BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00032819
         (1453 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              266   e-114
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  248   e-107
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             268   e-104
gb|AFB73912.1| polyprotein [Citrus sinensis]                          296   3e-77
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              295   9e-77
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              293   2e-76
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              293   2e-76
gb|AFB73911.1| polyprotein [Citrus sinensis]                          290   2e-75
gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna ...   257   2e-65
gb|ADG59810.1| gag-pol polyprotein [Fraxinus excelsior]               151   4e-63
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   149   3e-61
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   149   5e-61
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   149   5e-61
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     149   1e-60
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         151   2e-60
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           151   2e-60
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   153   9e-60
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     153   9e-60
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                149   1e-59
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        150   1e-59

>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  266 bits (679), Expect(3) = e-114
 Identities = 134/207 (64%), Positives = 160/207 (77%), Gaps = 1/207 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D+ GCK H   GI+ ++KG L+VMKAEKI  NLYM  G+T QE +AS+A+AS  +E+TMM
Sbjct: 367  DDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQ-EETTMM 425

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GLK+L E+ L   LK  +LPFCEHCVISKQHRLKF+    RSK IL+LI
Sbjct: 426  WHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLI 485

Query: 795  YSDVWQSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKIK 619
            +SDVW+SP LSLGGARYFVS I DY RR WVYP+K+K+DVFPVFK FKA+++LE  KKIK
Sbjct: 486  HSDVWESPKLSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIK 545

Query: 618  CLRMDNGGEYIGEEFDSLC**EGINRQ 538
            CLR DNGGEY+  EF + C  EGI RQ
Sbjct: 546  CLRTDNGGEYVDGEFLAFCKQEGIVRQ 572



 Score =  142 bits (359), Expect(3) = e-114
 Identities = 69/98 (70%), Positives = 80/98 (81%)
 Frame = -1

Query: 547 QQAVVAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTPSTAIV 368
           +Q  VA+TPQ NGV E+MNR LLE+TR ML+TA M KSFWAEAVKTACYVI R+PST I 
Sbjct: 571 RQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTID 630

Query: 367 LKTQMEMWTGKPADYSCLHIFESPVFVIYNTQETSKLD 254
           LKT MEMW GKP DYS LH+F  PV+V+YN+QE +KLD
Sbjct: 631 LKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLD 668



 Score = 55.5 bits (132), Expect(3) = e-114
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = -2

Query: 270 KHQSWMFLGHADGVKGYRLWDPTAHKVIISRDVKIA 163
           K +  +FLG+AD VKGYRLWDPTA KV++SRDV  A
Sbjct: 670 KSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFA 705



 Score = 71.2 bits (173), Expect = 2e-09
 Identities = 37/74 (50%), Positives = 44/74 (59%)
 Frame = -1

Query: 1411 FNGNNFPLW*MRMKAALRKDNCLVAIEERPAEIVDDGKWNEMDDXXXXXXXXXXXXXXXX 1232
            FNG  F LW ++++A LRKDNCL AI+ RPA+I D+ KW EMDD                
Sbjct: 10   FNGRKFSLWKLKIRAILRKDNCLDAIDGRPADITDE-KWKEMDDNAVANLHLAMADSVLS 68

Query: 1231 XXXEKKRAKEIWDT 1190
               EKK AKEIWDT
Sbjct: 69   SIAEKKTAKEIWDT 82



 Score = 50.4 bits (119), Expect(2) = 8e-08
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = -3

Query: 89   NLVCSRLNKSLYGLK*ASKCWYKRFDSFI 3
            NLVC RL KSLYGLK A +CWYKRFDSFI
Sbjct: 928  NLVC-RLTKSLYGLKQAPRCWYKRFDSFI 955



 Score = 35.4 bits (80), Expect(2) = 8e-08
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = -2

Query: 177 DVKIACLHEKLEEEIYMLQLGGF*RKRKGEFSL 79
           DVK A LH +LEEEIYMLQ  GF  K +G+ +L
Sbjct: 899 DVKTAFLHGELEEEIYMLQPEGF--KEQGKENL 929


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  248 bits (633), Expect(3) = e-107
 Identities = 125/207 (60%), Positives = 157/207 (75%), Gaps = 1/207 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D+ G K  I  GI+ ++KG+L+VMKA+K+A NLYM  G+T Q  +AS+A   S +E+TMM
Sbjct: 367  DDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADASVA-VGSQEETTMM 425

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GLK+L E+ L   LK  SLPFCEHCVISKQHRLKF+ S ARSK IL+LI
Sbjct: 426  WHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTARSKHILDLI 485

Query: 795  YSDVWQSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKIK 619
            +SDVW+SP +S+GGA+YFVS I DY RR WVYP+K+K+ V+ VFK FKA+++LE  K+IK
Sbjct: 486  HSDVWESPEVSIGGAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKEFKAQVELETGKRIK 545

Query: 618  CLRMDNGGEYIGEEFDSLC**EGINRQ 538
            CLR DNGGEY   +F + C  EGI RQ
Sbjct: 546  CLRTDNGGEYTDGDFLAFCKQEGITRQ 572



 Score =  141 bits (356), Expect(3) = e-107
 Identities = 68/98 (69%), Positives = 80/98 (81%)
 Frame = -1

Query: 547 QQAVVAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTPSTAIV 368
           +Q  VA+TPQ NGV E+MNR LLE+TR ML+TAG+ KSFWAEA KTACYVI R+PSTAI 
Sbjct: 571 RQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIG 630

Query: 367 LKTQMEMWTGKPADYSCLHIFESPVFVIYNTQETSKLD 254
           LKT MEMW GKP DYS L +F  PV+V+YN+QE +KLD
Sbjct: 631 LKTPMEMWKGKPGDYSSLRVFGCPVYVMYNSQERTKLD 668



 Score = 52.0 bits (123), Expect(3) = e-107
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -2

Query: 270 KHQSWMFLGHADGVKGYRLWDPTAHKVIISRDV 172
           K +   FLG+AD VKGYRLWDPTA K+ +SRDV
Sbjct: 670 KSRRCTFLGYADNVKGYRLWDPTARKIFVSRDV 702



 Score = 70.1 bits (170), Expect = 5e-09
 Identities = 38/74 (51%), Positives = 45/74 (60%)
 Frame = -1

