BLASTX nr result
ID: Ziziphus21_contig00023017
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ziziphus21_contig00023017
(1102 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008965524.1| RNA polymerase alpha subunit [Pyrus spinosa]... 580 e-163
ref|YP_004072494.1| RNA polymerase alpha subunit [Corynocarpus l... 578 e-162
ref|YP_004842270.1| RNA polymerase alpha subunit [Pyrus pyrifoli... 577 e-162
gb|AHF72024.1| DNA-directed RNA polymerase alpha chain (chloropl... 573 e-160
ref|YP_005296132.1| rpoA gene product (chloroplast) [Pentactina ... 567 e-159
ref|YP_004021697.1| RNA polymerase alpha subunit [Prunus persica... 567 e-159
gb|AJE71822.1| RNA polymerase alpha subunit (plastid) [Amorpha c... 566 e-159
gb|AGN71997.1| RNA polymerase alpha subunit [Dasiphora fruticosa... 566 e-158
ref|YP_004286134.1| RNA polymerase alpha subunit [Fragaria vesca... 565 e-158
ref|YP_009136511.1| RNA polymerase alpha subunit (chloroplast) [... 565 e-158
ref|YP_009040239.1| RNA polymerase alpha subunit [Fragaria iinum... 565 e-158
gb|AJE71964.1| RNA polymerase alpha subunit (plastid) [Baptisia ... 562 e-157
gb|AFS89573.1| RNA polymerase alpha subunit (chloroplast) [Fraga... 562 e-157
ref|YP_009179088.1| RNA polymerase alpha subunit (chloroplast) [... 559 e-156
ref|YP_008575145.1| RNA polymerase alpha subunit (chloroplast) [... 559 e-156
ref|YP_009123104.1| RNA polymerase alpha subunit (chloroplast) [... 558 e-156
ref|YP_009109843.1| RNA polymerase alpha subunit (chloroplast) [... 558 e-156
ref|YP_008145375.1| RNA polymerase alpha subunit (chloroplast) [... 558 e-156
gb|AJE72035.1| RNA polymerase alpha subunit (plastid) [Chamaecri... 557 e-156
ref|YP_008577865.1| RNA polymerase alpha subunit (chloroplast) [... 557 e-156
>ref|YP_008965524.1| RNA polymerase alpha subunit [Pyrus spinosa]
gi|565666496|emb|CDI73596.1| RNA polymerase alpha subunit
[Pyrus spinosa]
Length = 331
Score = 580 bits (1495), Expect = e-163
Identities = 289/330 (87%), Positives = 302/330 (91%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKVTVST+TLQWKCVESR DSKRLYYGRFILAPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYSTIVGIQESVHEILMNLKEIVL+SNLYGTR+ASICVKGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLKSNLYGTRNASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLHAEEEN HLE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTLP FT+HDRLAK RKN+ EI LK IFIDQ EL PRVYNCLKRSNIHT
Sbjct: 241 NNQHKVTLPLFTYHDRLAKQRKNKKEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHF 1064
MKMKHFRIED+KHIL+ILEI+KHF
Sbjct: 301 NSQEDLMKMKHFRIEDVKHILNILEIKKHF 330
>ref|YP_004072494.1| RNA polymerase alpha subunit [Corynocarpus laevigata]
gi|309252922|gb|ADO60342.1| RNA polymerase alpha subunit
(chloroplast) [Corynocarpus laevigata]
Length = 331
Score = 578 bits (1490), Expect = e-162
Identities = 286/331 (86%), Positives = 301/331 (90%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EK+ VST+TL+WKCVESR DSKRLYYGRFIL+PLMKGQADTIGIAMR+ LLGEIEGT
Sbjct: 1 MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID FIPFLHAEEENFHL+
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDFFIPFLHAEEENFHLK 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTLP FTFHDRLAK RKN+ EI LK IFIDQ EL PR+YNCLKRSNIHT
Sbjct: 241 NNQHKVTLPLFTFHDRLAKLRKNKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHFA 1067
MK+KHFRIED+KHILDILEIEKHFA
Sbjct: 301 NSPDDLMKIKHFRIEDVKHILDILEIEKHFA 331
>ref|YP_004842270.1| RNA polymerase alpha subunit [Pyrus pyrifolia]
gi|345433592|dbj|BAK69414.1| RNA polymerase alpha subunit
[Pyrus pyrifolia]
Length = 331
Score = 577 bits (1487), Expect = e-162
