BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00035581
         (238 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABV65718.1| RNA polymerase beta'' subunit, partial (chloropla...   160   3e-37
gb|AEI27563.1| RNA polymerase beta subunit [Gouania mauritiana]       156   5e-36
gb|AEI27565.1| RNA polymerase beta subunit [Hovenia trichocarpa ...   147   2e-33
gb|AEI27568.1| RNA polymerase beta subunit [Rhamnus utilis]           144   3e-32
gb|AEI27558.1| RNA polymerase beta subunit [Dirachma socotrana]       137   2e-30
gb|AEI27559.1| RNA polymerase beta subunit [Dryas octopetala]         134   2e-29
gb|AEI27553.1| RNA polymerase beta subunit [Barbeya oleoides]         134   4e-29
gb|AEI27566.1| RNA polymerase beta subunit [Neillia thibetica]        130   3e-28
ref|YP_009136469.1| RNA polymerase beta'' subunit (chloroplast) ...   129   7e-28
ref|YP_005296090.1| rpoC2 gene product (chloroplast) [Pentactina...   129   7e-28
ref|YP_009136385.1| RNA polymerase beta'' subunit (chloroplast) ...   129   1e-27
ref|YP_009136301.1| RNA polymerase beta'' subunit (chloroplast) ...   129   1e-27
ref|YP_009020028.1| RNA polymerase beta' subunit (plastid) [Prun...   129   1e-27
ref|YP_009170417.1| RNA polymerase beta' subunit (chloroplast) [...   127   3e-27
ref|YP_009175995.1| RNA polymerase beta' subunit (chloroplast) [...   126   6e-27
gb|AEI27561.1| RNA polymerase beta subunit [Ficus tikoua]             126   7e-27
ref|YP_009024671.1| RNA polymerase beta' subunit (chloroplast) [...   125   1e-26
ref|YP_004021655.1| RNA polymerase beta' subunit [Prunus persica...   125   1e-26
gb|AEI27556.1| RNA polymerase beta subunit [Maclura tricuspidata]     125   2e-26
gb|AKC99763.1| RNA polymerase beta'' subunit (chloroplast) [Prun...   124   2e-26

>gb|ABV65718.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ceanothus
           prostratus]
          Length = 1281

 Score =  160 bits (406), Expect = 3e-37
 Identities = 76/78 (97%), Positives = 76/78 (97%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHKFFS GLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSD FLLAKRRRN
Sbjct: 492 NNDQVKHKFFSFGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDLFLLAKRRRN 551

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQWIQKREKELMP
Sbjct: 552 RFIIPFQWIQKREKELMP 569


>gb|AEI27563.1| RNA polymerase beta subunit [Gouania mauritiana]
          Length = 1246

 Score =  156 bits (395), Expect = 5e-36
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHKF S GLSGKKES+ISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN
Sbjct: 478 NNDQVKHKFLSFGLSGKKESVISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 537

Query: 183 RFIIPFQWIQKREKELM 233
           RFIIPFQWIQKREK+LM
Sbjct: 538 RFIIPFQWIQKREKDLM 554


>gb|AEI27565.1| RNA polymerase beta subunit [Hovenia trichocarpa var. robusta]
          Length = 1254

 Score =  147 bits (372), Expect = 2e-33
 Identities = 71/78 (91%), Positives = 73/78 (93%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NND+VK K  SLGLSGKKESIISDYSEFNRIIYKG CNFIFPS+LHENSD FLLAKRRRN
Sbjct: 478 NNDKVKSKLKSLGLSGKKESIISDYSEFNRIIYKGRCNFIFPSLLHENSDLFLLAKRRRN 537

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQWIQKREKELMP
Sbjct: 538 RFIIPFQWIQKREKELMP 555


>gb|AEI27568.1| RNA polymerase beta subunit [Rhamnus utilis]
          Length = 1250

 Score =  144 bits (362), Expect = 3e-32
 Identities = 69/78 (88%), Positives = 70/78 (89%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQV HKFFS GLSGKKES ISDYSE NRIIY GHCNFIFPSIL+ENSD  LLAKRRRN
Sbjct: 478 NNDQVNHKFFSFGLSGKKESSISDYSESNRIIYTGHCNFIFPSILYENSDLVLLAKRRRN 537

