BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00015632
         (6280 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ALM62223.1| RNA-dependent RNA polymerase [Soybean-associated ...   189   2e-44
ref|YP_001655010.1| replicase protein [Phaius virus X] gi|166157...   130   2e-26
ref|NP_659010.1| hypothetical protein GvEgp1 [Garlic virus E] gi...   113   3e-21
gb|AGC67029.1| replicase [Shallot virus X]                            110   1e-20
gb|AFV61767.1| replicase [Garlic virus X]                             109   3e-20
gb|AKN20462.1| replicase [Strawberry mild yellow edge virus]          108   9e-20
gb|AHB33487.1| replicase [Garlic virus A]                             107   2e-19
gb|AGC09135.1| Replicase, partial [Garlic virus A]                    107   2e-19
gb|ALI93569.1| replicase [Strawberry mild yellow edge virus]          106   3e-19
gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Z...   105   4e-19
emb|CAC83699.1| RNA-dependent RNA-polymerase [Garlic virus X]         105   6e-19
gb|AKN20467.1| replicase [Strawberry mild yellow edge virus] gi|...   105   7e-19
ref|NP_620648.1| replicase [Shallot virus X] gi|548840|sp|Q04575...   104   9e-19
gb|AHL25284.1| RNA-dependent RNA polymerase, partial [Rhizoctoni...   103   2e-18
gb|ALI93575.1| replicase [Strawberry mild yellow edge virus]          103   2e-18
ref|NP_044571.1| replicase [Garlic virus X] gi|1888529|gb|AAC588...   103   2e-18
ref|NP_783203.1| RNA-dependent RNA polymerase [Oyster mushroom s...   102   4e-18
emb|CAE12227.1| putative replicase [Strawberry mild yellow edge ...   102   5e-18
gb|AGG13258.1| Replicase [Garlic virus X]                             102   6e-18
ref|NP_620642.1| replicase [Strawberry mild yellow edge virus] g...   102   6e-18

>gb|ALM62223.1| RNA-dependent RNA polymerase [Soybean-associated mycoflexivirus 1]
          Length = 2084

 Score =  189 bits (481), Expect = 2e-44
 Identities = 232/881 (26%), Positives = 349/881 (39%), Gaps = 107/881 (12%)
 Frame = -3

Query: 2582 LPAVTLAEEVIQYTA---DIDRAARLVADLKAHPHVLGSRG-NPV----VLQALDSILDL 2427
            LPAV + +EVI Y     D   A  L +D KA P  L     NPV     L  +    D 
Sbjct: 1148 LPAVPVQQEVIVYVPNARDAGYARALASDFKAKPAALDLTDFNPVDAARTLDQMAKQYDN 1207

Query: 2426 HKLSGAKITVP---VRAYLGVAGSGKTTATV---AYLHTLEPAVRQQVRIASHTESLR-- 2271
               +G  +  P      + GV G GKT   +   A  +  +P     +   +   +LR  
Sbjct: 1208 FVRNGTGLAYPNVTFHIFHGVGGGGKTHRMIQDLAIANAAKPFTPADIMFHTADHNLRSK 1267

Query: 2270 --AQTKLQLDFPELKGFNFPTIPSLITEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEV 2097
              A+    L    L+  +F T    +  P+ G +V D+ G  +   L L +  NP V+++
Sbjct: 1268 FMAEVIAALPNVGLQNNHFTTSCVPLVRPAAGTVVFDDVGLTFNSFLPLFMACNPGVTDI 1327

Query: 2096 VVNGDPAQGMARFPVSNTQSEYDLSPLAALAPQVTRYATVSHRMFRILADVLG-----VH 1932
             +  D AQG    P +N  S    +    L+P  +RY T   R+ +  AD+ G     + 
Sbjct: 1328 WLTFDCAQGQGVIPTANAISRSHPATKDWLSPMSSRYGTEMIRLSQDTADLYGFPRVVIP 1387

Query: 1931 TTNSVVGHVTHTIAAKIGLPVCTASPRYMGVLAGAGRRAYTYEGVQGEDFREDMEVDATG 1752
               +  G VT    +   +P+   SPR+    +  G+ A T++  QG     D+ VD  G
Sbjct: 1388 GRIAPRGKVTVVSQSPHNVPLLAVSPRFTQTQSMGGQVANTFQECQGHTIHGDVCVDLGG 1447

Query: 1751 LESAILDRTAYVALTRSRTGVFLHMEPL-NPLANAKTQPTGSDLLNAILFGMRERNQSFA 1575
            L +   D +A+ ALTR     FL + PL N  A  +T    S +L A+L     R   + 
Sbjct: 1448 LTATCTDTSAWTALTRPTGHTFLKLGPLMNTQAVVETSWAKSQILTALLTVATIRQTPYV 1507

Query: 1574 DPSY---WLSRAAFARHLESCMP-----MLPWFAP---IGATIPTADFQL---------- 1458
                    L R A   HL  C+       L   AP   IGAT  +A+ +           
Sbjct: 1508 TAQMDVDGLVRTAVYSHLARCLSPAACIRLGLPAPSSVIGATHVSAEHRAGWLNNSKSSD 1567

Query: 1457 ---------------------------VANPAT-------NHMPMDGTVV---DSNGVDL 1389
                                       VAN A+       +   +D   V   DS G  L
Sbjct: 1568 YYTARTYRAELGVRGASGAAFSRHTATVANSASPVADIVRHFTDLDPEAVLHTDSTGYQL 1627

Query: 1388 APSAAP-------------PIDEFVRETHWHAKEHREVAGRGGATNQFKETAFVNPHV-- 1254
             P A P             P+D+  RE+     EH            F+  A   P    
Sbjct: 1628 -PEAQPITAQPDPVDDINEPMDDVQRESFLPENEH---------ILSFQHIADGAPDALH 1677

Query: 1253 HARADTATYFLSVAKRLTSRTQQ----ANLRRMLACPRRDMCDEFDRLVPVAPKWTPAKH 1086
            H RAD  T  +   KR+          +   R L   ++     FD    +A        
Sbjct: 1678 HTRADKVTDIMGQRKRIRIGKHDLPWSSKDARRLKSLKKGFSKFFDMDSWLAEPENFPLM 1737

Query: 1085 AEYTDRSIDEYTSTRTAEAVYGKLRAHDPDRTGSDIKITLKNQVIKKDEKRHKKEAIPGQ 906
             +     +  + S RT + +   +   D D   +  +I  K Q IKK  K  +  A   Q
Sbjct: 1738 EQCEAEKLASWASKRTKKTLVASIAKQDLDMHYTFTRIFPKGQYIKKKAK-WRCNAFASQ 1796

Query: 905  LVHEYDIRQTLEDAPFALFLED-ELIDAFPSNFLFYRRMSPQGFIDKYQSRWRVNNGVYS 729
             V ++ + +   DAP ALFLE   L  A+ S +L + R SP      Y++ W  + GV +
Sbjct: 1797 TVSDFHLGRIFRDAPRALFLEKMALKHAYDSTYL-HCRASPDDLSAWYRNHW--SPGVMT 1853

Query: 728  -SDVTRWDVGCDAGMLNFDVHVMRRCGLPNDYIESYMERRLSSRSQHGGMGTMQNSGDRY 552
             +D T WD G D   L FD+ +M  C  P +Y+E +   RL++ S  G     Q SGDR+
Sbjct: 1854 GNDYTAWDSGIDHVFLEFDLWLMEVCHFPVEYLERFRYERLNTHSFLGNHMPRQESGDRW 1913

Query: 551  TWSLNSIRRAVVTSLINAVCPEDT-VAINGDDS-AIDRFALSERFDDSPWEF--KDQNGM 384
            TW LN++R A +T   +  CP  T V I+GDDS  +  +  +  F+   W    K + G+
Sbjct: 1914 TWILNTLRNAALTG-ASLDCPRKTPVCISGDDSVTLGSWRKTTGFNPGEWLMVPKREEGV 1972

Query: 383  RGEFSGFELGGPKPEYSAGGILYRTMILESRDPSAMDKWVN 261
              EF G   GG    +    + +R+     +  +  D W++
Sbjct: 1973 TMEFCGLIFGGSDVSFDPAVVHWRSRFGLQQGRADADYWLS 2013



 Score = 78.2 bits (191), Expect = 9e-11
 Identities = 79/312 (25%), Positives = 129/312 (41%), Gaps = 16/312 (5%)
 Frame = -3

Query: 5642 SPQQHAVLNRHLLDYFKGVARSRETTPYAVDTSQLYLLDQIGMERPQPDAPTVPHGLHKS 5463
            SP +  +L+ H+  Y KG+A +R+  PY V T    LL + G+  P P A    H +H +
Sbjct: 181  SPLKSVILSMHMGAYGKGLASARQQCPYDVPTKLRPLLREAGISDPPPHAEPHSHPVHYA 240

Query: 5462 IEEFQLKLMRQWLAPNEYGLISVKASKTHL----LPAPGSVQNPVYEAKDVSRYPGAGLT 5295
            +    + +  + L    Y L +      +L      AP  V +P YE KD++RY G  + 
Sbjct: 241  LRNKYMAMAAKSLQGQWYALFAGADRINYLRSCGASAPSGVFSPRYEGKDITRYKGQPVP 300

Query: 5294 T---------SHLRDFPVHFLHDVSSEVGPHELVERLVADNPT-GHLFVTGMNPIEVVDR 5145
            T         S L   PV ++ D    +    +V      NPT  ++  T + P E +  
Sbjct: 301  TEGGLPQLEPSSLS--PVWYVCDTLHHLSA-SVVGSWFDKNPTLEYVVATTIIPPETLWG 357

Query: 5144 VKSFEPASHVIDYDLENFNFVFTGSESSAYYTPIATTVSWLRTAAVVGSNGLVYQVVLLD 4965
            + S   A +      +   ++  G   SAY  P++    WLRT A++        V LL 
Sbjct: 358  LPSLTRALYSYTIKGDTLTYIPEGHVGSAYVQPVSGN-RWLRTDALITPRNSCVHVSLLS 416

Query: 4964 YKLGHCVWHIFQSDVAIQDSRTFSTGSYVQVPAVL--TGTWSDEWLPSKMLTAILSFAPR 4791
                H +  I ++ +  Q SR     +   VP  +   GT         +  A+ ++  R
Sbjct: 417  QDFAHQLIVISRAPLLPQKSRLMGLRNVSVVPWFIHPMGTLYQRLTSPGLNRALQTYITR 476

Query: 4790 TPDTSFRNYAAK 4755
               TS R+  +K
Sbjct: 477  VGSTSIRDIYSK 488


>ref|YP_001655010.1| replicase protein [Phaius virus X] gi|166157387|dbj|BAG06154.1|
            replicase protein [Phaius virus X]
          Length = 1298

 Score =  130 bits (327), Expect = 2e-26
 Identities = 163/668 (24%), Positives = 265/668 (39%), Gaps = 16/668 (2%)
 Frame = -3

Query: 2402 TVPVRAYLGVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGFN 2223
            T+PV    G  GSGK+     +L         QV +   T  LRA    ++  P++K  N
Sbjct: 573  TLPVVVIHGAGGSGKSHVLQEFLRNQAHGY-DQVGLVLPTVELRADWMAKV--PKMKERN 629