Identities = 288/330 (87%), Positives = 301/330 (91%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKVTVST+TLQWKCVESR DSKRLYYGRFILAPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CIT AK +KIPHEYSTIVGIQESVHEILMNLKEIVL+SNLYGTR+ASICVKGP YVTAQD
Sbjct: 61 CITCAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLKSNLYGTRNASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLHAEEEN HLE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTLP FT+HDRLAK RKN+ EI LK IFIDQ EL PRVYNCLKRSNIHT
Sbjct: 241 NNQHKVTLPLFTYHDRLAKQRKNKKEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHF 1064
MKMKHFRIED+KHIL+ILEI+KHF
Sbjct: 301 NSQEDLMKMKHFRIEDVKHILNILEIKKHF 330
>gb|AHF72024.1| DNA-directed RNA polymerase alpha chain (chloroplast) [Rosa odorata
var. gigantea]
Length = 331
Score = 573 bits (1476), Expect = e-160
Identities = 283/330 (85%), Positives = 299/330 (90%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKVTVST+TLQWKCVESR DSKRLYYGRFILAPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRA+ +KIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGP YVTAQD
Sbjct: 61 CITRARSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IANLTEPI+LCI+LQ+ER+RGYRIKTPNNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIQLQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFH E
Sbjct: 181 NANHSIHSYVNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHFE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTLP FTFHD+ A PRK++ EI LK IFIDQ EL PRVYNCLKRSNIHT
Sbjct: 241 NNQHKVTLPLFTFHDKFANPRKSKTEITLKYIFIDQSELPPRVYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHF 1064
+KMKH RIED+KHIL+ILE +KHF
Sbjct: 301 NSQEDLIKMKHLRIEDVKHILNILEKKKHF 330
>ref|YP_005296132.1| rpoA gene product (chloroplast) [Pentactina rupicola]
gi|371532654|gb|AEX31764.1| RNA polymerase alpha subunit
(chloroplast) [Pentactina rupicola]
Length = 326
Score = 567 bits (1462), Expect = e-159
Identities = 285/325 (87%), Positives = 295/325 (90%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKVTVST+TLQWKCVESR DSKRLYYGRFILAPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT +ASICVKGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTL FT H RLAK RKN+ EI LK IFIDQLEL PRVYNCLKRSNIHT
Sbjct: 241 NNQHKVTLSLFTLHGRLAKQRKNKKEIALKYIFIDQLELLPRVYNCLKRSNIHTLVDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILE 1049
MK+KHFRIED+KHIL+ILE
Sbjct: 301 NSQEDLMKIKHFRIEDVKHILNILE 325
>ref|YP_004021697.1| RNA polymerase alpha subunit [Prunus persica]
gi|595789798|ref|YP_009020071.1| RNA polymerase alpha
subunit (plastid) [Prunus mume]
gi|628249196|ref|YP_009024713.1| RNA polymerase alpha
subunit (chloroplast) [Prunus kansuensis]
gi|817527359|ref|YP_009136343.1| RNA polymerase alpha
subunit (chloroplast) [Prunus yedoensis]
gi|817527598|ref|YP_009136427.1| RNA polymerase alpha
subunit (chloroplast) [Prunus maximowiczii]
gi|309321466|gb|ADO65007.1| RNA polymerase alpha subunit
[Prunus persica] gi|589061084|gb|AHK26905.1| RNA
polymerase alpha subunit (plastid) [Prunus mume]
gi|597569138|gb|AHN13569.1| RNA polymerase alpha subunit
(chloroplast) [Prunus kansuensis]
gi|808178217|gb|AKC99549.1| RNA polymerase alpha subunit
(chloroplast) [Prunus yedoensis]
gi|808178303|gb|AKC99634.1| RNA polymerase alpha subunit
(chloroplast) [Prunus maximowiczii]
gi|808178473|gb|AKC99802.1| RNA polymerase alpha subunit
(chloroplast) [Prunus serrulata var. spontanea]
gi|808178560|gb|AKC99888.1| RNA polymerase alpha subunit
(chloroplast) [Prunus subhirtella var. subhirtella]
gi|808178643|gb|AKC99970.1| RNA polymerase alpha subunit
(chloroplast) [Prunus subhirtella var. subhirtella]
Length = 326
Score = 567 bits (1461), Expect = e-159