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQWIQKRE ELMP
Sbjct: 538 RFIIPFQWIQKRETELMP 555


>gb|AEI27558.1| RNA polymerase beta subunit [Dirachma socotrana]
          Length = 1252

 Score =  137 bits (346), Expect = 2e-30
 Identities = 65/78 (83%), Positives = 68/78 (87%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NND VKHKFFSLGLS KKES   DYSEFNRI Y+ HCN IFPSILHENSD FLLAKRRRN
Sbjct: 478 NNDPVKHKFFSLGLSDKKESSTPDYSEFNRITYRDHCNLIFPSILHENSDLFLLAKRRRN 537

Query: 183 RFIIPFQWIQKREKELMP 236
           R IIPFQWIQ+REKEL+P
Sbjct: 538 RLIIPFQWIQEREKELIP 555


>gb|AEI27559.1| RNA polymerase beta subunit [Dryas octopetala]
          Length = 1258

 Score =  134 bits (338), Expect = 2e-29
 Identities = 66/78 (84%), Positives = 69/78 (88%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHKFFSL LS KKES I DYSEFNRIIY GH N IFP+ILH+NSDFFLL KRRRN
Sbjct: 478 NNDQVKHKFFSLNLSVKKESSIPDYSEFNRIIYTGHRNLIFPAILHDNSDFFLLTKRRRN 537

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQ IQ+REKELMP
Sbjct: 538 RFIIPFQSIQEREKELMP 555


>gb|AEI27553.1| RNA polymerase beta subunit [Barbeya oleoides]
          Length = 1265

 Score =  134 bits (336), Expect = 4e-29
 Identities = 62/78 (79%), Positives = 69/78 (88%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQ+K+KF S GLSGKKES + DYSE+NRIIY GHCN IFPSILHENS  FLLAKRRRN
Sbjct: 475 NNDQIKNKFVSFGLSGKKESSLPDYSEYNRIIYTGHCNLIFPSILHENSYLFLLAKRRRN 534

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQW Q++EKEL+P
Sbjct: 535 RFIIPFQWSQEQEKELIP 552


>gb|AEI27566.1| RNA polymerase beta subunit [Neillia thibetica]
          Length = 1258

 Score =  130 bits (328), Expect = 3e-28
 Identities = 65/78 (83%), Positives = 68/78 (87%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHK  SL LSGKKES I DYSEFNRIIY GHCN IFP+ILH+N DFFLL KRRRN
Sbjct: 478 NNDQVKHK--SLNLSGKKESSIPDYSEFNRIIYTGHCNLIFPAILHDNFDFFLLTKRRRN 535

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQ IQ+REKELMP
Sbjct: 536 RFIIPFQSIQEREKELMP 553


>ref|YP_009136469.1| RNA polymerase beta'' subunit (chloroplast) [Prunus padus]
           gi|808178349|gb|AKC99679.1| RNA polymerase beta''
           subunit (chloroplast) [Prunus padus]
          Length = 1368

 Score =  129 bits (325), Expect = 7e-28
 Identities = 64/78 (82%), Positives = 68/78 (87%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHK  SL LSGKKE+ I DYSE NRIIY GHCN IFP+ILH+NSDFFLL KRRRN
Sbjct: 516 NNDQVKHK--SLNLSGKKENSIPDYSELNRIIYTGHCNLIFPAILHDNSDFFLLTKRRRN 573

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQ IQ+REKELMP
Sbjct: 574 RFIIPFQSIQEREKELMP 591


>ref|YP_005296090.1| rpoC2 gene product (chloroplast) [Pentactina rupicola]
           gi|371532613|gb|AEX31723.1| RNA polymerase beta'
           subunit-2 (chloroplast) [Pentactina rupicola]
          Length = 1372

 Score =  129 bits (325), Expect = 7e-28
 Identities = 64/78 (82%), Positives = 69/78 (88%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHK  SL LSGKKES I DYSEFN+IIY GHC+ IFP+ILH+NSDFFLL KRRRN
Sbjct: 519 NNDQVKHK--SLNLSGKKESSIPDYSEFNQIIYTGHCHLIFPAILHDNSDFFLLTKRRRN 576

