BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00013239
         (586 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub...   154   2e-35
emb|CDP10074.1| unnamed protein product [Coffea canephora]            149   8e-34
ref|XP_010105335.1| DNA-directed RNA polymerase I subunit rpa1 [...   149   1e-33
ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I sub...   147   3e-33
ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I sub...   147   3e-33
gb|KCW48062.1| hypothetical protein EUGRSUZ_K01811 [Eucalyptus g...   147   3e-33
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   147   4e-33
ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I sub...   146   7e-33
ref|XP_008392178.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   145   2e-32
ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I sub...   144   3e-32
ref|XP_011469851.1| PREDICTED: DNA-directed RNA polymerase I sub...   143   7e-32
gb|KHG00372.1| DNA-directed RNA polymerase I subunit rpa[2] [Gos...   141   2e-31
ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I sub...   140   4e-31
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   139   8e-31
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...   139   8e-31
ref|XP_009345035.1| PREDICTED: DNA-directed RNA polymerase I sub...   138   2e-30
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...   138   2e-30
gb|KDO57201.1| hypothetical protein CISIN_1g0468252mg, partial [...   137   3e-30
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...   137   3e-30
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              135   2e-29

>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
           vinifera]
          Length = 1691

 Score =  154 bits (390), Expect = 2e-35
 Identities = 88/199 (44%), Positives = 114/199 (57%), Gaps = 14/199 (7%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDGS 407
           L++LLQ+TCF C+HF+     V+K +SQLELI +GDVVGAK LDS SPS+ SY +D DGS
Sbjct: 96  LHNLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGS 155

Query: 406 --MCHSAES-----------KQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKN 266
              C S  +           KQQ WTSL   E MSV+   L                   
Sbjct: 156 HVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFL------------------- 196

Query: 265 KLKTTKCMNCSAKNPKISRPTFGWLHKS-MSGAHIRANVISGSNIEGPFADGHQEASVSD 89
           KLK   C NC AK+P++++PTFGW H + +S A  RANVI GS +E P +   +E S S+
Sbjct: 197 KLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPLSRVAEEKSSSE 256

Query: 88  EEIINDSPPWDNDVDKDNS 32
            E +ND  PW + VD D +
Sbjct: 257 VENVNDMFPWGDGVDTDET 275


>emb|CDP10074.1| unnamed protein product [Coffea canephora]
          Length = 1680

 Score =  149 bits (377), Expect = 8e-34
 Identities = 82/187 (43%), Positives = 108/187 (57%), Gaps = 8/187 (4%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDGS 407
           LY+LLQRTCF C+HFR+  ++V+KC+ QLE I +GDV+GAK LD+ S +    ++D +GS
Sbjct: 97  LYNLLQRTCFYCFHFRSSTEEVDKCVLQLERIAKGDVIGAKRLDAASSADLDNSEDSEGS 156

Query: 406 ------MCHSAES--KQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNKLKTT 251
                 + H AE   KQ  W S  FTE MSVL   LKP                   K +
Sbjct: 157 HVSCGNVYHGAEEHMKQPSWDSFQFTEAMSVLNMFLKP-------------------KLS 197

Query: 250 KCMNCSAKNPKISRPTFGWLHKSMSGAHIRANVISGSNIEGPFADGHQEASVSDEEIIND 71
           KC  C AKNPKI +PTFGW H  +S A  RAN+I G  ++G  + G +E S S+    ND
Sbjct: 198 KCGKCEAKNPKIKKPTFGWFHMVVSNAETRANIIRGHRLDGFRSGGSEERSSSEVVNAND 257

Query: 70  SPPWDND 50
           S  W++D
Sbjct: 258 S-LWEDD 263


>ref|XP_010105335.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
           gi|587916721|gb|EXC04356.1| DNA-directed RNA polymerase
           I subunit rpa1 [Morus notabilis]
          Length = 1770

 Score =  149 bits (375), Expect = 1e-33
 Identities = 89/187 (47%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDD-- 413
           LY +L+RTCFSCYHFR    +V+KC+SQLELI++GDV  AK+L+S   S+ S+ KD    
Sbjct: 38  LYSILKRTCFSCYHFRRNPVEVKKCVSQLELILKGDVARAKDLNSRPSSESSHLKDYGYR 97

Query: 412 GSMCHSAE-SKQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNKLKTTKCMNC 236
           GS   SA+ S Q   TSL  +E MSVL   LKPN                    TKC NC
Sbjct: 98  GSKDRSAKPSTQPKLTSLQLSEAMSVLNNFLKPNH-------------------TKCRNC 138