Identities = 282/326 (86%), Positives = 296/326 (90%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKVTVST+TLQWKCVESR DSKRLYYGRFILAPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYSTI+GIQESVHEILMNLKEIVLRSNLYGTR+ASIC+KGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIIGIQESVHEILMNLKEIVLRSNLYGTRNASICIKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLIDLFIPFLHAEEEN LE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTLP FTFH RLAK RKN+ EI L+ IFIDQ EL PRVYNCLKRSNIHT
Sbjct: 241 NNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEI 1052
MK+KHFRIED+KHIL+ILEI
Sbjct: 301 NSQEDLMKIKHFRIEDVKHILNILEI 326
>gb|AJE71822.1| RNA polymerase alpha subunit (plastid) [Amorpha canescens]
gi|748992249|gb|AJE72674.1| RNA polymerase alpha subunit
(plastid) [Amorpha fruticosa]
Length = 331
Score = 567 bits (1460), Expect = e-159
Identities = 282/331 (85%), Positives = 298/331 (90%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKV VST+TLQWKCVESRVDSKRLYYGRFIL+PLMKGQADTIGIAMRRVLLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +K+PHEYSTI+GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIIGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEI+DNTQ IANLTEPI+LCI LQ+ER RGYRIK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIIDNTQHIANLTEPINLCIGLQIERSRGYRIKRLNNFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEEN +LE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTLP FTFHD L K RKN+ EI LKSIFIDQLEL PR+YNCLKR NIHT
Sbjct: 241 NNQHKVTLPLFTFHDILTKLRKNKKEIALKSIFIDQLELPPRIYNCLKRFNIHTLLELLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHFA 1067
MK++H R+ED+KHILDILEIEKHFA
Sbjct: 301 NSQEDLMKIEHLRVEDVKHILDILEIEKHFA 331
>gb|AGN71997.1| RNA polymerase alpha subunit [Dasiphora fruticosa subsp. floribunda]
Length = 331
Score = 566 bits (1458), Expect = e-158
Identities = 281/330 (85%), Positives = 296/330 (89%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKVTVST+TLQWKCVESR DSKRLYYGRFILAPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYST VGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTFVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPS+EIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQ+GSYPIDAVFMPVR
Sbjct: 121 IILPPSIEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQEGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFH E
Sbjct: 181 NANHSIHSYVNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHFE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTLP FTFH +LA PRK + EI LK IFIDQ EL P VYNCLKRSNIHT
Sbjct: 241 NNQHKVTLPLFTFHGKLANPRKIKKEITLKYIFIDQSELPPXVYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHF 1064
MK+KH RIED+KHIL+ILEI+K F
Sbjct: 301 NSQEDLMKIKHLRIEDVKHILNILEIKKXF 330
>ref|YP_004286134.1| RNA polymerase alpha subunit [Fragaria vesca subsp. vesca]
gi|408830277|ref|YP_006883295.1| RNA polymerase alpha
subunit (chloroplast) [Fragaria vesca subsp. bracteata]
gi|408830351|ref|YP_006883368.1| RNA polymerase alpha
subunit [Fragaria mandshurica]
gi|428697232|ref|YP_007025415.1| RNA polymerase alpha
subunit (chloroplast) [Fragaria chiloensis]
gi|428697318|ref|YP_007025500.1| RNA polymerase alpha
subunit (chloroplast) [Fragaria virginiana]
gi|324022809|gb|ADY15383.1| RNA polymerase alpha subunit
[Fragaria vesca subsp. vesca] gi|357198771|gb|AET62687.1|
RNA polymerase alpha subunit (chloroplast) [Fragaria
chiloensis] gi|357198857|gb|AET62772.1| RNA polymerase
alpha subunit (chloroplast) [Fragaria virginiana]
gi|378554739|gb|AFC17674.1| RNA polymerase alpha subunit
(chloroplast) [Fragaria vesca subsp. bracteata]
gi|378554813|gb|AFC17747.1| RNA polymerase alpha subunit
[Fragaria mandshurica] gi|511265632|gb|AGN71742.1| RNA
polymerase alpha subunit [Fragaria vesca subsp.