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQ IQ+REKELMP
Sbjct: 577 RFIIPFQSIQEREKELMP 594


>ref|YP_009136385.1| RNA polymerase beta'' subunit (chloroplast) [Prunus maximowiczii]
           gi|808178264|gb|AKC99595.1| RNA polymerase beta''
           subunit (chloroplast) [Prunus maximowiczii]
          Length = 1368

 Score =  129 bits (323), Expect = 1e-27
 Identities = 64/78 (82%), Positives = 67/78 (85%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHK  SL LSGKKES   DYSE NRIIY GHCN IFP+ILH+NSDFFLL KRRRN
Sbjct: 516 NNDQVKHK--SLNLSGKKESTSPDYSELNRIIYTGHCNLIFPAILHDNSDFFLLTKRRRN 573

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQ IQ+REKELMP
Sbjct: 574 RFIIPFQSIQEREKELMP 591


>ref|YP_009136301.1| RNA polymerase beta'' subunit (chloroplast) [Prunus yedoensis]
           gi|808178179|gb|AKC99511.1| RNA polymerase beta''
           subunit (chloroplast) [Prunus yedoensis]
           gi|808178519|gb|AKC99847.1| RNA polymerase beta''
           subunit (chloroplast) [Prunus subhirtella var.
           subhirtella] gi|808178604|gb|AKC99931.1| RNA polymerase
           beta'' subunit (chloroplast) [Prunus subhirtella var.
           subhirtella]
          Length = 1368

 Score =  129 bits (323), Expect = 1e-27
 Identities = 64/78 (82%), Positives = 67/78 (85%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHK  SL LSGKKES   DYSE NRIIY GHCN IFP+ILH+NSDFFLL KRRRN
Sbjct: 516 NNDQVKHK--SLNLSGKKESTSPDYSELNRIIYTGHCNLIFPAILHDNSDFFLLTKRRRN 573

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQ IQ+REKELMP
Sbjct: 574 RFIIPFQSIQEREKELMP 591


>ref|YP_009020028.1| RNA polymerase beta' subunit (plastid) [Prunus mume]
           gi|589061043|gb|AHK26864.1| RNA polymerase beta' subunit
           (plastid) [Prunus mume]
          Length = 1368

 Score =  129 bits (323), Expect = 1e-27
 Identities = 64/78 (82%), Positives = 67/78 (85%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHK  SL LSGKKES   DYSE NRIIY GHCN IFP+ILH+NSDFFLL KRRRN
Sbjct: 516 NNDQVKHK--SLNLSGKKESTSPDYSELNRIIYTGHCNLIFPAILHDNSDFFLLTKRRRN 573

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQ IQ+REKELMP
Sbjct: 574 RFIIPFQSIQEREKELMP 591


>ref|YP_009170417.1| RNA polymerase beta' subunit (chloroplast) [Humulus lupulus]
           gi|927682675|gb|ALE29414.1| RNA polymerase beta' subunit
           (chloroplast) [Humulus lupulus]
          Length = 1398

 Score =  127 bits (319), Expect = 3e-27
 Identities = 62/77 (80%), Positives = 65/77 (84%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQ K KFFS   SGKKES I DYSEFNRII + HCN IFPSILH+NSD FLLAKRRRN
Sbjct: 523 NNDQGKGKFFSSDFSGKKESSIPDYSEFNRIIDRDHCNLIFPSILHKNSDLFLLAKRRRN 582

Query: 183 RFIIPFQWIQKREKELM 233
           RFIIPFQWIQ+RE ELM
Sbjct: 583 RFIIPFQWIQERENELM 599


>ref|YP_009175995.1| RNA polymerase beta' subunit (chloroplast) [Ficus racemosa]
           gi|937500933|gb|ALI30692.1| RNA polymerase beta' subunit
           (chloroplast) [Ficus racemosa]
          Length = 1388

