BLASTX nr result

ID: Acanthopanax21_contig00000074 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Acanthopanax21_contig00000074
         (928 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020221519.1| leucine-rich repeat extensin-like protein 4 ...    61   2e-06

>ref|XP_020221519.1| leucine-rich repeat extensin-like protein 4 [Cajanus cajan]
          Length = 816

 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 51/148 (34%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
 Frame = -2

Query: 906 TTKQPPISEHLPANLRSNPPPSLSHAHTPS-LPHFFQPCPLXXXXXXXXXXXXXXXXXXX 730
           TT  PP S   P+ + + P PS     TPS LP    P P+                   
Sbjct: 417 TTPSPP-SPTTPSPIHTPPSPSTPSPTTPSPLPSPTTPSPI------------------- 456

Query: 729 PITHSLPCPAFSHTNPSRTTQRPSHSPPSPIT---------CAPALPLP*HNSSDPSLPH 577
              H+ P P+     PS TT  P H+PPSP T          +P  P P H    PS P 
Sbjct: 457 ---HTPPSPSTPSPFPSPTTPSPIHTPPSPSTPSPTTPSPLPSPTTPSPIHTPPSPSTPS 513

Query: 576 PSTTTIPLFTPTS-SRITAPLPPRSPSP 496
           P TT  PL +PT+ S I  P  P +PSP
Sbjct: 514 P-TTPSPLPSPTTPSPIHTPPSPSTPSP 540



 Score = 58.5 bits (140), Expect = 9e-06
 Identities = 49/157 (31%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
 Frame = -2

Query: 906 TTKQPPISEHLPANLRSNPPPSLSHAHTPS-LPHFFQPCPLXXXXXXXXXXXXXXXXXXX 730
           +T  P  S   P+ + + P PS     TPS LP    P P+                   
Sbjct: 463 STPSPFPSPTTPSPIHTPPSPSTPSPTTPSPLPSPTTPSPIHTPP--------------- 507

Query: 729 PITHSLPCPAFSHTNPSRTTQRPSHSPPSPIT---------CAPALPLP*HNSSDPSLPH 577
             + S P P      PS TT  P H+PPSP T          +P  P P H    PS P 
Sbjct: 508 --SPSTPSPTTPSPLPSPTTPSPIHTPPSPSTPSPTTPSPLPSPTTPSPIHTPPSPSTPS 565

Query: 576 PS--------TTTIPLFTPTSSRITAPLP-PRSPSPI 493
           P+        TT  P+ TP S    +P P P +PSPI
Sbjct: 566 PTTPSPLPSPTTPSPIHTPPSPSTPSPFPSPTTPSPI 602


Top