BLASTX nr result
ID: Acanthopanax21_contig00001172
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Acanthopanax21_contig00001172
(509 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KNB35845.1| RNA polymerase sigma factor RpoD, partial [Salmon... 247 3e-81
gb|EHC82305.1| RNA polymerase sigma factor RpoD [Salmonella ente... 247 6e-80
ref|WP_077914930.1| RNA polymerase sigma factor RpoD, partial [S... 247 1e-78
emb|CDQ55114.1| rpoD [Klebsiella pneumoniae] 253 4e-78
emb|CCI78737.1| rpoD [Klebsiella pneumoniae subsp. rhinoscleroma... 253 4e-78
dbj|BAH65247.1| RNA polymerase sigma factor [Klebsiella pneumoni... 253 4e-78
ref|WP_080097127.1| RNA polymerase sigma factor RpoD, partial [S... 247 5e-78
ref|WP_080097734.1| RNA polymerase sigma factor RpoD, partial [S... 247 7e-78
ref|WP_100752977.1| hypothetical protein, partial [Escherichia c... 237 1e-77
gb|KFH88529.1| RNA polymerase sigma factor RpoD, partial [Escher... 237 1e-77
gb|KFH79320.1| RNA polymerase sigma factor RpoD, partial [Escher... 237 1e-77
ref|WP_080085495.1| RNA polymerase sigma factor RpoD, partial [S... 247 1e-77
ref|WP_071597710.1| RNA polymerase sigma factor RpoD, partial [D... 251 2e-77
ref|WP_080218334.1| RNA polymerase sigma factor RpoD, partial [S... 247 2e-77
ref|WP_080181924.1| RNA polymerase sigma factor RpoD, partial [S... 247 2e-77
gb|PQN65446.1| RNA polymerase sigma factor RpoD, partial [Shigel... 237 2e-77
gb|KFH96361.1| RNA polymerase sigma factor RpoD, partial [Escher... 237 3e-77
gb|KFH76051.1| RNA polymerase sigma factor RpoD, partial [Escher... 237 3e-77
gb|KFH78577.1| RNA polymerase sigma factor RpoD, partial [Escher... 237 3e-77
ref|WP_077246218.1| RNA polymerase sigma factor RpoD [Dickeya da... 251 3e-77
>gb|KNB35845.1| RNA polymerase sigma factor RpoD, partial [Salmonella enterica
subsp. enterica serovar Infantis]
Length = 189
Score = 247 bits (631), Expect = 3e-81
Identities = 128/141 (90%), Positives = 129/141 (91%), Gaps = 2/141 (1%)
Frame = +2
Query: 92 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 271
NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI
Sbjct: 39 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 98
Query: 272 QVMEEAPDADDLMLAENT--XXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELL 445
QVMEEAPDADDL+LAENT QVLSSVESEIGRTTDPVRMYMREMGTVELL
Sbjct: 99 QVMEEAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 158
Query: 446 TREGEIDIAKRIEDGINQVQC 508
TREGEIDIAKRIEDGINQVQC
Sbjct: 159 TREGEIDIAKRIEDGINQVQC 179
>gb|EHC82305.1| RNA polymerase sigma factor RpoD [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
Length = 278
Score = 247 bits (631), Expect = 6e-80
Identities = 128/141 (90%), Positives = 129/141 (91%), Gaps = 2/141 (1%)
Frame = +2
Query: 92 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 271
NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI
Sbjct: 39 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 98
Query: 272 QVMEEAPDADDLMLAENT--XXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELL 445
QVMEEAPDADDL+LAENT QVLSSVESEIGRTTDPVRMYMREMGTVELL
Sbjct: 99 QVMEEAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 158
Query: 446 TREGEIDIAKRIEDGINQVQC 508
TREGEIDIAKRIEDGINQVQC
Sbjct: 159 TREGEIDIAKRIEDGINQVQC 179
>ref|WP_077914930.1| RNA polymerase sigma factor RpoD, partial [Salmonella enterica]
Length = 374
Score = 247 bits (631), Expect = 1e-78
Identities = 128/141 (90%), Positives = 129/141 (91%), Gaps = 2/141 (1%)
Frame = +2
Query: 92 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 271
NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI
Sbjct: 39 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 98
Query: 272 QVMEEAPDADDLMLAENT--XXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELL 445
QVMEEAPDADDL+LAENT QVLSSVESEIGRTTDPVRMYMREMGTVELL
Sbjct: 99 QVMEEAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 158
Query: 446 TREGEIDIAKRIEDGINQVQC 508
TREGEIDIAKRIEDGINQVQC
Sbjct: 159 TREGEIDIAKRIEDGINQVQC 179
>emb|CDQ55114.1| rpoD [Klebsiella pneumoniae]
Length = 625
Score = 253 bits (646), Expect = 4e-78
Identities = 130/145 (89%), Positives = 130/145 (89%)
Frame = +2
Query: 74 PTPTS*NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQM 253
