BLASTX nr result
ID: Acanthopanax21_contig00003263
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Acanthopanax21_contig00003263
(485 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PHT40220.1| Retrovirus-related Pol polyprotein from transposo... 75 1e-12
gb|AAK29467.1| polyprotein-like [Solanum chilense] 73 8e-12
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 70 7e-11
gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinen... 64 9e-09
gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo... 63 2e-08
gb|OMO59210.1| Integrase, catalytic core [Corchorus capsularis] 62 5e-08
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 58 9e-07
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 57 2e-06
dbj|BAT97420.1| hypothetical protein VIGAN_09086300 [Vigna angul... 57 2e-06
>gb|PHT40220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Capsicum baccatum]
Length = 512
Score = 74.7 bits (182), Expect = 1e-12
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Frame = +2
Query: 17 CFYCNKEGHYKRNCKIRLDKQKTGEQ-GNVEDQNTAGAV--TEDVVILSFREEECLHVGD 187
C+ CN+ GH+KR+C R K+ GE G D NTA V +DVV+ EEEC+H+
Sbjct: 142 CYNCNQPGHFKRDCPTR--KRGKGESSGQKNDDNTAATVQNNDDVVLFINEEEECMHLAG 199
Query: 188 QKSEWVIDTGASYHAT 235
+ EWV+DTG SYHAT
Sbjct: 200 TELEWVVDTGESYHAT 215
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 72.8 bits (177), Expect = 8e-12
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Frame = +2
Query: 17 CFYCNKEGHYKRNCKIRLDKQKTGEQ-GNVEDQNTAGAV--TEDVVILSFREEECLHVGD 187
C+ C++ GH+KR+C K+ GE G D NTA V +DVV+L EEEC+H+
Sbjct: 233 CYNCDQPGHFKRDCPN--PKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAG 290
Query: 188 QKSEWVIDTGASYHAT 235
+SEWV+DT ASYHAT
Sbjct: 291 TESEWVVDTAASYHAT 306
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
Length = 1328
Score = 70.1 bits (170), Expect = 7e-11
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Frame = +2
Query: 17 CFYCNKEGHYKRNC-KIRLDKQKTGEQGNVEDQNTAGAV--TEDVVILSFREEECLHVGD 187
C+ CN+ GH+KR+C R K +T Q N D NTA V ++VV+ EEEC+H+
Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSGQKN--DDNTAAMVQNNDNVVLFINEEEECMHLSG 289
Query: 188 QKSEWVIDTGASYHAT 235
+SEWV+DT AS+HAT
Sbjct: 290 PESEWVVDTAASHHAT 305
>gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1340
Score = 63.9 bits (154), Expect = 9e-09
Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Frame = +2
Query: 11 GRCFYCNKEGHYKRNCKIRLDKQKTGEQGNV-----EDQNTAGAVTEDVVILSFREEECL 175
G+C +C GH K+NC K G GN + +NTA +V+ D E ECL
Sbjct: 227 GKCHHCGIFGHMKKNCNKLKKDPKEGRDGNTHQPNDDTRNTAASVSHDECEFLCLEGECL 286
Query: 176 HVGDQKS-EWVIDTGASYHAT 235
HV D S WV+D+GAS+HAT
Sbjct: 287 HVDDCSSVAWVVDSGASFHAT 307
>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1321
Score = 62.8 bits (151), Expect = 2e-08
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +2
Query: 17 CFYCNKEGHYKRNCKIRLDKQKTGEQGNVEDQNTAG--AVTEDVVILSFREEECLHVGDQ 190
C+ C K GH K+NC R K++ ++ D+NTA + ++D + L + EC H+ +
Sbjct: 226 CYNCGKPGHLKKNC--RFLKKEIQDKNQANDRNTAATTSASDDEITLLCNQGECCHIAEP 283
Query: 191 KSEWVIDTGASYHATVDR 244
EW+ID+ ASYH R
Sbjct: 284 DEEWIIDSAASYHCVPKR 301
>gb|OMO59210.1| Integrase, catalytic core [Corchorus capsularis]
Length = 855
Score = 61.6 bits (148), Expect = 5e-08
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Frame = +2
Query: 23 YCNKEGHYKRNCKIRLDKQKTGE--QGNVEDQNTAGAVT-EDVVILSFREEECLHVGDQK 193
+C K GH KRNCK+ ++K G+ + + E+ N V+ E+ V L +C HV D
Sbjct: 83 HCGKVGHLKRNCKLLKQERKDGKSKKNSEEESNVTVVVSDEETVSLICGHGDCNHVTDPS 142
Query: 194 SEWVIDTGASYHATVDR 244
+EW++DTGA+YH R
Sbjct: 143 NEWIVDTGATYHCVPKR 159
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 58.2 bits (139), Expect = 9e-07
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +2
Query: 17 CFYCNKEGHYKRNCKIRLDKQKTGEQGNVEDQNTAGAVTEDVVILSFREEECLHVGDQKS 196
C++C KEGH K++C R K + EQG AG +TE +V + E +H + K
Sbjct: 271 CWFCKKEGHVKKDCFARKKKFENEEQGE------AGVITEKLV---YSEALSMHDQEAKE 321
Query: 197 EWVIDTGASYHAT 235
+WVID+G +YH T
Sbjct: 322 KWVIDSGCTYHIT 334
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 57.4 bits (137), Expect = 2e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +2
Query: 17 CFYCNKEGHYKRNCKIRLDKQKTGEQGNVEDQNTAGAVTEDVVILSFREEECLHVGDQKS 196
C+ C KEGH+K+ C + +K K G + + D L+ REE + +
Sbjct: 244 CWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVREESNADNQEVDN 303
Query: 197 EWVIDTGASYHATVDR 244
EW++DTG S+H T R
Sbjct: 304 EWIMDTGCSFHMTPRR 319
>dbj|BAT97420.1| hypothetical protein VIGAN_09086300 [Vigna angularis var.
angularis]
Length = 378
Score = 57.0 bits (136), Expect = 2e-06
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +2
Query: 17 CFYCNKEGHYKRNCKIRLDKQKTGE--------QGNVEDQNTAGAVTEDVVILSFREEEC 172
CFYC K+GH K+ C+ QK G + +E++ T V+ D + E
Sbjct: 227 CFYCGKDGHKKQECRFLKRDQKNGTVHPDMVDPKQKLEEKTTTAVVSNDENVFLITEVNY 286
Query: 173 LHVGDQKSEWVIDTGASYHAT 235
L++ W++DTGAS+H T
Sbjct: 287 LNIAIDDCTWIVDTGASFHVT 307