Query: 2222 FPTIPSLITEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNT 2043
            F T    + +PS   +++D+  K   G ++   L +P V  +++ GDP Q  + +  ++ 
Sbjct: 630  FRTFEKAMVQPSPRTVIMDDYSKLPAGYVEAFCLFHPEVRTLILTGDPQQ-TSHYEANDQ 688

Query: 2042 QSEYDLSP-LAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLPVC 1866
                 L+P +   AP    Y   +HR  R LA++LGV+   +   H+T +     G P+ 
Sbjct: 689  AMSSKLAPAVEVFAPYCRYYLNATHRNKRDLANMLGVYGEQAGSTHITKSSTTLSGWPII 748

Query: 1865 TASPRYMGVLAGAGRRAYTYEGVQG-EDFREDMEVDATGLESAILDRTA-YVALTRSRTG 1692
              S      L   G RAY+Y G QG    R  + +D     +A+  + A Y AL+R+R  
Sbjct: 749  APSLAKKTCLTELGHRAYSYAGCQGLTTPRVQILLDN---NTALCSKEAMYTALSRARDA 805

Query: 1691 VFLHMEPLNPLANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPM 1512
            +              T P  ++    +        ++F D    L R   A  +E+  P 
Sbjct: 806  IHF----------INTGPNSTEYWQKL--SATPYLKAFLD----LHREEVATAVEAPAPA 849

Query: 1511 LPWFAPIGATIPTADFQLVANPATNHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETHWHA 1332
             P   P     P   F     PATN            G+ L P     ID++ RE     
Sbjct: 850  EPEIVP----EPKTHF-----PATN-----------AGMLLEPMKEALIDKYDREL---- 885

Query: 1331 KEHREVAGRGGATNQFK-ETAFVNPHVHARA-DTATYFLSVAKRLTSRTQQANLRRMLAC 1158
                 +  R G TN  + E + V    H +A D A  F ++  R+   + + N   +   
Sbjct: 886  -----LDSRHGYTNAIQTEDSTVQLFQHQQAKDEALLFKTIEARIKISSVKGN--ELEYV 938

Query: 1157 PRRDMCDEF-----------DRLVPVAPKWTPAKHAEYTDRSIDEYTSTRTAEAVYGKLR 1011
             ++D+ D             D  +P   +   +  AE   R +D+         + GK R
Sbjct: 939  MKKDIGDILFLNYKRVMKLPDHPIPFCQELWDSSKAEVQARYLDK----PIQNLINGKDR 994

Query: 1010 AHDPDRTGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELI 831
               PD     I + LK+Q +KK EK       PGQ +  +     +     A ++     
Sbjct: 995  -QCPDFPKQQIALFLKSQWVKKTEKIGAIPVKPGQTIASFMQETVMLYGTMARYMRRLRR 1053

Query: 830  DAFPSNFLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCG 651
               PSN       +P+      + RW+ +   +S+D T +D   D  ML F+V   +   
Sbjct: 1054 AYQPSNIFITCENTPEELDSWVKERWKFSRPAHSNDFTAFDQSQDGAMLQFEVIKAKHHS 1113

Query: 650  LPNDYIESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAI 471
            +P D IESY+  + ++    G +  M+ SG+  T+  N+            V  + +   
Sbjct: 1114 IPEDIIESYVRLKTNAHIFLGVIAIMRLSGEGPTFDANTECAIAYHHTKYRVSDDTSQLY 1173

Query: 470  NGDDSAID 447
             GDD A D
Sbjct: 1174 AGDDMAQD 1181


>ref|NP_659010.1| hypothetical protein GvEgp1 [Garlic virus E]
            gi|18621091|emb|CAC83705.1| hypothetical protein [Garlic
            virus E]
          Length = 1557

 Score =  113 bits (282), Expect = 3e-21
 Identities = 188/836 (22%), Positives = 302/836 (36%), Gaps = 24/836 (2%)
 Frame = -3

Query: 2861 QRIAATPARSMWKKFSNVARGLRLVVPETFVEPACAVSEPAGSGLDLKVTKIGATLAQNN 2682
            +R   TP  S+  +  N      +  PE   +P+    +   + LD    ++       N
Sbjct: 598  ERTLETPEDSVTGEAQNCDGSRHIDEPEERGQPSKQTCKVELTPLDADTVELLKLHGFTN 657

Query: 2681 DNAVRNNEAP------RPARWTVLRNELATVLHKYKALQLPAVTLAEEVIQYTADIDRAA 2520
              A  + E+        P    + + +  T  H+ + + + A  L      Y  D  RA 
Sbjct: 658  YRAQYDGESQIQPIYRNPHAHFLRQYDAQTTTHQQQFVDM-AHGLKRRCYGYKVDAKRAT 716

Query: 2519 RLVADLKAHPHVLGSRGNPVVLQALDSILDLHKLS---GAKITVPVRAYLGVAGSGKTTA 2349
              ++D+K       +    +VL  LD  L    ++    A  TV +    G  G+GK+ A
Sbjct: 717  AFMSDVK-------NNLTGLVLPKLDRDLLSSWVALAENATRTVGLIVIHGAGGAGKSRA 769

Query: 2348 TVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLITEPSVGPIVL 2169
                L         +V I   T +L A  K +L  P L      T            +++
Sbjct: 770  LQELLRN-RVVDANEVNIVVPTINLAADWKKKL--PALDPRRVMTFEKACEREGKSVVIM 826

Query: 2168 DEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSPLAALAPQVTR 1989
            D+ GK   G +D  +     V  +V+ GD  Q +      ++Q       +A L+P    
Sbjct: 827  DDYGKLPAGYVDAYLAIKSNVELIVLTGDQRQSVYHNDKRDSQ-------IALLSPNTEH 879

Query: 1988 -------YATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGVLAG 1830
                   Y   +HR  R LA+ + VH    V G V H             + R   +L  
Sbjct: 880  FKRYCDYYVNATHRQPRRLANPIRVHAEREVGGAVKHATLIPTNAMTLVPAFRSQSLLTD 939

Query: 1829 AGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTR-SRTGVFLHMEPLNPLAN 1653
             GR+A TY G QG      + +          D   Y AL+R S T  F++    N    
Sbjct: 940  LGRQAMTYAGCQGLTLPH-LTIVLDKDTPLCSDEVLYTALSRASETITFVNTHSDNKEFL 998

Query: 1652 AKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIGATIPT 1473
            AK   T    L  ++ G+RE  QS  D                  P  P           
Sbjct: 999  AKLDAT--PYLKTLISGVREDEQSGGD----------------YQPPEP----------- 1029

Query: 1472 ADFQLVANPATNHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETHWHAKEHREVAGRGGAT 1293
               Q+   P   HMP     V +N + L        D+  RE  W  +E   +       
Sbjct: 1030 ---QVRDGPTKTHMP-----VANNNIQLEEKIETMEDKDTREL-WSGEEKTNLMQTQDPV 1080

Query: 1292 NQFKETAFVNPHVHARADTATYFLSVAKRLTSRTQQANLRRMLACPRRDMCD----EFDR 1125
             Q      + PH  ++ D A + +++ +R+  RT      +   C      D     + +
Sbjct: 1081 VQ------LFPHQQSK-DEALFKITIKERI--RTADVGTNKKALCETLSAGDLLFEAYAK 1131

Query: 1124 LVPVAPKWTPAKH---AEYTDRSIDEYTSTRTAEAVYGKLRAHDPDRTGSDIKITLKNQV 954
             + V  +  P      A     ++  Y S  T     G  R  DPD   + I +  K+Q 
Sbjct: 1132 FMNVPQETQPFDKRLWAHCKQLALRTYLSKPTTNLQQGAQR-QDPDFPDNAIALFNKSQW 1190

Query: 953  IKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDAFPSNFLFYRRMSPQGFI 774
            +KK EK   K    GQ +  +     L     AL+L  +     P N       +P+ F 
Sbjct: 1191 VKKLEKVGCKFKA-GQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFVMCEKTPEQFD 1249

Query: 773  DKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDYIESYMERRLSSRSQ 594
                ++W  +   Y+SD T++D   DA  LNF++   R  G+PN+ ++ Y   +  +++ 
Sbjct: 1250 SFVLTKWDFSRPNYTSDYTQYDQSQDAAFLNFELRKARHFGIPNEVVDFYAFIKTHAKTF 1309

Query: 593  HGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAINGDDSAIDRFALSER 426
             G +  M+ SG+  T+  N+       +L   V         GDD   D+ A  ER
Sbjct: 1310 LGNLAIMRLSGEGPTFDANTECNIAYDALRFQVDSTVNACYAGDDLVRDK-ACEER 1364


>gb|AGC67029.1| replicase [Shallot virus X]
          Length = 1719

 Score =  110 bits (276), Expect = 1e-20
 Identities = 161/730 (22%), Positives = 275/730 (37%), Gaps = 13/730 (1%)
 Frame = -3

Query: 2576 AVTLAEEVIQYTADIDRAARLVADLKAHPHVLGSRGNPVVLQALDSILDLHKLSGAKIT- 2400
            A +L   +  +  D  RA   ++D+K       +    +VL  LD  L    ++ A+ T 
Sbjct: 853  ATSLHRGIYTHKIDNRRATAYMSDVK-------NNLTGLVLPKLDRDLLSSWVALAETTT 905

Query: 2399 --VPVRAYLGVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGF 2226
              V V A  G  G+GK+ A    L +  P +   + I   T +L    K +L  P++   
Sbjct: 906  REVAVLAIHGAGGAGKSRALQELLRS-SPELADSINIVVPTINLANDWKAKL--PQMDPR 962

Query: 2225 NFPTIPSLITEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSN 2046
               T             + D+ GK   G +D  +     V   ++ GD  Q        +
Sbjct: 963  RVMTFEKACERECKSVTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQS-----THH 1017

Query: 2045 TQSEYDLSPLAALAPQVTRYA----TVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIG 1878
             + E  +S L +   Q ++YA      +HR  R LA+ + VH    + G V         
Sbjct: 1018 QERESQISSLQSNIAQFSKYADYYLNATHRQPRRLANPIKVHAERQLGGAVLKANIVPDL 1077

Query: 1877 LPVCTASPRYMGVLAGAGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTRSR 1698
              V   + R   +L   GR A TY G QG      + +          D   Y A +R+ 
Sbjct: 1078 AMVLVPAFRSQSLLTDLGRHAMTYAGCQGLTLNH-LTIILDKDTPLCSDEVLYTAFSRAS 1136

Query: 1697 TGV-FLHMEPLNPLANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESC 1521
              + F++    NP   AK   T    L  ++  +RE  Q+                    
Sbjct: 1137 ESITFVNTHSDNPAFLAKLDAT--PYLKTLISWVREDEQA-------------------- 1174

Query: 1520 MPMLPWFAPIGATIPTADFQLVANPATNHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETH 1341
                      GA  P  +  +   P   H+P     V ++ V L        D+  RE  
Sbjct: 1175 ----------GADCPATEPHVEDVPTKTHIP-----VANDKVQLEGKIEAMEDKDTREL- 1218

Query: 1340 WHAKEHREVAGRGGATNQFKETAFVNPHVHARADTATYFLSVAKRLTSRTQQANLRRMLA 1161
            W  +E   +        Q      + PH  A+ D A + +++ +R+   T + N++++  
Sbjct: 1219 WSGEEKTNLMQTQDPVVQ------LFPHQQAK-DEALFKITIGERIRMATPEQNIKQLRH 1271