Query: 235 SAKNPKISRPTFGWLH-KSMSGAHIRANVISGSNIEGPFADGHQEASVSDEEIINDSPPW 59
            A    I++P FGWL+ + +SGA  RANVI  S +EGPF+DG    S+ +EEIIND    
Sbjct: 139 EAHRLTITQPVFGWLNMERISGARARANVIRNSKLEGPFSDGE---SLPEEEIINDVTSP 195

Query: 58  DNDVDKD 38
           D+D D D
Sbjct: 196 DSDADTD 202


>ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X2
           [Eucalyptus grandis]
          Length = 1669

 Score =  147 bits (372), Expect = 3e-33
 Identities = 83/185 (44%), Positives = 104/185 (56%), Gaps = 13/185 (7%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDGS 407
           LY+LL+RTCF C+HFR  R QV+ C+S+LELI +GDV GAKELDS   +  S  +  +G 
Sbjct: 95  LYNLLKRTCFFCFHFRESRSQVDACVSKLELIAKGDVAGAKELDSKWATNSSLREASNGG 154

Query: 406 --MCHSAES----------KQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNK 263
              C +  S          KQ  WTSL F E MSVL K LKP            +K+   
Sbjct: 155 DVSCSTVRSDLQHDSPVHQKQGEWTSLQFNEAMSVLNKFLKPT-----------YKE--- 200

Query: 262 LKTTKCMNCSAKNPKISRPTFGWLHKS-MSGAHIRANVISGSNIEGPFADGHQEASVSDE 86
                C NC AKNPKIS+PTFGW H S M+GA  R N+I G+ ++GPF DG  E    + 
Sbjct: 201 -----CKNCKAKNPKISKPTFGWFHMSGMTGAQTRGNIIRGNKMDGPFLDGDGEMESLEG 255

Query: 85  EIIND 71
             + D
Sbjct: 256 AFLQD 260


>ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
           [Eucalyptus grandis]
          Length = 1669

 Score =  147 bits (372), Expect = 3e-33
 Identities = 83/185 (44%), Positives = 104/185 (56%), Gaps = 13/185 (7%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDGS 407
           LY+LL+RTCF C+HFR  R QV+ C+S+LELI +GDV GAKELDS   +  S  +  +G 
Sbjct: 95  LYNLLKRTCFFCFHFRESRSQVDACVSKLELIAKGDVAGAKELDSKWATNSSLREASNGG 154

Query: 406 --MCHSAES----------KQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNK 263
              C +  S          KQ  WTSL F E MSVL K LKP            +K+   
Sbjct: 155 DVSCSTVRSDLQHDSPVHQKQGEWTSLQFNEAMSVLNKFLKPT-----------YKE--- 200

Query: 262 LKTTKCMNCSAKNPKISRPTFGWLHKS-MSGAHIRANVISGSNIEGPFADGHQEASVSDE 86
                C NC AKNPKIS+PTFGW H S M+GA  R N+I G+ ++GPF DG  E    + 
Sbjct: 201 -----CKNCKAKNPKISKPTFGWFHMSGMTGAQTRGNIIRGNKMDGPFLDGDGEMESLEG 255

Query: 85  EIIND 71
             + D
Sbjct: 256 AFLQD 260


>gb|KCW48062.1| hypothetical protein EUGRSUZ_K01811 [Eucalyptus grandis]
          Length = 1606

 Score =  147 bits (372), Expect = 3e-33
 Identities = 83/185 (44%), Positives = 104/185 (56%), Gaps = 13/185 (7%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDGS 407
           LY+LL+RTCF C+HFR  R QV+ C+S+LELI +GDV GAKELDS   +  S  +  +G 
Sbjct: 42  LYNLLKRTCFFCFHFRESRSQVDACVSKLELIAKGDVAGAKELDSKWATNSSLREASNGG 101

Query: 406 --MCHSAES----------KQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNK 263
              C +  S          KQ  WTSL F E MSVL K LKP            +K+   
Sbjct: 102 DVSCSTVRSDLQHDSPVHQKQGEWTSLQFNEAMSVLNKFLKPT-----------YKE--- 147

Query: 262 LKTTKCMNCSAKNPKISRPTFGWLHKS-MSGAHIRANVISGSNIEGPFADGHQEASVSDE 86
                C NC AKNPKIS+PTFGW H S M+GA  R N+I G+ ++GPF DG  E    + 
Sbjct: 148 -----CKNCKAKNPKISKPTFGWFHMSGMTGAQTRGNIIRGNKMDGPFLDGDGEMESLEG 202

