BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Acanthopanax21_contig00000113
         (1567 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|WP_104992915.1| RNA polymerase sigma factor RpoD [Escherichi...   935   0.0  
pdb|5VT0|L Chain L, Escherichia coli 6S RNA derivative in comple...   935   0.0  
ref|WP_000437376.1| RNA polymerase sigma factor RpoD [Escherichi...   935   0.0  
pdb|4LJZ|F Chain F, Crystal Structure Analysis Of The E.coli Hol...   935   0.0  
pdb|4JKR|F Chain F, Crystal Structure Of E. Coli Rna Polymerase ...   935   0.0  
ref|WP_097733610.1| RNA polymerase sigma factor RpoD [Escherichi...   933   0.0  
ref|WP_097295781.1| RNA polymerase sigma factor RpoD [Escherichi...   933   0.0  
ref|WP_096996051.1| RNA polymerase sigma factor RpoD [Escherichi...   933   0.0  
ref|WP_089502708.1| RNA polymerase sigma factor RpoD [Escherichi...   933   0.0  
ref|WP_000437375.1| MULTISPECIES: RNA polymerase sigma factor Rp...   933   0.0  
ref|WP_081508771.1| RNA polymerase sigma factor RpoD [Escherichi...   933   0.0  
gb|AAA24601.1| RNA polymerase sigma-subunit [Escherichia coli]        933   0.0  
ref|WP_001639895.1| RNA polymerase sigma factor RpoD [Escherichi...   933   0.0  
ref|WP_001463676.1| RNA polymerase sigma factor RpoD [Escherichi...   933   0.0  
ref|WP_001394856.1| RNA polymerase sigma factor RpoD [Escherichi...   933   0.0  
ref|WP_001705450.1| RNA polymerase sigma factor RpoD [Escherichi...   933   0.0  
ref|WP_001686787.1| RNA polymerase sigma factor RpoD [Escherichi...   933   0.0  
ref|WP_047792213.1| RNA polymerase sigma factor RpoD [Escherichi...   932   0.0  
ref|WP_097728914.1| RNA polymerase sigma factor RpoD [Escherichi...   932   0.0  
ref|WP_097508891.1| RNA polymerase sigma factor RpoD [Escherichi...   932   0.0  

>ref|WP_104992915.1| RNA polymerase sigma factor RpoD [Escherichia coli]
          Length = 613

 Score =  935 bits (2416), Expect = 0.0
 Identities = 484/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>pdb|5VT0|L Chain L, Escherichia coli 6S RNA derivative in complex with
            Escherichia coli RNA polymerase sigma70-holoenzyme
          Length = 523

 Score =  935 bits (2416), Expect = 0.0
 Identities = 484/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 18   VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 77

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 78   PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 137

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 138  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 197

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 198  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 257

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 258  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 317

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 318  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 377

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 378  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 437

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI
Sbjct: 438  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 497

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 498  RQIEAKALRKLRHPSRSEVLRSFLDD 523