Query: 1411 FNGNNFPLW*MRMKAALRKDNCLVAIEERPAEIVDDGKWNEMDDXXXXXXXXXXXXXXXX 1232
            FNG+NF LW +++KA LRKDNCL AI+ RPA+I DD K  EMDD                
Sbjct: 10   FNGSNFSLWKLKIKAILRKDNCLPAIDGRPADITDD-KRKEMDDNAVANLHLAVADSVLS 68

Query: 1231 XXXEKKRAKEIWDT 1190
               EKK AK+IWDT
Sbjct: 69   SIAEKKTAKKIWDT 82



 Score = 50.4 bits (119), Expect(2) = 6e-08
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = -3

Query: 89   NLVCSRLNKSLYGLK*ASKCWYKRFDSFI 3
            NLVC RL KSLYGLK A +CWYKRFDSFI
Sbjct: 928  NLVC-RLTKSLYGLKQAPRCWYKRFDSFI 955



 Score = 35.8 bits (81), Expect(2) = 6e-08
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = -2

Query: 177 DVKIACLHEKLEEEIYMLQLGGF*RKRK 94
           DVK A LH +LEEEIYMLQ  GF  K +
Sbjct: 899 DVKTAFLHGELEEEIYMLQPEGFEEKER 926


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  268 bits (685), Expect(2) = e-104
 Identities = 131/207 (63%), Positives = 157/207 (75%), Gaps = 1/207 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            DNS  +     G+M I +GAL+VMK EKIA NLYM KGET QE EAS+A+ S   +ST++
Sbjct: 358  DNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQEAEASVAACSP--DSTLL 415

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH S+ G+KIL EQKL   L K SLP CEHC+ SKQHRLKFS+SN+R K +LEL+
Sbjct: 416  WHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLKFSTSNSRGKVVLELV 475

Query: 795  YSDVWQSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKIK 619
            +SDVWQ+P+ SLGGA+YFVS I DY RRCWVYP+K+K+DVF  FK FKAR++L+  KKIK
Sbjct: 476  HSDVWQAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFATFKAFKARVELDSGKKIK 535

Query: 618  CLRMDNGGEYIGEEFDSLC**EGINRQ 538
            C R DNGGEY  EEFD  C  EGI RQ
Sbjct: 536  CFRTDNGGEYTSEEFDDFCKKEGIKRQ 562



 Score =  141 bits (356), Expect(2) = e-104
 Identities = 69/98 (70%), Positives = 78/98 (79%)
 Frame = -1

Query: 547 QQAVVAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTPSTAIV 368
           +Q  VAYTPQ NGV E+MNR LLE+TR MLR AG+ KSFWAEAV TACY++ R PSTAI 
Sbjct: 561 RQFTVAYTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIE 620

Query: 367 LKTQMEMWTGKPADYSCLHIFESPVFVIYNTQETSKLD 254
           LKT MEMWTGKP DYS LHIF S V+ +YN QE +KLD
Sbjct: 621 LKTPMEMWTGKPVDYSNLHIFGSIVYAMYNAQEITKLD 658



 Score = 73.2 bits (178), Expect = 6e-10
 Identities = 35/73 (47%), Positives = 42/73 (57%)
 Frame = -1

Query: 1411 FNGNNFPLW*MRMKAALRKDNCLVAIEERPAEIVDDGKWNEMDDXXXXXXXXXXXXXXXX 1232
            FNG NF LW +++KA LRKDNCL AI ERP +  DD KW+EM++                
Sbjct: 10   FNGKNFSLWKLKVKAILRKDNCLAAISERPVDFTDDKKWSEMNEDAMADLYLSIADGVLS 69

Query: 1231 XXXEKKRAKEIWD 1193
               EKK A EIWD
Sbjct: 70   SIEEKKTANEIWD 82



 Score = 52.8 bits (125), Expect(2) = 5e-08
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = -3

Query: 89   NLVCSRLNKSLYGLK*ASKCWYKRFDSFI 3
            NLVC RLNKSLYGLK A +CWYKRFDSFI
Sbjct: 921  NLVC-RLNKSLYGLKQAPRCWYKRFDSFI 948



 Score = 33.9 bits (76), Expect(2) = 5e-08
 Identities = 17/23 (73%), Positives = 17/23 (73%)
 Frame = -2

Query: 177 DVKIACLHEKLEEEIYMLQLGGF 109
           DVK A LH  LEEEIYMLQ  GF
Sbjct: 892 DVKTAFLHGDLEEEIYMLQPEGF 914



 Score = 60.5 bits (145), Expect = 4e-06
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 6/54 (11%)
 Frame = -2

Query: 315 YIYLKVLFLLYTTLK------KHQSWMFLGHADGVKGYRLWDPTAHKVIISRDV 172
           +I+  +++ +Y   +      K +   FLG+ADGVKGYRLWDPTAHKV+ISRDV
Sbjct: 639 HIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLWDPTAHKVVISRDV 692


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  296 bits (758), Expect = 3e-77
 Identities = 173/351 (49%), Positives = 218/351 (62%), Gaps = 23/351 (6%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D+ GCKTH+ +GIM I+KGAL++MKAEKI  NL+M KGET QE +A +AS  + +ESTMM
Sbjct: 368  DSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETLQEADACVAS--NGEESTMM 425

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GLKIL+E+KL   LK  SLPFCEHCV SKQHRLKFS S ARSK IL+LI
Sbjct: 426  WHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLI 485

Query: 795  YSDVWQSPILSLGGARYFVSCID-YFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKIK 619
            +SDVW+SP +S+GGA+Y V+ ID Y RRCWVYP+K+K+DVFPVFK +KA ++LE  KKIK
Sbjct: 486  HSDVWESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIK 545

Query: 618  CLRMDNGGEYIGEEFDSLC**E---------------GINRQLWRTLHSKME*QSR*IES 484
            CLR DNGGEY   EF + C  E               G+  ++ RTL  ++    R    
Sbjct: 546  CLRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLR---- 601

Query: 483  CWNRQE*C*ERQG*PSHFGQKQLRPPAM*SNGHHQPQLF*K---HRWRCGLVSQLIIRAY 313
                        G P+ F  +  +      N      +  K     W         + A+
Sbjct: 602  ----------TAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPADYSYLHAF 651