PTP KCGYRLMEQNPQSQLKLLV RGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQM
Sbjct: 7 PTPIKRIKCGYRLMEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQM 66
Query: 254 INDMGIQVMEEAPDADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGT 433
INDMGIQVMEEAPDADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGT
Sbjct: 67 INDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGT 126
Query: 434 VELLTREGEIDIAKRIEDGINQVQC 508
VELLTREGEIDIAKRIEDGINQVQC
Sbjct: 127 VELLTREGEIDIAKRIEDGINQVQC 151
>emb|CCI78737.1| rpoD [Klebsiella pneumoniae subsp. rhinoscleromatis SB3432]
Length = 630
Score = 253 bits (646), Expect = 4e-78
Identities = 130/145 (89%), Positives = 130/145 (89%)
Frame = +2
Query: 74 PTPTS*NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQM 253
PTP KCGYRLMEQNPQSQLKLLV RGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQM
Sbjct: 7 PTPIKRIKCGYRLMEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQM 66
Query: 254 INDMGIQVMEEAPDADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGT 433
INDMGIQVMEEAPDADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGT
Sbjct: 67 INDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGT 126
Query: 434 VELLTREGEIDIAKRIEDGINQVQC 508
VELLTREGEIDIAKRIEDGINQVQC
Sbjct: 127 VELLTREGEIDIAKRIEDGINQVQC 151
>dbj|BAH65247.1| RNA polymerase sigma factor [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gb|EJK89116.1| RNA polymerase sigma factor RpoD [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gb|AFQ64029.1| RNA polymerase sigma factor RpoD [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gb|AHE42605.1| RNA polymerase sigma factor RpoD [Klebsiella pneumoniae subsp.
pneumoniae Kp13]
gb|AHM77509.1| RNA polymerase sigma factor rpoD [Klebsiella pneumoniae
30684/NJST258_2]
gb|AHM83093.1| RNA polymerase sigma factor rpoD [Klebsiella pneumoniae
30660/NJST258_1]
Length = 632
Score = 253 bits (646), Expect = 4e-78
Identities = 130/145 (89%), Positives = 130/145 (89%)
Frame = +2
Query: 74 PTPTS*NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQM 253
PTP KCGYRLMEQNPQSQLKLLV RGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQM
Sbjct: 7 PTPIKRIKCGYRLMEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQM 66
Query: 254 INDMGIQVMEEAPDADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGT 433
INDMGIQVMEEAPDADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGT
Sbjct: 67 INDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGT 126
Query: 434 VELLTREGEIDIAKRIEDGINQVQC 508
VELLTREGEIDIAKRIEDGINQVQC
Sbjct: 127 VELLTREGEIDIAKRIEDGINQVQC 151
>ref|WP_080097127.1| RNA polymerase sigma factor RpoD, partial [Salmonella enterica]
Length = 430
Score = 247 bits (631), Expect = 5e-78
Identities = 128/141 (90%), Positives = 129/141 (91%), Gaps = 2/141 (1%)
Frame = +2
Query: 92 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 271
NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI
Sbjct: 39 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 98
Query: 272 QVMEEAPDADDLMLAENT--XXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELL 445
QVMEEAPDADDL+LAENT QVLSSVESEIGRTTDPVRMYMREMGTVELL
Sbjct: 99 QVMEEAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 158
Query: 446 TREGEIDIAKRIEDGINQVQC 508
TREGEIDIAKRIEDGINQVQC
Sbjct: 159 TREGEIDIAKRIEDGINQVQC 179
>ref|WP_080097734.1| RNA polymerase sigma factor RpoD, partial [Salmonella enterica]
Length = 438
Score = 247 bits (631), Expect = 7e-78
Identities = 128/141 (90%), Positives = 129/141 (91%), Gaps = 2/141 (1%)
Frame = +2
Query: 92 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 271
NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI
Sbjct: 39 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 98
Query: 272 QVMEEAPDADDLMLAENT--XXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELL 445
QVMEEAPDADDL+LAENT QVLSSVESEIGRTTDPVRMYMREMGTVELL
Sbjct: 99 QVMEEAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 158
Query: 446 TREGEIDIAKRIEDGINQVQC 508
TREGEIDIAKRIEDGINQVQC
Sbjct: 159 TREGEIDIAKRIEDGINQVQC 179
>ref|WP_100752977.1| hypothetical protein, partial [Escherichia coli]
gb|PJW96343.1| hypothetical protein CWI54_27665, partial [Escherichia coli]