Query: 85  EIIND 71
             + D
Sbjct: 203 AFLQD 207


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
           communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
           polymerase I largest subunit, putative [Ricinus
           communis]
          Length = 1686

 Score =  147 bits (371), Expect = 4e-33
 Identities = 82/166 (49%), Positives = 99/166 (59%), Gaps = 13/166 (7%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDD-- 413
           L+ LLQRTCF C+HFR  R QVEKCI QLELI++GD+VGAK L+S SPS+  Y ++ D  
Sbjct: 99  LHKLLQRTCFLCFHFRMQRGQVEKCIKQLELIVKGDIVGAKRLESVSPSEALYPEESDLS 158

Query: 412 ---------GSMCHSAE-SKQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNK 263
                    G  C+  E ++QQ WTSL FTE MSVL   LKP                  
Sbjct: 159 HESCPTIHSGVQCNDGEHTRQQGWTSLQFTEAMSVLNNFLKP------------------ 200

Query: 262 LKTTKCMNCSAKNPKISRPTFGWLHKS-MSGAHIRANVISGSNIEG 128
            K  KC NC + NP I++PTFGW H S MS A IRANVI+G  + G
Sbjct: 201 -KFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVITGHQLGG 245


>ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Populus
           euphratica]
          Length = 1699

 Score =  146 bits (369), Expect = 7e-33
 Identities = 87/187 (46%), Positives = 105/187 (56%), Gaps = 13/187 (6%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDG- 410
           L+ LLQRTCF C+HFRA   QVEK +SQLELI++GDVVGAK LDS SP + S  +D DG 
Sbjct: 94  LHKLLQRTCFFCFHFRADSNQVEKFVSQLELIIKGDVVGAKRLDSFSPIEASLPEDSDGS 153

Query: 409 ----SMCHSA-------ESKQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNK 263
               S  HS        +SKQ  WTSL  +E MS+L   L                   K
Sbjct: 154 SESCSTIHSGAPHPNNEQSKQSEWTSLQLSEAMSILNNFL-------------------K 194

Query: 262 LKTTKCMNCSAKNPKISRPTFGWLH-KSMSGAHIRANVISGSNIEGPFADGHQEASVSDE 86
           L++ KC NCSA NP I +PTFGW H   +S A IR+N+I    IEGPF    +E  + D 
Sbjct: 195 LESKKCKNCSASNPNIRKPTFGWFHWAGLSNAAIRSNLIKQQTIEGPFGGAFEE--LIDA 252

Query: 85  EIINDSP 65
           E    SP
Sbjct: 253 EDATKSP 259


>ref|XP_008392178.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
           subunit rpa1-like [Malus domestica]
          Length = 1682

 Score =  145 bits (365), Expect = 2e-32
 Identities = 89/193 (46%), Positives = 109/193 (56%), Gaps = 1/193 (0%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDGS 407
           L+ LLQRTCF CYHFR  +  VEK +SQL+LIM GDVVGAK LDSDSPS++    D++G 
Sbjct: 97  LFKLLQRTCFFCYHFRTDQTHVEKAVSQLKLIMEGDVVGAKMLDSDSPSEY---LDNEGD 153

Query: 406 MCHSAESKQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNKLKTTKCMNCSAK 227
                 +KQQ WTSL FTE+MSV  K L P   K                   C NC AK
Sbjct: 154 SHSDKHAKQQGWTSLQFTELMSVFDKAL-PKQGK------------------DCNNCKAK 194

Query: 226 NPKISRPTFGWLHKSMSGA-HIRANVISGSNIEGPFADGHQEASVSDEEIINDSPPWDND 50
           NPKI +PTFGW    MSGA + R NVI G N+ GP     Q+    +E + N      ND
Sbjct: 195 NPKIIKPTFGWF--QMSGAENARENVIRGCNLVGPLTG--QDEGDENENVDN------ND 244

Query: 49  VDKDNSDAFRALS 11
           ++K N +  +  S
Sbjct: 245 MEKHNGEGSKVPS 257


>ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Gossypium
           raimondii] gi|763751831|gb|KJB19219.1| hypothetical
           protein B456_003G089300 [Gossypium raimondii]
          Length = 1674