Query: 312  ---IYLKVLFLLYTTLK-KHQSWMFLGHADGVKGYRLWDPTAHKVIISRDV 172
               +Y+       T L  K +  +FLG+ADGVKGYRLWDPTAHK++ISRDV
Sbjct: 652  GCPVYVMYNAQERTKLDPKSRKCIFLGYADGVKGYRLWDPTAHKIVISRDV 702



 Score = 77.8 bits (190), Expect = 2e-11
 Identities = 41/74 (55%), Positives = 44/74 (59%)
 Frame = -1

Query: 1411 FNGNNFPLW*MRMKAALRKDNCLVAIEERPAEIVDDGKWNEMDDXXXXXXXXXXXXXXXX 1232
            FNGNNF LW M+MKA LRK+NCL AI ERP EI DD KWNE+D                 
Sbjct: 10   FNGNNFSLWKMKMKAVLRKNNCLAAIGERPMEITDD-KWNEVDSNAISDLHLALADGVLS 68

Query: 1231 XXXEKKRAKEIWDT 1190
               EK  AKEIWDT
Sbjct: 69   SVAEKNTAKEIWDT 82



 Score = 52.8 bits (125), Expect(2) = 3e-08
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = -3

Query: 89   NLVCSRLNKSLYGLK*ASKCWYKRFDSFI 3
            NLVC RLNKSLYGLK A +CWYKRFDSFI
Sbjct: 932  NLVC-RLNKSLYGLKQAPRCWYKRFDSFI 959



 Score = 34.7 bits (78), Expect(2) = 3e-08
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = -2

Query: 177 DVKIACLHEKLEEEIYMLQLGGF 109
           DVK A LH +LEEEIYMLQ  GF
Sbjct: 903 DVKTAFLHGELEEEIYMLQPEGF 925


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  295 bits (754), Expect = 9e-77
 Identities = 169/343 (49%), Positives = 219/343 (63%), Gaps = 12/343 (3%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D+ GCK H   GI+ ++KG L+VMKAEKI  NLYM  G+T QE +AS+A ASS +E+TMM
Sbjct: 367  DDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVA-ASSQEETTMM 425

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GLK+L E+ L   LK  +LPFCEHCVISKQHRLKF+    RSK IL+LI
Sbjct: 426  WHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKHILDLI 485

Query: 795  YSDVWQSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKIK 619
            +SDVW+SP +SLGGARYFVS I DY RR WVYP+K+K+DVFPVFK FKA+++LE  KKIK
Sbjct: 486  HSDVWESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIK 545

Query: 618  CLRMDNGGEYIGEEFDSLC**EGINRQLWRTLHSKME--*QSR*IESCWNRQE*C*ERQG 445
            CLR DNGGEYI  EF + C  EGI RQ +   H+  +     R   +   R     +  G
Sbjct: 546  CLRTDNGGEYIDGEFLAFCKQEGIVRQ-FTVAHTPQQNGVAERMNRTLLERTRAMLKTAG 604

Query: 444  *PSHFGQKQLRPPAM*SNGHHQPQLF*K---HRWRCGLVSQLIIRAYIYLKVLFLLYTTL 274
                F  + ++      N      +  K     W+   V    +  +++   ++++Y + 
Sbjct: 605  MAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSL--HVFGCPVYVMYNSQ 662

Query: 273  K------KHQSWMFLGHADGVKGYRLWDPTAHKVIISRDVKIA 163
            +      K +  +FLG+AD VKGYRLWDPTA KV++SRDV  A
Sbjct: 663  ERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFA 705



 Score = 73.6 bits (179), Expect = 4e-10
 Identities = 38/74 (51%), Positives = 45/74 (60%)
 Frame = -1

Query: 1411 FNGNNFPLW*MRMKAALRKDNCLVAIEERPAEIVDDGKWNEMDDXXXXXXXXXXXXXXXX 1232
            FNG NF LW ++++A LRKDNCL AI+ RPA+I D+ KW EMDD                
Sbjct: 10   FNGRNFSLWKLKIRAILRKDNCLDAIDGRPADITDE-KWKEMDDNAVANLHLAMADSVLS 68

Query: 1231 XXXEKKRAKEIWDT 1190
               EKK AKEIWDT
Sbjct: 69   SIAEKKTAKEIWDT 82



 Score = 50.4 bits (119), Expect(2) = 8e-08
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = -3

Query: 89   NLVCSRLNKSLYGLK*ASKCWYKRFDSFI 3
            NLVC RL KSLYGLK A +CWYKRFDSFI
Sbjct: 928  NLVC-RLTKSLYGLKQAPRCWYKRFDSFI 955



 Score = 35.4 bits (80), Expect(2) = 8e-08
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = -2

Query: 177 DVKIACLHEKLEEEIYMLQLGGF*RKRKGEFSL 79
           DVK A LH +LEEEIYMLQ  GF  K +G+ +L
Sbjct: 899 DVKTAFLHGELEEEIYMLQPEGF--KEQGKENL 929


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  293 bits (751), Expect = 2e-76
 Identities = 167/343 (48%), Positives = 219/343 (63%), Gaps = 12/343 (3%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D+ GCK H   GI+ ++KG L+VMKAEKI  NLYM  G+T QE +AS+A+AS  +E+TMM
Sbjct: 367  DDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQ-EETTMM 425

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GLK+L E+ L   LK  +LPFCEHCV+SKQHRLKF+    RSK IL+LI
Sbjct: 426  WHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKFARVTTRSKHILDLI 485

Query: 795  YSDVWQSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKIK 619
            +SDVW+SP +SLGGARYFVS I DY RR WVYP+K+K+DVFPVFK FKA+++LE EKKIK
Sbjct: 486  HSDVWESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIK 545

Query: 618  CLRMDNGGEYIGEEFDSLC**EGINRQLWRTLHSKME--*QSR*IESCWNRQE*C*ERQG 445
            CLR DNGGEY+  EF + C  EGI RQ +   H+  +     R   +   R     +  G
Sbjct: 546  CLRTDNGGEYVDGEFLAFCKQEGIVRQ-FTVAHTPQQNGVAERMNRTLLERTRAMLKTAG 604