bracteata] gi|511265718|gb|AGN71827.1| RNA polymerase
alpha subunit [Fragaria vesca subsp. bracteata]
gi|511265804|gb|AGN71912.1| RNA polymerase alpha subunit
[Fragaria vesca subsp. bracteata]
gi|511266062|gb|AGN72167.1| RNA polymerase alpha subunit
[Fragaria mandshurica] gi|823333544|gb|AKI30855.1| RNA
polymerase alpha subunit (chloroplast) [Fragaria
chiloensis] gi|823333822|gb|AKI30932.1| RNA polymerase
alpha subunit (chloroplast) [Fragaria mandshurica]
gi|823334158|gb|AKI31010.1| RNA polymerase alpha subunit
(chloroplast) [Fragaria vesca subsp. bracteata]
gi|823334761|gb|AKI31169.1| RNA polymerase alpha subunit
(chloroplast) [Fragaria vesca subsp. bracteata]
gi|823335200|gb|AKI31245.1| RNA polymerase alpha subunit
(chloroplast) [Fragaria virginiana]
Length = 331
Score = 565 bits (1457), Expect = e-158
Identities = 280/330 (84%), Positives = 296/330 (89%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKVTVST+TLQWKCVESR DSKRLYYGRFILAPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYST VGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTFVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPS+EIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQ+GSYPIDAVFMPVR
Sbjct: 121 IILPPSIEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQEGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEN H E
Sbjct: 181 NANHSIHSYVNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHFE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTLP FTFH +LA P+K + E LK IFIDQ EL PRVYNCLKRSNIHT
Sbjct: 241 NNQHKVTLPLFTFHGKLANPKKIKKENTLKYIFIDQSELPPRVYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHF 1064
MK+KH RIED+KHIL+ILEI+KHF
Sbjct: 301 NSQEDLMKIKHLRIEDVKHILNILEIKKHF 330
>ref|YP_009136511.1| RNA polymerase alpha subunit (chloroplast) [Prunus padus]
gi|808178388|gb|AKC99718.1| RNA polymerase alpha subunit
(chloroplast) [Prunus padus]
Length = 326
Score = 565 bits (1456), Expect = e-158
Identities = 281/326 (86%), Positives = 296/326 (90%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKVTVST+TLQWKCVESR DSKRLYYGRFILAPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYSTI+GIQESVHEILMNLKEIVLRSNLYGTR+ASIC+KGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIIGIQESVHEILMNLKEIVLRSNLYGTRNASICIKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLIDLFIPFLHAEEEN LE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHK+TLP FTFH RLAK RKN+ EI L+ IFIDQ EL PRVYNCLKRSNIHT
Sbjct: 241 NNQHKITLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELLPRVYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEI 1052
MK+KHFRIED+KHIL+ILEI
Sbjct: 301 NSQEDLMKIKHFRIEDVKHILNILEI 326
>ref|YP_009040239.1| RNA polymerase alpha subunit [Fragaria iinumae]
gi|511265976|gb|AGN72082.1| RNA polymerase alpha subunit
[Fragaria iinumae] gi|823334375|gb|AKI31088.1| RNA
polymerase alpha subunit (chloroplast) [Fragaria iinumae]
Length = 331
Score = 565 bits (1455), Expect = e-158
Identities = 279/330 (84%), Positives = 296/330 (89%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKVTVST+TLQWKCVESR DSKRLYYGRFI+APLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFIMAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYST VGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTFVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPS+EIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQ+GSYPIDAVFMPVR
Sbjct: 121 IILPPSIEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQEGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEN H E