>ref|WP_000437376.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 ref|NP_417539.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli str. K-12
            substr. MG1655]
 sp|P00579.2|RPOD_ECOLI RecName: Full=RNA polymerase sigma factor RpoD; AltName:
            Full=Sigma-70
 pdb|4JK1|X Chain X, X-ray Crystal Structure Of Escherichia Coli Sigma70
            Holoenzyme In Complex With Guanosine Tetraphosphate
            (ppgpp)
 pdb|4JK1|Y Chain Y, X-ray Crystal Structure Of Escherichia Coli Sigma70
            Holoenzyme In Complex With Guanosine Tetraphosphate
            (ppgpp)
 pdb|4JK2|X Chain X, X-ray Crystal Structure Of Escherichia Coli Sigma70
            Holoenzyme In Complex With Guanosine Pentaphosphate
            (pppgpp)
 pdb|4JK2|Y Chain Y, X-ray Crystal Structure Of Escherichia Coli Sigma70
            Holoenzyme In Complex With Guanosine Pentaphosphate
            (pppgpp)
 pdb|4KMU|X Chain X, X-ray Crystal Structure Of The Escherichia Coli Rna
            Polymerase In Complex With Rifampin
 pdb|4KMU|Y Chain Y, X-ray Crystal Structure Of The Escherichia Coli Rna
            Polymerase In Complex With Rifampin
 pdb|4KN4|X Chain X, X-ray Crystal Structure Of The Escherichia Coli Rna
            Polymerase In Complex With Benzoxazinorifamycin-2b
 pdb|4KN4|Y Chain Y, X-ray Crystal Structure Of The Escherichia Coli Rna
            Polymerase In Complex With Benzoxazinorifamycin-2b
 pdb|4KN7|X Chain X, X-ray Crystal Structure Of The Escherichia Coli Rna
            Polymerase In Complex With Benzoxazinorifamycin-2c
 pdb|4KN7|Y Chain Y, X-ray Crystal Structure Of The Escherichia Coli Rna
            Polymerase In Complex With Benzoxazinorifamycin-2c
 pdb|4LK1|F Chain F, Crystal Structure Analysis Of The E.coli Holoenzyme
 pdb|4LK1|L Chain L, Crystal Structure Analysis Of The E.coli Holoenzyme
 pdb|4LLG|F Chain F, Crystal Structure Analysis Of The E.coli Holoenzyme/gp2
            Complex
 pdb|4LLG|L Chain L, Crystal Structure Analysis Of The E.coli Holoenzyme/gp2
            Complex
 pdb|4MEX|F Chain F, Crystal Structure Of Escherichia Coli Rna Polymerase In
            Complex With Salinamide A
 pdb|4MEX|L Chain L, Crystal Structure Of Escherichia Coli Rna Polymerase In
            Complex With Salinamide A
 pdb|4MEY|F Chain F, Crystal Structure Of Escherichia Coli Rna Polymerase
            Holoenzyme
 pdb|4MEY|L Chain L, Crystal Structure Of Escherichia Coli Rna Polymerase
            Holoenzyme
 pdb|4YFK|F Chain F, Escherichia Coli Rna Polymerase In Complex With Squaramide
            Compound 8.
 pdb|4YFK|L Chain L, Escherichia Coli Rna Polymerase In Complex With Squaramide
            Compound 8.
 pdb|4YFN|F Chain F, Escherichia Coli Rna Polymerase In Complex With Squaramide
            Compound 14
            (n-[3,
            4-dioxo-2-(4-{[4-(trifluoromethyl)benzyl]amino}piperidin-
            1-yl)
            Cyclobut-1-en-1-yl]-3,5-dimethyl-1,
            2-oxazole-4-sulfonamide)
 pdb|4YFN|L Chain L, Escherichia Coli Rna Polymerase In Complex With Squaramide
            Compound 14
            (n-[3,
            4-dioxo-2-(4-{[4-(trifluoromethyl)benzyl]amino}piperidin-
            1-yl)
            Cyclobut-1-en-1-yl]-3,5-dimethyl-1,
            2-oxazole-4-sulfonamide)
 pdb|4YFX|F Chain F, Escherichia Coli Rna Polymerase In Complex With Myxopyronin
            B
 pdb|4YFX|L Chain L, Escherichia Coli Rna Polymerase In Complex With Myxopyronin
            B
 pdb|4YG2|F Chain F, X-ray Crystal Structur Of Escherichia Coli Rna Polymerase
            Sigma70 Holoenzyme
 pdb|4YG2|L Chain L, X-ray Crystal Structur Of Escherichia Coli Rna Polymerase
            Sigma70 Holoenzyme
 pdb|4ZH2|F Chain F, Crystal Structure Of Escherichia Coli Rna Polymerase In
            Complex With Cbr703
 pdb|4ZH2|L Chain L, Crystal Structure Of Escherichia Coli Rna Polymerase In
            Complex With Cbr703
 pdb|4ZH3|F Chain F, Crystal Structure Of Escherichia Coli Rna Polymerase In
            Complex With Cbrh16-br
 pdb|4ZH3|L Chain L, Crystal Structure Of Escherichia Coli Rna Polymerase In
            Complex With Cbrh16-br
 pdb|4ZH4|F Chain F, Crystal Structure Of Escherichia Coli Rna Polymerase In
            Complex With Cbrp18
 pdb|4ZH4|L Chain L, Crystal Structure Of Escherichia Coli Rna Polymerase In
            Complex With Cbrp18
 pdb|5UAH|F Chain F, Escherichia Coli Rna Polymerase And Rifampin Complex, Rpob
            D516v Mutant
 pdb|5UAH|L Chain L, Escherichia Coli Rna Polymerase And Rifampin Complex, Rpob
            D516v Mutant
 pdb|5UAJ|F Chain F, Escherichia Coli Rna Polymerase Rpob S531l Mutant
 pdb|5UAJ|L Chain L, Escherichia Coli Rna Polymerase Rpob S531l Mutant
 pdb|5UAL|F Chain F, Escherichia Coli Rna Polymerase And Rifampin Complex, Rpob
            S531l Mutant
 pdb|5UAL|L Chain L, Escherichia Coli Rna Polymerase And Rifampin Complex, Rpob
            S531l Mutant
 pdb|5UAQ|F Chain F, Escherichia Coli Rna Polymerase Rpob H526y Mutant
 pdb|5UAQ|L Chain L, Escherichia Coli Rna Polymerase Rpob H526y Mutant
 pdb|5UAC|F Chain F, Escherichia Coli Rna Polymerase And Rifampin Complex,
            Wild-type
 pdb|5UAC|L Chain L, Escherichia Coli Rna Polymerase And Rifampin Complex,
            Wild-type
 pdb|5UAG|F Chain F, Escherichia Coli Rna Polymerase Mutant - Rpob D516v
 pdb|5UAG|L Chain L, Escherichia Coli Rna Polymerase Mutant - Rpob D516v
 pdb|5VSW|F Chain F, X-ray crystal structure of Escherichia coli RNA polymerase
            and DksA/ppGpp complex
 pdb|5VSW|L Chain L, X-ray crystal structure of Escherichia coli RNA polymerase
            and DksA/ppGpp complex
 pdb|5W1S|F Chain F, X-ray crystal structure of Escherichia coli RNA polymerase
            and TraR complex
 pdb|5W1S|L Chain L, X-ray crystal structure of Escherichia coli RNA polymerase
            and TraR complex
 pdb|5W1T|F Chain F, X-ray crystal structure of Escherichia coli RNA polymerase
            and DksA complex
 pdb|5W1T|L Chain L, X-ray crystal structure of Escherichia coli RNA polymerase
            and DksA complex
 pdb|6BYU|F Chain F, X-ray crystal structure of Escherichia coli RNA polymerase
            (RpoB-H526Y) and ppApp complex
 pdb|6BYU|L Chain L, X-ray crystal structure of Escherichia coli RNA polymerase
            (RpoB-H526Y) and ppApp complex
 pdb|6C9Y|F Chain F, Cryo-EM structure of E. coli RNAP sigma70 holoenzyme
 pdb|6CA0|F Chain F, Cryo-EM structure of E. coli RNAP sigma70 open complex
 gb|AAA89147.1| CG Site No. 231; alternate gene name alt [Escherichia coli str. K-12
            substr. MG1655]
 gb|AAC76103.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli str. K-12
            substr. MG1655]
 gb|AAZ80070.1| RpoD [Escherichia coli LW1655F+]
 dbj|BAE77118.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli str. K-12
            substr. W3110]
 gb|ACB04152.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli str. K-12
            substr. DH10B]
 gb|ACR65499.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli BW2952]
 gb|ACX38320.1| RNA polymerase, sigma 70 subunit, RpoD [Escherichia coli DH1]
 dbj|BAJ44819.1| RNA polymerase sigma factor RpoD [Escherichia coli DH1]
 gb|EGU25462.1| RNA polymerase sigma factor RpoD [Escherichia coli XH140A]
 gb|EGV46819.1| RNA polymerase sigma factor RpoD [Escherichia coli XH001]
 dbj|BAL39719.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli str. K-12
            substr. MDS42]
 gb|EIE38210.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli J53]
 gb|EMD06490.1| RNA polymerase sigma factor RpoD [Escherichia coli S17]
 gb|AGX35049.1| RNA polymerase, sigma 70 (sigma D) factor [synthetic Escherichia coli
            C321.deltaA]
 emb|CDJ73787.1| RNA polymerase sigma factor RpoD [Escherichia coli str. K-12 substr.
            MC4100]
 gb|AIF38373.1| RNA polymerase sigma factor RpoD [Escherichia coli KLY]
 emb|CEE08967.1| RNA polymerase sigma factor rpoD [Escherichia coli]
 gb|AIN33418.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli BW25113]
 gb|KGA86544.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|CDY61740.1| RNA polymerase, sigma 70 (sigma D) factor, subunit of RNA polymerase
            sigma 70 [Escherichia coli]
 emb|CDZ21854.1| RNA polymerase, sigma 70 (sigma D) factor, subunit of RNA polymerase
            sigma 70 [Escherichia coli]
 gb|KGL69886.1| RNA polymerase sigma factor RpoD [Escherichia coli NCTC 50110]
 gb|AIZ29535.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli ER2796]
 gb|AIZ52860.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli K-12]
 gb|AIZ89911.1| RNA polymerase sigma factor RpoD [Escherichia coli str. K-12 substr.
            MG1655]
 emb|CQR82499.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli K-12]
 gb|AKD62525.1| RNA polymerase sigma factor RpoD [Escherichia coli K-12]
 gb|AKD66898.1| RNA polymerase sigma factor RpoD [Escherichia coli K-12]
 gb|AKD71252.1| RNA polymerase sigma factor RpoD [Escherichia coli K-12]
 gb|AKD75619.1| RNA polymerase sigma factor RpoD [Escherichia coli K-12]
 gb|AKD80028.1| RNA polymerase sigma factor RpoD [Escherichia coli K-12]
 gb|AKD84397.1| RNA polymerase sigma factor RpoD [Escherichia coli K-12]
 gb|AKD88754.1| RNA polymerase sigma factor RpoD [Escherichia coli K-12]
 gb|AKD93185.1| RNA polymerase sigma factor RpoD [Escherichia coli K-12]
 gb|AKF56848.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|AKF60988.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|AKF65126.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|AKF69266.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|AKF73405.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|AKK15092.1| RNA polymerase, sigma 70 (sigma D) factor protein [Escherichia coli
            K-12]
 gb|AKK18852.1| RNA polymerase, sigma 70 (sigma D) factor protein [Escherichia coli
            K-12]
 gb|AKR21894.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AKR26249.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AKR30714.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ALB33111.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|CUH57332.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli KRX]
 emb|CUQ98315.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ALI39231.1| RNA polymerase subunit sigma [Escherichia coli str. K-12 substr.
            MG1655]
 gb|ALI43632.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|ALI48027.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|ALQ71322.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|AMC95976.1| RNA polymerase subunit sigma [Escherichia coli str. K-12 substr.
            MG1655]
 gb|AMH31690.1| RNA polymerase subunit sigma [Escherichia coli K-12]
 gb|AMH36411.1| RNA polymerase subunit sigma [Escherichia coli K-12]
 emb|CUW22513.1| Sigma-70 [Escherichia coli]
 gb|AML00423.1| RNA polymerase subunit sigma [Escherichia coli str. K-12 substr.
            MG1655]
 gb|KXU67076.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXU69621.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXU77591.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|ANK07886.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OCW81105.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AOO71292.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|SCQ10310.1| Sigma-70 [Escherichia coli]
 gb|APC53239.1| RNA polymerase sigma factor RpoD [Escherichia coli str. K-12 substr.
            W3110]
 gb|APQ20057.1| Sigma-70 [Escherichia coli]
 gb|AQP92974.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AQZ29073.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORE80292.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|SMH31940.1| RNA polymerase, sigma 70 subunit, RpoD [Escherichia coli]
 gb|ARM41521.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|ASO02140.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ21323.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ23311.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ26939.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ35209.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ35794.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ43577.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ47881.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ50775.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ56648.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUG17784.1| RNA polymerase sigma factor RpoD [Escherichia coli str. K-12 substr.
            MG1655]
 gb|PNS28569.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AVD30312.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AVI53239.1| RNA polymerase sigma factor RpoD [Escherichia coli str. K-12 substr.
            MG1655]
          Length = 613