Query: 444  *PSHFGQKQLRPPAM*SNGHHQPQLF*K---HRWRCGLVSQLIIRAYIYLKVLFLLYTTL 274
                F  +  +      N      +  K     W+   V    +  +++   ++++Y + 
Sbjct: 605  MAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSL--HVFGCPVYVMYNSQ 662

Query: 273  K------KHQSWMFLGHADGVKGYRLWDPTAHKVIISRDVKIA 163
            +      K +  +FLG+AD VKGYRLWDPTA KV++SRDV  A
Sbjct: 663  EKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFA 705



 Score = 69.7 bits (169), Expect = 6e-09
 Identities = 37/74 (50%), Positives = 44/74 (59%)
 Frame = -1

Query: 1411 FNGNNFPLW*MRMKAALRKDNCLVAIEERPAEIVDDGKWNEMDDXXXXXXXXXXXXXXXX 1232
            FNG NF LW ++++A LRKDNCL AI+ R A+I D+ KW EMDD                
Sbjct: 10   FNGRNFSLWKLKIRAILRKDNCLDAIDGRLADITDE-KWKEMDDNAVANLHLAMADSVLS 68

Query: 1231 XXXEKKRAKEIWDT 1190
               EKK AKEIWDT
Sbjct: 69   SIAEKKTAKEIWDT 82



 Score = 50.4 bits (119), Expect(2) = 8e-08
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = -3

Query: 89   NLVCSRLNKSLYGLK*ASKCWYKRFDSFI 3
            NLVC RL KSLYGLK A +CWYKRFDSFI
Sbjct: 928  NLVC-RLTKSLYGLKQAPRCWYKRFDSFI 955



 Score = 35.4 bits (80), Expect(2) = 8e-08
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = -2

Query: 177 DVKIACLHEKLEEEIYMLQLGGF*RKRKGEFSL 79
           DVK A LH +LEEEIYMLQ  GF  K +G+ +L
Sbjct: 899 DVKTAFLHGELEEEIYMLQPEGF--KEQGKENL 929


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  293 bits (751), Expect = 2e-76
 Identities = 168/343 (48%), Positives = 219/343 (63%), Gaps = 12/343 (3%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D+ GCK H   GI+ ++KG L+VMKAEKI  NLYM  G+T QE +AS+A+AS  +E+TMM
Sbjct: 367  DDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQ-EETTMM 425

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GLK+L E+ L   LK  +LPFCEHCVISKQHRLKF+    RSK IL+LI
Sbjct: 426  WHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLI 485

Query: 795  YSDVWQSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKIK 619
            +SDVW+SP LSLGGARYFVS I DY RR WVYP+K+K+DVFPVFK FKA+++LE  KKIK
Sbjct: 486  HSDVWESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIK 545

Query: 618  CLRMDNGGEYIGEEFDSLC**EGINRQLWRTLHSKME--*QSR*IESCWNRQE*C*ERQG 445
            CLR DNGGEY+  EF + C  EGI RQ +   H+  +     R   +   R     +  G
Sbjct: 546  CLRTDNGGEYVDGEFLAFCKQEGIVRQ-FTVAHTPQQNGVAERMNRTLLERTRAMLKTAG 604

Query: 444  *PSHFGQKQLRPPAM*SNGHHQPQLF*K---HRWRCGLVSQLIIRAYIYLKVLFLLYTTL 274
                F  + ++      N      +  K     W+   V    +  +++   ++++Y + 
Sbjct: 605  MAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSL--HVFGCPVYVMYNSQ 662

Query: 273  K------KHQSWMFLGHADGVKGYRLWDPTAHKVIISRDVKIA 163
            +      K +  +FLG+AD VKGYRLWDPTA KV++SRDV  A
Sbjct: 663  ERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFA 705



 Score = 73.6 bits (179), Expect = 4e-10
 Identities = 38/74 (51%), Positives = 45/74 (60%)
 Frame = -1

Query: 1411 FNGNNFPLW*MRMKAALRKDNCLVAIEERPAEIVDDGKWNEMDDXXXXXXXXXXXXXXXX 1232
            FNG NF LW ++++A LRKDNCL AI+ RPA+I D+ KW EMDD                
Sbjct: 10   FNGRNFSLWKLKIRAILRKDNCLDAIDGRPADITDE-KWKEMDDNAVANLHLAMADSVLS 68

Query: 1231 XXXEKKRAKEIWDT 1190
               EKK AKEIWDT
Sbjct: 69   SIAEKKTAKEIWDT 82



 Score = 50.4 bits (119), Expect(2) = 8e-08
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = -3

Query: 89   NLVCSRLNKSLYGLK*ASKCWYKRFDSFI 3
            NLVC RL KSLYGLK A +CWYKRFDSFI
Sbjct: 928  NLVC-RLTKSLYGLKQAPRCWYKRFDSFI 955



 Score = 35.4 bits (80), Expect(2) = 8e-08
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = -2

Query: 177 DVKIACLHEKLEEEIYMLQLGGF*RKRKGEFSL 79
           DVK A LH +LEEEIYMLQ  GF  K +G+ +L
Sbjct: 899 DVKTAFLHGELEEEIYMLQPEGF--KEQGKENL 929


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  290 bits (743), Expect = 2e-75
 Identities = 171/359 (47%), Positives = 220/359 (61%), Gaps = 31/359 (8%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D+ G KTH+ +GIM I+KGAL++MK EKI  NL+M KGET QE +A +AS  + +ESTMM
Sbjct: 368  DSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETLQEADACVAS--NGEESTMM 425

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GLKIL+E+KL   LK  SLPFCEHCV SKQHRLKFS S ARSK IL+LI
Sbjct: 426  WHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLI 485

Query: 795  YSDVWQSPILSLGGARYFVSCID-YFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKIK 619
            +SDVW+SP +S+GGA+Y V+ ID Y RRCWVYP+K+K+DVFPVFK +KA ++LE  KKIK
Sbjct: 486  HSDVWESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIK 545

Query: 618  CLRMDNGGEYIGEEFDSLC**E---------------GINRQLWRTLHSKME*QSR*IES 484
            CLR DNGGEY   EF + C  E               G+  ++ RTL  ++    R    
Sbjct: 546  CLRTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLR---- 601

