 231 RGSNSRGRRLMIARNEAEMSRGVKVIQDLERIRTTLEKETGRVVSLSTWAEAAGIDEKVL 290
Query: 872 QQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRGY 1051
Q+L +GWYCR E+LRST+SL++YLARNYR +G+A +DL+QAG+ GVLQGAERFDHTRGY
Sbjct: 291 NQDLRYGWYCRDELLRSTRSLVLYLARNYRGLGIASEDLLQAGKLGVLQGAERFDHTRGY 350
Query: 1052 KFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIAR 1231
K STY+QYWIRKSM +V ++ARGV+IP+ L++ IN++QKARK L N GKYPDD EIA+
Sbjct: 351 KLSTYVQYWIRKSMSRMVAQHARGVQIPYTLSRVINRVQKARKALSNSHGKYPDDAEIAK 410
Query: 1232 FTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDLN 1411
TG+SL KI SA KCLRVVGS+DQK+ K++ELTPD SI PEETVI QHMIKDL
Sbjct: 411 ATGISLEKIRSAKKCLRVVGSIDQKMEGCFGVKYMELTPDISIPCPEETVIRQHMIKDLY 470
Query: 1412 NLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETLR 1591
N L L+ +E QVL+LR+GL H SL+EIGRLFCVSKEWIR++E+ ALT LR+ ET R
Sbjct: 471 NHLQGLDQREMQVLILRYGLNNHHPKSLEEIGRLFCVSKEWIRRVEKKALTNLRKEETRR 530
Query: 1592 SLNHYL 1609
SL HYL
Sbjct: 531 SLIHYL 536
>gb|KDP34138.1| hypothetical protein JCGZ_07709 [Jatropha curcas]
Length = 564
Score = 501 bits (1291), Expect = e-169
Identities = 271/551 (49%), Positives = 381/551 (69%), Gaps = 14/551 (2%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAA- 178
F V SPS +S + + +G EGS + +R+SF SVIS E + ++ D L+ ++ SS+
Sbjct: 19 FHVNSPSRLSS----SPSAVKGREGSINISRLSFLSVISEEGDNLHRDHLKTNAYSSSGM 74
Query: 179 QTVSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLM 358
QT+ N++S E+ K++V KRS G+ + I+D Q+ ED +S + +T +F +L+
Sbjct: 75 QTLENEHSQVEEAKISVGKRSLSGLNDTIDD-AQVFIKEDDFVPPSSSK-DRTSNFSLLL 132
Query: 359 NNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRS---RSPTLVDLSDASTES 529
NLN+LE++FADSD+++LERDIL+QL +LGAL LF+ L+R+ ++ ++D SD TE+
Sbjct: 133 ENLNILEESFADSDVLKLERDILLQLGKLGALKLFNTCLTRTLEVQTANVLDFSDLPTEN 192
Query: 530 NEELRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLS----------KTNXXXXXXXX 679
+E + + + ++ +I+V +G K+
Sbjct: 193 IQECKRDGTSNGNVYKIIVCTGKKEERKSRRERASLKNGHKVPCFPLPLKSIQNGRGKAT 252
Query: 680 XXXXXXLKYNGRKPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVD 859
R+ I RNE EM RGV++LA LE+IR LE+ETG+A SLS WAEAAG+D
Sbjct: 253 SFDKKTSNSKSRRLMIARNEAEMSRGVKVLANLEKIRTTLEQETGRAVSLSCWAEAAGLD 312
Query: 860 KKTLQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDH 1039
K LQQ LHFGWYCR E++RST+SL+++LARNYR +G+A +DL+QAG GVLQGAERFD
Sbjct: 313 MKVLQQQLHFGWYCRDELVRSTRSLVLFLARNYRGMGIALEDLLQAGNMGVLQGAERFDD 372