 Score =  935 bits (2416), Expect = 0.0
 Identities = 484/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>pdb|4LJZ|F Chain F, Crystal Structure Analysis Of The E.coli Holoenzyme
 pdb|4LJZ|L Chain L, Crystal Structure Analysis Of The E.coli Holoenzyme
 pdb|4LK0|F Chain F, Crystal Structure Analysis Of The E.coli Holoenzyme/t7 Gp2
            Complex
 pdb|4LK0|L Chain L, Crystal Structure Analysis Of The E.coli Holoenzyme/t7 Gp2
            Complex
 pdb|4XSX|F Chain F, Crystal structure of CBR 703 bound to Escherichia coli RNA
            polymerase holoenzyme
 pdb|4XSX|L Chain L, Crystal structure of CBR 703 bound to Escherichia coli RNA
            polymerase holoenzyme
 pdb|4XSY|F Chain F, Crystal structure of CBR 9379 bound to Escherichia coli RNA
            polymerase holoenzyme
 pdb|4XSY|L Chain L, Crystal structure of CBR 9379 bound to Escherichia coli RNA
            polymerase holoenzyme
 pdb|4XSZ|F Chain F, Crystal structure of CBR 9393 bound to Escherichia coli RNA
            polymerase holoenzyme
 pdb|4XSZ|L Chain L, Crystal structure of CBR 9393 bound to Escherichia coli RNA
            polymerase holoenzyme
          Length = 522

 Score =  935 bits (2416), Expect = 0.0
 Identities = 484/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 17   VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 76

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 77   PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 136

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 137  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 196

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 197  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 256

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 257  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 316

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 317  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 376

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 377  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 436

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI
Sbjct: 437  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 496

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 497  RQIEAKALRKLRHPSRSEVLRSFLDD 522


>pdb|4JKR|F Chain F, Crystal Structure Of E. Coli Rna Polymerase In Complex With
            Ppgpp
 pdb|4JKR|L Chain L, Crystal Structure Of E. Coli Rna Polymerase In Complex With
            Ppgpp
 pdb|4YLN|F Chain F, E. Coli Transcription Initiation Complex - 17-bp Spacer And
            4-nt Rna
 pdb|4YLN|L Chain L, E. Coli Transcription Initiation Complex - 17-bp Spacer And
            4-nt Rna
 pdb|4YLN|R Chain R, E. Coli Transcription Initiation Complex - 17-bp Spacer And
            4-nt Rna
 pdb|4YLO|F Chain F, E. Coli Transcription Initiation Complex - 16-bp Spacer And
            4-nt Rna
 pdb|4YLO|L Chain L, E. Coli Transcription Initiation Complex - 16-bp Spacer And
            4-nt Rna
 pdb|4YLO|R Chain R, E. Coli Transcription Initiation Complex - 16-bp Spacer And
            4-nt Rna
 pdb|4YLP|F Chain F, E. Coli Transcription Initiation Complex - 16-bp Spacer And
            5-nt Rna
 pdb|4YLP|L Chain L, E. Coli Transcription Initiation Complex - 16-bp Spacer And
            5-nt Rna
 pdb|4YLP|R Chain R, E. Coli Transcription Initiation Complex - 16-bp Spacer And
            5-nt Rna
 pdb|6B6H|F Chain F, The cryo-EM structure of a bacterial class I transcription
            activation complex
          Length = 628

 Score =  935 bits (2416), Expect = 0.0
 Identities = 484/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 123  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 182

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 183  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 242

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 243  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 302

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 303  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 362

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 363  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 422

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 423  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 482

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 483  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 542

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI
Sbjct: 543  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 602

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 603  RQIEAKALRKLRHPSRSEVLRSFLDD 628