Query: 483  CWNRQE*C*ERQG*PSHFGQKQLRPPAM*SNGHHQPQLF*KHRWRCGLVSQLIIRA---- 316
                        G P+ F  +  +      N      +        GL + + +      
Sbjct: 602  ----------TAGLPNSFWAEAAKTACYIVNRSPSTAI--------GLKTAMEMWTGKPA 643

Query: 315  -YIYLKV----LFLLYTTLK------KHQSWMFLGHADGVKGYRLWDPTAHKVIISRDV 172
             Y YL      ++++Y   +      K +  +FLG+ADGVKGYRLWDPTAHK++ISRDV
Sbjct: 644  DYSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLGYADGVKGYRLWDPTAHKIVISRDV 702



 Score = 77.4 bits (189), Expect = 3e-11
 Identities = 41/74 (55%), Positives = 44/74 (59%)
 Frame = -1

Query: 1411 FNGNNFPLW*MRMKAALRKDNCLVAIEERPAEIVDDGKWNEMDDXXXXXXXXXXXXXXXX 1232
            FNGNNF LW M+MKA LRK+NCL AI ERP EI DD KWNE+D                 
Sbjct: 10   FNGNNFSLWKMKMKAVLRKNNCLAAIGERPMEITDD-KWNEVDGNAISDLHLALADGVLS 68

Query: 1231 XXXEKKRAKEIWDT 1190
               EK  AKEIWDT
Sbjct: 69   SVAEKNTAKEIWDT 82



 Score = 48.5 bits (114), Expect(2) = 5e-07
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = -3

Query: 89   NLVCSRLNKSLYGLK*ASKCWYKRFDSFI 3
            NLVC RLNKSLYGLK A + WYKRFDSFI
Sbjct: 932  NLVC-RLNKSLYGLKQAPRYWYKRFDSFI 959



 Score = 34.7 bits (78), Expect(2) = 5e-07
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = -2

Query: 177 DVKIACLHEKLEEEIYMLQLGGF 109
           DVK A LH +LEEEIYMLQ  GF
Sbjct: 903 DVKTAFLHGELEEEIYMLQPEGF 925


>gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna angularis]
          Length = 473

 Score =  257 bits (657), Expect = 2e-65
 Identities = 150/325 (46%), Positives = 203/325 (62%), Gaps = 12/325 (3%)
 Frame = -2

Query: 1074 KIAVNLYMFKGETQQEGEASIASASSTKESTMMWHHNLGHTSE*GLKILTEQKLFSRLKK 895
            +IAVNLYM  G+T QE +AS+A+    +E+TMMWH+ LGH SE GLKIL +  L   LK 
Sbjct: 6    QIAVNLYMLLGDTLQEADASVATTKE-EEATMMWHYRLGHMSERGLKILADHNLLPELKT 64

Query: 894  FSLPFCEHCVISKQHRLKFSSSNARSKAILELIYSDVWQSPILSLGGARYFVSCID-YFR 718
            F+LPFCEHCV SKQHRLKF+   ARSK IL+LI+SDVW+SP +S+GGA+YFVS ID Y R
Sbjct: 65   FNLPFCEHCVTSKQHRLKFAKVTARSKHILDLIHSDVWESPEISMGGAKYFVSFIDDYSR 124

Query: 717  RCWVYPVKRKADVFPVFKIFKARLKLEYEKKIKCLRMDNGGEYIGEEFDSLC**EGINRQ 538
            R WVYP+K+K+DVFPVFK FKA+++LE  K IKCLR DNGGEY   +F + C  EGI ++
Sbjct: 125  RLWVYPIKKKSDVFPVFKEFKAQVELETGKMIKCLRTDNGGEYTDGDFLAFCKQEGI-KR 183

Query: 537  LWRTLHSKME*--QSR*IESCWNRQE*C*ERQG*PSHFGQKQLRPPAM*SNGHHQPQLF* 364
             +   H+  +     R   +   R     +  G    F  + ++      N      +  
Sbjct: 184  QFTVAHTPQQNGVAERMNRTLLERTRAMLKTTGLAKSFWAEAVKTACYLINRSPSTAIGV 243

Query: 363  K---HRWRCGLVSQLIIRAYIYLKVLFLLYTTLK------KHQSWMFLGHADGVKGYRLW 211
            K     W+        +  +++   ++++Y + +      K +  +FLG+AD VKGYRLW
Sbjct: 244  KTPMEMWKGKPADYSSL--HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLW 301

Query: 210  DPTAHKVIISRDVKIACLHEKLEEE 136
            DPTAHK+I+SRDV  A   EKL+ E
Sbjct: 302  DPTAHKIIVSRDVVFA---EKLQSE 323


>gb|ADG59810.1| gag-pol polyprotein [Fraxinus excelsior]
          Length = 188

 Score =  151 bits (381), Expect(3) = 4e-63
 Identities = 74/98 (75%), Positives = 83/98 (84%)
 Frame = -1

Query: 547 QQAVVAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTPSTAIV 368
           +Q  VAYTPQ NGV E+MNR LLE+TR MLRT GMTKSFWAEAVKTACYVI ++PSTAI 
Sbjct: 66  RQLTVAYTPQQNGVAERMNRTLLERTRAMLRTTGMTKSFWAEAVKTACYVINQSPSTAID 125

Query: 367 LKTQMEMWTGKPADYSCLHIFESPVFVIYNTQETSKLD 254
           LKT +EMWTGKP +YS LH F SPV+V+YN QETSKLD
Sbjct: 126 LKTPIEMWTGKPTNYSHLHTFGSPVYVMYNAQETSKLD 163



 Score = 99.4 bits (246), Expect(3) = 4e-63
 Identities = 47/65 (72%), Positives = 50/65 (76%)
 Frame = -2

Query: 729 DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKIKCLRMDNGGEYIGEEFDSLC**EG 550
           DY RRCWVYP+KR AD FPVFKIFK  ++ E EKKIKCLR DN GEY G EFDS C  EG
Sbjct: 4   DYSRRCWVYPIKRMADGFPVFKIFKVWVEFESEKKIKCLRTDNEGEYTGVEFDSFCQQEG 63

Query: 549 INRQL 535
           I RQL
Sbjct: 64  IKRQL 68



 Score = 42.0 bits (97), Expect(3) = 4e-63
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -2