Sbjct: 181 NANHSIHSYVNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHFE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTLP FTFH +LA P+K + E LK IFIDQ EL PRVYNCLKRSNIHT
Sbjct: 241 NNQHKVTLPLFTFHGKLANPKKIKKENTLKYIFIDQSELPPRVYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHF 1064
MK+KH RIED+KHIL+ILEI+KHF
Sbjct: 301 NSQEDLMKIKHLRIEDVKHILNILEIKKHF 330
>gb|AJE71964.1| RNA polymerase alpha subunit (plastid) [Baptisia bracteata]
gi|748991961|gb|AJE72390.1| RNA polymerase alpha subunit
(plastid) [Baptisia alba]
Length = 331
Score = 562 bits (1448), Expect = e-157
Identities = 281/331 (84%), Positives = 295/331 (89%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKV VST+TLQWKCVESRVDSKRLYYGRFIL+PLMKGQADTIGIAMRRVLLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGP YVTAQ+
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQN 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IANLTEPI+LCI LQ+ER RGYRIKT NNFQD SYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIGLQIERSRGYRIKTLNNFQDRSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEEN +LE
Sbjct: 181 NTNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHK TLPPF FHD K RKN+ EI LKSIFIDQ EL PR+YNCLKRSNIHT
Sbjct: 241 NNQHKATLPPFPFHDIFEKLRKNKKEIALKSIFIDQFELPPRIYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHFA 1067
MK++HF +ED+KHILDILEIEKHFA
Sbjct: 301 NSQEDLMKIEHFYVEDVKHILDILEIEKHFA 331
>gb|AFS89573.1| RNA polymerase alpha subunit (chloroplast) [Fragaria chiloensis]
Length = 331
Score = 562 bits (1448), Expect = e-157
Identities = 279/330 (84%), Positives = 295/330 (89%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKVTVST+TLQWKCVESR DSKRLYYGRFILAPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYST VGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTFVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPS+EIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQ+GSYPIDAVFMPVR
Sbjct: 121 IILPPSIEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQEGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEN H E
Sbjct: 181 NANHSIHSYVNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHFE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKVTLP FTFH +LA P+K + E LK IFIDQ EL PRVYNCLKRSNIHT
Sbjct: 241 NNQHKVTLPLFTFHGKLANPKKIKKENTLKYIFIDQSELPPRVYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHF 1064
MK+KH RIED+KHIL+ILEI+K F
Sbjct: 301 NSQEDLMKIKHLRIEDVKHILNILEIKKDF 330
>ref|YP_009179088.1| RNA polymerase alpha subunit (chloroplast) [Ostrya rehderiana]
gi|940813702|gb|ALK26602.1| RNA polymerase alpha subunit
(chloroplast) [Ostrya rehderiana]
Length = 331
Score = 559 bits (1440), Expect = e-156
Identities = 280/329 (85%), Positives = 292/329 (88%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKV VST+TLQWKC+ESR DSKRLYYGRFIL+PL+KGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVIVSTRTLQWKCIESRADSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYG R ASICVKGPR VTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGIRGASICVKGPRSVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IA LTEPI+L IELQ+ER+RGYRIKTPNN QDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIAKLTEPINLYIELQIERNRGYRIKTPNNSQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLHAEE+ HLE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIELFIPFLHAEEDKLHLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHKV LP FTFHDRL K +KNQ EI LKSIFIDQ EL PR+YNCLKRSNIHT