gb|PJW96348.1| hypothetical protein CWI54_27640, partial [Escherichia coli]
gb|PJW96388.1| hypothetical protein CWI54_27420, partial [Escherichia coli]
gb|PJW96392.1| hypothetical protein CWI54_27395, partial [Escherichia coli]
gb|PJW96397.1| hypothetical protein CWI54_27370, partial [Escherichia coli]
Length = 162
Score = 237 bits (605), Expect = 1e-77
Identities = 122/132 (92%), Positives = 122/132 (92%)
Frame = +2
Query: 113 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 292
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
Sbjct: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60
Query: 293 DADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 472
DADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
Sbjct: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120
Query: 473 KRIEDGINQVQC 508
KRIEDGINQVQC
Sbjct: 121 KRIEDGINQVQC 132
>gb|KFH88529.1| RNA polymerase sigma factor RpoD, partial [Escherichia coli]
Length = 163
Score = 237 bits (605), Expect = 1e-77
Identities = 122/132 (92%), Positives = 122/132 (92%)
Frame = +2
Query: 113 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 292
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
Sbjct: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60
Query: 293 DADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 472
DADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
Sbjct: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120
Query: 473 KRIEDGINQVQC 508
KRIEDGINQVQC
Sbjct: 121 KRIEDGINQVQC 132
>gb|KFH79320.1| RNA polymerase sigma factor RpoD, partial [Escherichia coli]
Length = 164
Score = 237 bits (605), Expect = 1e-77
Identities = 122/132 (92%), Positives = 122/132 (92%)
Frame = +2
Query: 113 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 292
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
Sbjct: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60
Query: 293 DADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 472
DADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
Sbjct: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120
Query: 473 KRIEDGINQVQC 508
KRIEDGINQVQC
Sbjct: 121 KRIEDGINQVQC 132
>ref|WP_080085495.1| RNA polymerase sigma factor RpoD, partial [Salmonella enterica]
Length = 463
Score = 247 bits (631), Expect = 1e-77
Identities = 128/141 (90%), Positives = 129/141 (91%), Gaps = 2/141 (1%)
Frame = +2
Query: 92 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 271
NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI
Sbjct: 39 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 98
Query: 272 QVMEEAPDADDLMLAENT--XXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELL 445
QVMEEAPDADDL+LAENT QVLSSVESEIGRTTDPVRMYMREMGTVELL
Sbjct: 99 QVMEEAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 158
Query: 446 TREGEIDIAKRIEDGINQVQC 508
TREGEIDIAKRIEDGINQVQC
Sbjct: 159 TREGEIDIAKRIEDGINQVQC 179
>ref|WP_071597710.1| RNA polymerase sigma factor RpoD, partial [Dickeya paradisiaca]
Length = 602
Score = 251 bits (640), Expect = 2e-77
Identities = 127/138 (92%), Positives = 128/138 (92%)
Frame = +2
Query: 95 KCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQ 274
KCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDI+DSDQIEDIIQMINDMGIQ
Sbjct: 3 KCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQ 62
Query: 275 VMEEAPDADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELLTRE 454
VMEEAPDADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGTVELLTRE
Sbjct: 63 VMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTRE 122
Query: 455 GEIDIAKRIEDGINQVQC 508
GEIDIAKRIEDGINQVQC
Sbjct: 123 GEIDIAKRIEDGINQVQC 140
>ref|WP_080218334.1| RNA polymerase sigma factor RpoD, partial [Salmonella enterica]
Length = 476
Score = 247 bits (631), Expect = 2e-77
Identities = 128/141 (90%), Positives = 129/141 (91%), Gaps = 2/141 (1%)
Frame = +2
Query: 92 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 271
NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI
Sbjct: 39 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 98
Query: 272 QVMEEAPDADDLMLAENT--XXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELL 445
QVMEEAPDADDL+LAENT QVLSSVESEIGRTTDPVRMYMREMGTVELL
Sbjct: 99 QVMEEAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 158