Query: 270 KHQSWMFLGHADGVKGYRLWDPTA 199
           K +  +FLG ADGVKGYRLWDPTA
Sbjct: 165 KSRKCIFLGCADGVKGYRLWDPTA 188


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  149 bits (375), Expect(3) = 3e-61
 Identities = 78/197 (39%), Positives = 120/197 (60%), Gaps = 2/197 (1%)
 Frame = -2

Query: 1125 DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMMWHHNLGHTSE 946
            DGI+ + KG+L+VMKA+  + NLY  +G T     A+++ + S  ++T +WH  LGH SE
Sbjct: 347  DGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSE 406

Query: 945  *GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELIYSDVW-QSPI 769
             GL  L+++ L        L FCEHC+  K  R+KF++S   ++ IL+ ++SD+W  +  
Sbjct: 407  IGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARK 466

Query: 768  LSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKIKCLRMDNGGE 592
             S GGARY ++ + DY R+ W Y +K K   F VFK +K  ++ + E+K+K LR DNG +
Sbjct: 467  TSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMD 526

Query: 591  YIGEEFDSLC**EGINR 541
            +  + F S C  EGI R
Sbjct: 527  FCSKIFKSYCKSEGIVR 543



 Score = 95.1 bits (235), Expect(3) = 3e-61
 Identities = 49/103 (47%), Positives = 68/103 (66%)
 Frame = -1

Query: 562 LIRRYQQAVVAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTP 383
           ++R Y    V +TPQ NGV E+MNR ++ + R ML  AG+ K FWAEAV TACY+I R+P
Sbjct: 541 IVRHY---TVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSP 597

Query: 382 STAIVLKTQMEMWTGKPADYSCLHIFESPVFVIYNTQETSKLD 254
           S AI  KT +++W+G PA+YS L +F     + Y   + SKL+
Sbjct: 598 SYAIDKKTPIKVWSGSPANYSDLRVFGC---IAYAHVDNSKLE 637



 Score = 42.4 bits (98), Expect(3) = 3e-61
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255 MFLGHADGVKGYRLWDPTAHKVIISRDV---KIACLHEK 148
           +FLG+  GVKGY+LW P   KV+ISR+V   +   LH+K
Sbjct: 644 IFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDK 682


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  149 bits (375), Expect(3) = 5e-61
 Identities = 80/207 (38%), Positives = 122/207 (58%), Gaps = 2/207 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D  G K    DGI+ + KG+L+VMKA+  + NLY  +G T     A+++ + S  ++T +
Sbjct: 583  DRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNL 642

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH +E GL  L+++ L        L FCEHC+  K  R+KF++S   ++ IL+ +
Sbjct: 643  WHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYV 702

Query: 795  YSDVW-QSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKI 622
            +SD+W  +   S GG RY ++ + DY R+ W Y +K K   F VFK +K  ++ + E+K+
Sbjct: 703  HSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKV 762

Query: 621  KCLRMDNGGEYIGEEFDSLC**EGINR 541
            K LR DNG E+  + F S C  EGI R
Sbjct: 763  KILRTDNGMEFCSKIFKSYCKSEGIVR 789



 Score = 94.4 bits (233), Expect(3) = 5e-61
 Identities = 45/86 (52%), Positives = 61/86 (70%)
 Frame = -1

Query: 562  LIRRYQQAVVAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTP 383
            ++R Y    V +TPQ NGV E+MNR ++ + R +L  AG+ K FWAEAV TACY+I R+P
Sbjct: 787  IVRHY---TVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSP 843

Query: 382  STAIVLKTQMEMWTGKPADYSCLHIF 305
            S AI  KT +E+W+G PA+YS L +F
Sbjct: 844  SYAIDKKTPIEVWSGSPANYSDLRVF 869



 Score = 42.4 bits (98), Expect(3) = 5e-61
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255  MFLGHADGVKGYRLWDPTAHKVIISRDV---KIACLHEK 148
            +FLG+  GVKGY+LW P   KV+ISR+V   +   LH+K
Sbjct: 890  IFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDK 928


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  149 bits (375), Expect(3) = 5e-61
 Identities = 80/207 (38%), Positives = 122/207 (58%), Gaps = 2/207 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D  G K    DGI+ + KG+L+VMKA+  + NLY  +G T     A+++ + S  ++T +
Sbjct: 376  DRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNL 435

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH +E GL  L+++ L        L FCEHC+  K  R+KF++S   ++ IL+ +
Sbjct: 436  WHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYV 495

Query: 795  YSDVW-QSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKI 622
            +SD+W  +   S GG RY ++ + DY R+ W Y +K K   F VFK +K  ++ + E+K+
Sbjct: 496  HSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKV 555

Query: 621  KCLRMDNGGEYIGEEFDSLC**EGINR 541
            K LR DNG E+  + F S C  EGI R
Sbjct: 556  KILRTDNGMEFCSKIFKSYCKSEGIVR 582



 Score = 94.4 bits (233), Expect(3) = 5e-61
 Identities = 45/86 (52%), Positives = 61/86 (70%)
 Frame = -1

Query: 562 LIRRYQQAVVAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTP 383
           ++R Y    V +TPQ NGV E+MNR ++ + R +L  AG+ K FWAEAV TACY+I R+P
Sbjct: 580 IVRHY---TVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSP 636

Query: 382 STAIVLKTQMEMWTGKPADYSCLHIF 305
           S AI  KT +E+W+G PA+YS L +F
Sbjct: 637 SYAIDKKTPIEVWSGSPANYSDLRVF 662



 Score = 42.4 bits (98), Expect(3) = 5e-61
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255 MFLGHADGVKGYRLWDPTAHKVIISRDV---KIACLHEK 148
           +FLG+  GVKGY+LW P   KV+ISR+V   +   LH+K
Sbjct: 683 IFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDK 721


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  149 bits (375), Expect(3) = 1e-60
 Identities = 82/207 (39%), Positives = 121/207 (58%), Gaps = 2/207 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D  G K    DGI+ + KG+L+VMKA+    NLY  +G T     A+++ + S  ++T +
Sbjct: 285  DRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNL 344

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GL  L+++ L        L FCEHC+  K  R+KF++S   ++ IL+ +
Sbjct: 345  WHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYV 404