>ref|WP_097733610.1| RNA polymerase sigma factor RpoD [Escherichia coli]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGNDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_097295781.1| RNA polymerase sigma factor RpoD [Escherichia coli]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLGDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_096996051.1| RNA polymerase sigma factor RpoD [Escherichia coli]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_089502708.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OXK73894.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OXK77315.1| RNA polymerase sigma factor RpoD [Escherichia coli]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_000437375.1| MULTISPECIES: RNA polymerase sigma factor RpoD [Proteobacteria]
 gb|ABV07478.1| RNA polymerase sigma factor RpoD [Escherichia coli HS]
 gb|ACA76308.1| RNA polymerase, sigma 70 subunit, RpoD [Escherichia coli ATCC 8739]
 gb|EDX37267.1| RNA polymerase sigma factor RpoD [Escherichia coli 101-1]
 gb|EEH71882.1| RNA polymerase sigma factor rpoD [Escherichia sp. 1_1_43]
 emb|CAQ33404.1| RNA polymerase, sigma 70 (sigma D) factor, subunit of RNA polymerase
            sigma 70 [Escherichia coli BL21(DE3)]
 gb|ACT27743.1| RNA polymerase, sigma 70 subunit, RpoD [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gb|ACT40586.1| RNA polymerase sigma factor [Escherichia coli B str. REL606]
 gb|ACT44741.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli
            BL21(DE3)]
 gb|EFI89795.1| RNA polymerase sigma factor RpoD [Escherichia coli MS 196-1]
 gb|EFJ64681.1| RNA polymerase sigma factor RpoD [Escherichia coli MS 175-1]
 gb|EFJ85927.1| RNA polymerase sigma factor RpoD [Escherichia coli MS 84-1]
 gb|EFK13578.1| RNA polymerase sigma factor RpoD [Escherichia coli MS 116-1]
 gb|EFK23870.1| RNA polymerase sigma factor RpoD [Escherichia coli MS 187-1]
 gb|EFK70631.1| RNA polymerase sigma factor RpoD [Escherichia coli MS 124-1]
 gb|EFK91725.1| RNA polymerase sigma factor RpoD [Escherichia coli MS 146-1]
 emb|CBJ02838.1| RNA polymerase sigma-70 factor [Escherichia coli ETEC H10407]
 gb|EFP99823.1| RNA polymerase sigma factor rpoD [Escherichia coli 1827-70]
 gb|EFU36949.1| RNA polymerase sigma factor RpoD [Escherichia coli MS 85-1]
 gb|EFU97750.1| RNA polymerase sigma factor rpoD [Escherichia coli 3431]
 gb|EGB32226.1| RNA polymerase sigma protein RpoD [Escherichia coli E1520]
 gb|EGB38014.1| RNA polymerase sigma proteinRpoD [Escherichia coli E482]
 gb|EGB56615.1| RNA polymerase sigma proteinRpoD [Escherichia coli H489]
 gb|EGB67035.1| RNA polymerase sigma proteinRpoD [Escherichia coli TA007]
 gb|EGI09461.1| RNA polymerase sigma factor RpoD [Escherichia coli H736]
 gb|AEE58356.1| RNA polymerase sigma factor protein RpoD [Escherichia coli UMNK88]
 gb|AEJ58454.1| RNA polymerase sigma factor rpoD [Escherichia coli UMNF18]
 gb|EGW92682.1| RNA polymerase sigma factor rpoD [Escherichia coli STEC_EH250]
 gb|EGX04754.1| RNA polymerase sigma factor rpoD [Escherichia coli G58-1]
 gb|EGX15699.1| RNA polymerase sigma factor rpoD [Escherichia coli STEC_S1191]
 gb|EGX22039.1| RNA polymerase sigma factor rpoD [Escherichia coli TX1999]
 gb|EHV53540.1| sigma70 factor RNA polymerase, sigma 70 (sigma D) factor [Escherichia
            coli DEC6B]
 gb|EHV54820.1| RNA polymerase sigma factor rpoD [Escherichia coli DEC6A]
 gb|EHV57620.1| RNA polymerase sigma factor rpoD [Escherichia coli DEC6C]
 gb|EHV68739.1| RNA polymerase sigma factor rpoD [Escherichia coli DEC6D]
 gb|EHV71821.1| sigma70 factor RNA polymerase, sigma 70 (sigma D) factor [Escherichia
            coli DEC6E]
 gb|EHV76602.1| RNA polymerase sigma factor rpoD [Escherichia coli DEC7A]
 gb|EHV85265.1| sigma70 factor RNA polymerase, sigma 70 (sigma D) factor [Escherichia
            coli DEC7C]
 gb|EHV88470.1| sigma70 factor RNA polymerase, sigma 70 (sigma D) factor [Escherichia
            coli DEC7D]
 gb|EHV99142.1| RNA polymerase sigma factor rpoD [Escherichia coli DEC7E]
 gb|AFG41994.1| RNA polymerase sigma factor RpoD [Escherichia coli P12b]
 gb|EIF17023.1| RNA polymerase sigma factor RpoD [Escherichia coli O32:H37 str. P4]
 gb|EIF85568.1| RNA polymerase sigma factor rpoD [Escherichia coli M919]
 gb|EIG69180.1| RNA polymerase sigma factor rpoD [Escherichia sp. 4_1_40B]
 gb|EII48485.1| RNA polymerase sigma factor RpoD [Escherichia coli 2.3916]
 gb|EII67309.1| RNA polymerase sigma factor RpoD [Escherichia coli 2.4168]
 gb|EII74145.1| RNA polymerase sigma factor RpoD [Escherichia coli 3.2303]
 gb|EIJ02969.1| RNA polymerase sigma factor RpoD [Escherichia coli B41]
 gb|EIQ61431.1| RNA polymerase sigma factor rpoD [Escherichia coli EPECa12]
 gb|EKI16936.1| RNA polymerase sigma factor [Escherichia coli TW15901]
 gb|EKI25469.1| RNA polymerase sigma factor [Escherichia coli TW00353]
 gb|EKI36236.1| RNA polymerase sigma factor [Escherichia coli 3006]
 gb|EKI50344.1| RNA polymerase sigma factor [Escherichia coli N1]
 gb|EKJ83827.1| RNA polymerase sigma factor RpoD [Escherichia coli AD30]
 gb|EKK41591.1| RNA polymerase sigma factor [Escherichia coli 8.0566]
 gb|EKK42574.1| RNA polymerase sigma factor rpoD [Escherichia coli 8.0569]
 emb|CCK48374.1| RNA polymerase, sigma(70) factor; regulation of proteins induced at
            high temperatures [Escherichia coli chi7122]
 emb|CCJ45688.1| RNA polymerase, sigma(70) factor [Escherichia coli]
 gb|ELB97547.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE2]
 gb|ELC14387.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE10]
 gb|ELC58126.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE44]
 gb|ELD28232.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE212]
 gb|ELD76351.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE235]
 gb|ELD97039.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE51]
 gb|ELE17134.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE56]
 gb|ELE58121.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE76]
 gb|ELE62467.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE77]
 gb|ELE69911.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE81]
 gb|ELE97179.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE111]
 gb|ELE97802.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE116]
 gb|ELF07128.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE119]
 gb|ELF18198.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE156]
 gb|ELF32084.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE161]
 gb|ELF36034.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE171]
 gb|ELF71527.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE42]
 gb|ELH01353.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE154]
 gb|ELH45878.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE197]
 gb|ELI40580.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE122]
 gb|ELJ08169.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE157]
 gb|ELJ12029.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE163]
 gb|ELJ21989.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE166]
 gb|ELJ55730.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE232]
 emb|CCQ00844.1| RNA polymerase sigma factor RpoD [Escherichia coli O5:K4(L):H4 str.
            ATCC 23502]
 gb|AGC88546.1| RNA polymerase sigma-70 factor [Escherichia coli APEC O78]
 gb|EMR93311.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli ONT:H33
            str. C48/93]
 gb|EMS06450.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli O127:H27
            str. C43/90]
 gb|EMV04744.1| RNA polymerase sigma factor rpoD [Escherichia coli MP021017.10]
 gb|EMV08661.1| RNA polymerase sigma factor rpoD [Escherichia coli MP021017.11]
 gb|EMV16756.1| RNA polymerase sigma factor rpoD [Escherichia coli MP021017.12]
 gb|EMV54416.1| RNA polymerase sigma factor rpoD [Escherichia coli 2871950]
 gb|EMW54771.1| RNA polymerase sigma factor rpoD [Escherichia coli 2762100]
 gb|EMW75408.1| RNA polymerase sigma factor rpoD [Escherichia coli 2731150]
 gb|EMW93945.1| RNA polymerase sigma factor rpoD [Escherichia coli ThroopD]
 gb|EMW94338.1| RNA polymerase sigma factor rpoD [Escherichia coli 174750]
 gb|EMW98354.1| RNA polymerase sigma factor rpoD [Escherichia coli P0304777.1]
 gb|EMX22966.1| RNA polymerase sigma factor rpoD [Escherichia coli MP021566.1]
 gb|EMX29628.1| RNA polymerase sigma factor rpoD [Escherichia coli MP021561.2]
 gb|EMX37313.1| RNA polymerase sigma factor rpoD [Escherichia coli MP021017.1]
 gb|EMX62037.1| RNA polymerase sigma factor rpoD [Escherichia coli Jurua 18/11]
 gb|EMZ65635.1| RNA polymerase sigma factor rpoD [Escherichia coli 2846750]
 gb|EMZ76584.1| RNA polymerase sigma factor rpoD [Escherichia coli 199900.1]
 gb|EMZ91580.1| RNA polymerase sigma factor rpoD [Escherichia coli P0305260.1]
 gb|ENA03107.1| RNA polymerase sigma factor rpoD [Escherichia coli P0299438.2]
 gb|ENA12171.1| RNA polymerase sigma factor rpoD [Escherichia coli P0298942.1]
 gb|ENA14295.1| RNA polymerase sigma factor rpoD [Escherichia coli BCE008_MS-13]
 gb|ENA19747.1| RNA polymerase sigma factor rpoD [Escherichia coli 201600.1]
 gb|ENA28882.1| RNA polymerase sigma factor rpoD [Escherichia coli BCE007_MS-11]
 gb|ENA50415.1| RNA polymerase sigma factor rpoD [Escherichia coli 2726950]
 gb|ENA77394.1| RNA polymerase sigma factor rpoD [Escherichia coli 2741950]
 gb|ENA78750.1| RNA polymerase sigma factor rpoD [Escherichia coli 2730350]
 gb|ENA94143.1| RNA polymerase sigma factor rpoD [Escherichia coli 2862600]
 gb|ENB10086.1| RNA polymerase sigma factor rpoD [Escherichia coli 2875150]
 gb|ENB12642.1| RNA polymerase sigma factor rpoD [Escherichia coli BCE008_MS-01]
 gb|ENB19989.1| RNA polymerase sigma factor rpoD [Escherichia coli BCE011_MS-01]
 gb|ENB25912.1| RNA polymerase sigma factor rpoD [Escherichia coli BCE030_MS-09]
 gb|ENB31964.1| RNA polymerase sigma factor rpoD [Escherichia coli BCE032_MS-12]
 gb|ENB37818.1| RNA polymerase sigma factor rpoD [Escherichia coli P0298942.10]
 gb|ENB60953.1| RNA polymerase sigma factor rpoD [Escherichia coli P0298942.2]
 gb|ENB76253.1| RNA polymerase sigma factor rpoD [Escherichia coli P0298942.9]
 gb|ENB86727.1| RNA polymerase sigma factor rpoD [Escherichia coli P0299438.10]
 gb|END55164.1| RNA polymerase sigma factor rpoD [Escherichia coli BCE006_MS-23]
 gb|END63831.1| RNA polymerase sigma factor rpoD [Escherichia coli P0298942.4]
 gb|ENE44016.1| RNA polymerase sigma factor rpoD [Escherichia coli P0304777.10]
 gb|ENE55083.1| RNA polymerase sigma factor rpoD [Escherichia coli P0304777.11]
 gb|ENE69406.1| RNA polymerase sigma factor rpoD [Escherichia coli P0304777.14]
 gb|ENE75306.1| RNA polymerase sigma factor rpoD [Escherichia coli P0304777.15]
 gb|ENE79428.1| RNA polymerase sigma factor rpoD [Escherichia coli P0304777.2]
 gb|ENE85318.1| RNA polymerase sigma factor rpoD [Escherichia coli P0304777.3]
 gb|ENE97905.1| RNA polymerase sigma factor rpoD [Escherichia coli P0304777.5]
 gb|ENF07017.1| RNA polymerase sigma factor rpoD [Escherichia coli P0304777.8]
 gb|ENF10401.1| RNA polymerase sigma factor rpoD [Escherichia coli P0304777.9]
 gb|ENF95407.1| RNA polymerase sigma factor rpoD [Escherichia coli P0305260.15]
 gb|ENG00859.1| RNA polymerase sigma factor rpoD [Escherichia coli P0305260.3]
 gb|ENG10414.1| RNA polymerase sigma factor rpoD [Escherichia coli P0305260.5]
 gb|ENG81392.1| RNA polymerase sigma factor rpoD [Escherichia coli 178200]
 gb|EOU44102.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE35]
 gb|EOU57443.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE14]
 gb|EOU89378.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE34]
 gb|EOV09850.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE40]
 gb|EOV17354.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE200]
 gb|EOV32937.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE219]
 gb|EOV34925.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE221]
 gb|EOV42754.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE222]
 gb|EOV48420.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE61]
 gb|EOV72926.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE71]
 gb|EOV76068.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE73]
 gb|EOW11382.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE103]
 gb|EOW19474.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE107]
 gb|EOW29741.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE108]
 gb|EOW42789.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE130]
 gb|EOW45137.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE132]
 gb|EOW58163.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE155]
 gb|EOW89242.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE1]
 gb|EOW93148.1| RNA polymerase sigma factor rpoD [Escherichia coli KTE41]
 gb|EQN44135.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 10
            (4-6832164)]
 gb|EQN63103.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 18
            (4-8589585)]
 gb|EQO27496.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 33
            (4-2174936)]
 gb|EQP90441.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 82
            (4-2209276)]
 gb|EQQ19030.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 91
            (4-4638751)]
 gb|EQR31622.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 122
            (4-6851606)]
 gb|EQR35769.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 121
            (4-6877826)]
 gb|EQR80972.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 134
            (4-6073441)]
 gb|EQS53302.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 150
            (4-3258106)]
 gb|EQS85526.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 167
            (4-6073565)]
 gb|EQS92343.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 164
            (4-5953081)]
 gb|EQU21489.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 200
            (4-4449924)]
 gb|EQU72957.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 209
            (4-3062651)]
 gb|EQV05598.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 221
            (4-3136817)]
 gb|EQV51878.1| RNA polymerase sigma factor rpoD [Escherichia coli KOEGE 40 (102a)]
 gb|EQW10647.1| RNA polymerase sigma factor rpoD [Escherichia coli KOEGE 131 (358a)]
 gb|EQW29094.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3052-1]
 gb|EQW90118.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3139-1]
 gb|EQX67059.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3180-1]
 gb|EQX82268.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3199-1]
 gb|EQY15929.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3212-1]
 gb|EQY57470.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3240-1]
 gb|EQY86223.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3314-1]
 gb|EQY89068.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3317-1]
 gb|EQY96526.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3329-1]
 gb|EQY99370.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3318-1]
 gb|EQZ11883.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3355-1]
 gb|EQZ33928.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3592-1]
 gb|EQZ37521.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3609-1]
 gb|EQZ63009.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3682-1]
 gb|ERA16243.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3889-1]
 gb|ERA98936.1| RNA polymerase sigma factor rpoD [Escherichia coli KOEGE 3 (4a)]
 gb|ERB02639.1| RNA polymerase sigma factor rpoD [Escherichia coli KOEGE 7 (16a)]
 gb|ERB17457.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3151-1]
 gb|ERB21566.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3150-1]
 gb|ERB25387.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3271-1]
 gb|ESA86357.1| RNA polymerase sigma factor RpoD [Escherichia coli 907713]
 gb|ESA87450.1| RNA polymerase sigma factor RpoD [Escherichia coli 909945-2]
 gb|ESD49216.1| RNA polymerase sigma factor RpoD [Escherichia coli 908521]
 gb|ESD50247.1| RNA polymerase sigma factor RpoD [Escherichia coli 908522]
 gb|ESK15914.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 50
            (4-2593475)]
 gb|ESL20701.1| RNA polymerase sigma factor rpoD [Escherichia coli BIDMC 39]
 gb|ESL33974.1| RNA polymerase sigma factor rpoD [Escherichia coli BIDMC 37]
 gb|ESP35123.1| RNA polymerase sigma factor rpoD [Escherichia coli HVH 152
            (4-3447545)]
 gb|ESP43374.1| RNA polymerase sigma factor rpoD [Escherichia coli UMEA 3148-1]
 gb|ESS98614.1| RNA polymerase sigma factor RpoD [Escherichia coli CE549]
 gb|EST63120.1| RNA polymerase sigma factor RpoD [Escherichia coli ECC-Z]
 gb|EST70665.1| RNA polymerase sigma factor RpoD [Escherichia coli ECA-727]
 gb|EST88342.1| RNA polymerase sigma factor RpoD [Escherichia coli ECA-0157]
 emb|CDK80698.1| RNA polymerase sigma factor RpoD [Escherichia coli IS25]
 gb|ETS28358.1| RNA polymerase sigma factor RpoD [Escherichia coli O6:H16:CFA/II str.
            B2C]
 gb|AHM29842.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AHM33095.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AHM37698.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|EYB43320.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|EYB50564.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|EYD81675.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-176-05_S1_C1]
 gb|EYD95737.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-110-08_S4_C3]
 gb|EYD97207.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-110-08_S4_C2]
 gb|EYE11078.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-110-08_S3_C3]
 gb|EYE18659.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-110-08_S3_C2]
 gb|EYE20751.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-110-08_S1_C3]
 gb|EYE21337.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-110-08_S3_C1]
 gb|EYE33814.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-110-08_S1_C1]
 gb|EYV95438.1| RNA polymerase sigma factor RpoD [Escherichia coli O6:H16 str.
            99-3165]
 gb|EZA40108.1| RNA polymerase sigma factor RpoD [Escherichia coli O103:H11 str.
            04-3023]
 gb|EZA71711.1| RNA polymerase sigma factor RpoD [Escherichia coli O157:H16 str.
            98-3133]
 gb|EZA77601.1| RNA polymerase sigma factor RpoD [Escherichia coli O25:NM str.
            E2539C1]
 gb|EZA78585.1| RNA polymerase sigma factor RpoD [Escherichia coli O6:H16 str.
            F5656C1]
 gb|EZJ20837.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-176-05_S4_C3]
 gb|EZJ34848.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-250-04_S4_C2]
 gb|EZJ68036.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-176-05_S4_C1]
 gb|EZJ70715.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-182-04_S3_C3]
 gb|EZJ90602.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-182-04_S3_C1]