 Score =  126 bits (317), Expect = 6e-27
 Identities = 61/78 (78%), Positives = 67/78 (85%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQ KHKFF+ GLSGKKES I DYSEFNRII   H N IFPS+L+++SD FLLAKRRRN
Sbjct: 522 NNDQGKHKFFTSGLSGKKESSIPDYSEFNRIIDTNHSNLIFPSLLYKDSDLFLLAKRRRN 581

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQWIQ+REKEL P
Sbjct: 582 RFIIPFQWIQEREKELPP 599


>gb|AEI27561.1| RNA polymerase beta subunit [Ficus tikoua]
          Length = 1254

 Score =  126 bits (316), Expect = 7e-27
 Identities = 61/78 (78%), Positives = 67/78 (85%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQ KHKFF+ GLSGKKES I DYSEFNRII   H N IFPS+L+++SD FLLAKRRRN
Sbjct: 480 NNDQGKHKFFTSGLSGKKESSIPDYSEFNRIIDTDHSNLIFPSLLYKDSDLFLLAKRRRN 539

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQWIQ+REKEL P
Sbjct: 540 RFIIPFQWIQEREKELPP 557


>ref|YP_009024671.1| RNA polymerase beta' subunit (chloroplast) [Prunus kansuensis]
           gi|597569096|gb|AHN13527.1| RNA polymerase beta' subunit
           (chloroplast) [Prunus kansuensis]
          Length = 1368

 Score =  125 bits (315), Expect = 1e-26
 Identities = 63/78 (80%), Positives = 66/78 (84%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHK  SL LSGKKES   DYSE NRIIY G CN IFP+ILH+NSDFFLL KRRRN
Sbjct: 516 NNDQVKHK--SLNLSGKKESTSPDYSELNRIIYTGRCNLIFPAILHDNSDFFLLTKRRRN 573

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQ IQ+REKELMP
Sbjct: 574 RFIIPFQSIQEREKELMP 591


>ref|YP_004021655.1| RNA polymerase beta' subunit [Prunus persica]
           gi|309321424|gb|ADO64965.1| RNA polymerase beta' subunit
           [Prunus persica]
          Length = 1368

 Score =  125 bits (315), Expect = 1e-26
 Identities = 63/78 (80%), Positives = 66/78 (84%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHK  SL LSGKKES   DYSE NRIIY G CN IFP+ILH+NSDFFLL KRRRN
Sbjct: 516 NNDQVKHK--SLNLSGKKESTSPDYSELNRIIYTGRCNLIFPAILHDNSDFFLLTKRRRN 573

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQ IQ+REKELMP
Sbjct: 574 RFIIPFQSIQEREKELMP 591


>gb|AEI27556.1| RNA polymerase beta subunit [Maclura tricuspidata]
          Length = 1255

 Score =  125 bits (313), Expect = 2e-26
 Identities = 61/78 (78%), Positives = 67/78 (85%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQ KHKFF+ GLSGKKE  I  YSEFNRII + H N +FPSILH++SDFFLLAKRRRN
Sbjct: 478 NNDQGKHKFFTSGLSGKKEISIPYYSEFNRIIDRDHSNRLFPSILHKDSDFFLLAKRRRN 537

Query: 183 RFIIPFQWIQKREKELMP 236
           RFIIPFQWIQ+REKEL P
Sbjct: 538 RFIIPFQWIQEREKELPP 555


>gb|AKC99763.1| RNA polymerase beta'' subunit (chloroplast) [Prunus serrulata var.
           spontanea]
          Length = 1368

 Score =  124 bits (312), Expect = 2e-26
 Identities = 62/78 (79%), Positives = 66/78 (84%)
 Frame = +3

Query: 3   NNDQVKHKFFSLGLSGKKESIISDYSEFNRIIYKGHCNFIFPSILHENSDFFLLAKRRRN 182
           NNDQVKHK  SL LSGKKES   DYSE NRIIY GHCN IFP+ILH+NS FFLL KRRRN
Sbjct: 516 NNDQVKHK--SLNLSGKKESTSPDYSELNRIIYTGHCNLIFPAILHDNSYFFLLTKRRRN 573

Query: 183 RFIIPFQWIQKREKELMP 236
           RF+IPFQ IQ+REKELMP
Sbjct: 574 RFLIPFQSIQEREKELMP 591