Query: 795  YSDVW-QSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKI 622
            +SD+W  +   S GGARY ++ + DY R+ W Y +K K   F VFK +K  ++ + E+K+
Sbjct: 405  HSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKV 464

Query: 621  KCLRMDNGGEYIGEEFDSLC**EGINR 541
            K LR DNG E   + F S C  EGI R
Sbjct: 465  KILRTDNGMELCSKIFKSYCKSEGIVR 491



 Score = 93.2 bits (230), Expect(3) = 1e-60
 Identities = 45/86 (52%), Positives = 60/86 (69%)
 Frame = -1

Query: 562 LIRRYQQAVVAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTP 383
           ++R Y    V +TPQ NGV E+MNR ++ + R ML  A + K FWAEAV TACY+I R+P
Sbjct: 489 IVRHY---TVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSP 545

Query: 382 STAIVLKTQMEMWTGKPADYSCLHIF 305
           S AI  KT +E+W+G PA+YS L +F
Sbjct: 546 SYAIDKKTPIEVWSGSPANYSDLRVF 571



 Score = 42.0 bits (97), Expect(3) = 1e-60
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255 MFLGHADGVKGYRLWDPTAHKVIISRDV---KIACLHEK 148
           +FLG+  GVKGY+LW P   KV+ISR+V   +   LH+K
Sbjct: 592 IFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDK 630


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  151 bits (382), Expect(3) = 2e-60
 Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 2/207 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D  G K    DGI+ + KG+L+VMKA+  + NLY  +G T     A+++ + S  ++T +
Sbjct: 208  DRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNL 267

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GL  L+++ L        L FCEHC+  K  R+KF++S   ++ IL+ +
Sbjct: 268  WHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYV 327

Query: 795  YSDVW-QSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKI 622
            +SD+W  +   S GGARY ++ + DY R+ W Y +K K   F VFK +K  ++ + E+K+
Sbjct: 328  HSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKV 387

Query: 621  KCLRMDNGGEYIGEEFDSLC**EGINR 541
            K LR DNG E+  + F S C  EGI R
Sbjct: 388  KILRTDNGMEFCSKIFKSYCKSEGIVR 414



 Score = 88.6 bits (218), Expect(3) = 2e-60
 Identities = 41/75 (54%), Positives = 54/75 (72%)
 Frame = -1

Query: 529 YTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTPSTAIVLKTQME 350
           YTPQ NGV E+MNR ++ + R ML  AG+ K FWA AV T CY+I R+PS AI  KT ++
Sbjct: 416 YTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIK 475

Query: 349 MWTGKPADYSCLHIF 305
           +W+G PA+YS L +F
Sbjct: 476 VWSGFPANYSDLRVF 490



 Score = 43.1 bits (100), Expect(3) = 2e-60
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255 MFLGHADGVKGYRLWDPTAHKVIISRDV---KIACLHEK 148
           +FLG++ GVKGY+LW P   KV+ISR+V   +   LH+K
Sbjct: 511 IFLGYSSGVKGYKLWCPETKKVVISRNVVFHESVMLHDK 549


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  151 bits (382), Expect(3) = 2e-60
 Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 2/207 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D  G K    DGI+ + KG+L+VMKA+  + NLY  +G T     A+++ + S  ++T +
Sbjct: 208  DRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNL 267

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GL  L+++ L        L FCEHC+  K  R+KF++S   ++ IL+ +
Sbjct: 268  WHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYV 327

Query: 795  YSDVW-QSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKI 622
            +SD+W  +   S GGARY ++ + DY R+ W Y +K K   F VFK +K  ++ + E+K+
Sbjct: 328  HSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKV 387

Query: 621  KCLRMDNGGEYIGEEFDSLC**EGINR 541
            K LR DNG E+  + F S C  EGI R
Sbjct: 388  KILRTDNGMEFCSKIFKSYCKSEGIVR 414



 Score = 88.6 bits (218), Expect(3) = 2e-60
 Identities = 41/75 (54%), Positives = 54/75 (72%)
 Frame = -1

Query: 529 YTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTPSTAIVLKTQME 350
           YTPQ NGV E+MNR ++ + R ML  AG+ K FWA AV T CY+I R+PS AI  KT ++
Sbjct: 416 YTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIK 475

Query: 349 MWTGKPADYSCLHIF 305
           +W+G PA+YS L +F
Sbjct: 476 VWSGFPANYSDLRVF 490



 Score = 43.1 bits (100), Expect(3) = 2e-60
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255 MFLGHADGVKGYRLWDPTAHKVIISRDV---KIACLHEK 148
           +FLG++ GVKGY+LW P   KV+ISR+V   +   LH+K
Sbjct: 511 IFLGYSSGVKGYKLWCPETKKVVISRNVVFHESVMLHDK 549


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  153 bits (386), Expect(3) = 9e-60
 Identities = 82/205 (40%), Positives = 122/205 (59%), Gaps = 2/205 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D  G K    DGI+ + KG+L+VMKA+  + NLY  +G T     A+++ + S  ++T +
Sbjct: 411  DRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNL 470

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GL  L++++L        L FCEHC+  K  R+KF++S   ++ IL+ +
Sbjct: 471  WHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYV 530

Query: 795  YSDVWQSPI-LSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKI 622
            +SD+W      S GGARY ++ + DY R+ W Y +K K   F VFK +K  ++ + EKK+
Sbjct: 531  HSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKV 590

Query: 621  KCLRMDNGGEYIGEEFDSLC**EGI 547
            K LR DNG E+  + F S C  EGI
Sbjct: 591  KILRTDNGMEFCSKIFKSYCKSEGI 615



 Score = 85.9 bits (211), Expect(3) = 9e-60
 Identities = 40/77 (51%), Positives = 53/77 (68%)
 Frame = -1

Query: 535 VAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTPSTAIVLKTQ 356
           V +TPQ NGV E+MN  ++ + R ML  A + K FWAEAV T CY+I R+PS A   KT 
Sbjct: 621 VPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTP 680