 gb|EZK12507.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-005-03_S1_C3]
 gb|EZK28680.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-182-04_S1_C1]
 gb|EZK30958.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-005-03_S1_C2]
 gb|KDA67557.1| RNA polymerase sigma factor rpoD [Escherichia coli 1-182-04_S1_C2]
 gb|KDA83372.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-011-08_S3_C3]
 emb|CDP73852.1| RNA polymerase sigma factor [Escherichia coli]
 emb|CDP74691.1| Putative uncharacterized protein [Escherichia coli D6-117.29]
 gb|KDG13333.1| RNA polymerase sigma factor rpoD [Escherichia coli BIDMC 72]
 gb|KDG15987.1| RNA polymerase sigma factor rpoD [Escherichia coli BIDMC 73]
 gb|KDG94980.1| RNA polymerase sigma factor rpoD [Escherichia coli UCI 66]
 gb|KDP17815.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KDT11517.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-052-05_S1_C3]
 gb|KDT56344.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-105-05_S4_C3]
 gb|KDT68475.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-267-03_S3_C1]
 gb|KDT72092.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-373-03_S3_C1]
 gb|KDT82299.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-373-03_S1_C2]
 gb|KDT84467.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-475-03_S4_C1]
 gb|KDT87682.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-475-03_S1_C1]
 gb|KDT93370.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-105-05_S4_C1]
 gb|KDU13181.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-105-05_S3_C3]
 gb|KDU13241.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-373-03_S3_C2]
 gb|KDU35750.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-073-06_S4_C1]
 gb|KDU48074.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-373-03_S1_C1]
 gb|KDU67415.1| RNA polymerase sigma factor rpoD [Escherichia coli 4-203-08_S4_C3]
 gb|KDV81256.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-052-05_S3_C3]
 gb|KDV83192.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-052-05_S4_C3]
 gb|KDW00373.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-156-04_S1_C3]
 gb|KDW06558.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-156-04_S3_C3]
 gb|KDW30369.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-177-06_S1_C2]
 gb|KDW53921.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-210-07_S1_C3]
 gb|KDW79269.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-005-03_S4_C1]
 gb|KDW90101.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-210-07_S4_C1]
 gb|KDW91531.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-210-07_S1_C2]
 gb|KDX17946.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-210-07_S3_C3]
 gb|KDX39426.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-156-04_S4_C3]
 gb|KDX46935.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-177-06_S3_C2]
 gb|KDX59065.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-210-07_S4_C2]
 gb|KDX66027.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-210-07_S4_C3]
 gb|KDX87234.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-222-05_S3_C3]
 gb|KDX94454.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-222-05_S4_C2]
 gb|KDY14790.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-316-03_S4_C2]
 gb|KDY46916.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-427-07_S4_C1]
 gb|KDY52651.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-460-02_S3_C1]
 gb|KDY61814.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-460-02_S3_C3]
 gb|KDY76709.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-474-04_S1_C1]
 gb|KDY78793.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-460-02_S4_C3]
 gb|KDY85989.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-474-04_S3_C1]
 gb|KDY98009.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-474-04_S3_C2]
 gb|KDZ18845.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-474-04_S3_C3]
 gb|KDZ35076.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-020-07_S1_C3]
 gb|KDZ62518.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-073-06_S3_C1]
 gb|KDZ69947.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-073-06_S3_C2]
 gb|KDZ88413.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-105-05_S1_C2]
 gb|KEJ66317.1| RNA polymerase sigma factor rpoD [Escherichia coli 3-020-07_S3_C2]
 gb|KEK95209.1| RNA polymerase sigma factor rpoD [Escherichia coli 4-203-08_S1_C2]
 gb|KEL01333.1| RNA polymerase sigma factor rpoD [Escherichia coli 4-203-08_S1_C3]
 gb|KEL19534.1| RNA polymerase sigma factor rpoD [Escherichia coli 4-203-08_S3_C1]
 gb|KEL56624.1| RNA polymerase sigma factor rpoD [Escherichia coli 5-172-05_S3_C1]
 gb|KEM31229.1| RNA polymerase sigma factor rpoD [Escherichia coli 6-319-05_S4_C2]
 gb|KEM61004.1| RNA polymerase sigma factor rpoD [Escherichia coli 7-233-03_S1_C2]
 gb|KEM70946.1| RNA polymerase sigma factor rpoD [Escherichia coli 7-233-03_S3_C1]
 gb|KEM88170.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-222-05_S4_C1]
 gb|KEM99163.1| RNA polymerase sigma factor rpoD [Escherichia coli 7-233-03_S1_C3]
 gb|KEN11324.1| RNA polymerase sigma factor rpoD [Escherichia coli 7-233-03_S4_C2]
 gb|KEN23042.1| RNA polymerase sigma factor rpoD [Escherichia coli 8-415-05_S1_C1]
 gb|KEN88161.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-222-05_S3_C1]
 gb|KEN95483.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-222-05_S3_C2]
 gb|KEO14849.1| RNA polymerase sigma factor rpoD [Escherichia coli 2-222-05_S4_C3]
 gb|KEO97023.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KEP09228.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|CDU41043.1| RNA polymerase sigma factor [Escherichia coli]
 gb|KFF38328.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KFF53179.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGM62244.1| RNA polymerase sigma factor RpoD [Escherichia coli G3/10]
 gb|KGM66882.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGM72008.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGM75898.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGM85559.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGP12489.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGP14427.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGP20788.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGP38937.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGT05353.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGT13028.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGT21137.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGT22045.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGT28069.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KGT32649.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHD39497.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHD51326.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHD52148.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHD55504.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHG73754.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHG97568.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHH05219.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHH09518.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHH43052.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHH51983.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHH53799.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHH70208.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHH85692.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHH89404.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHH94694.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHI18580.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHI21714.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHI58644.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHI85371.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KHI99265.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AJB53110.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIG40834.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIG44222.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIG59398.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIG73856.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIG74818.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIG78833.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIH00611.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIH13840.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIH34733.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AJE57637.1| RNA polymerase, sigma(70) factor [Escherichia coli]
 gb|AJF57889.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli 1303]
 gb|AJF78197.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AJH11713.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIQ43041.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIQ46538.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIZ60177.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIZ67221.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIZ75718.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIZ85598.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIZ87566.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIZ88427.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KIZ98836.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KJA03490.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KJA07929.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KJD93532.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KJJ67608.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|AKF22273.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KLD52683.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KLG37149.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KLG59708.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KLH34528.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AKM36582.1| RNA polymerase sigma factor [Escherichia coli PCN061]
 gb|KLX34403.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KLX53478.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KLX66843.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KLX82304.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KLX94972.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AKN48952.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AKO58542.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AKP85984.1| RNA polymerase sigma factor RpoD [Escherichia coli ACN001]
 gb|KNF71245.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KNF81239.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KNZ15710.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KOA24189.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KOA30144.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|CTX21900.1| RNA polymerase [Escherichia coli]
 emb|CTW79060.1| RNA polymerase [Escherichia coli]
 emb|CTR17391.1| RNA polymerase [Escherichia coli]
 emb|CTR14527.1| RNA polymerase [Escherichia coli]
 emb|CTU21908.1| RNA polymerase [Escherichia coli]
 emb|CTU34823.1| RNA polymerase [Escherichia coli]
 emb|CTR16294.1| RNA polymerase [Escherichia coli]
 emb|CTU53833.1| RNA polymerase [Escherichia coli]
 emb|CTR14682.1| RNA polymerase [Escherichia coli]
 emb|CTU44286.1| RNA polymerase [Escherichia coli]
 emb|CTU42203.1| RNA polymerase [Escherichia coli]
 emb|CTU39967.1| RNA polymerase [Escherichia coli]
 emb|CTT65369.1| RNA polymerase [Escherichia coli]
 emb|CTT65727.1| RNA polymerase [Escherichia coli]
 emb|CTR48384.1| RNA polymerase [Escherichia coli]
 emb|CTT99117.1| RNA polymerase [Escherichia coli]
 emb|CTR54104.1| RNA polymerase [Escherichia coli]
 emb|CTV29104.1| RNA polymerase [Escherichia coli]
 emb|CTR43210.1| RNA polymerase [Escherichia coli]
 emb|CTU54748.1| RNA polymerase [Escherichia coli]
 emb|CTT40338.1| RNA polymerase [Escherichia coli]
 emb|CTV48929.1| RNA polymerase [Escherichia coli]
 emb|CTW08419.1| RNA polymerase [Escherichia coli]
 emb|CTU32373.1| RNA polymerase [Escherichia coli]
 emb|CTV52861.1| RNA polymerase [Escherichia coli]
 emb|CTS74457.1| RNA polymerase [Escherichia coli]
 emb|CTU04599.1| RNA polymerase [Escherichia coli]
 emb|CTS01197.1| RNA polymerase [Escherichia coli]
 emb|CTV10842.1| RNA polymerase [Escherichia coli]
 emb|CTV38893.1| RNA polymerase [Escherichia coli]
 emb|CTV73677.1| RNA polymerase [Escherichia coli]
 emb|CTR97125.1| RNA polymerase [Escherichia coli]
 emb|CTV92798.1| RNA polymerase [Escherichia coli]
 emb|CTW38641.1| RNA polymerase [Escherichia coli]
 emb|CTW83635.1| RNA polymerase [Escherichia coli]
 emb|CTX84143.1| RNA polymerase [Escherichia coli]
 emb|CTY74180.1| RNA polymerase [Escherichia coli]
 emb|CTZ17177.1| RNA polymerase [Escherichia coli]
 emb|CTY67320.1| RNA polymerase [Escherichia coli]
 emb|CTZ41779.1| RNA polymerase [Escherichia coli]
 emb|CTZ68240.1| RNA polymerase [Escherichia coli]
 emb|CTZ04163.1| RNA polymerase [Escherichia coli]
 emb|CTY79390.1| RNA polymerase [Escherichia coli]
 emb|CTY66878.1| RNA polymerase [Escherichia coli]
 emb|CTZ91339.1| RNA polymerase [Escherichia coli]
 emb|CTY82172.1| RNA polymerase [Escherichia coli]
 emb|CTZ73086.1| RNA polymerase [Escherichia coli]
 emb|CTZ29193.1| RNA polymerase [Escherichia coli]
 emb|CUA38396.1| RNA polymerase [Escherichia coli]
 gb|KOR01463.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|CUJ87098.1| Sigma-70 [Achromobacter sp. ATCC35328]
 emb|CTX41552.1| RNA polymerase [Escherichia coli]
 emb|CTX58472.1| RNA polymerase [Escherichia coli]
 emb|CTX29869.1| RNA polymerase [Escherichia coli]
 gb|KPO05686.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KPO19999.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KPO28168.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KPO81368.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KPQ48964.1| RNA polymerase sigma factor RpoD [Escherichia coli TW10598]
 gb|KQI78227.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KQI99326.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KQJ04791.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KQJ16098.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KQJ31970.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KQL77046.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KRR53165.1| RNA polymerase sigma-70 factor [Escherichia coli VL2732]
 gb|KRR56796.1| RNA polymerase sigma-70 factor [Escherichia coli VL2874]
 gb|KRV71079.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KRW00754.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KRW01559.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|ALQ57909.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUG76124.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUG84001.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUG85123.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUG85375.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUG97557.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUH08109.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUH15601.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUH19698.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUH28576.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUH30294.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|ALY14611.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KUS74429.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUT82349.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUU17750.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KUW77525.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|AMH23720.1| RNA polymerase subunit sigma [Escherichia coli B]
 gb|AMH28037.1| RNA polymerase subunit sigma [Escherichia coli B]
 gb|KXG62665.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KXG99477.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KXH91465.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXH95167.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP21790.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP22337.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP28562.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP33643.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP34651.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP41592.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP47867.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP51585.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP52232.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP59630.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP61419.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP69152.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP69668.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP78030.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXP90224.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ00891.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ02439.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ04770.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ14997.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ21439.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ22910.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ23292.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ31618.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ38229.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ38589.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ47906.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ51774.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ56801.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ62507.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ63800.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ67066.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ72309.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ75882.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ79853.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ84314.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ89764.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ94492.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXQ99598.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR12125.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR12257.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR13063.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR19392.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR24353.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR25933.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR33278.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR39192.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR44148.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR49773.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR51714.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR60331.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR62017.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR63766.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR71185.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR74823.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR81495.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR83525.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR93929.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXR99942.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KXS01568.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|AMR24606.1| RNA polymerase sigma factor RpoD [Shigella sp. PAMC 28760]