 Score =  144 bits (363), Expect = 3e-32
 Identities = 86/188 (45%), Positives = 108/188 (57%), Gaps = 7/188 (3%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDD-- 413
           L+ L+QRTCF CYHFRA R +VEKCISQL+LI +GD+VGAK LDSDS    S+ ++ +  
Sbjct: 96  LHTLIQRTCFFCYHFRAERTEVEKCISQLKLIGKGDIVGAKRLDSDSKDSSSHPENSEGC 155

Query: 412 ---GSMCHSAES-KQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNKLKTTKC 245
              GS  H +E+   + WTSL  TE MSVL K L                   K+K  +C
Sbjct: 156 QKLGSRLHESEAVNPKEWTSLQLTEAMSVLNKFL-------------------KVKYKRC 196

Query: 244 MNCSAKNPKISRPTFGWLHKS-MSGAHIRANVISGSNIEGPFADGHQEASVSDEEIINDS 68
            NC AKNP I++PTFGW H S MSG+ +R NVI G  +    AD       SD E  ND+
Sbjct: 197 KNCDAKNPAITKPTFGWFHTSGMSGSQMRENVIRGCKM----ADTFSGEVGSDIEDANDA 252

Query: 67  PPWDNDVD 44
              +  VD
Sbjct: 253 SSSEEGVD 260


>ref|XP_011469851.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Fragaria
           vesca subsp. vesca]
          Length = 1674

 Score =  143 bits (360), Expect = 7e-32
 Identities = 76/170 (44%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDG- 410
           LY LLQRTC  C+HFR  ++ VEKC+S+LEL+M+GDVVGAK LDSD+P+++SY  D+DG 
Sbjct: 100 LYKLLQRTCLGCFHFRTSKELVEKCVSKLELVMKGDVVGAKRLDSDTPNEYSYL-DEDGE 158

Query: 409 --SMCHSAESKQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNKLKTTKCMNC 236
             ++     SK + WTSL FTE MS+L+  L+                       KC NC
Sbjct: 159 GNNIDRDKHSKPERWTSLQFTEAMSILEDSLETQQ--------------------KCKNC 198

Query: 235 SAKNPKISRPTFGWLHKSMSGAHIRANVISGSNIEGPFADGHQEASVSDE 86
             KNPKI++PTFGWL  + +G + R NVI G  + GP +   +  S  D+
Sbjct: 199 KFKNPKITKPTFGWLQMTGAG-NARENVIRGCKLVGPLSVQDEGESCGDD 247


>gb|KHG00372.1| DNA-directed RNA polymerase I subunit rpa[2] [Gossypium arboreum]
          Length = 789

 Score =  141 bits (356), Expect = 2e-31
 Identities = 84/188 (44%), Positives = 108/188 (57%), Gaps = 7/188 (3%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDD-- 413
           L+ L+QRTCF CYHFRA R +VE+CISQL+LI +GD+VGAK LD+DS    S+ ++ +  
Sbjct: 96  LHTLVQRTCFFCYHFRAERTEVERCISQLKLIGKGDIVGAKRLDTDSKDSSSHPENSEGC 155

Query: 412 ---GSMCHSAES-KQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNKLKTTKC 245
              GS  H +E+   + WTSL  TE MSVL K L                   K+K  +C
Sbjct: 156 QKLGSRLHESEAVNPKEWTSLQLTEAMSVLNKFL-------------------KVKYKRC 196

Query: 244 MNCSAKNPKISRPTFGWLHKS-MSGAHIRANVISGSNIEGPFADGHQEASVSDEEIINDS 68
            NC AKNP I++PTFGW H S MSG+ +R NVI G  +    AD       SD E  ND+
Sbjct: 197 KNCDAKNPAITKPTFGWFHTSGMSGSQMRENVIRGCKM----ADTFSGEVGSDIEDANDA 252

Query: 67  PPWDNDVD 44
              +  VD
Sbjct: 253 SSSEEGVD 260


>ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha
           curcas]
          Length = 1741

 Score =  140 bits (354), Expect = 4e-31
 Identities = 83/195 (42%), Positives = 104/195 (53%), Gaps = 13/195 (6%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDGS 407
           L+ LLQRTCF C+HFR  R QV+KC+ QLELI++GD+VGAK LDS  PS+  Y ++ DGS
Sbjct: 96  LHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIVGAKRLDSVLPSETLYPEESDGS 155

Query: 406 -----------MCHSAE-SKQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNK 263
                       CH+ E  KQ+ WTSL F+E  SVL   L P                  
Sbjct: 156 HESCSTVHSGAQCHNGEHMKQKEWTSLQFSEATSVLNTFLMP------------------ 197