Query: 1160 CPRRD--MCDEFDRLVPVAPKWTPAKHAEYT---DRSIDEYTSTRTAEAVYGKLRAHDPD 996
                   + + + + + V  +  P     +T     ++  Y S  T+    G  R  DPD
Sbjct: 1272 TLNAGDLLFEAYAQFMKVPKETQPFDKRLWTHCRQLALRTYLSKPTSNLQQGATR-QDPD 1330

Query: 995  RTGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDAFPS 816
               + I +  K+Q +KK EK   +    GQ +  +     L     AL+L  +     P 
Sbjct: 1331 FPDNAIALFNKSQWVKKLEKVGARFKA-GQTISAFKQEVVLLTTTMALYLRKKREQHQPD 1389

Query: 815  NFLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDY 636
            N       +P+ F     ++W  +   Y+SD T++D   DA  LNF++   R  G+P D 
Sbjct: 1390 NVFIMCERTPEQFNAFVMTKWDFDRPNYTSDYTQYDQSQDAAFLNFEIRKARHLGVPEDV 1449

Query: 635  IESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAINGDDS 456
            +  Y   +  +++  G +  M+ SG+  T+  N+       +L   +  +      GDD 
Sbjct: 1450 LSFYKFIKTHAKTFLGNLAIMRLSGEGPTFDANTECNIAYDALRFRLGDDVRACYAGDDL 1509

Query: 455  AIDRFALSER 426
              D+ A  ER
Sbjct: 1510 VRDK-ACEER 1518


>gb|AFV61767.1| replicase [Garlic virus X]
          Length = 1544

 Score =  109 bits (273), Expect = 3e-20
 Identities = 165/754 (21%), Positives = 281/754 (37%), Gaps = 22/754 (2%)
 Frame = -3

Query: 2621 ELATVLHKYKALQLP----------------AVTLAEEVIQYTADIDRAARLVADLKAHP 2490
            ++A V + ++A QLP                A  L      YT D  RA   ++D+K + 
Sbjct: 655  QIAPVFYNHQACQLPLYDGITNSVQSKFIEMAHALKRNCYNYTLDAKRATAFMSDVKNN- 713

Query: 2489 HVLGSRGNPVVLQALDSILDLHKLSGAKITVPVRAYLGVAGSGKTTATVAYLHTLEPAVR 2310
             + G     +    L S + L + +  K+ + V    G  G+GK+ A    L +      
Sbjct: 714  -LTGLVLPKLDRDLLTSWVALSENACRKVGLIV--IHGAGGAGKSRALQEILRS-NSIDT 769

Query: 2309 QQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLITEPSVGPIVLDEAGKYWGGMLDL 2130
             +V I   T +L    K ++  P++      T            +++D+ GK   G +D 
Sbjct: 770  NEVNIIVPTINLAVDWKKKM--PKIDPRRVMTFEKACEREGKSVVIMDDYGKLPAGYIDA 827

Query: 2129 IILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSPLAALAPQVTRYATVSHRMFRILA 1950
             +     V  V++ GD  Q +      ++Q     S  A        Y   +HR  R LA
Sbjct: 828  YLAIKFNVEIVILTGDQRQSVFHNDRKDSQIALLTSNTAHFKRYCDYYLNATHRQPRRLA 887

Query: 1949 DVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGVLAGAGRRAYTYEGVQGEDFREDM 1770
            + + VH    V G + H+            + R   +L   GR+A TY G QG      +
Sbjct: 888  NPIRVHAEREVGGAIKHSTLIPTHAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPH-L 946

Query: 1769 EVDATGLESAILDRTAYVALTR-SRTGVFLHMEPLNPLANAKTQPTGSDLLNAILFGMRE 1593
             +          D   Y AL+R S T  F++    N     K   T    L  ++ G+RE
Sbjct: 947  TIVLDKDTPLCSDEVLYTALSRASETITFVNTYSSNKDFLDKLDST--PYLKTLISGVRE 1004

Query: 1592 RNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIGATIPTADFQLVANPATNHMPMDGTV 1413
              Q+                              GA IP  + ++   P   H+P     
Sbjct: 1005 DEQA------------------------------GAEIPPPEPEVRDAPTKTHIP----- 1029

Query: 1412 VDSNGVDLAPSAAPPIDEFVRETHWHAKEHREVAGRGGATNQFKETAFVNPHVHARADTA 1233
            V +N V L        D+  RE  W  +E   +        Q      + PH  A+ D A
Sbjct: 1030 VANNNVQLESKIETMEDKDTREL-WSGEEKTNLMQTQDPVIQ------LFPHQQAK-DEA 1081

Query: 1232 TYFLSVAKRLTSRTQQANLRRMLACPRRD--MCDEFDRLVPVAPKWTPAKH---AEYTDR 1068
             + +++ +R+     + N + +         + + +   + V  +  P      A     
Sbjct: 1082 LFKITINERIKLANPETNCKALKETLNTGNLLFEAYANFMNVPRETQPFDKRLWAHCRQL 1141

Query: 1067 SIDEYTSTRTAEAVYGKLRAHDPDRTGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYD 888
            ++  Y S  T+    G  R  DPD   + I +  K+Q +KK EK   K    GQ +  + 
Sbjct: 1142 ALRTYLSKPTSNLQQGAQR-QDPDFPENAIALFNKSQWVKKLEKVGCKFKA-GQTISAFK 1199

Query: 887  IRQTLEDAPFALFLEDELIDAFPSNFLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWD 708
                L     AL+L  +     P N       +P+ F     ++W  +   Y+SD T++D
Sbjct: 1200 QSTVLLTTTMALYLRKKRESHQPDNIFVMCEKTPEQFNSFVLTKWDFSRPNYTSDYTQYD 1259

Query: 707  VGCDAGMLNFDVHVMRRCGLPNDYIESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIR 528
               D+  LNF++   +  GLP++ ++ Y   +  +++  G +  M+ SG+  T+  N+  
Sbjct: 1260 QSQDSAFLNFELRKAKHFGLPDEIVDFYAFIKTHAKTFLGNLAVMRLSGEGPTFDANTEC 1319

Query: 527  RAVVTSLINAVCPEDTVAINGDDSAIDRFALSER 426
                 +L   +         GDD   D+ A  ER
Sbjct: 1320 NIAYDALRFQLDSTVNACYAGDDLVRDK-ACDER 1352


>gb|AKN20462.1| replicase [Strawberry mild yellow edge virus]
          Length = 1323

 Score =  108 bits (269), Expect = 9e-20
 Identities = 152/657 (23%), Positives = 250/657 (38%), Gaps = 12/657 (1%)
 Frame = -3

Query: 2378 GVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLI 2199
            G  GSGK+     ++ TL+   R+   I    E    +T      P+     F T    +
Sbjct: 605  GAGGSGKSQRLQDWMRTLKKNSRECTVILPTAE---LRTDWVNKVPKQSLDTFKTWEKGL 661

Query: 2198 TEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSP 2019
             +P    ++LD+ GK   G  + +    P +  +++ GD  Q +         +    S 
Sbjct: 662  IQPPNRVVILDDYGKLPAGYPEALCANYPNIELLILTGDSRQSVHNEHNKQAATASLESN 721

Query: 2018 LAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGV 1839
            +   A     Y   +HR  + LA+ LGV+        VT +     G PV        G 
Sbjct: 722  VECWAQYCRFYVNATHRNVKRLANALGVYGERDEPLKVTCSSHVYEGWPVLAPGLLKAGN 781

Query: 1838 LAGAGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTRSRTGVFLHMEPLNPL 1659
            LA  GRRA+TY G QG      +++           R  Y AL+R+          +N +
Sbjct: 782  LAECGRRAFTYAGCQGLTTPR-VQILLDNDTPLCSQRVMYTALSRA----------VNEI 830

Query: 1658 ANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIGATI 1479
                T P+G D                    +W            C P L  F  +   I
Sbjct: 831  HFVNTGPSGDD--------------------FWTKL--------DCTPFLKTFLELSREI 862

Query: 1478 PTADFQLVANPATNHMPMDGTV-----VDSNGVDLAPSAAPPIDEFVRETHWHAKEHREV 1314
                 Q+         P + TV     V++  + L P      ++F RE +  +KE+   
Sbjct: 863  -----QIPEGGCQETCPTELTVKTHFPVENPNLVLEPYVEKMAEKFDRELY--SKEY--- 912

Query: 1313 AGRGGATNQFKETAFVNPHVHARADTATYFLSVAKRLTSRTQQANLRRMLACPRRDMCD- 1137
             G   A         + PH  A+ DT  +  ++ +RL   T+Q N        +RD+ D 
Sbjct: 913  -GYSNAIQTEDPVIQLFPHQQAKDDTLMW-ATIDQRLAITTKQDNETEFAL--KRDIGDL 968

Query: 1136 ---EFDRLVPVAPKWTPAKHAEYTDRSIDEYTSTRTAE---AVYGKLRAHDPDRTGSDIK 975
                + R + + PK       E      +E   T  A+   ++   +   DPD   ++IK
Sbjct: 969  LFINYHRAMKL-PKNPIPFDKELWQACKNEVQKTYLAKDVSSIVNGIARQDPDFPINEIK 1027

Query: 974  ITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDAFPSNFLFYRR 795
            + LK+Q +KK EK       PGQ +  +     +     A ++        PSN      
Sbjct: 1028 LFLKSQWVKKVEKLGMVVK-PGQTIASFAQAPVMLYGTMARYMRRMREVYQPSNIFINCE 1086

Query: 794  MSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDYIESYMER 615
             +P    +  ++ W  +   +S+D T +D   D  ML F+V   +   +P+D I+SY+E 
Sbjct: 1087 KTPADLDEWAKANWNFDGLAHSNDFTAFDQSQDGAMLQFEVIKAKFHNVPSDIIKSYVEL 1146

Query: 614  RLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAINGDDSAIDR 444
            + +++   G +  M+ SG+  T+  N+            V P+      GDDSA DR
Sbjct: 1147 KTNAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVEPDVAQVYAGDDSAQDR 1203


>gb|AHB33487.1| replicase [Garlic virus A]
          Length = 1612

 Score =  107 bits (266), Expect = 2e-19
 Identities = 171/745 (22%), Positives = 280/745 (37%), Gaps = 17/745 (2%)
 Frame = -3

Query: 2576 AVTLAEEVIQYTADIDRAARLVADLKAHPHVLGSRGNPVVLQALDSILDLHKLSGAKIT- 2400
            A +L   V  Y  +  RA   ++D+K       +    +VL  LD  L    ++ A+ T 
Sbjct: 757  AASLHRGVYNYRINNKRATAYMSDVK-------NNLTGLVLPKLDRDLLSSWVALAERTT 809

Query: 2399 --VPVRAYLGVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGF 2226
              V +    G  G+GK+ A    L    PA+ + V I   T +L    K +L  P +   
Sbjct: 810  RDVGLLVIHGAGGAGKSRALQELLRN-SPALLEAVNIVVPTINLANDWKKKL--PSMDPR 866

Query: 2225 NFPTIPSLITEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSN 2046
               T             + D+ GK   G +D  +     V   ++ GD  Q        +
Sbjct: 867  RVMTFEKACERECKAVTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQSTHH---QD 923