 gb|KYN57700.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KYN58214.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KYO69663.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KYT17051.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KYU37440.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KYU58216.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KYU91674.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KYV09630.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KYV46671.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|KYW24795.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|AMU83656.1| RNA polymerase sigma factor RpoD [Escherichia coli str. Sanji]
 gb|KZI21989.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KZI26720.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KZI45463.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KZI58489.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KZI93792.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KZO69163.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KZO71358.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KZO79833.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KZO87885.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|KZP46525.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OAC03493.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|OAC10739.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|OAC19484.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|OAC29766.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|OAC34031.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|OAC43030.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|OAE57062.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OAE73733.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OAF25736.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|OAF92584.1| RNA polymerase sigma factor rpoD [Escherichia coli PCN009]
 gb|OAO67281.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OAV57986.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ANP09081.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|ANP34044.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|ANO28311.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|SCA72931.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OCK71330.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OCO69722.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OCS71991.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OCW52720.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ODA85524.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ODB43445.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ODH31743.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ODJ40740.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AOR21300.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEH99694.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEI04267.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEI12908.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEI18801.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEI27634.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEI35223.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEI50805.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEI51272.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEI65286.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEL40921.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEL46067.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEL52930.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEL67830.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEL80586.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEM39911.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEM46310.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEM59191.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEM66104.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEM90568.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEN05269.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEN14903.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEN45044.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEN49780.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEN71717.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEN72451.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEN87948.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEN88229.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OEO01775.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AOT31215.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OFE22221.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APA24869.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|OIZ70870.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APG35074.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJL98447.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJM33296.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJM40488.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJM46956.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJM67457.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJM70072.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJM74820.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJM78441.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJN04328.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJN60182.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJO22292.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJO23396.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJO41187.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJO54824.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJO57073.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJO66118.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJO82793.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJO91162.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJO95335.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJO98158.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJP03931.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJP28874.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJP51375.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJP55196.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJP59621.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJP61746.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJP64115.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJP74000.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJP77068.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJP78019.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ00241.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ02881.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ04948.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ14560.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ15957.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ23155.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ37112.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ40343.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ45127.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ63168.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ89479.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ94259.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJQ94448.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJR20355.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJR22962.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJR41122.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJR80407.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJR87701.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJR97379.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJS30080.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJS58895.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OJS72212.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APJ83686.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APJ85728.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APK04932.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APK12379.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APK17025.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APK40597.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APK48251.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APK52105.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APK60457.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APK65336.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APK72374.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APL41311.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APL61320.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APL75837.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKS98446.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKT13556.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKT17770.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKT19837.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKT27456.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKT35553.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKT41304.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKT45685.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKT53974.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKT89478.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKT90272.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKU08434.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKU40300.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKU64924.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKU65757.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKU74415.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKU78715.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKU99204.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKV09116.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKV27403.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKV60976.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKV76913.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKV84861.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKV99101.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKW45237.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKW46721.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKW61502.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKW72740.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKX07413.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKX14487.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKX16397.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKX38537.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OKX75593.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APT01132.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OLR86902.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OLS73989.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OMG95380.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OMH00634.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OMH07545.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|APW92215.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OMI42278.1| RNA polymerase sigma factor RpoD [Escherichia coli N37058PS]
 gb|OMI57129.1| RNA polymerase sigma factor RpoD [Escherichia coli N40607]
 emb|SJK89984.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|ONK40978.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ONK51419.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOC67576.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOH59628.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOH65543.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOH88950.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOI15097.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOI58346.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOI66037.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOJ03052.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOJ51267.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOJ61609.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOJ64953.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOJ78735.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOJ80607.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOK11826.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOK27184.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOK34136.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOM87086.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OON79118.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AQU00836.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AQV34467.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AQV77365.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OOV69337.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARA30847.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARA37735.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARD52846.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARD78390.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|ARD82260.1| RNA polymerase subunit sigma [Escherichia coli]
 gb|ORD38197.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORD88090.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORE82717.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARH98691.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|ORR88610.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORR93222.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS03683.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS05129.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS08237.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS16482.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS19758.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS21201.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS30643.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS33399.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS33898.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS60424.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS74215.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS82653.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS89350.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORS99812.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORT00970.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORT05002.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORT18285.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORT32480.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ORT38158.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|SMB23161.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|SMB23160.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARJ94747.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OSK23435.1| RNA polymerase sigma factor RpoD [Escherichia coli TA144]
 gb|OSK60708.1| RNA polymerase sigma factor RpoD [Escherichia coli E560]
 gb|OSK64439.1| RNA polymerase sigma factor RpoD [Escherichia coli B921]
 gb|OSK65411.1| RNA polymerase sigma factor RpoD [Escherichia coli E1114]
 gb|OSK96905.1| RNA polymerase sigma factor RpoD [Escherichia coli E1002]
 gb|OSL04014.1| RNA polymerase sigma factor RpoD [Escherichia coli H386]
 gb|OSL17836.1| RNA polymerase sigma factor RpoD [Escherichia coli B175]
 gb|OSL22560.1| RNA polymerase sigma factor RpoD [Escherichia coli H617]
 gb|OSL53807.1| RNA polymerase sigma factor RpoD [Escherichia coli H454]
 gb|OSL54171.1| RNA polymerase sigma factor RpoD [Escherichia coli H383]
 gb|OSL69735.1| RNA polymerase sigma factor RpoD [Escherichia coli TA008]
 gb|OSL89270.1| RNA polymerase sigma factor RpoD [Escherichia coli E704]
 gb|OSL99949.1| RNA polymerase sigma factor RpoD [Escherichia coli R424]
 gb|OSQ35312.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OTA10375.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OTB62227.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OTC56357.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OTE35475.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OTE81715.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OTE87859.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OTE94010.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OUD18815.1| RNA polymerase sigma factor RpoD [Escherichia coli M4]
 gb|OUF93638.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OUG11555.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OUJ89178.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OUK48798.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OUK50358.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OUK72264.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OUP42831.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARW89418.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARX12725.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARX28959.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OVJ49110.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OVY45896.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWC66860.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWC74164.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWC83061.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWC83911.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWC91367.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWC98053.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD01456.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD05023.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD07448.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD12752.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD13928.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD29223.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD31833.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD44688.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD46538.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD50919.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD55862.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD57577.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD62502.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD71034.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD72281.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWD83976.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWE18091.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWF14495.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARZ87388.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWG62418.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWG66822.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWG92406.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWH04689.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWH14607.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWP95459.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWR16179.1| RNA polymerase sigma factor RpoD [Shigella boydii]
