BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Acanthopanax21_contig00000108
         (3328 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|POH44369.1| DNA-directed RNA polymerase subunit beta' [Escher...  1994   0.0  
ref|WP_097749025.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
ref|WP_097680124.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
ref|WP_097568032.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
ref|WP_097512138.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
ref|WP_097473978.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
ref|WP_097465103.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
ref|WP_097426091.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
gb|PDV61271.1| DNA-directed RNA polymerase subunit beta', partia...  1994   0.0  
ref|WP_097293688.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
ref|WP_096932494.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
gb|OZP06555.1| DNA-directed RNA polymerase subunit beta' [Escher...  1994   0.0  
ref|WP_096170513.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
ref|WP_094319510.1| DNA-directed RNA polymerase subunit beta' [S...  1994   0.0  
ref|WP_089611021.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
pdb|5NSS|D Chain D, Cryo-em Structure Of Rna Polymerase-sigma54 ...  1994   0.0  
gb|AFG42913.1| DNA-directed RNA polymerase subunit beta' [Escher...  1994   0.0  
ref|WP_086660339.1| MULTISPECIES: DNA-directed RNA polymerase su...  1994   0.0  
ref|WP_085693485.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  
ref|WP_077867270.1| DNA-directed RNA polymerase subunit beta' [E...  1994   0.0  

>gb|POH44369.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_097749025.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPATPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_097680124.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPTAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_097568032.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_097512138.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  LVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_097473978.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEALAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_097465103.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_097426091.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>gb|PDV61271.1| DNA-directed RNA polymerase subunit beta', partial [Escherichia coli]
          Length = 1259

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 157  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 216

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 217  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 276

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 277  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 336

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 337  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 396

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 397  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 456

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 457  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 516

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 517  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 576

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 577  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 636

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 637  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 696

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 697  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 756

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 757  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 816

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 817  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 876

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 877  MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 936

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 937  GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 996

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 997  FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1056

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1057 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1116

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1117 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1176

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1177 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1236

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1237 TAEDASASLAELLNAGLGGSDNE 1259


>ref|WP_097293688.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_096932494.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAADEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>gb|OZP06555.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRHRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_096170513.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_094319510.1| DNA-directed RNA polymerase subunit beta' [Shigella sonnei]
 gb|OYJ78452.1| DNA-directed RNA polymerase subunit beta' [Shigella sonnei]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAALLNAGLGGSDNE 1407


>ref|WP_089611021.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>pdb|5NSS|D Chain D, Cryo-em Structure Of Rna Polymerase-sigma54 Holoenzyme With
            Promoter Dna And Transcription Activator Pspf Intermedate
            Complex
          Length = 1449

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 347  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 406

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 407  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 466

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 467  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 526

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 527  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 586

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 587  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 646

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 647  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 706

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 707  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 766

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 767  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 826

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 827  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 886

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 887  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 946

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 947  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 1006

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 1007 SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1066

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1067 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1126

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1127 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1186

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1187 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1246

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1247 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1306

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1307 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1366

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1367 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1426

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1427 TAEDASASLAELLNAGLGGSDNE 1449


>gb|AFG42913.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli P12b]
          Length = 1379

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 277  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 336

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 337  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 396

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 397  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 456

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 457  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 516

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 517  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 576

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 577  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 636

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 637  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 696

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 697  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 756

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 757  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 816

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 817  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 876

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 877  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 936

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 937  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 996

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 997  MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1056

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1057 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1116

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1117 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1176

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1177 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1236

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1237 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1296

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1297 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1356

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1357 TAEDASASLAELLNAGLGGSDNE 1379


>ref|WP_086660339.1| MULTISPECIES: DNA-directed RNA polymerase subunit beta'
            [Enterobacteriaceae]
 gb|OYJ13391.1| DNA-directed RNA polymerase subunit beta' [Shigella boydii]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_085693485.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
 gb|OSQ35271.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
 gb|PNY42734.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1407

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 305  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 365  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 425  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 485  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 545  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 605  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 665  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 725  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 785  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 845  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 905  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 965  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1385 TAEDASASLAELLNAGLGGSDNE 1407


>ref|WP_077867270.1| DNA-directed RNA polymerase subunit beta' [Escherichia coli]
          Length = 1388

 Score = 1994 bits (5166), Expect = 0.0
 Identities = 1030/1103 (93%), Positives = 1030/1103 (93%)
 Frame = +2

Query: 2    ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 181
            ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
Sbjct: 286  ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 345

Query: 182  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 361
            QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN
Sbjct: 346  QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 405

Query: 362  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 541
            RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM
Sbjct: 406  RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 465

Query: 542  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 721
            MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL
Sbjct: 466  MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 525

Query: 722  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 901
            HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM
Sbjct: 526  HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 585

Query: 902  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHXXXXXXXXXXXXX 1081
            LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH             
Sbjct: 586  LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 645

Query: 1082 XXXXXSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 1261
                 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM
Sbjct: 646  QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 705

Query: 1262 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 1441
            MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
Sbjct: 706  MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 765

Query: 1442 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 1621
            DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT
Sbjct: 766  DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 825

Query: 1622 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 1801
            AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA
Sbjct: 826  AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 885

Query: 1802 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGXXXXXXXXXXIQVKNKGSIXXXXXX 1981
            RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG          IQVKNKGSI      
Sbjct: 886  RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 945

Query: 1982 XXXXXXXXXXITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 2161
                      ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT
Sbjct: 946  SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1005

Query: 2162 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 2341
            MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ
Sbjct: 1006 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1065

Query: 2342 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 2521
            GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL
Sbjct: 1066 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1125

Query: 2522 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 2701
            FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
Sbjct: 1126 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1185

Query: 2702 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 2881
            ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA
Sbjct: 1186 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1245

Query: 2882 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 3061
            TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS
Sbjct: 1246 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1305

Query: 3062 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDXXXXXXXXXXXXXPQV 3241
            FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD             PQV
Sbjct: 1306 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1365

Query: 3242 TAEDXXXXXXXXXXXXXXXXDNE 3310
            TAED                DNE
Sbjct: 1366 TAEDASASLAELLNAGLGGSDNE 1388