Query: 2045 TQSEYDL--SPLAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLP 1872
             +S+  L  S +A  AP    Y   +HR  R LA+ + VH    + G V  +        
Sbjct: 924  RESQIALLSSNVAHFAPYTDYYINATHRQPRRLANPIKVHAERLLGGAVRRSDLVPDRAM 983

Query: 1871 VCTASPRYMGVLAGAGRRAYTYEGVQGEDFREDMEV--DATGLESAILDRTAYVALTRSR 1698
            V   + R   +L   GR+A TY G QG        V    T L S  +  TA+   + S 
Sbjct: 984  VLVPAFRSQSLLTDLGRQAMTYAGCQGLTLNHLTIVLDKDTPLCSEEVLYTAFSRASESI 1043

Query: 1697 TGVFLHMEPLNPLANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCM 1518
            T V  H +    LA   T P     L  ++  +RE  Q+                     
Sbjct: 1044 TFVNTHSDNPEFLAKLDTTP----YLKTLISWVREDEQA--------------------- 1078

Query: 1517 PMLPWFAPIGATIPTADFQLVANPATNHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETHW 1338
                     GA+ P  +  +   P   H+P     V ++ V L        D+  RE  W
Sbjct: 1079 ---------GASEPPPEPNVRDEPTKTHIP-----VTNDRVQLDDKVETMEDKDTREL-W 1123

Query: 1337 HAKEHREVAGRGGATNQFKETAFVNPHVHARADTATYFLSVAKRLTSRTQQANLRRMLAC 1158
              +E   +        Q      + PH  A+ D A + +++ +R+ +   + N + +   
Sbjct: 1124 SGEEKTNLMQTQDPVVQ------LFPHQQAK-DEALFKITINERIRTANPEKNAKSLQQT 1176

Query: 1157 PRRD--MCDEFDRL--VPVAPK------WTPAKHAEYTDRSIDEYTSTRTAEAVYGKLRA 1008
                  + + + +   VP  P+      WT  +       ++  Y S   A    G  R 
Sbjct: 1177 LNAGDLLFEAYAQFMKVPAEPQAFDKRLWTHCRQL-----ALRTYLSKPAANLQQGASR- 1230

Query: 1007 HDPDRTGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELID 828
             DPD   + I +  K+Q +KK EK   K    GQ +  +  +  L     AL+L  +   
Sbjct: 1231 QDPDFPDNAIALFNKSQWVKKLEKVGAKFKA-GQTISAFKQQVVLLTTTMALYLRKKREQ 1289

Query: 827  AFPSNFLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGL 648
              P N       +P+ F +   ++W      Y+SD T++D   DA  LNF++   R  G+
Sbjct: 1290 HQPDNIFIMCEKTPEQFNNFVLTKWDFKRPNYTSDYTQYDQSQDASFLNFELRKARHLGV 1349

Query: 647  PNDYIESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAIN 468
            P + +  Y   +  +++  G +  M+ SG+  T+  N+       +L   +         
Sbjct: 1350 PEEVLSFYRFIKTHAKTFVGNLAIMRLSGEGPTFDANTECNIAYDALRFRLDDNVCACYA 1409

Query: 467  GDDSAIDRFALSERFDDSPWEFKDQ 393
            GDD   DR A  ER   + W + +Q
Sbjct: 1410 GDDLVRDR-ACEER---AGWVYSEQ 1430


>gb|AGC09135.1| Replicase, partial [Garlic virus A]
          Length = 891

 Score =  107 bits (266), Expect = 2e-19
 Identities = 171/745 (22%), Positives = 280/745 (37%), Gaps = 17/745 (2%)
 Frame = -3

Query: 2576 AVTLAEEVIQYTADIDRAARLVADLKAHPHVLGSRGNPVVLQALDSILDLHKLSGAKIT- 2400
            A +L   V  Y  +  RA   ++D+K       +    +VL  LD  L    ++ A+ T 
Sbjct: 36   AASLHRGVYNYRINNKRATAYMSDVK-------NNLTGLVLPKLDRDLLSSWVALAERTT 88

Query: 2399 --VPVRAYLGVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGF 2226
              V +    G  G+GK+ A    L    PA+ + V I   T +L    K +L  P +   
Sbjct: 89   RDVGLLVIHGAGGAGKSRALQELLRN-SPALLEAVNIVVPTINLANDWKKKL--PSMDPR 145

Query: 2225 NFPTIPSLITEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSN 2046
               T             + D+ GK   G +D  +     V   ++ GD  Q        +
Sbjct: 146  RVMTFEKACERECKAVTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQSTHH---QD 202

Query: 2045 TQSEYDL--SPLAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLP 1872
             +S+  L  S +A  AP    Y   +HR  R LA+ + VH    + G V  +        
Sbjct: 203  RESQIALLSSNVAHFAPYTDYYINATHRQPRRLANPIKVHAERLLGGAVRRSDLVPDRAM 262

Query: 1871 VCTASPRYMGVLAGAGRRAYTYEGVQGEDFREDMEV--DATGLESAILDRTAYVALTRSR 1698
            V   + R   +L   GR+A TY G QG        V    T L S  +  TA+   + S 
Sbjct: 263  VLVPAFRSQSLLTDLGRQAMTYAGCQGLTLNHLTIVLDKDTPLCSEEVLYTAFSRASESI 322

Query: 1697 TGVFLHMEPLNPLANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCM 1518
            T V  H +    LA   T P     L  ++  +RE  Q+                     
Sbjct: 323  TFVNTHSDNPEFLAKLDTTP----YLKTLISWVREDEQA--------------------- 357

Query: 1517 PMLPWFAPIGATIPTADFQLVANPATNHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETHW 1338
                     GA+ P  +  +   P   H+P     V ++ V L        D+  RE  W
Sbjct: 358  ---------GASEPPPEPNVRDEPTKTHIP-----VTNDRVQLDDKVETMEDKDTREL-W 402

Query: 1337 HAKEHREVAGRGGATNQFKETAFVNPHVHARADTATYFLSVAKRLTSRTQQANLRRMLAC 1158
              +E   +        Q      + PH  A+ D A + +++ +R+ +   + N + +   
Sbjct: 403  SGEEKTNLMQTQDPVVQ------LFPHQQAK-DEALFKITINERIRTANPEKNAKSLQQT 455

Query: 1157 PRRD--MCDEFDRL--VPVAPK------WTPAKHAEYTDRSIDEYTSTRTAEAVYGKLRA 1008
                  + + + +   VP  P+      WT  +       ++  Y S   A    G  R 
Sbjct: 456  LNAGDLLFEAYAQFMKVPAEPQAFDKRLWTHCRQL-----ALRTYLSKPAANLQQGASR- 509

Query: 1007 HDPDRTGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELID 828
             DPD   + I +  K+Q +KK EK   K    GQ +  +  +  L     AL+L  +   
Sbjct: 510  QDPDFPDNAIALFNKSQWVKKLEKVGAKFKA-GQTISAFKQQVVLLTTTMALYLRKKREQ 568

Query: 827  AFPSNFLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGL 648
              P N       +P+ F +   ++W      Y+SD T++D   DA  LNF++   R  G+
Sbjct: 569  HQPDNIFIMCEKTPEQFNNFVLTKWDFKRPNYTSDYTQYDQSQDASFLNFELRKARHLGV 628

Query: 647  PNDYIESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAIN 468
            P + +  Y   +  +++  G +  M+ SG+  T+  N+       +L   +         
Sbjct: 629  PEEVLSFYRFIKTHAKTFVGNLAIMRLSGEGPTFDANTECNIAYDALRFRLDDNVCACYA 688

Query: 467  GDDSAIDRFALSERFDDSPWEFKDQ 393
            GDD   DR A  ER   + W + +Q
Sbjct: 689  GDDLVRDR-ACEER---AGWVYSEQ 709


>gb|ALI93569.1| replicase [Strawberry mild yellow edge virus]
          Length = 1323

 Score =  106 bits (264), Expect = 3e-19
 Identities = 151/657 (22%), Positives = 247/657 (37%), Gaps = 12/657 (1%)
 Frame = -3

Query: 2378 GVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLI 2199
            G  GSGK+     ++ TL+   R+   I    E    +T      P+     F T    +
Sbjct: 605  GAGGSGKSQRLQDWMRTLKKNSRECTVILPTAE---LRTDWVNKVPKQSLDTFKTWEKGL 661

Query: 2198 TEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSP 2019
             +P    ++LD+ GK   G  + +    P +  +++ GD  Q +         +    S 
Sbjct: 662  IQPPNRVVILDDYGKLPAGYPEALCANYPNIELLILTGDSRQSVHNEHNKQAATASLESN 721

Query: 2018 LAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGV 1839
            +         Y   +HR  + LA+ LGV+        VT +     G PV        G 
Sbjct: 722  VECWTQHCRFYVNATHRNVKRLANALGVYGERDEPLKVTCSSHVYEGWPVLAPGLLKAGN 781

Query: 1838 LAGAGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTRSRTGVFLHMEPLNPL 1659
            LA  GRRA+TY G QG      +++           R  Y AL+R+          +N +
Sbjct: 782  LAECGRRAFTYAGCQGLTTPR-VQILLDNDTPLCSQRVMYTALSRA----------VNEI 830

Query: 1658 ANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIGATI 1479
                T P+G D                    +W            C P L  F  +   I
Sbjct: 831  HFVNTGPSGDD--------------------FWTKL--------DCTPFLKTFLELSREI 862

Query: 1478 PTADFQLVANPATNHMPMDGTV-----VDSNGVDLAPSAAPPIDEFVRETHWHAKEHREV 1314
                 Q+         P + TV     V++  + L P      ++F RE +  +KE+   
Sbjct: 863  -----QIPEGGCQETRPTELTVKTHFPVENPNLVLEPYVEKMAEKFDRELY--SKEY--- 912

Query: 1313 AGRGGATNQFKETAFVNPHVHARADTATYFLSVAKRLTSRTQQANLRRMLACPRRDMCD- 1137
             G   A         + PH  A+ DT  +  ++ +RL   T+Q N        +RD+ D 
Sbjct: 913  -GYSNAIQTEDPVIQLFPHQQAKDDTLMW-ATIDQRLAITTKQDNETEFAL--KRDIGDL 968

Query: 1136 ---EFDRLVPVAPKWTPAKHAEYTDRSIDEYTSTRTAE---AVYGKLRAHDPDRTGSDIK 975
                + R + + PK       E      +E   T  A+   ++   +   DPD   ++IK
Sbjct: 969  LFINYHRAMKL-PKNPIPFDKELWQACKNEVQKTYLAKDVSSIVNGIARQDPDFPINEIK 1027

Query: 974  ITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDAFPSNFLFYRR 795
            + LK+Q +KK EK       PGQ +  +     +     A ++        PSN      
Sbjct: 1028 LFLKSQWVKKVEKLGMVVK-PGQTIASFAQAPVMLYGTMARYMRRMREVYQPSNIFINCE 1086

Query: 794  MSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDYIESYMER 615
             +P    +  ++ W      +S+D T +D   D  ML F+V   +   +P+D I SY+E 
Sbjct: 1087 KTPADLDEWAKANWNFEGLAHSNDFTAFDQSQDGAMLQFEVIKAKFHNVPSDIINSYVEL 1146