Sbjct: 241 NNQHKVPLPLFTFHDRLTKLKKNQKEIALKSIFIDQSELPPRIYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKH 1061
MKMKHFRIEDIKHILDILEIE H
Sbjct: 301 KSQDDFMKMKHFRIEDIKHILDILEIENH 329
>ref|YP_008575145.1| RNA polymerase alpha subunit (chloroplast) [Eucalyptus obliqua]
gi|545716363|ref|YP_008575230.1| RNA polymerase alpha
subunit (chloroplast) [Eucalyptus radiata]
gi|545716449|ref|YP_008575315.1| RNA polymerase alpha
subunit (chloroplast) [Eucalyptus delegatensis]
gi|545716535|ref|YP_008575400.1| RNA polymerase alpha
subunit (chloroplast) [Eucalyptus verrucata]
gi|545716621|ref|YP_008575485.1| RNA polymerase alpha
subunit (chloroplast) [Eucalyptus baxteri]
gi|545716707|ref|YP_008575570.1| RNA polymerase alpha
subunit (chloroplast) [Eucalyptus diversifolia]
gi|545717051|ref|YP_008575910.1| RNA polymerase alpha
subunit (chloroplast) [Eucalyptus umbra]
gi|545717137|ref|YP_008575995.1| RNA polymerase alpha
subunit (chloroplast) [Eucalyptus cloeziana]
gi|442566185|gb|AGC56384.1| RNA polymerase alpha subunit
(chloroplast) [Eucalyptus obliqua]
gi|442566271|gb|AGC56469.1| RNA polymerase alpha subunit
(chloroplast) [Eucalyptus radiata]
gi|442566357|gb|AGC56554.1| RNA polymerase alpha subunit
(chloroplast) [Eucalyptus delegatensis]
gi|442566443|gb|AGC56639.1| RNA polymerase alpha subunit
(chloroplast) [Eucalyptus verrucata]
gi|442566529|gb|AGC56724.1| RNA polymerase alpha subunit
(chloroplast) [Eucalyptus baxteri]
gi|442566615|gb|AGC56809.1| RNA polymerase alpha subunit
(chloroplast) [Eucalyptus diversifolia]
gi|442566959|gb|AGC57149.1| RNA polymerase alpha subunit
(chloroplast) [Eucalyptus umbra]
gi|442567045|gb|AGC57234.1| RNA polymerase alpha subunit
(chloroplast) [Eucalyptus cloeziana]
Length = 337
Score = 559 bits (1440), Expect = e-156
Identities = 282/330 (85%), Positives = 293/330 (88%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKV VST+TLQWKCVESR DSKRLYYGRFIL+PLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAKF+KIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGP VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILP SVEIVDNTQ IANLTEPIHLCI LQ+ER+RGY IKTP NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPTSVEIVDNTQYIANLTEPIHLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEN HLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQ+KVTLP FTFHDRLAK RK + EI LKSIFIDQLEL PR YNCLKR NIHT
Sbjct: 241 NNQYKVTLPFFTFHDRLAKLRKTKKEIALKSIFIDQLELPPRTYNCLKRYNIHTLFDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHF 1064
MKM++FRIED+K ILD LEIEK F
Sbjct: 301 KSQEDLMKMEYFRIEDVKQILDSLEIEKAF 330
>ref|YP_009123104.1| RNA polymerase alpha subunit (chloroplast) [Cannabis sativa]
gi|836692052|ref|YP_009143585.1| RNA polymerase alpha
subunit (chloroplast) [Cannabis sativa]
gi|756142243|gb|AJK91453.1| RNA polymerase alpha subunit
(chloroplast) [Cannabis sativa]
gi|828348841|gb|AKK32295.1| RNA polymerase alpha subunit
(chloroplast) [Cannabis sativa]
gi|873820271|gb|AKP55268.1| RNA polymerase alpha subunit
(chloroplast) [Cannabis sativa subsp. sativa]
gi|915477596|gb|AKX33579.1| RNA polymerase alpha subunit
(chloroplast) [Cannabis sativa]
Length = 331
Score = 558 bits (1439), Expect = e-156
Identities = 279/331 (84%), Positives = 293/331 (88%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
M EKV VST+ LQWKCVESR DSKRLYYGRFILAPLM+GQADTIGI MRR LLGEIEGT