Query: 355 MEMWTGKPADYSCLHIF 305
           +E+W+G PA+YS L +F
Sbjct: 681 IEVWSGSPANYSDLRVF 697



 Score = 42.4 bits (98), Expect(3) = 9e-60
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255 MFLGHADGVKGYRLWDPTAHKVIISRDV---KIACLHEK 148
           +FLG+  GVKGY+LW P   KV+ISR+V   +   LH+K
Sbjct: 718 IFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDK 756


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  153 bits (386), Expect(3) = 9e-60
 Identities = 82/205 (40%), Positives = 122/205 (59%), Gaps = 2/205 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D  G K    DGI+ + KG+L+VMKA+  + NLY  +G T     A+++ + S  ++T +
Sbjct: 411  DRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNL 470

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GL  L++++L        L FCEHC+  K  R+KF++S   ++ IL+ +
Sbjct: 471  WHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYV 530

Query: 795  YSDVWQSPI-LSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKI 622
            +SD+W      S GGARY ++ + DY R+ W Y +K K   F VFK +K  ++ + EKK+
Sbjct: 531  HSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKV 590

Query: 621  KCLRMDNGGEYIGEEFDSLC**EGI 547
            K LR DNG E+  + F S C  EGI
Sbjct: 591  KILRTDNGMEFCSKIFKSYCKSEGI 615



 Score = 85.9 bits (211), Expect(3) = 9e-60
 Identities = 40/77 (51%), Positives = 53/77 (68%)
 Frame = -1

Query: 535 VAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTPSTAIVLKTQ 356
           V +TPQ NGV E+MN  ++ + R ML  A + K FWAEAV T CY+I R+PS A   KT 
Sbjct: 621 VPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTP 680

Query: 355 MEMWTGKPADYSCLHIF 305
           +E+W+G PA+YS L +F
Sbjct: 681 IEVWSGSPANYSDLRVF 697



 Score = 42.4 bits (98), Expect(3) = 9e-60
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255 MFLGHADGVKGYRLWDPTAHKVIISRDV---KIACLHEK 148
           +FLG+  GVKGY+LW P   KV+ISR+V   +   LH+K
Sbjct: 718 IFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDK 756


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  149 bits (375), Expect(3) = 1e-59
 Identities = 82/207 (39%), Positives = 122/207 (58%), Gaps = 2/207 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D  G K    DGI+ + KG+L+VMKA+  + NLY  +G T     A+++ + S  ++T +
Sbjct: 361  DCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNL 420

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GL  L+ + L        L FCEHC+  K  R+KF++S   ++ IL+ +
Sbjct: 421  WHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYV 480

Query: 795  YSDVW-QSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKI 622
            +SD+W  +   S GGARY ++ + DY R+ W Y +K K   F VFK +K  ++ + E+K+
Sbjct: 481  HSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKV 540

Query: 621  KCLRMDNGGEYIGEEFDSLC**EGINR 541
            K LR DNG E+  + F S C  EGI R
Sbjct: 541  KILRTDNGMEFCSKIFKSYCKSEGIMR 567



 Score = 91.3 bits (225), Expect(3) = 1e-59
 Identities = 44/86 (51%), Positives = 60/86 (69%)
 Frame = -1

Query: 562 LIRRYQQAVVAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTP 383
           ++R Y    V +TPQ NGV E+MNR ++ + R ML  AG+ K FWAEAV TACY+I R+P
Sbjct: 565 IMRHY---TVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSP 621

Query: 382 STAIVLKTQMEMWTGKPADYSCLHIF 305
             AI  KT +++W+G PA+YS L +F
Sbjct: 622 GYAIDKKTPIKVWSGSPANYSDLKVF 647



 Score = 40.8 bits (94), Expect(3) = 1e-59
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255 MFLGHADGVKGYRLWDPTAHKVIISRDV---KIACLHEK 148
           +FLG+  GVKGY+LW P   KV+ISR V   +   LH+K
Sbjct: 668 IFLGYPSGVKGYKLWCPETKKVVISRYVVFHESVMLHDK 706


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  150 bits (379), Expect(3) = 1e-59
 Identities = 82/207 (39%), Positives = 122/207 (58%), Gaps = 2/207 (0%)
 Frame = -2

Query: 1155 DNSGCKTHI*DGIMNIIKGALMVMKAEKIAVNLYMFKGETQQEGEASIASASSTKESTMM 976
            D  G K    DGI+ + KG+L+VMKA   + NLY  +G T     A+++ + S  ++T +
Sbjct: 376  DRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNL 435

Query: 975  WHHNLGHTSE*GLKILTEQKLFSRLKKFSLPFCEHCVISKQHRLKFSSSNARSKAILELI 796
            WH  LGH SE GL  L+++ L        L FCEHC+  K  R+KF++S   ++ IL+ +
Sbjct: 436  WHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYV 495

Query: 795  YSDVW-QSPILSLGGARYFVSCI-DYFRRCWVYPVKRKADVFPVFKIFKARLKLEYEKKI 622
            +SD+W  +   S GGARY ++ + DY R+ W Y +K K   F VFK +K  ++ + E+K+
Sbjct: 496  HSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKV 555

Query: 621  KCLRMDNGGEYIGEEFDSLC**EGINR 541
            K LR DNG E+  + F S C  EGI R
Sbjct: 556  KILRTDNGMEFCSKIFKSYCKSEGIVR 582



 Score = 90.9 bits (224), Expect(3) = 1e-59
 Identities = 46/86 (53%), Positives = 61/86 (70%)
 Frame = -1

Query: 562 LIRRYQQAVVAYTPQ*NGVTEQMNRILLEQTRVMLRTAGMTKSFWAEAVKTACYVI*RTP 383
           ++R Y    V +TPQ NGV E+MNRI++ + R ML  AG+ K FWAEAV TACY+I R+P
Sbjct: 580 IVRHY---TVPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSP 636

Query: 382 STAIVLKTQMEMWTGKPADYSCLHIF 305
           S A   KT +E+W+G PA+YS L +F
Sbjct: 637 SYA-NKKTPIEVWSGSPANYSDLKVF 661



 Score = 39.7 bits (91), Expect(3) = 1e-59
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255 MFLGHADGVKGYRLWDPTAHKVIISRDV---KIACLHEK 148
           +FLG+   VKGY+LW P   KV+ISR+V   +   LH+K
Sbjct: 682 IFLGYPSSVKGYKLWCPETKKVVISRNVVFHESIMLHDK 720