Query: 614  RLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAINGDDSAIDR 444
            + +++   G +  M+ SG+  T+  N+            V P+      GDDSA DR
Sbjct: 1147 KTNAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVEPDVAQVYAGDDSAQDR 1203


>gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Zealand]
          Length = 1643

 Score =  105 bits (263), Expect = 4e-19
 Identities = 156/701 (22%), Positives = 279/701 (39%), Gaps = 27/701 (3%)
 Frame = -3

Query: 2378 GVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRA--QTKLQLDFPELKGFNFPTIPS 2205
            G  GSGK+ A   ++ +L+   +  V + + T  LR   QTKL    P L    F T   
Sbjct: 868  GCGGSGKSFAIQEWMRSLKED-QSVVTVVTPTVLLRNDWQTKL----PILPADVFKTFEK 922

Query: 2204 LITEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDL 2025
             + +P    +V D+  K   G+++ +++ +  V  +++ GD  Q +  +  +N+++    
Sbjct: 923  SVIQPCNPILVFDDYTKLPPGLIESVVMHHQNVVFIILTGDNRQSV--YHETNSEAYIAA 980

Query: 2024 SPLAA--LAPQVTRYATVSHRMFRILADVLGVHTTNS---VVGHVTHTIAAKIGLPVCTA 1860
             P A    +P    Y   +HR  + LA+ LGV++       V   +H + A   +P+   
Sbjct: 981  LPEATEIFSPYCEFYLNATHRNVKDLANKLGVYSEREGKLKVNFASHHLKAS-RIPMLVP 1039

Query: 1859 SPRYMGVLAGAGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTRSRTGVFLH 1680
            S      +   G  + TY G QG    + +++          +R  Y  L+R+       
Sbjct: 1040 STMKRNAMFDMGHHSMTYAGCQGLTAPK-IQILLDNHTQFCSERVLYTCLSRA------- 1091

Query: 1679 MEPLNPLANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPMLPWF 1500
               ++ +    T PT  D                    YW         LES  P L  F
Sbjct: 1092 ---VDTIHFINTGPTTGD--------------------YWAK-------LEST-PYLKAF 1120

Query: 1499 APIGATIPTADFQLVANPATNHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETHWHAKEHR 1320
                    T  +   + PA+     + T  ++       +  P ++  V +     KE R
Sbjct: 1121 IDTYRDEKTEVYN--SQPAS----AEPTEPEAPATHFPTAPKPLLEPLVEKLT--DKEAR 1172

Query: 1319 EVAGRG-GATNQFK-ETAFVNPHVHARA-DTATYFLSVAKRLTSRTQQANLRRMLACPRR 1149
            E+     G +N  + E + V    H +A D   Y+ ++  RL   T +ANLR      +R
Sbjct: 1173 EIFSPAFGYSNAIQTEDSVVQLFQHQQAKDETLYWATIDTRLAISTPEANLREFNM--KR 1230

Query: 1148 DMCD----EFDRLVPVAPKWTPAKHAEYTDRSIDEYTSTRTAEAVYGKLRA---HDPDRT 990
            D+ D     + +L+ + P+  P +   +   S DE  +T  ++ +   + A     PD  
Sbjct: 1231 DIGDILFMNYSKLMCLPPEPVPFEERLWKI-SADEVRNTYISKPIGNLVNAAARQSPDFP 1289

Query: 989  GSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDAFPSNF 810
             + I + LK+Q +KK EK    +  PGQ +  +     +     A +L        P N 
Sbjct: 1290 KNKIALFLKSQWVKKTEKLGTLKVKPGQTIASFMQETVMLYGTMARYLRKMRRRFQPDNI 1349

Query: 809  LFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDYIE 630
                  +P+      +S+W  +   +++D T +D   D  ML F+V   +   +P + IE
Sbjct: 1350 FINCETTPEDLDKFIKSQWDFSRPAHTNDFTAFDQSQDGAMLQFEVIKAKFFNIPAEIIE 1409

Query: 629  SYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAINGDDSAI 450
             Y+  +L++    G +G M+ SG+  T+  N+       +    +  +      GDD A+
Sbjct: 1410 GYIYIKLNAAIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFHITDDTAQVYAGDDMAL 1469

Query: 449  DRFALSE----------RFDDSPWEFKDQNGMRGEFSGFEL 357
            DR ++ +          +    P   K   G   EF G+ L
Sbjct: 1470 DRVSIEKDSFNRLEKQLKLTSKPMFPKQVKGDYAEFCGWVL 1510


>emb|CAC83699.1| RNA-dependent RNA-polymerase [Garlic virus X]
          Length = 1544

 Score =  105 bits (262), Expect = 6e-19
 Identities = 164/754 (21%), Positives = 278/754 (36%), Gaps = 22/754 (2%)
 Frame = -3

Query: 2621 ELATVLHKYKALQLP----------------AVTLAEEVIQYTADIDRAARLVADLKAHP 2490
            ++A V + ++A QLP                A  L      YT D  RA   ++D+K + 
Sbjct: 655  QIAPVFYNHQACQLPLYDGITNSVQSKFIEMAHALKRNCYNYTLDARRATAFMSDVKNN- 713

Query: 2489 HVLGSRGNPVVLQALDSILDLHKLSGAKITVPVRAYLGVAGSGKTTATVAYLHTLEPAVR 2310
             + G     +    L S + L + +  K+ + V    G  G+GK+ A    L +      
Sbjct: 714  -LTGLVLPKLDRDLLTSWVALSENACRKVGLIV--IHGAGGAGKSRALQEILRS-NSIDT 769

Query: 2309 QQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLITEPSVGPIVLDEAGKYWGGMLDL 2130
             +V I   T +L    K ++  P++      T            +++D+ GK   G +D 
Sbjct: 770  NEVNIIVPTINLAVDWKKKM--PKIDPRRVMTFEKACEREGKSVVIMDDYGKLPAGYIDA 827

Query: 2129 IILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSPLAALAPQVTRYATVSHRMFRILA 1950
             +     V  V++ GD  Q +      ++Q     S  A        Y   +HR  R LA
Sbjct: 828  YLAIKFNVEIVILTGDQRQSVFHNDRKDSQIALLTSNTAHFKRYCDYYLNATHRQPRRLA 887

Query: 1949 DVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGVLAGAGRRAYTYEGVQGEDFREDM 1770
            + + VH    V G + H+            + R   +L   GR+A TY G QG      +
Sbjct: 888  NPIRVHAEREVGGAIKHSTLIPTHAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPH-L 946

Query: 1769 EVDATGLESAILDRTAYVALTR-SRTGVFLHMEPLNPLANAKTQPTGSDLLNAILFGMRE 1593
             +          D   Y AL+R S T  F++    N     K   T    L  ++ G+RE
Sbjct: 947  TIVLDKDTPLCSDEVLYTALSRASETITFVNTYSNNKDFLDKLDST--PYLKTLISGVRE 1004

Query: 1592 RNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIGATIPTADFQLVANPATNHMPMDGTV 1413
              Q+                              GA  P  + ++   P   H+P     
Sbjct: 1005 DEQA------------------------------GAEFPPPEPEVRDAPTKTHIP----- 1029

Query: 1412 VDSNGVDLAPSAAPPIDEFVRETHWHAKEHREVAGRGGATNQFKETAFVNPHVHARADTA 1233
            V +N V L        D+  RE  W  +E   +        Q      + PH  A+ D A
Sbjct: 1030 VANNNVQLESKIETMEDKDTREL-WSGEEKTNLMQTQDPVIQ------LFPHQQAK-DEA 1081

Query: 1232 TYFLSVAKRLTSRTQQANLRRMLACPRRD--MCDEFDRLVPVAPKWTPAKH---AEYTDR 1068
             + +++ +R+     + N + +         + + +   + V  +  P      A     
Sbjct: 1082 LFKITINERIKLANPETNCKALKETLNTGNLLFEAYASFMNVPRETQPFDKRLWAHCRQL 1141

Query: 1067 SIDEYTSTRTAEAVYGKLRAHDPDRTGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYD 888
            ++  Y S  T+    G  R  DPD   + I +  K+Q +KK EK   K    GQ +  + 
Sbjct: 1142 ALRTYLSKPTSNLQQGA-RRQDPDFPENAIALFNKSQWVKKLEKVGCKFKA-GQTISAFK 1199

Query: 887  IRQTLEDAPFALFLEDELIDAFPSNFLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWD 708
                L     AL+L  +     P N       +P+ F     ++W      Y+SD T++D
Sbjct: 1200 QSTVLLTTTMALYLRKKRESHQPDNIFVMCEKTPEQFNSFVLTKWDFTRPNYTSDYTQYD 1259

Query: 707  VGCDAGMLNFDVHVMRRCGLPNDYIESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIR 528
               D+  LNF++   +  GLP++ ++ Y   +  +++  G +  M+ SG+  T   N+  
Sbjct: 1260 QSQDSAFLNFELRKAKHFGLPDEVVDFYAFIKTHAKTFLGNLAVMRLSGEGPTSDANTEC 1319

Query: 527  RAVVTSLINAVCPEDTVAINGDDSAIDRFALSER 426
                 +L   +         GDD   D+ A  ER
Sbjct: 1320 NIAYDALRFQLDSTVNACYAGDDLVRDK-ACDER 1352


>gb|AKN20467.1| replicase [Strawberry mild yellow edge virus]
            gi|939107501|gb|ALJ53415.1| putative replicase
            [Strawberry mild yellow edge virus]
          Length = 1323

 Score =  105 bits (261), Expect = 7e-19
 Identities = 151/663 (22%), Positives = 252/663 (38%), Gaps = 18/663 (2%)
 Frame = -3

Query: 2378 GVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLI 2199
            G  GSGK+     ++ TL+   R+   I   T  LRA    ++  P+     F T    +
Sbjct: 605  GAGGSGKSQRLQDWMRTLKKNSRECTVILP-TAELRADWVNKV--PKQSLDTFKTWEKGL 661

Query: 2198 TEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSP 2019
             +P    ++LD+ GK   G  + +    P +  +++ GD  Q +         +    S 
Sbjct: 662  VQPPNRVVILDDYGKLPAGYPEALCANYPNIELLILTGDSRQSVHNEHNKQAATASLESN 721

Query: 2018 LAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGV 1839
            +         Y   +HR  + LA+ LGV+        VT +     G PV        G 
Sbjct: 722  VDFWTQYCRFYVNATHRNVKRLANALGVYGERDEPLKVTCSSHVYEGWPVLAPGLLKAGN 781

Query: 1838 LAGAGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTRSRTGVFLHMEPLNPL 1659
            LA  GRRA+TY G QG    + +++           R  Y AL+R+          +N +
Sbjct: 782  LAECGRRAFTYAGCQGLTTPK-VQILLDNDTPLCSQRVMYTALSRA----------VNEI 830

Query: 1658 ANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIGATI 1479
                T P+G D                    +W            C P L  F  +   I
Sbjct: 831  HFVNTGPSGDD--------------------FWTKL--------DCTPFLKTFLELSREI 862

Query: 1478 --PTADFQLVANPATNHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETHWHAKEHREVAGR 1305
              P A  Q    PA + +     V + N V L P      ++F RE +  +KE+    G 
Sbjct: 863  EVPEAKCQ-ETTPAESTVKTHFPVENPNMV-LEPYVEKMAEKFDRELY--SKEY----GY 914