Query: 262 LKTTKCMNCSAKNPKISRPTFGWLHKS-MSGAHIRANVISGSNIEGPFADGHQEASVSDE 86
            K  KC NC A NP I++P FGW + S M+ A IRAN+I G  + GP      +     E
Sbjct: 198 -KFKKCKNCGAVNPNITKPMFGWFYTSGMTDASIRANIIRGRQLGGPLV-AEVDEMTDVE 255

Query: 85  EIINDSPPWDNDVDK 41
           E    S   D DV +
Sbjct: 256 ESAEPSGNQDTDVKR 270


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
           gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
           putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  139 bits (351), Expect = 8e-31
 Identities = 81/193 (41%), Positives = 108/193 (55%), Gaps = 7/193 (3%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYA-----K 422
           L+ LLQR CF CYHFRA + +VE+C+SQL+LI  GD+VGAK LDSDS    SY+      
Sbjct: 96  LHTLLQRICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGS 155

Query: 421 DDDGSMCHSAES-KQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNKLKTTKC 245
            + GS+ H++E+ K + WTSL   E MSVL   L                   KLK  KC
Sbjct: 156 QESGSIVHNSEAVKPKEWTSLQLMEAMSVLNNFL-------------------KLKYNKC 196

Query: 244 MNCSAKNPKISRPTFGWLH-KSMSGAHIRANVISGSNIEGPFADGHQEASVSDEEIINDS 68
            NC AKNP I++P FGWLH   M GA +R NVI G  +   F+D    + + D + ++ S
Sbjct: 197 KNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMVDTFSD-EAGSGLEDADDVSSS 255

Query: 67  PPWDNDVDKDNSD 29
               +  + D S+
Sbjct: 256 GNGVDIAEMDTSE 268


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
           gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
           putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  139 bits (351), Expect = 8e-31
 Identities = 81/193 (41%), Positives = 108/193 (55%), Gaps = 7/193 (3%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYA-----K 422
           L+ LLQR CF CYHFRA + +VE+C+SQL+LI  GD+VGAK LDSDS    SY+      
Sbjct: 96  LHTLLQRICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGS 155

Query: 421 DDDGSMCHSAES-KQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNKLKTTKC 245
            + GS+ H++E+ K + WTSL   E MSVL   L                   KLK  KC
Sbjct: 156 QESGSIVHNSEAVKPKEWTSLQLMEAMSVLNNFL-------------------KLKYNKC 196

Query: 244 MNCSAKNPKISRPTFGWLH-KSMSGAHIRANVISGSNIEGPFADGHQEASVSDEEIINDS 68
            NC AKNP I++P FGWLH   M GA +R NVI G  +   F+D    + + D + ++ S
Sbjct: 197 KNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMVDTFSD-EAGSGLEDADDVSSS 255

Query: 67  PPWDNDVDKDNSD 29
               +  + D S+
Sbjct: 256 GNGVDIAEMDTSE 268


>ref|XP_009345035.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
           [Pyrus x bretschneideri]
          Length = 1684

 Score =  138 bits (348), Expect = 2e-30
 Identities = 88/193 (45%), Positives = 107/193 (55%), Gaps = 1/193 (0%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDGS 407
           L+ LLQRTCF CYHFR  +  VEK +SQL+LIM GDVVGAK LDSDSPS+  Y   ++G 
Sbjct: 97  LFKLLQRTCFFCYHFRTDQTHVEKAVSQLKLIMEGDVVGAKMLDSDSPSE--YLDCNEGD 154

Query: 406 MCHSAESKQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKNKLKTTKCMNCSAK 227
                 +KQQ WTSL FTE+MSV  K L P   K                   C NC AK
Sbjct: 155 SHSDKHAKQQGWTSLQFTELMSVFDKAL-PKQGK------------------DCNNCKAK 195

Query: 226 NPKISRPTFGWLHKSMSGA-HIRANVISGSNIEGPFADGHQEASVSDEEIINDSPPWDND 50
           NPKI +PTFG     MSGA + R NVI G N+ GP     Q+    +E + N      ND
Sbjct: 196 NPKIIKPTFGCF--QMSGAENARENVIRGCNLVGPLTG--QDEGDENENVDN------ND 245

Query: 49  VDKDNSDAFRALS 11
           ++K N +  +  S
Sbjct: 246 MEKHNGEGSKVPS 258


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
           gi|557523327|gb|ESR34694.1| hypothetical protein
           CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score =  138 bits (347), Expect = 2e-30
 Identities = 79/207 (38%), Positives = 108/207 (52%), Gaps = 14/207 (6%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDD-- 413
           LY LL+R CF C+HF+A R++VEKC+ +LELI++GD++ AK LD D PS+ S  +D D  
Sbjct: 96  LYTLLKRICFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVS 155

Query: 412 -----------GSMCHSAESKQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKN 266
                      G+  +    K Q WTSL F E    L + L                   
Sbjct: 156 NKSSCSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFL------------------- 196

Query: 265 KLKTTKCMNCSAKNPKISRPTFGWLH-KSMSGAHIRANVISGSNIEGPFADGHQEASVSD 89
           K++TTKC NC AKNP+IS+PTFGW+H   M  A IRAN+I G N+   F+ G +E  +  
Sbjct: 197 KIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGT 256

Query: 88  EEIINDSPPWDNDVDKDNSDAFRALSP 8
                      +DVD   + +F    P
Sbjct: 257 ----------SSDVDAPETHSFNGAFP 273


>gb|KDO57201.1| hypothetical protein CISIN_1g0468252mg, partial [Citrus sinensis]
          Length = 358

 Score =  137 bits (346), Expect = 3e-30
 Identities = 79/207 (38%), Positives = 108/207 (52%), Gaps = 14/207 (6%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDD-- 413
           LY LL+R CF C+HF+A R++VEKC+ +LELI++GD++ AK LD D PS+ S  +D D  
Sbjct: 33  LYTLLKRICFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVS 92

Query: 412 -----------GSMCHSAESKQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKN 266
                      G+  +    K Q WTSL F E    L + L                   
Sbjct: 93  NKSSCSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFL------------------- 133

Query: 265 KLKTTKCMNCSAKNPKISRPTFGWLH-KSMSGAHIRANVISGSNIEGPFADGHQEASVSD 89
           K++TTKC NC AKNP+IS+PTFGW+H   M  A IRAN+I G N+   F+ G +E  +  
Sbjct: 134 KIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGA 193

Query: 88  EEIINDSPPWDNDVDKDNSDAFRALSP 8
                      +DVD   + +F    P
Sbjct: 194 ----------SSDVDAPETHSFNGTFP 210


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
           sinensis]
          Length = 1715

 Score =  137 bits (346), Expect = 3e-30
 Identities = 79/207 (38%), Positives = 108/207 (52%), Gaps = 14/207 (6%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDD-- 413
           LY LL+R CF C+HF+A R++VEKC+ +LELI++GD++ AK LD D PS+ S  +D D  
Sbjct: 96  LYTLLKRICFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVS 155

Query: 412 -----------GSMCHSAESKQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKN 266
                      G+  +    K Q WTSL F E    L + L                   
Sbjct: 156 NKSSCSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFL------------------- 196

Query: 265 KLKTTKCMNCSAKNPKISRPTFGWLH-KSMSGAHIRANVISGSNIEGPFADGHQEASVSD 89
           K++TTKC NC AKNP+IS+PTFGW+H   M  A IRAN+I G N+   F+ G +E  +  
Sbjct: 197 KIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGA 256

Query: 88  EEIINDSPPWDNDVDKDNSDAFRALSP 8
                      +DVD   + +F    P
Sbjct: 257 ----------SSDVDAPETHSFNGTFP 273


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  135 bits (339), Expect = 2e-29
 Identities = 77/168 (45%), Positives = 97/168 (57%), Gaps = 14/168 (8%)
 Frame = -1

Query: 586 LYDLLQRTCFSCYHFRAGRKQVEKCISQLELIMRGDVVGAKELDSDSPSQFSYAKDDDGS 407
           L++LLQ+TCF C+HF+     V+K +SQLELI +GDVVGAK LDS SPS+ SY +D DGS
Sbjct: 96  LHNLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGS 155

Query: 406 --MCHSAES-----------KQQVWTSLHFTEVMSVLKKILKPNSAKRDSVKQNPFKQKN 266
              C S  +           KQQ WTSL   E MSV+   L                   
Sbjct: 156 HVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFL------------------- 196

Query: 265 KLKTTKCMNCSAKNPKISRPTFGWLHKS-MSGAHIRANVISGSNIEGP 125
           KLK   C NC AK+P++++PTFGW H + +S A  RANVI GS +E P
Sbjct: 197 KLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERP 244