 gb|OWR39888.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWS79458.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWW55430.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OWX90260.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OXJ86585.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OXK32867.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OXK94216.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ASO77530.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OXZ55168.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OXZ74870.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OXZ77653.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OXZ86314.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OXZ91258.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OYA00867.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OYA16799.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OYC65877.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OYC66618.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OYE21752.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYE24982.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYE64884.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYG71804.1| RNA polymerase sigma factor RpoD [Shigella boydii]
 gb|OYG81533.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYG83263.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYG98407.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYG98964.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYI06390.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYI18165.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYI43598.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYI57868.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYI59145.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYI66301.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYI80064.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYI80850.1| RNA polymerase sigma factor RpoD [Shigella boydii]
 gb|OYI86696.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYJ03784.1| RNA polymerase sigma factor RpoD [Shigella boydii]
 gb|OYJ17281.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYJ31828.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYJ52490.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYJ53050.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYJ65712.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYK64607.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYK74428.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OYL62880.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OYN28399.1| RNA polymerase sigma factor RpoD [Shigella boydii]
 gb|OYQ53874.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|OZM88385.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OZM95503.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OZN03130.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OZP06248.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OZP32874.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OZR92228.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OZS02093.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OZS07354.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|OZS12537.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAB68398.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAB76890.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAB85904.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAB91275.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAC02646.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ77940.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ88492.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ92567.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAQ95781.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAS56616.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAS80800.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAS85542.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|CTP96078.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAU28450.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ASZ47541.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PAY76583.1| RNA polymerase sigma factor RpoD [Shigella flexneri]
 gb|PAY83805.1| RNA polymerase sigma factor RpoD [Shigella boydii]
 gb|PBK07876.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBK16919.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ATB96602.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ATC01308.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ATC09212.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBO11322.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|PBO96788.1| RNA polymerase sigma factor RpoD [Shigella sonnei]
 gb|PBO99240.1| RNA polymerase sigma factor RpoD [Shigella boydii]
 gb|PBQ37542.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBQ54255.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBQ57706.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBQ66347.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBQ73627.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBQ91496.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBQ99298.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBR17257.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBR39863.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBS99957.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT04515.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT11303.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT16057.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT21742.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT26149.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT32900.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT41528.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT49166.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT53982.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT56334.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT61997.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT66936.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT71603.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT77274.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT82125.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT87330.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT89980.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBT97340.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBU32549.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PBU57162.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PCD73546.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PCO97662.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PCS50928.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PCS63413.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PCS97547.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PCT18561.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PCT33611.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PDM44240.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PDN94881.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PDO06037.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PDS13477.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PDS21180.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PDV60337.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PGF70213.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PGG06787.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PGG64101.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ATM09920.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PHK61363.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PHK70560.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PHL42440.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PHL58862.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PHL71918.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PHM02131.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PIM56280.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ATW96313.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ATX17661.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ATX47909.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ATX53302.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJF56736.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJF61066.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJF66731.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJF70586.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJF91180.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJF93088.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJF97847.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJG02886.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJG06367.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJN77163.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ATZ39689.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJW36144.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PJW76939.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|SMZ43680.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUA43700.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PKJ15877.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PKQ95440.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PKZ79284.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PLA88794.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PLB59092.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PLB61236.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUJ99593.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUK09966.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUK15224.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUK20349.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUL62074.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUN46164.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PMD76212.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PMD89442.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PME02818.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 emb|SOQ97182.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 emb|SOQ93039.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 emb|SOR03948.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 emb|SOQ89967.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 emb|SOQ63741.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 emb|SOQ66900.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 emb|SOQ77646.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 emb|SOQ80219.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 emb|SOQ73338.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 emb|SOR08465.1| RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli]
 gb|AUO39782.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUO55863.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PND45091.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PNO96905.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUP45275.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PNY43130.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AUV22487.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POH45272.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POH97016.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POI07454.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POS47023.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POT07071.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POT09150.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POT09479.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POT18911.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POT22061.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POT23274.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|POV26672.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AVB44156.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPE09282.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPV47928.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPV58317.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPV65449.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPV97500.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPW03664.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPW07517.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPW20165.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPW20842.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPW47443.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPW73185.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPW81882.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPW86798.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPW98358.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPX11344.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPX29353.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPX32932.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPX46700.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPX54416.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPX61184.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPY70109.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPY86347.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPY87057.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPY98073.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPZ04327.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPZ12829.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPZ15738.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPZ29250.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQK29054.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQK31222.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQK36104.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQK38820.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQK52141.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQK60085.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQK67329.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQN51730.1| RNA polymerase sigma factor RpoD [Shigella dysenteriae]
 gb|PQO68287.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQO70994.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQO73619.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQO82090.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQO86951.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PQP09052.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AVJ77745.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PRB39053.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PRC27420.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AVM05071.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PRP45817.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PRW51906.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PSF41256.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PSF86895.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PSG10382.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PSG20755.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PSG24344.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PSG29936.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PSG34366.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PSG44618.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PSG70295.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PSG75537.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|AVP31252.1| RNA polymerase sigma factor RpoD [Escherichia coli]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_081508771.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ARE46222.1| RNA polymerase sigma factor RpoD [Escherichia coli C]
 emb|SNW10800.1| RNA polymerase [Escherichia coli]
 gb|ATU33632.1| RNA polymerase sigma factor RpoD [Escherichia coli]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>gb|AAA24601.1| RNA polymerase sigma-subunit [Escherichia coli]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQY+RVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_001639895.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ENF83615.1| RNA polymerase sigma factor rpoD [Escherichia coli P0305260.12]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_001463676.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|ENC02498.1| RNA polymerase sigma factor rpoD [Escherichia coli P0299438.4]
 gb|ENG15009.1| RNA polymerase sigma factor rpoD [Escherichia coli P0305260.7]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_001394856.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|EMW29507.1| RNA polymerase sigma factor rpoD [Escherichia coli 2845350]
 gb|ENA75992.1| RNA polymerase sigma factor rpoD [Escherichia coli 2730450]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_001705450.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|EMV53862.1| RNA polymerase sigma factor rpoD [Escherichia coli 2872000]
 gb|EMW33424.1| RNA polymerase sigma factor rpoD [Escherichia coli 2785200]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_001686787.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|EMU76833.1| RNA polymerase sigma factor rpoD [Escherichia coli MP021017.6]
          Length = 613