Sbjct: 1 MGQEKVIVSTRPLQWKCVESRADSKRLYYGRFILAPLMRGQADTIGIVMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK DKIPHEYS +VGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGP YVTAQD
Sbjct: 61 CITRAKSDKIPHEYSNLVGIQESVHEILMNLKEIVLRSNLYGTREASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILP SVEIVDNTQ IANLTEPI+LCIELQ+ER+RGYRIKTPNNFQ+GSYPIDA+FMPVR
Sbjct: 121 IILPSSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQNGSYPIDAIFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL IPFLHAEEENFHLE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHAEEENFHLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQHK TLP F FH R+AKPRK + EI LK IFIDQ EL PRVYNCLKRSNIHT
Sbjct: 241 NNQHKGTLPLFDFHGRVAKPRKTKKEIALKYIFIDQSELPPRVYNCLKRSNIHTLLDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHFA 1067
+K+K FRIEDIKHILDILEI+KHFA
Sbjct: 301 NSQEDLLKIKDFRIEDIKHILDILEIKKHFA 331
>ref|YP_009109843.1| RNA polymerase alpha subunit (chloroplast) [Trifolium glanduliferum]
gi|672425043|gb|AIJ27883.1| RNA polymerase alpha subunit
(chloroplast) [Trifolium glanduliferum]
Length = 333
Score = 558 bits (1437), Expect = e-156
Identities = 277/333 (83%), Positives = 299/333 (89%), Gaps = 2/333 (0%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
M+ EK+ VST+TLQWKCVESRVDSKRLYYGRFIL+PLMKGQADTIGIAMRR+LLGEIEGT
Sbjct: 1 MIREKIKVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRILLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAKF+KIPHEYSTIVGIQES+HEILMNLKEIVLRSN+YGTRDASIC KGP YVTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNMYGTRDASICFKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IANLTEPI+LCIELQ+ER RGYRIKT NN QDGSY IDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEEN + E
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFE 240
Query: 795 KNQHKVTLPPFTFHDRLAKP--RKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXX 968
NQHKVTLP FTFHDRL K RK + EI LKSIFIDQLEL PR+YNCLK+SNIHT
Sbjct: 241 NNQHKVTLPLFTFHDRLVKDKLRKTKKEIGLKSIFIDQLELPPRIYNCLKKSNIHTLLEL 300
Query: 969 XXXXXXXXMKMKHFRIEDIKHILDILEIEKHFA 1067
MK++HFR+ED+K+IL+IL+IEKHFA
Sbjct: 301 LNKSEEDLMKIEHFRVEDVKNILNILQIEKHFA 333
>ref|YP_008145375.1| RNA polymerase alpha subunit (chloroplast) [Glycine tomentella]
gi|514253012|gb|AGO44272.1| RNA polymerase alpha subunit
(chloroplast) [Glycine tomentella]
Length = 333
Score = 558 bits (1437), Expect = e-156
Identities = 275/333 (82%), Positives = 299/333 (89%), Gaps = 2/333 (0%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EK+ VST+TLQWKCVESR+DSKRLYYGRFIL+PLMKGQADTIGIAMRRVLLGEIEGT
Sbjct: 1 MVREKIRVSTRTLQWKCVESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITR K +KIPHEYSTI+GI+ESVHEILMNLKEIVLRSNLYGTRDASIC KGP YVTAQD
Sbjct: 61 CITRVKSEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IAN+TEP++LCIEL++ER+RGYRIKT NFQDGSYPIDA+FMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDAIFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ F+LE
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDKFNLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKP--RKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXX 968
NQHKVTLP FTFHD LAK RKN+ EI LKSIFIDQLEL PR+YNCLKRSNIHT
Sbjct: 241 NNQHKVTLPLFTFHDILAKEKLRKNKKEIALKSIFIDQLELPPRIYNCLKRSNIHTLLEL 300
Query: 969 XXXXXXXXMKMKHFRIEDIKHILDILEIEKHFA 1067
MK++HFR+ED+K+ILD LEIEKHFA
Sbjct: 301 LNNSQEDLMKLEHFRVEDVKYILDFLEIEKHFA 333
>gb|AJE72035.1| RNA polymerase alpha subunit (plastid) [Chamaecrista fasciculata]
Length = 331
Score = 557 bits (1436), Expect = e-156