Query: 446 TREGEIDIAKRIEDGINQVQC 508
TREGEIDIAKRIEDGINQVQC
Sbjct: 159 TREGEIDIAKRIEDGINQVQC 179
>ref|WP_080181924.1| RNA polymerase sigma factor RpoD, partial [Salmonella enterica]
Length = 483
Score = 247 bits (631), Expect = 2e-77
Identities = 128/141 (90%), Positives = 129/141 (91%), Gaps = 2/141 (1%)
Frame = +2
Query: 92 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 271
NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI
Sbjct: 39 NKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI 98
Query: 272 QVMEEAPDADDLMLAENT--XXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELL 445
QVMEEAPDADDL+LAENT QVLSSVESEIGRTTDPVRMYMREMGTVELL
Sbjct: 99 QVMEEAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 158
Query: 446 TREGEIDIAKRIEDGINQVQC 508
TREGEIDIAKRIEDGINQVQC
Sbjct: 159 TREGEIDIAKRIEDGINQVQC 179
>gb|PQN65446.1| RNA polymerase sigma factor RpoD, partial [Shigella flexneri]
Length = 183
Score = 237 bits (605), Expect = 2e-77
Identities = 122/132 (92%), Positives = 122/132 (92%)
Frame = +2
Query: 113 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 292
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
Sbjct: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60
Query: 293 DADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 472
DADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
Sbjct: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120
Query: 473 KRIEDGINQVQC 508
KRIEDGINQVQC
Sbjct: 121 KRIEDGINQVQC 132
>gb|KFH96361.1| RNA polymerase sigma factor RpoD, partial [Escherichia coli]
gb|KFH97932.1| RNA polymerase sigma factor RpoD, partial [Escherichia coli]
Length = 186
Score = 237 bits (605), Expect = 3e-77
Identities = 122/132 (92%), Positives = 122/132 (92%)
Frame = +2
Query: 113 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 292
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
Sbjct: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60
Query: 293 DADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 472
DADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
Sbjct: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120
Query: 473 KRIEDGINQVQC 508
KRIEDGINQVQC
Sbjct: 121 KRIEDGINQVQC 132
>gb|KFH76051.1| RNA polymerase sigma factor RpoD, partial [Escherichia coli]
Length = 187
Score = 237 bits (605), Expect = 3e-77
Identities = 122/132 (92%), Positives = 122/132 (92%)
Frame = +2
Query: 113 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 292
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
Sbjct: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60
Query: 293 DADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 472
DADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
Sbjct: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120
Query: 473 KRIEDGINQVQC 508
KRIEDGINQVQC
Sbjct: 121 KRIEDGINQVQC 132
>gb|KFH78577.1| RNA polymerase sigma factor RpoD, partial [Escherichia coli]
Length = 189
Score = 237 bits (605), Expect = 3e-77
Identities = 122/132 (92%), Positives = 122/132 (92%)
Frame = +2
Query: 113 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 292
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
Sbjct: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60
Query: 293 DADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 472
DADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
Sbjct: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120
Query: 473 KRIEDGINQVQC 508
KRIEDGINQVQC
Sbjct: 121 KRIEDGINQVQC 132
>ref|WP_077246218.1| RNA polymerase sigma factor RpoD [Dickeya dadantii]
Length = 626
Score = 251 bits (640), Expect = 3e-77
Identities = 127/138 (92%), Positives = 128/138 (92%)
Frame = +2
Query: 95 KCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQ 274
KCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDI+DSDQIEDIIQMINDMGIQ
Sbjct: 10 KCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQ 69
Query: 275 VMEEAPDADDLMLAENTXXXXXXXXXXQVLSSVESEIGRTTDPVRMYMREMGTVELLTRE 454
VMEEAPDADDLMLAENT QVLSSVESEIGRTTDPVRMYMREMGTVELLTRE
Sbjct: 70 VMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTRE 129
Query: 455 GEIDIAKRIEDGINQVQC 508
GEIDIAKRIEDGINQVQC
Sbjct: 130 GEIDIAKRIEDGINQVQC 147