Query: 1304 GGATNQFKETAFVNPHVHARADTATYF-----LSVAKRLTSRTQQA-----------NLR 1173
              A         + PH  A+ DT  +      L++  +  + T+ A           N  
Sbjct: 915  SNAIQTEDPVIQLFPHQQAKDDTLMWATIDQRLAITTKSDNETEFALKKDIGDLLFINYH 974

Query: 1172 RMLACPRRDMCDEFDRLVPVAPKWTPAKHAEYTDRSIDEYTSTRTAEAVYGKLRAHDPDR 993
            R +  P+  +   FD+ +     W   K+       + +   ++   ++   +   DPD 
Sbjct: 975  RAMKLPKNPI--PFDKDL-----WQSCKN------EVQKTYLSKDVSSIVNGIARQDPDF 1021

Query: 992  TGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDAFPSN 813
              ++IK+ LK+Q +KK EK       PGQ +  +     +     A ++        PSN
Sbjct: 1022 PINEIKLFLKSQWVKKVEKLGMVVK-PGQTIASFAQAPVMLYGTMARYMRRMREIYQPSN 1080

Query: 812  FLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDYI 633
                   +P    +  ++ W  +   +S+D T +D   D  ML F+V   +   +P+D I
Sbjct: 1081 IFINCEKTPADLDEWAKANWNFDGLAHSNDFTAFDQSQDGAMLQFEVIKAKFHNVPSDII 1140

Query: 632  ESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAINGDDSA 453
             SY+E + +++   G +  M+ SG+  T+  N+            V P+      GDDSA
Sbjct: 1141 HSYVELKTNAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVDPDVAQVYAGDDSA 1200

Query: 452  IDR 444
             DR
Sbjct: 1201 QDR 1203


>ref|NP_620648.1| replicase [Shallot virus X] gi|548840|sp|Q04575.1|RDRP_SHVX RecName:
            Full=RNA replication protein; AltName: Full=194 kDa
            protein; Includes: RecName: Full=RNA-directed RNA
            polymerase; Includes: RecName: Full=Helicase
            gi|295079|gb|AAA47787.1| replicase [Shallot virus X]
          Length = 1718

 Score =  104 bits (260), Expect = 9e-19
 Identities = 160/730 (21%), Positives = 276/730 (37%), Gaps = 13/730 (1%)
 Frame = -3

Query: 2576 AVTLAEEVIQYTADIDRAARLVADLKAHPHVLGSRGNPVVLQALDSILDLHKLSGAKIT- 2400
            A +L   +  +  D  RA   ++D+K       +    +VL  LD  L    ++ A+ T 
Sbjct: 853  ATSLHRGIYTHKIDNRRATAYMSDVK-------NNLTGLVLPKLDRDLLSSWVALAETTT 905

Query: 2399 --VPVRAYLGVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGF 2226
              V V A  G  G+GK+ A    L +  P +   + I   T +L    K +L  P++   
Sbjct: 906  REVAVLAIHGAGGAGKSRALQELLRS-SPELADSINIVVPTINLANDWKAKL--PQMDPR 962

Query: 2225 NFPTIPSLITEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSN 2046
               T             + D+ GK   G +D  +     V   ++ GD  Q        +
Sbjct: 963  RVMTFQKACERECKSVTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQS-----THH 1017

Query: 2045 TQSEYDLSPLAALAPQVTRYA----TVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIG 1878
             + E  +S L +   Q ++YA      +HR  R LA+ + VH    + G V         
Sbjct: 1018 QERESQISSLQSNIAQFSKYADYYLNATHRQPRRLANPIKVHAERQLGGAVLKANIVPDL 1077

Query: 1877 LPVCTASPRYMGVLAGAGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTRSR 1698
              V   + R   +L   GR A TY G QG      + +          D   Y A +R+ 
Sbjct: 1078 AMVLVPAFRSQSLLTDLGRHAMTYAGCQGLTLNH-LTIILDKDTPLCSDEVLYTAFSRAS 1136

Query: 1697 TGV-FLHMEPLNPLANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESC 1521
              + F++    NP   AK   T    L  ++  +RE  ++ AD                 
Sbjct: 1137 ESITFVNTHSDNPAFLAKLDAT--PYLKTLISWVREDEEAGAD----------------- 1177

Query: 1520 MPMLPWFAPIGATIPTADFQLVANPATNHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETH 1341
                P   P+   +PT            H+P     V ++ V L        D+  RE  
Sbjct: 1178 ---CPATEPLVKDVPTK----------THIP-----VANDKVQLEGKIEAMEDKDTREL- 1218

Query: 1340 WHAKEHREVAGRGGATNQFKETAFVNPHVHARADTATYFLSVAKRLTSRTQQANLRRMLA 1161
            W  +E   +        Q      + PH  A+ D A + +++ +R+   T + N +++  
Sbjct: 1219 WSGEEKTNLMQTQDPVVQ------LFPHQQAK-DEALFKITIGERIRMATPEQNAKQLRH 1271

Query: 1160 CPRRD--MCDEFDRLVPVAPKWTPAKHAEYT---DRSIDEYTSTRTAEAVYGKLRAHDPD 996
                   + + + + + V  +  P     +T     ++  Y S  T+    G  +  DPD
Sbjct: 1272 TLNAGDLLFEAYAQFMKVPKETQPFDKRLWTHCRQLALRTYLSKPTSNLQQGARQ--DPD 1329

Query: 995  RTGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDAFPS 816
               + I +  K+Q +KK EK   +    GQ +  +     L     AL+L  +     P 
Sbjct: 1330 FPDNAIALFNKSQWVKKLEKVGARFKA-GQTISAFKQEVVLLTTTMALYLRKKREQHQPD 1388

Query: 815  NFLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDY 636
            N       +P+ F     ++W  +   Y+SD T++D   DA  LNF++   R  G+P D 
Sbjct: 1389 NVFIMCERTPEQFNAFVMTKWDFDRPNYTSDYTQYDQSQDAAFLNFEIRKARHLGVPEDV 1448

Query: 635  IESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAINGDDS 456
            +  Y   +  +++  G +  M+ S +  T+  N+       +L   +  +   +  GDD 
Sbjct: 1449 LSFYKFIKTHAKTFLGNLAIMRLSAEGPTFDANTECNIAYDALRFRLGDDVRASYAGDDL 1508

Query: 455  AIDRFALSER 426
              D+ A  ER
Sbjct: 1509 VRDK-ACEER 1517


>gb|AHL25284.1| RNA-dependent RNA polymerase, partial [Rhizoctonia virus RS002]
          Length = 285

 Score =  103 bits (258), Expect = 2e-18
 Identities = 74/255 (29%), Positives = 112/255 (43%), Gaps = 1/255 (0%)
 Frame = -3

Query: 1073 DRSIDEYTSTRTAEAVYGKLRAHDPDRTGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHE 894
            +R +  + S+RT   +   ++   PD     +K+ LK+Q +KK  K H   A  GQ+V +
Sbjct: 27   ERRLQSWVSSRTVAQLTASVKRAGPDWDPLFVKLFLKSQRVKKIGKAHAA-ATKGQIVTD 85

Query: 893  YDIRQTLEDAPFALFLEDELIDAFPSNFLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTR 714
                +   D  +AL+LE+ L+     N   + R +       Y   W    G  + D T 
Sbjct: 86   VSQAKLFRDQVWALYLEEVLLRRTRKNIYLHTRANFSDMQRWYTKYWVTGAGCTACDYTG 145

Query: 713  WDVGCDAGMLNFDVHVMRRCGLPNDYIESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNS 534
            WD G D        +VMR  G+P+  ++ +   R + RS  G M  MQ SGDRYTW  N+
Sbjct: 146  WDSGVDESFTLLYSNVMRAFGIPDSVVDRFCSDRNNLRSFLGPMPAMQASGDRYTWLANT 205

Query: 533  IRRAVVTSLINAVCPEDTVAINGDDSAI-DRFALSERFDDSPWEFKDQNGMRGEFSGFEL 357
            I    VT +   V P+     +GDD  +   +        S +  K       EF GF  
Sbjct: 206  IGNMAVTGVSFDVGPKTAACFSGDDMIMCGYYDYRSSAASSQFIPKVIQAQLTEFCGFMY 265

Query: 356  GGPKPEYSAGGILYR 312
            G  +   SA  +L+R
Sbjct: 266  GSTRLHVSATVLLHR 280


>gb|ALI93575.1| replicase [Strawberry mild yellow edge virus]
          Length = 1323

 Score =  103 bits (257), Expect = 2e-18
 Identities = 150/663 (22%), Positives = 252/663 (38%), Gaps = 18/663 (2%)
 Frame = -3

Query: 2378 GVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLI 2199
            G  GSGK+     ++ TL+   R+   I   T  LRA    ++  P+     F T    +
Sbjct: 605  GAGGSGKSQRLQDWMRTLKKNSRECTVILP-TAELRADWVNKV--PKQSLDTFKTWEKGL 661

Query: 2198 TEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSP 2019
             +P    ++LD+ GK   G  + +    P +  +++ GD  Q +         +    S 
Sbjct: 662  VQPPNRVVILDDYGKLPAGYPEALCANYPNIELLILTGDSRQSVHNEHNKQAATASLESN 721

Query: 2018 LAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGV 1839
            +         Y   +HR  + LA+ LGV+        VT +     G PV        G 
Sbjct: 722  VDFWTQYCRFYVNATHRNVKRLANALGVYGERDEPLKVTCSSHVYEGWPVLAPGLLKAGN 781

Query: 1838 LAGAGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTRSRTGVFLHMEPLNPL 1659
            LA  GRRA+TY G QG    + +++           R  Y AL+R+          +N +
Sbjct: 782  LAECGRRAFTYAGCQGLTTPK-VQILLDNDTPLCSQRVMYTALSRA----------VNEI 830

Query: 1658 ANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIGATI 1479
                T P+G D                    +W            C P L  F  +   I
Sbjct: 831  HFVNTGPSGDD--------------------FWTKL--------DCTPFLKTFLELSREI 862

Query: 1478 --PTADFQLVANPATNHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETHWHAKEHREVAGR 1305
              P A  Q    PA + +     V + N V L P      ++F RE +  +KE+    G 
Sbjct: 863  EVPEAKCQ-ETTPAESTVKTHFPVENPNMV-LEPYVEKMAEKFDRELY--SKEY----GY 914

Query: 1304 GGATNQFKETAFVNPHVHARADTATYF-----LSVAKRLTSRTQQA-----------NLR 1173
              A         + PH  A+ +T  +      L++  +  + T+ A           N  
Sbjct: 915  SNAIQTEDPVIQLFPHQQAKDETLMWATIDQRLAITTKSDNETEFALKKDIGDLLFINYH 974

Query: 1172 RMLACPRRDMCDEFDRLVPVAPKWTPAKHAEYTDRSIDEYTSTRTAEAVYGKLRAHDPDR 993
            R +  P+  +   FD+ +     W   K+       + +   ++   ++   +   DPD 
Sbjct: 975  RAMKLPKNPI--PFDKDL-----WQSCKN------EVQKTYLSKDVSSIVNGIARQDPDF 1021