Query: 1040 TRGYKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDD 1219
RGY+FSTY+QYWIRKSM +V R+ARG++IP L++AIN+IQKARK L GKYPDD+
Sbjct: 373 ARGYRFSTYVQYWIRKSMSKIVSRHARGIQIPCTLSRAINQIQKARKNLSASHGKYPDDE 432
Query: 1220 EIARFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMI 1399
+IA FTGLSLAKI SA +CLRVVGS+DQK+GD +AK+LE DT+IKSPEE V+ QHMI
Sbjct: 433 DIAEFTGLSLAKIESASRCLRVVGSIDQKMGDCFNAKYLEFIHDTTIKSPEEAVMRQHMI 492
Query: 1400 KDLNNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRER 1579
KD+++LL L+ +ERQVL+LR+GL+ HQ SL+EIGR+F VSKEW+R++E+ +T+LR
Sbjct: 493 KDMHDLLRGLDTRERQVLILRYGLKDHQPKSLEEIGRVFHVSKEWVRRLEKKVMTRLRNE 552
Query: 1580 ETLRSLNHYLN 1612
ET R+L +Y+N
Sbjct: 553 ETCRNLRYYVN 563
>gb|OMO86642.1| RNA polymerase sigma-70 [Corchorus olitorius]
Length = 555
Score = 500 bits (1287), Expect = e-169
Identities = 275/548 (50%), Positives = 364/548 (66%), Gaps = 11/548 (2%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQ 181
F V S L NS S G E S++S R+SF SV S E + +P +A++ S+ Q
Sbjct: 11 FPVPSHFLANSSPSRLPSSVGGREASFNSVRLSFLSVNSDEGVLLAKEPPKAYASSAVPQ 70
Query: 182 TVSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLMN 361
T+ N + E++KVN+ K G + D P +S+ TS QA H+ +LM
Sbjct: 71 TLENGCFEIEEMKVNIGK---GSQSHTKIDKTHEPIEGKKSSSRTSPQACNASHYSLLME 127
Query: 362 NLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRS-RSPTLVDLSDASTESNEE 538
NL++LE+TFADSD++ LER+I++QL RLGAL LF+ SR+ ++ +++DLSD S E
Sbjct: 128 NLDVLEETFADSDVLTLEREIMLQLGRLGALKLFNICFSRTIKASSVLDLSDVPASSGE- 186
Query: 539 LRMNKHVDESMAEIVVHS----------GXXXXXXXXXXXXXXXLSKTNXXXXXXXXXXX 688
N D +IVV S L +
Sbjct: 187 FNTNGSTDSQNDKIVVRSRKKKQRQRRRDKLLEKPTTVSSQVLPLKTLHGRLKMPNVSSG 246
Query: 689 XXXLKYNGRKPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKT 868
R+ I RNE EM +G++++A LERIR LEEETG+ SLS WAEAAGV++K
Sbjct: 247 KRVSDSRSRRLMIARNEAEMSQGIKVVANLERIRTTLEEETGKVVSLSCWAEAAGVNEKV 306
Query: 869 LQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRG 1048
LQQ LHFGWYCR E+LRST+SL++Y ARNYR +G+A +DLIQAG GVLQGAERFDHTRG
Sbjct: 307 LQQQLHFGWYCRDELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSIGVLQGAERFDHTRG 366
Query: 1049 YKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIA 1228
Y+FSTY+QYWIRKS+L +V R+ARG+++P LNKAI +IQKARK L GK PD+DEIA
Sbjct: 367 YRFSTYVQYWIRKSVLRMVARHARGIQVPCMLNKAIVQIQKARKALSQSHGKNPDEDEIA 426
Query: 1229 RFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDL 1408
+FTGLSLAKI SA KC+R+VGS+DQKIGD +AK+LE PD SI+SPE+TV+ QHM KD+
Sbjct: 427 KFTGLSLAKIRSANKCMRIVGSIDQKIGDCMNAKYLEFIPDLSIRSPEKTVMRQHMEKDI 486
Query: 1409 NNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETL 1588
+LLN L+ +ERQV++LRFGL+G SL+EIGR+F VSKEWIR++E+ A+TK+R+ ET
Sbjct: 487 YDLLNGLDARERQVMVLRFGLKGSPPRSLEEIGRVFRVSKEWIRRLEKKAMTKMRDTETC 546
Query: 1589 RSLNHYLN 1612
R+L+HYL+
Sbjct: 547 RNLSHYLD 554
>ref|XP_015167787.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Solanum
tuberosum]
Length = 560
Score = 500 bits (1287), Expect = e-169
Identities = 276/532 (51%), Positives = 357/532 (67%), Gaps = 12/532 (2%)
Frame = +2
Query: 47 TSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAAQTVSNDYSDTEQIKVN 226
+SY+ +G E YD AR S I+G+ E ++DP R +C S Q ++D S T +IK
Sbjct: 31 SSYTVKGREALYDPAR-SLKPFITGDCEPSHSDPFRVQTCLSDPQLWTSDTSVTTEIKTR 89
Query: 227 VRKRSCGGIYNIINDN-IQMPAGEDQSTFLTSLQAGKTLHFRVLMNNLNMLEKTFADSDM 403
+ S +Y I + I + ++ T+L + K+LHF +LM NL++LE FADS+M
Sbjct: 90 NGRGSPSNVYGDIGSHKIGISPDGEKPTYLNTT---KSLHFSLLMKNLDLLENMFADSEM 146
Query: 404 VRLERDILVQLERLGALNLFHAFLSRSR-SPTLVDLSDASTESNEELRMNKHVDESMAEI 580
RLERDILVQLE+LGAL FH LSR+ S T + D E +E+ + V ++ ++
Sbjct: 147 SRLERDILVQLEKLGALEFFHTCLSRTHHSSTFPKVLDVPRELIKEVEKDDLVGNAIDKV 206
Query: 581 VVHSGXXXXXXXXXXXXXXXLSK--TNXXXXXXXXXXXXXXLKYNGRKP--------KIT 730
VV S + T Y+G++ KI
Sbjct: 207 VVRSRKKQERKSRRNRASRNANDIITVQPHTKNIQEDLQQPKFYSGKRTQASRNKRQKIA 266
Query: 731 RNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVDKKTLQQNLHFGWYCRSE 910
+NE EM RGV+L+A+LERIR ILEEETG+ A+ SSWAEAAG+++K LQQ LHFGWYCR E
Sbjct: 267 KNEAEMSRGVKLVAQLERIRSILEEETGRVATFSSWAEAAGIEQKELQQRLHFGWYCRDE 326
Query: 911 VLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDHTRGYKFSTYIQYWIRKS 1090
+L+ST+SL++YLARNYR +GVAF+DLIQAG GVLQGA RFDHTRGYKFSTY+QYWIRKS
Sbjct: 327 LLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKS 386
Query: 1091 MLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDDEIARFTGLSLAKIASAG 1270
+ LV ++ARGVRIPF + K IN+I KARKTL GK+P DDEIA+FTGLS A+IA A
Sbjct: 387 LSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMAS 446
Query: 1271 KCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMIKDLNNLLNALEPKERQV 1450
KCLRVVGS+DQK+GD SAK LELTPD SI SPEETV+ Q ++ ++ +LL +L+PKE+QV
Sbjct: 447 KCLRVVGSIDQKVGDCISAKVLELTPDKSITSPEETVMRQDIVDNMYSLLESLDPKEQQV 506
Query: 1451 LLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRERETLRSLNHY 1606
+ RFGL HQ SL+EIGRL+ VSKEWIR+IER ALTKLR + + + HY
Sbjct: 507 IYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRNADYFQHITHY 558
>ref|XP_012077339.1| RNA polymerase sigma factor sigC [Jatropha curcas]
Length = 606
Score = 501 bits (1291), Expect = e-169
Identities = 271/551 (49%), Positives = 381/551 (69%), Gaps = 14/551 (2%)
Frame = +2
Query: 2 FSVQSPSLTNSVFWPTSYSFRGMEGSYDSARVSFPSVISGESETMYNDPLRAHSCSSAA- 178
F V SPS +S + + +G EGS + +R+SF SVIS E + ++ D L+ ++ SS+
Sbjct: 61 FHVNSPSRLSS----SPSAVKGREGSINISRLSFLSVISEEGDNLHRDHLKTNAYSSSGM 116
Query: 179 QTVSNDYSDTEQIKVNVRKRSCGGIYNIINDNIQMPAGEDQSTFLTSLQAGKTLHFRVLM 358
QT+ N++S E+ K++V KRS G+ + I+D Q+ ED +S + +T +F +L+
Sbjct: 117 QTLENEHSQVEEAKISVGKRSLSGLNDTIDD-AQVFIKEDDFVPPSSSK-DRTSNFSLLL 174
Query: 359 NNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRS---RSPTLVDLSDASTES 529
NLN+LE++FADSD+++LERDIL+QL +LGAL LF+ L+R+ ++ ++D SD TE+
Sbjct: 175 ENLNILEESFADSDVLKLERDILLQLGKLGALKLFNTCLTRTLEVQTANVLDFSDLPTEN 234
Query: 530 NEELRMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXLS----------KTNXXXXXXXX 679
+E + + + ++ +I+V +G K+
Sbjct: 235 IQECKRDGTSNGNVYKIIVCTGKKEERKSRRERASLKNGHKVPCFPLPLKSIQNGRGKAT 294
Query: 680 XXXXXXLKYNGRKPKITRNETEMLRGVQLLAKLERIRMILEEETGQAASLSSWAEAAGVD 859
R+ I RNE EM RGV++LA LE+IR LE+ETG+A SLS WAEAAG+D
Sbjct: 295 SFDKKTSNSKSRRLMIARNEAEMSRGVKVLANLEKIRTTLEQETGRAVSLSCWAEAAGLD 354
Query: 860 KKTLQQNLHFGWYCRSEVLRSTQSLIVYLARNYRSIGVAFDDLIQAGRYGVLQGAERFDH 1039
K LQQ LHFGWYCR E++RST+SL+++LARNYR +G+A +DL+QAG GVLQGAERFD
Sbjct: 355 MKVLQQQLHFGWYCRDELVRSTRSLVLFLARNYRGMGIALEDLLQAGNMGVLQGAERFDD 414
Query: 1040 TRGYKFSTYIQYWIRKSMLMLVERNARGVRIPFALNKAINKIQKARKTLCNRQGKYPDDD 1219
RGY+FSTY+QYWIRKSM +V R+ARG++IP L++AIN+IQKARK L GKYPDD+
Sbjct: 415 ARGYRFSTYVQYWIRKSMSKIVSRHARGIQIPCTLSRAINQIQKARKNLSASHGKYPDDE 474
Query: 1220 EIARFTGLSLAKIASAGKCLRVVGSLDQKIGDFTSAKFLELTPDTSIKSPEETVIWQHMI 1399
+IA FTGLSLAKI SA +CLRVVGS+DQK+GD +AK+LE DT+IKSPEE V+ QHMI
Sbjct: 475 DIAEFTGLSLAKIESASRCLRVVGSIDQKMGDCFNAKYLEFIHDTTIKSPEEAVMRQHMI 534
Query: 1400 KDLNNLLNALEPKERQVLLLRFGLRGHQCMSLQEIGRLFCVSKEWIRKIERTALTKLRER 1579
KD+++LL L+ +ERQVL+LR+GL+ HQ SL+EIGR+F VSKEW+R++E+ +T+LR
Sbjct: 535 KDMHDLLRGLDTRERQVLILRYGLKDHQPKSLEEIGRVFHVSKEWVRRLEKKVMTRLRNE 594
Query: 1580 ETLRSLNHYLN 1612
ET R+L +Y+N
Sbjct: 595 ETCRNLRYYVN 605