 Score =  933 bits (2411), Expect = 0.0
 Identities = 483/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_047792213.1| RNA polymerase sigma factor RpoD [Escherichia coli]
 gb|PPI90998.1| RNA polymerase sigma factor RpoD [Escherichia coli]
          Length = 613

 Score =  932 bits (2410), Expect = 0.0
 Identities = 483/506 (95%), Positives = 483/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYK STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKLSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_097728914.1| RNA polymerase sigma factor RpoD [Escherichia coli]
          Length = 613

 Score =  932 bits (2410), Expect = 0.0
 Identities = 482/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMS+GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613


>ref|WP_097508891.1| RNA polymerase sigma factor RpoD [Escherichia coli]
          Length = 613

 Score =  932 bits (2409), Expect = 0.0
 Identities = 482/506 (95%), Positives = 484/506 (95%)
 Frame = +1

Query: 1    VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 180
            VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD
Sbjct: 108  VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167

Query: 181  PNAEEDLAPTATHVGSELSQXXXXXXXXXXXXXXXXXXXXXXNSIDPELAREKFAELRAQ 360
            PNAEEDLAPTATHVGSELSQ                      NSIDPELAREKFAELRAQ
Sbjct: 168  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227

Query: 361  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 540
            YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI
Sbjct: 228  YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 541  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 720
            MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQK+QQI
Sbjct: 288  MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKMQQI 347

Query: 721  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 900
            EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 348  EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407

Query: 901  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 1080
            GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 408  GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467

Query: 1081 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 1260
            RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT
Sbjct: 468  RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527

Query: 1261 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 1440
            LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERI
Sbjct: 528  LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 587

Query: 1441 RQIEAKALRKLRHPSRSEVLRSFLDD 1518
            RQIEAKALRKLRHPSRSEVLRSFLDD
Sbjct: 588  RQIEAKALRKLRHPSRSEVLRSFLDD 613