BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Acanthopanax21_contig00004515
         (1300 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_017226575.1| PREDICTED: DNA-directed RNA polymerases IV a...   118   5e-48
ref|XP_021621906.1| DNA-directed RNA polymerases IV and V subuni...   114   7e-41
ref|XP_006350243.1| PREDICTED: DNA-directed RNA polymerases IV a...   101   2e-40
ref|XP_019263002.1| PREDICTED: DNA-directed RNA polymerases IV a...   102   6e-40
ref|XP_009617770.1| PREDICTED: DNA-directed RNA polymerases IV a...   100   1e-39
ref|XP_009782113.1| PREDICTED: DNA-directed RNA polymerases IV a...   100   2e-39
ref|XP_019183982.1| PREDICTED: DNA-directed RNA polymerases IV a...   104   2e-39
gb|PIN02873.1| RNA polymerase II, fourth largest subunit [Handro...   104   1e-38
ref|XP_016504117.1| PREDICTED: DNA-directed RNA polymerases IV a...   100   2e-38
ref|XP_021690712.1| DNA-directed RNA polymerases IV and V subuni...   111   3e-38
ref|XP_017249909.1| PREDICTED: DNA-directed RNA polymerases IV a...   115   3e-38
gb|EEF37360.1| conserved hypothetical protein [Ricinus communis]      103   5e-38
ref|XP_004236644.1| PREDICTED: DNA-directed RNA polymerases IV a...   102   1e-37
ref|XP_015071616.1| PREDICTED: DNA-directed RNA polymerases IV a...   101   2e-37
ref|XP_007026413.1| PREDICTED: DNA-directed RNA polymerases IV a...   105   2e-37
gb|PHT54463.1| hypothetical protein CQW23_08925 [Capsicum baccatum]    96   2e-37
ref|XP_015578355.1| PREDICTED: DNA-directed RNA polymerases IV a...   103   2e-37
ref|XP_024021490.1| DNA-directed RNA polymerases IV and V subuni...    97   4e-37
ref|XP_019263003.1| PREDICTED: DNA-directed RNA polymerases IV a...    92   8e-37
ref|XP_021621910.1| DNA-directed RNA polymerases IV and V subuni...   114   8e-37

>ref|XP_017226575.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           [Daucus carota subsp. sativus]
          Length = 215

 Score =  118 bits (296), Expect(2) = 5e-48
 Identities = 63/92 (68%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
 Frame = +2

Query: 479 TVKLPKF*XXXXGLQHAKSGSD-YTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDE 655
           T+K+P F     GLQ AK GSD YTSPQ+VR +LQ LK HGVADSE CMIANIHPES DE
Sbjct: 125 TIKIPIF--FDKGLQLAKRGSDSYTSPQAVREILQRLKNHGVADSEACMIANIHPESADE 182

Query: 656 VFALVPSFKGKQSKLREPIKYALDELAKLKDS 751
           VF+LVPS KGK++KLR P++ AL ELAKL+ S
Sbjct: 183 VFSLVPSLKGKKNKLRGPVESALGELAKLRRS 214



 Score =  103 bits (256), Expect(2) = 5e-48
 Identities = 60/117 (51%), Positives = 73/117 (62%), Gaps = 4/117 (3%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANLNFSPRYGGKGD 345
           M +KGGKGYS PK  KS+LKTP S    +NGSAKSK G+NVQFE  A+LNFSPR GGKG+
Sbjct: 1   MGDKGGKGYSVPKPRKSSLKTPLS----NNGSAKSKHGVNVQFE--ADLNFSPRNGGKGE 54

Query: 346 TP----IXXXXXXXXXXXXXXXXXXXXXIAPLELRVEEELPTETTCLMDCEAAQILE 504
           +P    +                       P++LRVE++LP   TCL DCEAA+ILE
Sbjct: 55  SPMTNDLRGKGGKGDKVANGGKKPEKKTPPPVQLRVEKDLPENVTCLTDCEAAEILE 111


>ref|XP_021621906.1| DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
           [Manihot esculenta]
 ref|XP_021621907.1| DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
           [Manihot esculenta]
 ref|XP_021621908.1| DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
           [Manihot esculenta]
 ref|XP_021621909.1| DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
           [Manihot esculenta]
 gb|OAY41239.1| hypothetical protein MANES_09G085000 [Manihot esculenta]
          Length = 221

 Score =  114 bits (286), Expect(2) = 7e-41
 Identities = 58/92 (63%), Positives = 72/92 (78%)
 Frame = +2