Query: 992  TGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDAFPSN 813
              ++IK+ LK+Q +KK EK       PGQ +  +     +     A ++        PSN
Sbjct: 1022 PINEIKLFLKSQWVKKVEKLGMVVK-PGQTIASFAQAPVMLYGTMARYMRRMREIYQPSN 1080

Query: 812  FLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDYI 633
                   +P    +  ++ W  +   +S+D T +D   D  ML F+V   +   +P+D I
Sbjct: 1081 IFINCEKTPADLDEWAKANWNFDGLAHSNDFTAFDQSQDGAMLQFEVIKAKFHNVPSDII 1140

Query: 632  ESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAINGDDSA 453
             SY+E + +++   G +  M+ SG+  T+  N+            V P+      GDDSA
Sbjct: 1141 HSYVELKTNAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVDPDVAQVYAGDDSA 1200

Query: 452  IDR 444
             DR
Sbjct: 1201 QDR 1203


>ref|NP_044571.1| replicase [Garlic virus X] gi|1888529|gb|AAC58809.1| replicase
            [Garlic virus X]
          Length = 1543

 Score =  103 bits (257), Expect = 2e-18
 Identities = 146/657 (22%), Positives = 244/657 (37%), Gaps = 6/657 (0%)
 Frame = -3

Query: 2378 GVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLI 2199
            G  G+GK+ A    L +       QV I   T +L    K +L  P++      T     
Sbjct: 748  GAGGAGKSRALQEILRS-NSIDTNQVNIIVPTINLAVDWKKKL--PKIDPRRVMTFEKAC 804

Query: 2198 TEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSP 2019
                   +++D+ GK   G +D  +     V  V++ GD  Q +      ++Q     S 
Sbjct: 805  EREGKSVVIMDDYGKLPAGYIDAYLAIKFNVEIVILTGDQRQSVFHNDRKDSQIALLTSN 864

Query: 2018 LAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGV 1839
             A        Y   +HR  R LA+ + VH    V G + H+            + R   +
Sbjct: 865  TAHFKRYCDYYLNATHRQPRRLANPIRVHAEREVGGAIKHSTLIPTHAMTLVPAFRSQSL 924

Query: 1838 LAGAGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTR-SRTGVFLHMEPLNP 1662
            L   GR+A TY G QG      + +          D   Y AL+R S T  F++    N 
Sbjct: 925  LTDLGRQAMTYAGCQGLTLPH-LTIVLDKDTPLCSDEVLYTALSRASETITFVNTYSNNK 983

Query: 1661 LANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIGAT 1482
                K   T    L  ++ G+RE  Q                              +G  
Sbjct: 984  DFLDKLDST--PYLKTLISGVREDEQ------------------------------VGWE 1011

Query: 1481 IPTADFQLVANPATNHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETHWHAKEHREVAGRG 1302
             P  + ++   P   H+P     V +N V L        D+  RE  W  +E   +    
Sbjct: 1012 NPPPEPEVRDAPTKTHIP-----VANNNVQLESKIETMEDKDTREL-WSGEEKTNLMQTQ 1065

Query: 1301 GATNQFKETAFVNPHVHARADTATYFLSVAKRLTSRTQQANLRRMLACPRRD--MCDEFD 1128
                Q      + PH  A+ D A + +++ +R+   + + N + +         + + + 
Sbjct: 1066 DPVIQ------LFPHQQAK-DEALFKITINERIKLASPETNCKALKETLNTGNLLFEAYA 1118

Query: 1127 RLVPVAPKWTPAKH---AEYTDRSIDEYTSTRTAEAVYGKLRAHDPDRTGSDIKITLKNQ 957
              + V  +  P      A     ++  Y S  T     G ++  DPD   + I +  K+Q
Sbjct: 1119 DFMNVPRETQPFDKRLWAHCRQLALRTYLSKPTTNLQQGAMQ--DPDFPENAIALFNKSQ 1176

Query: 956  VIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDAFPSNFLFYRRMSPQGF 777
             +KK EK   K    GQ +  +     L     AL+L  +     P N       +P+ F
Sbjct: 1177 WVKKLEKVGCKFKA-GQTISAFKQSTVLLTTTMALYLRKKRESHQPDNVFVMCEKTPEQF 1235

Query: 776  IDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDYIESYMERRLSSRS 597
                 +RW      Y+SD T++D   D+  LNF++   +  GLP++ ++ Y   +  +++
Sbjct: 1236 NSFVLTRWDFTRPNYTSDYTQYDQSQDSAFLNFELRKAKHLGLPDEVVDFYAFIKTHAKT 1295

Query: 596  QHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAINGDDSAIDRFALSER 426
              G +  M+ SG+  T+  N+       +L   +      +  GDD   DR A SER
Sbjct: 1296 FLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDSTVNASYAGDDLVRDR-ARSER 1351


>ref|NP_783203.1| RNA-dependent RNA polymerase [Oyster mushroom spherical virus]
            gi|28139759|gb|AAO26217.1| RNA-dependent RNA polymerase
            [Oyster mushroom spherical virus]
          Length = 1581

 Score =  102 bits (255), Expect = 4e-18
 Identities = 146/615 (23%), Positives = 247/615 (40%), Gaps = 57/615 (9%)
 Frame = -3

Query: 2207 SLITEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNTQSEY- 2031
            ++  +P V  +V DEA K  G  LDL +  +P V  V++ GDP Q  A  PV++ +S   
Sbjct: 800  AMFAQPQV--VVFDEAQKLPGHYLDLYLAYHPDVELVILLGDPFQSGA--PVTDQRSLLF 855

Query: 2030 -DLSPLAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLPVCTASP 1854
             ++SP   LA   T Y T S R+   +    G+   +S   +V         +PV  ++ 
Sbjct: 856  PEMSPGRTLARHATFYLTDSWRVNPTVGQAWGIPVLHSTRSNVYWIRGINPDMPVIVSTV 915

Query: 1853 RYMGVLAGAGRRAYTYEGVQGEDFREDMEVDAT-GLESAILDRTAYVALTRSRTGVFLHM 1677
                     G +A+T+    G DF    ++  T  L SA+ D   Y A TRSR  + + +
Sbjct: 916  TAQNARRQYGEQAFTFSSCGGLDFPGYYQIVLTRELLSAVPDDAIYTAFTRSRHDIAV-L 974

Query: 1676 EPLNPLANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPMLPWFA 1497
              L+P    +T    S LLNA+  G+         P     R      +   +P+L  F+
Sbjct: 975  NALSP-QEFRTACNNSRLLNALFNGV---------PLNGTYRDVIGDRIPG-VPLLGGFS 1023

Query: 1496 PIGATIPTADFQLVANPATNHMPMDGTV-----------VDSNGVDLAPSAAPPIDE--- 1359
             +  T  T    ++ N  + +  ++  +           V+S+   +    APP DE   
Sbjct: 1024 LVHGTRLTTVADVLGNDGSKYDNLEPIMKASMLAPPPERVESDVSPVPLKHAPPNDEWVP 1083

Query: 1358 -----------------FVRETHWHAKEHREVAGRGGATNQFKETAFVNP-----HVHAR 1245
                             FVRE         ++    G+  + ++ + V+       +H  
Sbjct: 1084 TYFGRAPHLKNDLNNTGFVRENVEFLSPDGQMGRMFGSDRKPEDASRVDGLNDFFPLHQS 1143

Query: 1244 ADTATYFLSVAKRLTSRTQQANLRRMLACPRRD--MCDEFDRL--VPVAPKWTPAKHAEY 1077
            +D A +  +V KRL   T+Q N + +         +CD F +   +P    W      E 
Sbjct: 1144 SDPALWGPTVPKRLRFGTEQGNRKELADSSFLGPMLCDAFRKSHNLPFDIPW----DQEL 1199

Query: 1076 TDRSIDEYTSTR---TAEAVYGKLRAHDPD-RTGSDIKITLKNQVIKKDEKRHKKEAI-- 915
             DR +++    R   +AEA+    R  DP  R    +   LK Q+I K +   K      
Sbjct: 1200 FDRCVEDCAQKRLSKSAEALNNLTRDQDPILRDNKKVLNFLKGQLINKLDAITKGSGAES 1259

Query: 914  -----PGQLVHEYDIRQTLEDAPFALFLEDELIDAFPSNFLFYRRMSPQG---FIDKYQS 759
                 P Q++  Y         P+  +L  +L +  P + + Y  M       +  ++  
Sbjct: 1260 FPTIKPAQMITTYTEEVNAAFGPYIRYLACKLREHSPDHVMHYGGMDLNDLGQWAREHVP 1319

Query: 758  RWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDYIESYMERRLSSRSQHGGMG 579
              R  +  +++D T +D  C    L F++ +MR   +P   IE ++E  L   S  G +G
Sbjct: 1320 SKRTKS--FTNDYTAYDKSCRGETLAFEICIMRLFNIPEWIIELHVELTLCVTSALGKLG 1377

Query: 578  TMQNSGDRYTWSLNS 534
             M+ SG   T+  N+
Sbjct: 1378 IMRTSGQWCTYLFNT 1392


>emb|CAE12227.1| putative replicase [Strawberry mild yellow edge virus]
          Length = 1323

 Score =  102 bits (254), Expect = 5e-18
 Identities = 157/667 (23%), Positives = 249/667 (37%), Gaps = 22/667 (3%)
 Frame = -3

Query: 2378 GVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLI 2199
            G  GSGK+     ++ TL+   R+   I   T  LRA    ++  P+     F T    +
Sbjct: 605  GAGGSGKSQRLQDWMRTLKKNSRECTVILP-TAELRADWVNKV--PKQSLDTFKTWEKGL 661

Query: 2198 TEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSP 2019
             +P    ++LD+ GK   G  + +    P +  +++ GD  Q +         +    S 
Sbjct: 662  VQPPNRVVILDDYGKLPAGYPEALCANYPNIELLILTGDSRQSVHNEHNKQAATASLESN 721

Query: 2018 LAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGV 1839
            +         Y   +HR  + LA+ LGV+        VT +     G PV        G 
Sbjct: 722  VEFWTRYCRFYVNATHRNVKRLANALGVYGERDEPLKVTCSSHVYEGWPVLAPGLLKTGN 781

Query: 1838 LAGAGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTRSRTGVFLHMEPLNPL 1659
            LA  GRRA+TY G QG      +++           R  Y AL+R+          +N +
Sbjct: 782  LAECGRRAFTYAGCQGLTTPR-VQILLDNDTPLCSQRVMYTALSRA----------VNEI 830

Query: 1658 ANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIGATI 1479
                T P+G D                    +W            C P L  F  +   I
Sbjct: 831  HFVNTGPSGDD--------------------FWTKL--------DCTPFLKTFLELSREI 862

Query: 1478 --PTADFQLVANPAT----NHMPMDGTVVDSNGVDLAPSAAPPIDEFVRETHWHAKEHRE 1317
              P A  Q  A PA      H P     V++  + L P      ++F RE +  +KE+  
Sbjct: 863  EVPEAKCQETA-PAELTVKTHFP-----VENPNMVLEPYVEKMAEKFDRELY--SKEY-- 912

Query: 1316 VAGRGGATNQFKETAFVNPHVHARADTATYF-----LSVAKRLTSRTQQA---------- 1182
              G   A         + PH  A+ DT  +      L++  R  +  + A          
Sbjct: 913  --GYSNAIQTEDPVIQLFPHQQAKDDTLMWATIDQRLAITTRPDNEAEFALKKDIGDLLF 970