Identities = 280/331 (84%), Positives = 296/331 (89%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKV VST+TLQWKCVESR DSKRLYYGRFIL+PLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAK +KIPHEYSTIVGIQESVHEILMNLK+IVLRSNLYGTRDASICVKGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKKIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILPPSVEIVDNTQ IANLTEPI CI LQ+ER+RGYRIKT N FQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPIDFCIGLQIERNRGYRIKTLNTFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY +GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLHA+EENF+LE
Sbjct: 181 NANHSIHSYVDGNEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHADEENFNLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQ KVTLP FTFHD LAK KN+ EI LKSIFIDQLEL PR+YNCLKRSNIHT
Sbjct: 241 NNQDKVTLPLFTFHDGLAKLSKNKKEIALKSIFIDQLELPPRIYNCLKRSNIHTLLELLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHFA 1067
MKM+HFRIED+K ILDILE+EKHFA
Sbjct: 301 NSQEDLMKMEHFRIEDVKRILDILEMEKHFA 331
>ref|YP_008577865.1| RNA polymerase alpha subunit (chloroplast) [Corymbia tessellaris]
gi|953244340|ref|YP_009179540.1| RNA polymerase alpha
subunit (chloroplast) [Corymbia henryi]
gi|953244426|ref|YP_009179625.1| RNA polymerase alpha
subunit (chloroplast) [Corymbia torelliana]
gi|442569109|gb|AGC59274.1| RNA polymerase alpha subunit
(chloroplast) [Corymbia tessellaris]
gi|782493167|gb|AJZ71626.1| RNA polymerase alpha subunit
(chloroplast) [Corymbia citriodora subsp. variegata]
gi|808177167|gb|AKC98536.1| RNA polymerase alpha subunit
(chloroplast) [Corymbia citriodora subsp. citriodora]
gi|808177254|gb|AKC98622.1| RNA polymerase alpha subunit
(chloroplast) [Corymbia citriodora subsp. variegata]
gi|808177425|gb|AKC98791.1| RNA polymerase alpha subunit
(chloroplast) [Corymbia henryi]
gi|808177511|gb|AKC98876.1| RNA polymerase alpha subunit
(chloroplast) [Corymbia torelliana]
gi|808177596|gb|AKC98960.1| RNA polymerase alpha subunit
(chloroplast) [Corymbia torelliana]
gi|808177681|gb|AKC99044.1| RNA polymerase alpha subunit
(chloroplast) [Corymbia torelliana]
gi|808177766|gb|AKC99128.1| RNA polymerase alpha subunit
(chloroplast) [Corymbia torelliana]
Length = 337
Score = 557 bits (1436), Expect = e-156
Identities = 281/330 (85%), Positives = 292/330 (88%)
Frame = +3
Query: 75 MVHEKVTVSTQTLQWKCVESRVDSKRLYYGRFILAPLMKGQADTIGIAMRRVLLGEIEGT 254
MV EKV VST+TLQWKCVESR DSKRLYYGRFIL+PLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 255 CITRAKFDKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 434
CITRAKF+KIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGP VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQD 120
Query: 435 IILPPSVEIVDNTQPIANLTEPIHLCIELQLERHRGYRIKTPNNFQDGSYPIDAVFMPVR 614
IILP SVEIVDNTQ IANLTEPIHLCI LQ+ER+RGY IKTP NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPTSVEIVDNTQYIANLTEPIHLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVR 180
Query: 615 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 794
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEN HLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 795 KNQHKVTLPPFTFHDRLAKPRKNQNEIVLKSIFIDQLELHPRVYNCLKRSNIHTXXXXXX 974
NQ+KVTLP FTFHDRLAK RK + EI LKSIFIDQ EL PR YNCLKR NIHT
Sbjct: 241 NNQYKVTLPFFTFHDRLAKLRKTKKEIALKSIFIDQFELPPRTYNCLKRYNIHTLFDLLN 300
Query: 975 XXXXXXMKMKHFRIEDIKHILDILEIEKHF 1064
MKM++FRIED+K ILD LEIEK F
Sbjct: 301 KSQEDLMKMEYFRIEDVKQILDSLEIEKAF 330