Query: 479 TVKLPKF*XXXXGLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEV 658
           T+KLP        L +AK+G+ YT+PQSVRRV++SLKKHGV D E+C+IAN+ PE+VDEV
Sbjct: 132 TIKLPV--SFDKALNYAKTGARYTNPQSVRRVVESLKKHGVTDGEICVIANVCPETVDEV 189

Query: 659 FALVPSFKGKQSKLREPIKYALDELAKLKDST 754
           FALVPS K K++ LREPIK  +DELAKLK  T
Sbjct: 190 FALVPSLKSKKNMLREPIKDVVDELAKLKQQT 221



 Score = 83.2 bits (204), Expect(2) = 7e-41
 Identities = 53/116 (45%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
 Frame = +1

Query: 172 EKGGKGYSQPKVG-KSALKTPSSFPGKDNGSAKSKRGMNVQFESEAN-LNFSPRYGGKGD 345
           EKGGKG+S P  G KS+LK+  +  GKD+ SAKSKRG  VQF SE + L+F  + GG  D
Sbjct: 2   EKGGKGFSLPSKGLKSSLKSTPAKDGKDDSSAKSKRGRKVQFNSEGDKLDFLSKSGGNFD 61

Query: 346 TPIXXXXXXXXXXXXXXXXXXXXXIA----PLELRVEEELPTETTCLMDCEAAQIL 501
                                         PLEL+VE+ELP    CLMDCEAAQIL
Sbjct: 62  ATAVKGSLSKGGKGDKTSNGVKAPSTKEPQPLELKVEQELPKNVKCLMDCEAAQIL 117


>ref|XP_006350243.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Solanum
           tuberosum]
          Length = 220

 Score =  101 bits (252), Expect(2) = 2e-40
 Identities = 61/118 (51%), Positives = 72/118 (61%), Gaps = 5/118 (4%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANLNF-SPRYGGKG 342
           MAEKGGKG+S PK GKSALK+P+S  GKD+ S KSKRG  VQF+SE +L+  S +  GK 
Sbjct: 1   MAEKGGKGFSLPKSGKSALKSPAS-KGKDDSSVKSKRGRKVQFDSEGSLDTNSTKSNGKA 59

Query: 343 DTPIXXXXXXXXXXXXXXXXXXXXXIA----PLELRVEEELPTETTCLMDCEAAQILE 504
           D P                       A    PLELRVE+ELP  +TCLMDCEAA IL+
Sbjct: 60  DIPSLKGDLGKAGKGEKAGSAGKSQKAKAPDPLELRVEQELPANSTCLMDCEAADILQ 117



 Score = 94.7 bits (234), Expect(2) = 2e-40
 Identities = 46/77 (59%), Positives = 61/77 (79%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GL +A+    Y +PQ+V+++L+ LK+HGV+D E+CMIAN   ESVDEVFALVPSFK K+S
Sbjct: 141 GLAYAQRNRLYDNPQAVKQILEPLKQHGVSDGELCMIANFPLESVDEVFALVPSFKNKKS 200

Query: 695 KLREPIKYALDELAKLK 745
           KLR P++  L ELAKL+
Sbjct: 201 KLRVPLENVLAELAKLR 217


>ref|XP_019263002.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           isoform X1 [Nicotiana attenuata]
          Length = 220

 Score =  102 bits (254), Expect(2) = 6e-40
 Identities = 63/119 (52%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANL--NFSPRYGGK 339
           M EKGGKG+S PK GKSALK+P+S  GKD+ SAKSKRG  VQF+SE +L  NF+ +  GK
Sbjct: 1   MTEKGGKGFSLPKNGKSALKSPAS-KGKDDSSAKSKRGRKVQFDSEGSLDTNFT-KSNGK 58

Query: 340 GDTPIXXXXXXXXXXXXXXXXXXXXXIA----PLELRVEEELPTETTCLMDCEAAQILE 504
            D P                       A    PLELRVE+ELP  TTCLMDCEAA IL+
Sbjct: 59  ADQPSSKGVSGKGGKGEKAGSAGKSQAAKAPGPLELRVEQELPDNTTCLMDCEAADILQ 117



 Score = 92.4 bits (228), Expect(2) = 6e-40
 Identities = 45/77 (58%), Positives = 60/77 (77%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GL +A+    Y +P++V+++L+ LK HGV+D E+CMIAN   ESVDEVFALVPSFK K+S
Sbjct: 141 GLTYAQRNRLYDNPETVKQILKPLKAHGVSDGELCMIANFAVESVDEVFALVPSFKTKKS 200

Query: 695 KLREPIKYALDELAKLK 745
           KLR P++  L ELAKL+
Sbjct: 201 KLRVPLENVLGELAKLR 217


>ref|XP_009617770.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4
           [Nicotiana tomentosiformis]
 ref|XP_009617771.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4
           [Nicotiana tomentosiformis]
          Length = 220

 Score =  100 bits (249), Expect(2) = 1e-39
 Identities = 63/119 (52%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANL--NFSPRYGGK 339
           MAEKGGKG+S PK GKSALK+P+S  GKD+ SAKSKRG  VQF+SE +L  NF+ +  GK
Sbjct: 1   MAEKGGKGFSLPKNGKSALKSPAS-KGKDDISAKSKRGRKVQFDSEGSLDTNFT-KSNGK 58

Query: 340 GDTPIXXXXXXXXXXXXXXXXXXXXXIA----PLELRVEEELPTETTCLMDCEAAQILE 504
            D P                       A    PLELRVE+ELP  T CLMDCEAA IL+
Sbjct: 59  ADQPSSKGVSGKGGKGEKAGSAGKSQTAKAPGPLELRVEQELPDNTACLMDCEAADILQ 117



 Score = 93.2 bits (230), Expect(2) = 1e-39
 Identities = 46/77 (59%), Positives = 60/77 (77%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GL +A+    Y +P+ V+++L+ LK+HGV+D E+CMIAN   ESVDEVFALVPSFK K+S
Sbjct: 141 GLTYAQRNRLYDNPEIVKQILKPLKEHGVSDGELCMIANFAVESVDEVFALVPSFKTKKS 200

Query: 695 KLREPIKYALDELAKLK 745
           KLR P+K  L ELAKL+
Sbjct: 201 KLRIPLKNVLGELAKLR 217


>ref|XP_009782113.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4
           [Nicotiana sylvestris]
 ref|XP_009782115.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4
           [Nicotiana sylvestris]
 ref|XP_016494867.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           [Nicotiana tabacum]
          Length = 220

 Score =  100 bits (248), Expect(2) = 2e-39
 Identities = 61/118 (51%), Positives = 72/118 (61%), Gaps = 5/118 (4%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANLNFS-PRYGGKG 342
           MAEKGGKG+S PK GKSALK+P+S  GKD+ SAKSKRG  VQF+ E +L+ +  +  GK 
Sbjct: 1   MAEKGGKGFSLPKNGKSALKSPAS-KGKDDISAKSKRGRKVQFDPEGSLDTNLTKSNGKA 59

Query: 343 DTPIXXXXXXXXXXXXXXXXXXXXXIA----PLELRVEEELPTETTCLMDCEAAQILE 504
           D P                       A    PLELRVE+ELP  TTCLMDCEAA IL+
Sbjct: 60  DQPSSKGVSGKGGKGEKVGSGSKSQTAKAPGPLELRVEQELPDNTTCLMDCEAADILQ 117



 Score = 93.2 bits (230), Expect(2) = 2e-39
 Identities = 45/77 (58%), Positives = 61/77 (79%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GL +A+    Y +P++V+++L+ LK+HGV+D E+CMIAN   ESVDEVFALVPSFK K+S
Sbjct: 141 GLTYAQRNRLYDNPETVKQILKPLKEHGVSDGELCMIANFAVESVDEVFALVPSFKTKKS 200

Query: 695 KLREPIKYALDELAKLK 745
           KLR P++  L ELAKL+
Sbjct: 201 KLRVPLENVLGELAKLR 217


>ref|XP_019183982.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           [Ipomoea nil]
 ref|XP_019183983.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           [Ipomoea nil]
          Length = 212

 Score =  104 bits (259), Expect(2) = 2e-39
 Identities = 53/92 (57%), Positives = 69/92 (75%)
 Frame = +2

Query: 479 TVKLPKF*XXXXGLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEV 658
           T+KLP       GL +A+    Y + ++V++ LQ LK+HGV+D EMCMIAN HPESVDEV
Sbjct: 123 TIKLPV--SFDNGLMYARRHKLYENSKTVKQALQPLKEHGVSDGEMCMIANFHPESVDEV 180

Query: 659 FALVPSFKGKQSKLREPIKYALDELAKLKDST 754
           FALV S KGK++K++EP+K  LDELAKLK S+
Sbjct: 181 FALVRSLKGKENKVQEPLKNVLDELAKLKKSS 212



 Score = 89.0 bits (219), Expect(2) = 2e-39
 Identities = 54/113 (47%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANLNFS-PRYGGKG 342
           M EKGGKG SQP  GKSALKT SS  GKD+ S K+K+G  VQF+S+ +L+ S  +  GK 
Sbjct: 1   MTEKGGKGKSQPNGGKSALKT-SSAKGKDDSSGKTKKGRKVQFDSDDSLDGSFMKSNGKA 59

Query: 343 DTPIXXXXXXXXXXXXXXXXXXXXXIAPLELRVEEELPTETTCLMDCEAAQIL 501
           D P+                       PLELRVE+E+   T CL+DCEAA+IL
Sbjct: 60  DKPVGKGDKVGKSGKGQTAKAP----TPLELRVEQEISGNTKCLLDCEAAEIL 108


>gb|PIN02873.1| RNA polymerase II, fourth largest subunit [Handroanthus
           impetiginosus]
          Length = 220

 Score =  104 bits (259), Expect(2) = 1e-38
 Identities = 48/82 (58%), Positives = 65/82 (79%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GL +AK G +Y  PQ+V+++ + LKKHGV++ E+C+IANI P+SVDEVFALVP+ K K S
Sbjct: 134 GLTYAKRGGNYAKPQTVKKIFEPLKKHGVSECEICLIANICPDSVDEVFALVPTLKPKMS 193

Query: 695 KLREPIKYALDELAKLKDST*N 760
           KLREP++ ALDEL  LK++  N
Sbjct: 194 KLREPLRIALDELGNLKEALAN 215



 Score = 85.9 bits (211), Expect(2) = 1e-38
 Identities = 52/114 (45%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANL-NFSPRYGGKG 342
           MAEKGGKGY   K GKSALK+P    G  + S KSK+G  VQF+SE +  N  P+  GK 
Sbjct: 1   MAEKGGKGYLPAKGGKSALKSPV---GNGDSSTKSKKGKKVQFDSEDSFENNIPKSNGKA 57

Query: 343 DTPIXXXXXXXXXXXXXXXXXXXXXIAPLELRVEEELPTETTCLMDCEAAQILE 504
           DTP                       +P E R+E+ELP  + CLMDCEAA+IL+
Sbjct: 58  DTPAGKGGKGDKVANGTKKPTVKTP-SPTERRLEQELPPNSVCLMDCEAAEILQ 110


>ref|XP_016504117.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           [Nicotiana tabacum]
 ref|XP_016504118.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           [Nicotiana tabacum]
          Length = 220

 Score =  100 bits (249), Expect(2) = 2e-38
 Identities = 63/119 (52%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANL--NFSPRYGGK 339
           MAEKGGKG+S PK GKSALK+P+S  GKD+ SAKSKRG  VQF+SE +L  NF+ +  GK
Sbjct: 1   MAEKGGKGFSLPKNGKSALKSPAS-KGKDDISAKSKRGRKVQFDSEGSLDTNFT-KSNGK 58

Query: 340 GDTPIXXXXXXXXXXXXXXXXXXXXXIA----PLELRVEEELPTETTCLMDCEAAQILE 504
            D P                       A    PLELRVE+ELP  T CLMDCEAA IL+
Sbjct: 59  ADQPSSKGVSGKGGKGEKAGSAGKSQTAKAPGPLELRVEQELPDNTACLMDCEAADILQ 117



 Score = 89.4 bits (220), Expect(2) = 2e-38
 Identities = 44/77 (57%), Positives = 59/77 (76%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GL +A+    Y +P+ V+++L+ LK+HGV+D E+CMIAN   ESV+EVFALVPS K K+S
Sbjct: 141 GLAYAQRNRLYDNPEIVKQILKPLKEHGVSDGELCMIANFAVESVEEVFALVPSLKTKKS 200

Query: 695 KLREPIKYALDELAKLK 745
           KLR P+K  L ELAKL+
Sbjct: 201 KLRIPLKNVLGELAKLR 217


>ref|XP_021690712.1| DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
           [Hevea brasiliensis]
 ref|XP_021690713.1| DNA-directed RNA polymerases IV and V subunit 4-like isoform X2
           [Hevea brasiliensis]
          Length = 224

 Score =  111 bits (277), Expect(2) = 3e-38
 Identities = 57/92 (61%), Positives = 71/92 (77%)
 Frame = +2

Query: 479 TVKLPKF*XXXXGLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEV 658
           T+KLP        L +AK+G  YT+PQSVRRV++S+KKHGV+D E+C+IAN+ PESVDEV
Sbjct: 135 TIKLPV--SFDGALHYAKTGGHYTNPQSVRRVVESVKKHGVSDGEICVIANVCPESVDEV 192

Query: 659 FALVPSFKGKQSKLREPIKYALDELAKLKDST 754
           FALVPS K K++ LREP+K  L ELAKLK  T
Sbjct: 193 FALVPSLKSKKNMLREPLKDVLGELAKLKLQT 224



 Score = 77.8 bits (190), Expect(2) = 3e-38
 Identities = 56/119 (47%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
 Frame = +1

Query: 172 EKGGKGYSQPKVG-KSALK-TPS---SFPGKDNGSAKSKRGMNVQFESE-ANLNFSPRYG 333
           EKGGKGYS P  G KS+LK TP+   S  GKD+ SAKSKRG  VQF SE    +F P+  
Sbjct: 2   EKGGKGYSIPSKGLKSSLKSTPAKDASMKGKDDSSAKSKRGRKVQFNSEDGKFDFLPKSD 61

Query: 334 GKGDTPIXXXXXXXXXXXXXXXXXXXXXIA---PLELRVEEELPTETTCLMDCEAAQIL 501
           GK  +                        A    LEL+VE+ELP    CLMDCEAAQIL
Sbjct: 62  GKFYSTAAKGILSKGGKGDKISNGEKAPSAKSQSLELKVEKELPKNAQCLMDCEAAQIL 120


>ref|XP_017249909.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           isoform X1 [Daucus carota subsp. sativus]
          Length = 195

 Score =  115 bits (289), Expect(2) = 3e-38
 Identities = 56/79 (70%), Positives = 69/79 (87%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GLQ AK G++YTS QSV+ VLQ+LKKHGVADSE+C+IANIHPES DEVF+LVPS KGK++
Sbjct: 116 GLQRAKRGNNYTSLQSVQEVLQNLKKHGVADSELCLIANIHPESADEVFSLVPSLKGKKN 175

Query: 695 KLREPIKYALDELAKLKDS 751
           KL EP+  ALDEL+K++ S
Sbjct: 176 KLLEPLNSALDELSKIECS 194



 Score = 73.2 bits (178), Expect(2) = 3e-38
 Identities = 49/110 (44%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
 Frame = +1

Query: 178 GGKGYSQPKVGKSALKTP-SSFPGKDNGSAKSKRGMNVQFESEANLNFSPRYGGKGDTPI 354
           GGKG +     KSALKTP SS    +NGS KS++GMNVQFE E       +    G  P+
Sbjct: 6   GGKGGA-----KSALKTPLSSGFELNNGSTKSRKGMNVQFEFEDRGGKRDKAANGGKNPV 60

Query: 355 XXXXXXXXXXXXXXXXXXXXXIAPLELRVEEELPTETTCLMDCEAAQILE 504
                                  PL+LRVE+ELP   TCLMDCEAAQ+LE
Sbjct: 61  KKPTP------------------PLQLRVEQELPENVTCLMDCEAAQVLE 92


>gb|EEF37360.1| conserved hypothetical protein [Ricinus communis]
          Length = 203

 Score =  103 bits (256), Expect(2) = 5e-38
 Identities = 50/89 (56%), Positives = 69/89 (77%)
 Frame = +2

Query: 479 TVKLPKF*XXXXGLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEV 658
           T+KLP        LQHA++G+ +T+PQSVRR+L+ LKKHGV++ E+C IAN+ P+ VDEV
Sbjct: 114 TIKLPV--SFDRALQHARTGARFTNPQSVRRILEGLKKHGVSEGEICTIANVCPDGVDEV 171

Query: 659 FALVPSFKGKQSKLREPIKYALDELAKLK 745
           FALVPS K K++ LREP+K  L +L++LK
Sbjct: 172 FALVPSLKSKKNVLREPLKDILGQLSELK 200



 Score = 85.1 bits (209), Expect(2) = 5e-38
 Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
 Frame = +1

Query: 172 EKGGKGYSQPKVG-KSALK--TPSSFPGKDNGSAKSKRGMNVQFESEANLNFSPRYGGKG 342
           EKGGKG+S P  G KS+LK  TP+S  GKD+ SAKSKRG  VQF S+ N++     GGKG
Sbjct: 2   EKGGKGFSLPGKGLKSSLKSITPASTKGKDDTSAKSKRGKKVQFNSQGNMS----KGGKG 57

Query: 343 DTPIXXXXXXXXXXXXXXXXXXXXXIAPLELRVEEELPTETTCLMDCEAAQILE 504
           D                          PLEL++E++LP    CLMDCEAAQ+L+
Sbjct: 58  D-----------KVSNGVKISSTKEPQPLELKIEQDLPKNAKCLMDCEAAQVLQ 100


>ref|XP_004236644.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Solanum
           lycopersicum]
          Length = 220

 Score =  102 bits (253), Expect(2) = 1e-37
 Identities = 61/118 (51%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANLNF-SPRYGGKG 342
           MAEKGGKG+S PK GKS+LK+P+S  GKD+ SAKSKRG  VQF+SE +L+  S +  GK 
Sbjct: 1   MAEKGGKGFSLPKSGKSSLKSPAS-KGKDDSSAKSKRGRKVQFDSEGSLDTNSTKSNGKA 59

Query: 343 DTPIXXXXXXXXXXXXXXXXXXXXXIA----PLELRVEEELPTETTCLMDCEAAQILE 504
           D P                       A    PLELRVE+EL T+TTC+MDCEAA IL+
Sbjct: 60  DIPSFKGDLGKAGKGEKAGSAGKSQKAKAPDPLELRVEQELSTKTTCMMDCEAADILQ 117



 Score = 85.1 bits (209), Expect(2) = 1e-37
 Identities = 42/77 (54%), Positives = 56/77 (72%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GL + +    Y +PQ+V ++L  LK+HGV+D E+CMIAN   ESVDEVFA VPSFK ++S
Sbjct: 141 GLAYGQRIRLYDNPQAVEQILGPLKQHGVSDGELCMIANFPLESVDEVFAFVPSFKNRKS 200

Query: 695 KLREPIKYALDELAKLK 745
           KLR P++  L EL KL+
Sbjct: 201 KLRVPLENVLAELTKLR 217


>ref|XP_015071616.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           [Solanum pennellii]
          Length = 220

 Score =  101 bits (252), Expect(2) = 2e-37
 Identities = 61/118 (51%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANLNF-SPRYGGKG 342
           MAEKGGKG+S PK GKSALK+P+S  GKD+ SAKSKRG  VQF+SE +L+  S +  GK 
Sbjct: 1   MAEKGGKGFSLPKSGKSALKSPAS-KGKDDSSAKSKRGRKVQFDSEGSLDTNSTKSNGKA 59

Query: 343 DTPIXXXXXXXXXXXXXXXXXXXXXIA----PLELRVEEELPTETTCLMDCEAAQILE 504
           D P                       A    PLELRVE+EL T++TC+MDCEAA IL+
Sbjct: 60  DIPSFKGDLGKAGKGEKAGSAGKSQKAKALDPLELRVEQELSTKSTCMMDCEAADILQ 117



 Score = 85.1 bits (209), Expect(2) = 2e-37
 Identities = 42/77 (54%), Positives = 56/77 (72%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GL + +    Y +PQ+V ++L  LK+HGV+D E+CMIAN   ESVDEVFA VPSFK ++S
Sbjct: 141 GLAYGQRIRLYDNPQAVEQILGPLKQHGVSDGELCMIANFPLESVDEVFAFVPSFKNRKS 200

Query: 695 KLREPIKYALDELAKLK 745
           KLR P++  L EL KL+
Sbjct: 201 KLRVPLENVLAELTKLR 217


>ref|XP_007026413.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform
           X1 [Theobroma cacao]
 gb|EOY29035.1| DNA-directed RNA polymerase II subunit rpb4, putative isoform 1
           [Theobroma cacao]
 gb|EOY29036.1| DNA-directed RNA polymerase II subunit rpb4, putative isoform 1
           [Theobroma cacao]
          Length = 231

 Score =  105 bits (262), Expect(2) = 2e-37
 Identities = 56/92 (60%), Positives = 72/92 (78%)
 Frame = +2

Query: 479 TVKLPKF*XXXXGLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEV 658
           T+KLP+      GLQ+AK+ S YT+PQSVRRVL++L K+GV+ SE+C+IAN  PE+VDEV
Sbjct: 142 TIKLPE--SFHLGLQYAKTRSYYTNPQSVRRVLEALSKYGVSYSEICVIANTCPETVDEV 199

Query: 659 FALVPSFKGKQSKLREPIKYALDELAKLKDST 754
           FALV S + K+S+L EP+K  LDEL KLK ST
Sbjct: 200 FALVRSLEAKKSRLSEPLKDVLDELGKLKKST 231



 Score = 80.9 bits (198), Expect(2) = 2e-37
 Identities = 60/128 (46%), Positives = 68/128 (53%), Gaps = 15/128 (11%)
 Frame = +1

Query: 166 MAEKGGKGYSQPK--VGKSALK-TPSSFP---GKDNGSAKSKRGMNVQFESEA--NLNF- 318
           M+EKGGKG+S P     KSALK TP+S     GKD+ SAKSKRG  VQF  E   NL F 
Sbjct: 1   MSEKGGKGFSLPTKTTPKSALKSTPASATARHGKDDNSAKSKRGRKVQFGMEGLPNLGFN 60

Query: 319 --SPRYGGKGDTPIXXXXXXXXXXXXXXXXXXXXXIAP----LELRVEEELPTETTCLMD 480
             SP+  GK   P+                     +A     LELRVE+ELP    CLMD
Sbjct: 61  FSSPKSDGKFAIPVGKGDWAKGGKGEKVVNGGKAPVAKEAKSLELRVEQELPENVKCLMD 120

Query: 481 CEAAQILE 504
           CEAA ILE
Sbjct: 121 CEAANILE 128


>gb|PHT54463.1| hypothetical protein CQW23_08925 [Capsicum baccatum]
          Length = 219

 Score = 95.9 bits (237), Expect(2) = 2e-37
 Identities = 55/115 (47%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANLNF-SPRYGGKG 342
           MAEKGGKG+  PK GKSALK+P+S  GKD+ S KSKRG  VQF+SE +L+  S +  GK 
Sbjct: 1   MAEKGGKGFILPKTGKSALKSPAS-KGKDDSSLKSKRGRKVQFDSEGSLDINSTKSNGKA 59

Query: 343 DTPIXXXXXXXXXXXXXXXXXXXXXIA-PLELRVEEELPTETTCLMDCEAAQILE 504
           D P                         PLELR E+E+  +TTC+MDCEAA+I++
Sbjct: 60  DIPSFKVDAGKAGKAGAGGKSQKPKAPEPLELRAEQEISEDTTCVMDCEAAEIMQ 114



 Score = 90.5 bits (223), Expect(2) = 2e-37
 Identities = 47/89 (52%), Positives = 63/89 (70%)
 Frame = +2

Query: 479 TVKLPKF*XXXXGLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEV 658
           ++KLP       GL +A+    Y +PQ+VR+ L+ +K+HGV D E+CMI N   ESVDEV
Sbjct: 128 SIKLPV--SFDRGLAYAQRNKLYDNPQAVRQALEPVKQHGVTDGEICMIGNFPMESVDEV 185

Query: 659 FALVPSFKGKQSKLREPIKYALDELAKLK 745
           FALVPS K K++KLR P++ AL ELAKL+
Sbjct: 186 FALVPSLKNKKNKLRVPLENALAELAKLR 214


>ref|XP_015578355.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform
           X3 [Ricinus communis]
          Length = 206

 Score =  103 bits (256), Expect(2) = 2e-37
 Identities = 50/89 (56%), Positives = 69/89 (77%)
 Frame = +2

Query: 479 TVKLPKF*XXXXGLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEV 658
           T+KLP        LQHA++G+ +T+PQSVRR+L+ LKKHGV++ E+C IAN+ P+ VDEV
Sbjct: 117 TIKLPV--SFDRALQHARTGARFTNPQSVRRILEGLKKHGVSEGEICTIANVCPDGVDEV 174

Query: 659 FALVPSFKGKQSKLREPIKYALDELAKLK 745
           FALVPS K K++ LREP+K  L +L++LK
Sbjct: 175 FALVPSLKSKKNVLREPLKDILGQLSELK 203



 Score = 83.2 bits (204), Expect(2) = 2e-37
 Identities = 53/114 (46%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +1

Query: 172 EKGGKGYSQPKVG-KSALK--TPSSFPGKDNGSAKSKRGMNVQFESEANLNFSPRYGGKG 342
           EKGGKG+S P  G KS+LK  TP+S  GKD+ SAKSKRG  VQF S+A      + GGKG
Sbjct: 2   EKGGKGFSLPGKGLKSSLKSITPASTKGKDDTSAKSKRGKKVQFNSQATKGNMSK-GGKG 60

Query: 343 DTPIXXXXXXXXXXXXXXXXXXXXXIAPLELRVEEELPTETTCLMDCEAAQILE 504
           D                          PLEL++E++LP    CLMDCEAAQ+L+
Sbjct: 61  D-----------KVSNGVKISSTKEPQPLELKIEQDLPKNAKCLMDCEAAQVLQ 103


>ref|XP_024021490.1| DNA-directed RNA polymerases IV and V subunit 4 [Morus notabilis]
          Length = 230

 Score = 97.4 bits (241), Expect(2) = 4e-37
 Identities = 48/82 (58%), Positives = 63/82 (76%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GLQ+AK GS YT+  S+R+VL++L ++GV D E+C+IA++ PE+ DEVFALVPS K  +S
Sbjct: 146 GLQYAKRGSHYTNALSIRKVLETLTQYGVTDGEICIIADVCPETADEVFALVPSLKANKS 205

Query: 695 KLREPIKYALDELAKLKDST*N 760
            LREP+K  L ELAKLK  T N
Sbjct: 206 LLREPVKKVLLELAKLKQPTPN 227



 Score = 87.8 bits (216), Expect(2) = 4e-37
 Identities = 52/122 (42%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
 Frame = +1

Query: 166 MAEKGGKGYSQP--KVGKSALKTPS----SFPGKDNGSAKSKRGMNVQFES---EANLNF 318
           M +K GK ++ P  K  KS+LK+ S    +  GKD+ SAKSK+G  VQF++   E   NF
Sbjct: 1   MGDKAGKNFTMPQKKGVKSSLKSSSGKEGTLKGKDDSSAKSKKGRKVQFDAGVAEPKSNF 60

Query: 319 SPRYGGKGDTPIXXXXXXXXXXXXXXXXXXXXXIAPLELRVEEELPTETTCLMDCEAAQI 498
           S +YGGKGDTP                        PLELR+E+ELP    CL+ CEAA+I
Sbjct: 61  SSKYGGKGDTPTAFPKGKGDRLFNSGKSSVPKTPQPLELRIEDELPKNVKCLLACEAAEI 120

Query: 499 LE 504
           L+
Sbjct: 121 LQ 122


>ref|XP_019263003.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           isoform X2 [Nicotiana attenuata]
 gb|OIT37437.1| dna-directed rna polymerases iv and v subunit 4 [Nicotiana
           attenuata]
          Length = 217

 Score = 92.4 bits (228), Expect(2) = 8e-37
 Identities = 45/77 (58%), Positives = 60/77 (77%)
 Frame = +2

Query: 515 GLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEVFALVPSFKGKQS 694
           GL +A+    Y +P++V+++L+ LK HGV+D E+CMIAN   ESVDEVFALVPSFK K+S
Sbjct: 138 GLTYAQRNRLYDNPETVKQILKPLKAHGVSDGELCMIANFAVESVDEVFALVPSFKTKKS 197

Query: 695 KLREPIKYALDELAKLK 745
           KLR P++  L ELAKL+
Sbjct: 198 KLRVPLENVLGELAKLR 214



 Score = 92.0 bits (227), Expect(2) = 8e-37
 Identities = 60/119 (50%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
 Frame = +1

Query: 166 MAEKGGKGYSQPKVGKSALKTPSSFPGKDNGSAKSKRGMNVQFESEANL--NFSPRYGGK 339
           M EKGGKG+S PK GKSALK+P+S  GKD+ SAKSKRG  VQF+SE +L  NF+ +  GK
Sbjct: 1   MTEKGGKGFSLPKNGKSALKSPAS-KGKDDSSAKSKRGRKVQFDSEGSLDTNFT-KSNGK 58

Query: 340 GDTPIXXXXXXXXXXXXXXXXXXXXXIA----PLELRVEEELPTETTCLMDCEAAQILE 504
            D P                       A    PLELRVE++    TTCLMDCEAA IL+
Sbjct: 59  ADQPSSKGVSGKGGKGEKAGSAGKSQAAKAPGPLELRVEQD---NTTCLMDCEAADILQ 114


>ref|XP_021621910.1| DNA-directed RNA polymerases IV and V subunit 4-like isoform X2
           [Manihot esculenta]
          Length = 212

 Score =  114 bits (286), Expect(2) = 8e-37
 Identities = 58/92 (63%), Positives = 72/92 (78%)
 Frame = +2

Query: 479 TVKLPKF*XXXXGLQHAKSGSDYTSPQSVRRVLQSLKKHGVADSEMCMIANIHPESVDEV 658
           T+KLP        L +AK+G+ YT+PQSVRRV++SLKKHGV D E+C+IAN+ PE+VDEV
Sbjct: 123 TIKLPV--SFDKALNYAKTGARYTNPQSVRRVVESLKKHGVTDGEICVIANVCPETVDEV 180

Query: 659 FALVPSFKGKQSKLREPIKYALDELAKLKDST 754
           FALVPS K K++ LREPIK  +DELAKLK  T
Sbjct: 181 FALVPSLKSKKNMLREPIKDVVDELAKLKQQT 212



 Score = 69.7 bits (169), Expect(2) = 8e-37
 Identities = 43/94 (45%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
 Frame = +1

Query: 235 SFPGKDNGSAKSKRGMNVQFESEAN-LNFSPRYGGKGDTPIXXXXXXXXXXXXXXXXXXX 411
           SFPGKD+ SAKSKRG  VQF SE + L+F  + GG  D                      
Sbjct: 15  SFPGKDDSSAKSKRGRKVQFNSEGDKLDFLSKSGGNFDATAVKGSLSKGGKGDKTSNGVK 74

Query: 412 XXIA----PLELRVEEELPTETTCLMDCEAAQIL 501
                   PLEL+VE+ELP    CLMDCEAAQIL
Sbjct: 75  APSTKEPQPLELKVEQELPKNVKCLMDCEAAQIL 108