Query: 1181 -NLRRMLACPRRDMCDEFDRLVPVAPKWTPAKHAEYTDRSIDEYTSTRTAEAVYGKLRAH 1005
             N  R +  P+  +   FDR +     W   K+          Y S   +  V G  R  
Sbjct: 971  INYHRAMKLPKNPI--PFDRDL-----WQSCKNEVQKT-----YLSKDISSIVNGVAR-Q 1017

Query: 1004 DPDRTGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDA 825
            DPD   ++IK+ LK+Q +KK +K       PGQ +  +     +     A ++       
Sbjct: 1018 DPDFPINEIKLFLKSQWVKKVDKLGMVVK-PGQTIASFAQAPVMLYGTMARYMRRMREIH 1076

Query: 824  FPSNFLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLP 645
             PSN       +P    +  ++ W      +S+D T +D   D  ML F+V   +   +P
Sbjct: 1077 QPSNIFINCEKTPADLDEWAKANWNFEGLAHSNDFTAFDQSQDGAMLQFEVIKAKFHNVP 1136

Query: 644  NDYIESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAING 465
            +D I SY+E + +++   G +  M+ SG+  T+  N+            V P+      G
Sbjct: 1137 SDIINSYVELKTNAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVDPDVAQVYAG 1196

Query: 464  DDSAIDR 444
            DDSA DR
Sbjct: 1197 DDSAQDR 1203


>gb|AGG13258.1| Replicase [Garlic virus X]
          Length = 1544

 Score =  102 bits (253), Expect = 6e-18
 Identities = 162/754 (21%), Positives = 280/754 (37%), Gaps = 22/754 (2%)
 Frame = -3

Query: 2621 ELATVLHKYKALQLP----------------AVTLAEEVIQYTADIDRAARLVADLKAHP 2490
            ++A V + ++A QLP                A  L      YT +  RA   ++D+K + 
Sbjct: 655  QIAPVFYNHQACQLPLYDGITNSVQSKFIEMAHALKRNCYNYTLEPRRATAFMSDVKNN- 713

Query: 2489 HVLGSRGNPVVLQALDSILDLHKLSGAKITVPVRAYLGVAGSGKTTATVAYLHTLEPAVR 2310
             + G     +    L S + L + +  K+ + V    G  G+GK+ A    L +      
Sbjct: 714  -LTGLVLPKLDRDLLTSWVALSENACRKVGLIV--IHGAGGAGKSRALQEILRS-NSIDT 769

Query: 2309 QQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLITEPSVGPIVLDEAGKYWGGMLDL 2130
             +V I   T +L    K ++  P++      T            +++D+ GK   G +D 
Sbjct: 770  NEVNIIVPTINLAVDWKKKM--PKIDPRRVMTFEKACEREGKSVVIMDDYGKLPAGYIDA 827

Query: 2129 IILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSPLAALAPQVTRYATVSHRMFRILA 1950
             +     V  V++ GD  Q +      ++Q     S  A        Y   +HR  R LA
Sbjct: 828  YLAIKFNVEIVILTGDQRQSVFHNDRKDSQIALLSSNTAHFKRYCDYYLNATHRQPRRLA 887

Query: 1949 DVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGVLAGAGRRAYTYEGVQGEDFREDM 1770
            + + VH    V G + H+            + R   +L   GR+A TY G QG      +
Sbjct: 888  NPIRVHAEREVGGAIKHSTLIPTHAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPH-L 946

Query: 1769 EVDATGLESAILDRTAYVALTR-SRTGVFLHMEPLNPLANAKTQPTGSDLLNAILFGMRE 1593
             +          D   Y AL+R S T  F++    N     K   T    L  ++ G+RE
Sbjct: 947  TIVLDKDTPLCSDEVLYTALSRASETITFVNTYSNNKDFLDKLDST--PYLKTLISGVRE 1004

Query: 1592 RNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIGATIPTADFQLVANPATNHMPMDGTV 1413
              Q                              +GA +P  + ++   P   H+P     
Sbjct: 1005 DEQ------------------------------VGAEMPPPEPEVRDAPTKTHIP----- 1029

Query: 1412 VDSNGVDLAPSAAPPIDEFVRETHWHAKEHREVAGRGGATNQFKETAFVNPHVHARADTA 1233
            V +N V L        D+  RE  W  +E   +        Q      + PH  A+ D A
Sbjct: 1030 VANNNVQLESKIETMEDKDTREL-WSGEEKTNLMQTQDPVIQ------LFPHQQAK-DEA 1081

Query: 1232 TYFLSVAKRLTSRTQQANLRRMLACPRRD--MCDEFDRLVPVAPKWTPAKH---AEYTDR 1068
             + +++ +R+     + N + +         + + +   + V  +  P      A     
Sbjct: 1082 LFKITINERIKLANPETNCKALKETLNTGNLLFEAYASFMNVPRETQPFDKRLWAHCRQL 1141

Query: 1067 SIDEYTSTRTAEAVYGKLRAHDPDRTGSDIKITLKNQVIKKDEKRHKKEAIPGQLVHEYD 888
            ++  Y S  T+    G  R  DPD   + I +  K+Q +KK EK   K    GQ +  + 
Sbjct: 1142 ALRTYLSKPTSNLQQGAQR-QDPDFPENAIALFNKSQWVKKLEKVGCKFKA-GQTISAFK 1199

Query: 887  IRQTLEDAPFALFLEDELIDAFPSNFLFYRRMSPQGFIDKYQSRWRVNNGVYSSDVTRWD 708
                L     AL+L  +     P         +P+ F     ++W  +   Y+SD T++D
Sbjct: 1200 QSTVLLTTTMALYLRKKRESHQPDYVFVMCEKTPEQFNSFVLTKWDFSRPNYTSDYTQYD 1259

Query: 707  VGCDAGMLNFDVHVMRRCGLPNDYIESYMERRLSSRSQHGGMGTMQNSGDRYTWSLNSIR 528
               D+  LNF++   +  GLP++ ++ Y   +  +++  G +  M+ SG+  T+  N+  
Sbjct: 1260 QSQDSAFLNFELRKAKHFGLPDEVVDFYAFIKTHAKTFLGNLAVMRLSGEGPTFDANTEC 1319

Query: 527  RAVVTSLINAVCPEDTVAINGDDSAIDRFALSER 426
                 +L   +         GDD   D+ A  ER
Sbjct: 1320 NIAYDALRFQLDSTVNACYAGDDLVRDK-ACDER 1352


>ref|NP_620642.1| replicase [Strawberry mild yellow edge virus]
            gi|139143|sp|P28897.1|RDRP_SMYEA RecName: Full=RNA
            replication protein; AltName: Full=150 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|222632|dbj|BAA02082.1| 150K protein
            [Strawberry mild yellow edge virus]
          Length = 1323

 Score =  102 bits (253), Expect = 6e-18
 Identities = 146/658 (22%), Positives = 246/658 (37%), Gaps = 13/658 (1%)
 Frame = -3

Query: 2378 GVAGSGKTTATVAYLHTLEPAVRQQVRIASHTESLRAQTKLQLDFPELKGFNFPTIPSLI 2199
            G  GSGK+     ++ +L+   R+   I    E    +T      P+     F T    +
Sbjct: 605  GAGGSGKSQRLQDWMRSLKKNSRECTVILPTAE---LRTDWVNKVPKQSLDTFKTWEKGL 661

Query: 2198 TEPSVGPIVLDEAGKYWGGMLDLIILANPLVSEVVVNGDPAQGMARFPVSNTQSEYDLSP 2019
             +P    ++LD+ GK   G  + +    P +  +++ GD  Q +         +    S 
Sbjct: 662  VQPPNRVVILDDYGKLPAGYPEALCANYPNIELLILTGDSRQSVHNEHNKQAATASLESN 721

Query: 2018 LAALAPQVTRYATVSHRMFRILADVLGVHTTNSVVGHVTHTIAAKIGLPVCTASPRYMGV 1839
            +         Y   +HR  + LA+ LGV+        VT +     G PV        G 
Sbjct: 722  IEFWTQYCRFYVNATHRNVKRLANALGVYGERDEPLKVTCSSHVYDGWPVLAPGLLKAGN 781

Query: 1838 LAGAGRRAYTYEGVQGEDFREDMEVDATGLESAILDRTAYVALTRSRTGVFLHMEPLNPL 1659
            LA  GRRA+TY G QG      +++           R  Y AL+R+          +N +
Sbjct: 782  LAECGRRAFTYAGCQGLT-APRVQILLDNDTPLCSQRVMYTALSRA----------VNEI 830

Query: 1658 ANAKTQPTGSDLLNAILFGMRERNQSFADPSYWLSRAAFARHLESCMPMLPWFAPIG--A 1485
                T P+G D                    +W            C P L  F  +    
Sbjct: 831  HFVNTGPSGDD--------------------FWTKL--------DCTPFLKTFLELSREI 862

Query: 1484 TIPTADFQLVANPATNHMPMDGTV-----VDSNGVDLAPSAAPPIDEFVRETHWHAKEHR 1320
             IP A  Q  A       P + TV     V++  + L P      ++F RE   ++KE+ 
Sbjct: 863  EIPEAKCQETA-------PAEATVKTHFPVENPNLVLEPYVEKMAEKFDREL--YSKEY- 912

Query: 1319 EVAGRGGATNQFKETAFVNPHVHARADTATYFLSVAKRLTSRTQQANLRRMLACPRRDMC 1140
               G   A         + PH  A+ DT  +  ++ +RL   T+  N        ++D+ 
Sbjct: 913  ---GYSNAIQTEDPVIQLFPHQQAKDDTLMW-ATIDQRLAITTKSENETEFAL--KKDIG 966

Query: 1139 D----EFDRLVPVAPKWTPAKHA--EYTDRSIDEYTSTRTAEAVYGKLRAHDPDRTGSDI 978
            D     + R + +     P      +     + +   ++   ++   +   DPD   ++I
Sbjct: 967  DLLFINYHRAMKLPKNPIPFDKDLWQSCKNEVQKTYLSKDVGSIVNGVARQDPDFPINEI 1026

Query: 977  KITLKNQVIKKDEKRHKKEAIPGQLVHEYDIRQTLEDAPFALFLEDELIDAFPSNFLFYR 798
            K+ LK+Q +KK EK       PGQ +  +     +     A ++        PSN     
Sbjct: 1027 KLFLKSQWVKKVEKL-GMVVKPGQTIASFAQAPVMLYGTMARYMRRMREVYQPSNIFINC 1085

Query: 797  RMSPQGFIDKYQSRWRVNNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGLPNDYIESYME 618
              +P    +  ++ W      +S+D T +D   D  ML F+V   +   +P+D I SY+E
Sbjct: 1086 EKTPADLDEWAKANWNFEGLAHSNDFTAFDQSQDGAMLQFEVIKAKFHNIPSDIINSYVE 1145

Query: 617  RRLSSRSQHGGMGTMQNSGDRYTWSLNSIRRAVVTSLINAVCPEDTVAINGDDSAIDR 444
             + +++   G +  M+ SG+  T+  N+            V P+      GDDSA DR
Sbjct: 1146 LKTNAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVEPDVAQVYAGDDSAQDR 1203