BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00007530
         (2094 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010103268.1| RNA polymerase sigma factor rpoD [Morus nota...   209   9e-57
ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD,...   219   1e-53
emb|CBI24961.3| unnamed protein product [Vitis vinifera]              219   1e-53
ref|XP_008231483.1| PREDICTED: RNA polymerase sigma factor sigD,...   207   1e-53
ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prun...   218   2e-53
ref|XP_009354359.1| PREDICTED: RNA polymerase sigma factor sigD,...   216   4e-53
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,...   209   3e-52
gb|KDO83322.1| hypothetical protein CISIN_1g046578mg [Citrus sin...   206   9e-50
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr...   204   2e-49
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,...   204   3e-49
ref|XP_014500709.1| PREDICTED: RNA polymerase sigma factor sigD,...   196   7e-47
ref|XP_007148895.1| hypothetical protein PHAVU_005G023100g [Phas...   194   2e-46
ref|XP_007148893.1| hypothetical protein PHAVU_005G023100g [Phas...   194   2e-46
ref|XP_007148892.1| hypothetical protein PHAVU_005G023100g [Phas...   194   2e-46
ref|XP_011089039.1| PREDICTED: RNA polymerase sigma factor sigD,...   191   2e-45
ref|XP_003599429.2| RNA polymerase sigma factor [Medicago trunca...   191   3e-45
ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD,...   190   4e-45
ref|XP_010557806.1| PREDICTED: RNA polymerase sigma factor sigD,...   190   5e-45
ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arab...   189   1e-44
gb|KFK25599.1| hypothetical protein AALP_AA8G135300 [Arabis alpina]   188   1e-44

>ref|XP_010103268.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587907279|gb|EXB95293.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 422

 Score =  159 bits (403), Expect(2) = 9e-57
 Identities = 76/105 (72%), Positives = 93/105 (88%)
 Frame = -2

Query: 1586 ENKSFSSGSVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQLAKAIGME 1407
            E+  FS G +K GYLS REE +CCL LKEGA+LEATR+R+T++++HEPTSK+LAKA+GME
Sbjct: 109  EDMRFSIGPMKLGYLSPREEAECCLILKEGAKLEATRLRMTNSEDHEPTSKELAKAMGME 168

Query: 1406 MRSVDKMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            MRS+DKMLCD+R+SQERI RSYRRLVVS+A GYQG+GLS  DLIQ
Sbjct: 169  MRSIDKMLCDKRESQERISRSYRRLVVSVAAGYQGKGLSFPDLIQ 213



 Score = 91.3 bits (225), Expect(2) = 9e-57
 Identities = 42/48 (87%), Positives = 45/48 (93%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGS+GLLRGA KFDP RG+KLSTYVYWWIRQAIIRAIE KSR+VRLP
Sbjct: 213  QEGSVGLLRGAQKFDPQRGNKLSTYVYWWIRQAIIRAIENKSRVVRLP 260



 Score =  209 bits (531), Expect = 1e-50
 Identities = 106/157 (67%), Positives = 134/157 (85%), Gaps = 1/157 (0%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           GNMC +VAK+ EA N L++RLRR PT +EIA+ V +HVS ++LVSE+ R PISLDR +T+
Sbjct: 261 GNMCGIVAKVTEANNVLNKRLRRFPTYDEIAQVVGVHVSTVRLVSERIRPPISLDRAITE 320

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKS-LSDREAHVLRLHFGLNGKSPQT 185
           +GCM LQEII GP+E  PEKMV K+LMKQE++KLLK+ LSDREA+VLRLHFGL+G  P +
Sbjct: 321 RGCMTLQEIIPGPEEISPEKMVRKQLMKQEIEKLLKTVLSDREANVLRLHFGLSGDIPLS 380

Query: 184 FEEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRL 74
            EEIGR+LKLSRER+RQINGIALSKL+ T+IV++LR+
Sbjct: 381 CEEIGRLLKLSRERIRQINGIALSKLQQTNIVNDLRI 417


>ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Vitis
           vinifera]
          Length = 442

 Score =  219 bits (557), Expect = 1e-53
 Identities = 107/158 (67%), Positives = 138/158 (87%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G++C MVAKIAEA+  LSRRLRR PT +EIAE +D++VS ++LVSE+SRTPIS+D+ VT 
Sbjct: 284 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 343

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
           QGCM LQEII GPDET P+KMV ++LMKQEV++ L +L +REA++LRL+FG+NG++P +F
Sbjct: 344 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 403

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           EEIGR++KLSRERVRQIN IALSKLR TS+VD L+LY+
Sbjct: 404 EEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYM 441



 Score =  121 bits (303), Expect(2) = 5e-45
 Identities = 62/100 (62%), Positives = 78/100 (78%)
 Frame = -2

Query: 1571 SSGSVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQLAKAIGMEMRSVD 1392
            S G+ +S  L+ REE + CL LKE A LEA R RI + +EHEPTS Q A+A+G++  S+D
Sbjct: 137  SFGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLD 196

Query: 1391 KMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            KMLC+ R+S+ERI +SYRRLVVSIA  YQG+GLSLQDLIQ
Sbjct: 197  KMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 236



 Score = 90.5 bits (223), Expect(2) = 5e-45
 Identities = 40/48 (83%), Positives = 45/48 (93%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA +FDPDRG+KLSTYVYWWIRQAI+RAI  KSR++RLP
Sbjct: 236  QEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLP 283


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  219 bits (557), Expect = 1e-53
 Identities = 107/158 (67%), Positives = 138/158 (87%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G++C MVAKIAEA+  LSRRLRR PT +EIAE +D++VS ++LVSE+SRTPIS+D+ VT 
Sbjct: 161 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 220

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
           QGCM LQEII GPDET P+KMV ++LMKQEV++ L +L +REA++LRL+FG+NG++P +F
Sbjct: 221 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 280

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           EEIGR++KLSRERVRQIN IALSKLR TS+VD L+LY+
Sbjct: 281 EEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYM 318



 Score =  121 bits (303), Expect(2) = 5e-45
 Identities = 62/100 (62%), Positives = 78/100 (78%)
 Frame = -2

Query: 1571 SSGSVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQLAKAIGMEMRSVD 1392
            S G+ +S  L+ REE + CL LKE A LEA R RI + +EHEPTS Q A+A+G++  S+D
Sbjct: 14   SFGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLD 73

Query: 1391 KMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            KMLC+ R+S+ERI +SYRRLVVSIA  YQG+GLSLQDLIQ
Sbjct: 74   KMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 113



 Score = 90.5 bits (223), Expect(2) = 5e-45
 Identities = 40/48 (83%), Positives = 45/48 (93%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA +FDPDRG+KLSTYVYWWIRQAI+RAI  KSR++RLP
Sbjct: 113  QEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLP 160


>ref|XP_008231483.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Prunus
            mume]
          Length = 442

 Score =  155 bits (393), Expect(2) = 1e-53
 Identities = 99/236 (41%), Positives = 121/236 (51%), Gaps = 13/236 (5%)
 Frame = -2

Query: 1940 MAITTSLCSPPNHSPTLPTFSISNLXXXXXXXXXXXF------------GVNLVSNDXXX 1797
            MAITTS+CS PN  P LPT S+  +                        G NLVSND   
Sbjct: 1    MAITTSICSSPNQPPILPTLSLPTIPFTPLKTHHPLQLHLPFPSSSSKFGGNLVSNDALA 60

Query: 1796 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWIYRD-GSEGNGLVMXXXXXXXXXXXX 1620
                                             W  R+ G+E +GLV             
Sbjct: 61   IAAAAEALVLARAAVEAAIDAVAVTEEIGEV--WSCRENGNESSGLVARRKMRRKRRKRL 118

Query: 1619 XXXXXXXKGYFENKSFSSGSVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPT 1440
                       E+   S G V+  +LS REE +CCLSLKEGA LE+ R R+ +AQ+HEPT
Sbjct: 119  EALDEEMNRDVEDGMVSFGFVRYEHLSPREEAECCLSLKEGARLESERFRVVEAQKHEPT 178

Query: 1439 SKQLAKAIGMEMRSVDKMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            SKQLAKA+GM+MRS+DK+LC RR+SQE+I RSYR LVVS+A  YQG+GLS QDLIQ
Sbjct: 179  SKQLAKAMGMKMRSIDKVLCKRRESQEKIIRSYRGLVVSVASSYQGKGLSFQDLIQ 234



 Score = 84.7 bits (208), Expect(2) = 1e-53
 Identities = 40/48 (83%), Positives = 43/48 (89%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA KFD +R  KLSTYVYWWIRQAIIRAIE KSR++RLP
Sbjct: 234  QEGSIGLLRGAEKFDHERKWKLSTYVYWWIRQAIIRAIENKSRIIRLP 281



 Score =  207 bits (528), Expect = 2e-50
 Identities = 105/161 (65%), Positives = 136/161 (84%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G++C M+AKI +A+N L++RL+R P+ +E+AE + ++ S +KLV E+SR PISLDR  T 
Sbjct: 282 GHVCGMMAKITKAQNSLNQRLQRLPSHDELAEVIKVNASTVKLVCERSRPPISLDRVATV 341

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
           +G M LQEII GP+E MPEKM++++LMKQEV+KLLK+LSDREA+VLRLHFGLNG+SPQ+F
Sbjct: 342 RGSMTLQEIIQGPEEMMPEKMLIRQLMKQEVEKLLKTLSDREANVLRLHFGLNGESPQSF 401

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYLYIL 59
           EEIGR+LKLSRERVRQINGIALSKLR TS +D L  +  +L
Sbjct: 402 EEIGRLLKLSRERVRQINGIALSKLRQTSTLDILYSFSIML 442


>ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prunus persica]
           gi|462415663|gb|EMJ20400.1| hypothetical protein
           PRUPE_ppa017025mg [Prunus persica]
          Length = 440

 Score =  218 bits (554), Expect = 2e-53
 Identities = 108/158 (68%), Positives = 138/158 (87%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G++C M+AKI +A+N L++R +R P+ +EIAE + ++ S +KLV E+SR PISLDR  T 
Sbjct: 282 GHVCGMMAKITKAQNSLNQRFQRLPSHDEIAEVIKVNASTVKLVCERSRPPISLDRVATV 341

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
           +G M LQEII GP+E MPEKM++++LMKQEV+KLLK+LSDREA+VLRLHFGLNG+SPQ+F
Sbjct: 342 RGSMTLQEIIQGPEEMMPEKMLIRQLMKQEVEKLLKTLSDREANVLRLHFGLNGESPQSF 401

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           EEIGR+LKLSRERVRQINGIALSKLR TSI+DNL+LY+
Sbjct: 402 EEIGRLLKLSRERVRQINGIALSKLRQTSILDNLKLYI 439



 Score =  154 bits (390), Expect(2) = 3e-53
 Identities = 98/235 (41%), Positives = 119/235 (50%), Gaps = 12/235 (5%)
 Frame = -2

Query: 1940 MAITTSLCSPPNHSPTLPTFSISNLXXXXXXXXXXXF------------GVNLVSNDXXX 1797
            MAITTS+CS PN  P LPT S+  +                        G NLVSND   
Sbjct: 1    MAITTSICSSPNQPPILPTLSLPTIPFTPLKTHHPLQLHLPFPSSSSKSGGNLVSNDALA 60

Query: 1796 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWIYRDGSEGNGLVMXXXXXXXXXXXXX 1617
                                               +  G+E  GLV              
Sbjct: 61   IAAAAEALVLARAAVEAAIDAVAVTEDIGEVWS-CWESGNESGGLVARRKRRRKRRKGLE 119

Query: 1616 XXXXXXKGYFENKSFSSGSVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTS 1437
                  K   E+   S G V+  +LS REE +CCLSLKEGA LE+ R R+ +AQ+HEPTS
Sbjct: 120  ALDEEMKRDVEDGMVSFGFVRYEHLSPREEAECCLSLKEGARLESERFRVVEAQKHEPTS 179

Query: 1436 KQLAKAIGMEMRSVDKMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            KQLAKA+GM+MRS+DK+LC RR+SQE+I RSYR LVVS+A  YQG+GLS QDLIQ
Sbjct: 180  KQLAKAMGMKMRSIDKVLCKRRESQEKIIRSYRGLVVSVASSYQGKGLSFQDLIQ 234



 Score = 84.7 bits (208), Expect(2) = 3e-53
 Identities = 40/48 (83%), Positives = 43/48 (89%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA KFD +R  KLSTYVYWWIRQAIIRAIE KSR++RLP
Sbjct: 234  QEGSIGLLRGAEKFDHEREWKLSTYVYWWIRQAIIRAIENKSRIIRLP 281


>ref|XP_009354359.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Pyrus x
            bretschneideri]
          Length = 436

 Score =  149 bits (377), Expect(2) = 4e-53
 Identities = 93/232 (40%), Positives = 119/232 (51%), Gaps = 9/232 (3%)
 Frame = -2

Query: 1940 MAITTSLCSPPNHSPTLPTFSISNLXXXXXXXXXXXF--------GVNLVSNDXXXXXXX 1785
            MAIT+S+CS PN SPTLPT  +                       G +LVSND       
Sbjct: 1    MAITSSICSSPNQSPTLPTLPLKTHHPLHLHFPPLSSSSSSSSKFGASLVSNDALVVAAA 60

Query: 1784 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVWIYRDGSEGNG-LVMXXXXXXXXXXXXXXXX 1608
                                         W  R+   G+G LVM                
Sbjct: 61   AEALALARAAVEAARDAAAARDEIVKA--WSCRESGNGSGGLVMRRKGRRQRRRGLEGLG 118

Query: 1607 XXXKGYFENKSFSSGSVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQL 1428
               +    +   S G V+ G+LS +EE +CCLSLKEGA LE+ R+R+ + +E EPTSKQL
Sbjct: 119  EERERGVGDGKLSFGLVRCGHLSSKEEAECCLSLKEGARLESRRLRVVEDEEQEPTSKQL 178

Query: 1427 AKAIGMEMRSVDKMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            AKA+GM+ RS+DK+LC +R+SQERI RSYR L+VS+A  YQG+GLS QDLIQ
Sbjct: 179  AKAMGMKTRSIDKVLCKKRESQERIIRSYRGLIVSVASSYQGKGLSFQDLIQ 230



 Score = 89.0 bits (219), Expect(2) = 4e-53
 Identities = 41/49 (83%), Positives = 46/49 (93%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLPV 1084
            QEGSIGLLRGA KFD +RG KLSTYVYWWIRQAIIRA++KKSR++RLPV
Sbjct: 230  QEGSIGLLRGAEKFDHERGCKLSTYVYWWIRQAIIRALDKKSRIIRLPV 278



 Score =  216 bits (549), Expect = 8e-53
 Identities = 106/157 (67%), Positives = 136/157 (86%)
 Frame = -3

Query: 538 NMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTDQ 359
           NMC M+AKI +AKN  ++R++R PT +EIA+ V++H + +KLV E+SR PISLDR VT Q
Sbjct: 279 NMCGMMAKITKAKNSFNQRIQRLPTYDEIAQEVNVHAATVKLVCERSRPPISLDRVVTVQ 338

Query: 358 GCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTFE 179
           GCM LQEI+ GP+E MPEKM+ K+LMKQEV+KLLK+LSDREA+VLRL FGL+G++P++FE
Sbjct: 339 GCMSLQEIMQGPEEMMPEKMLTKQLMKQEVEKLLKTLSDREAYVLRLRFGLHGETPKSFE 398

Query: 178 EIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           EIGR+LKLSRERVRQINGIALSKL+ TS  +NL+LY+
Sbjct: 399 EIGRLLKLSRERVRQINGIALSKLKQTSTFNNLKLYI 435


>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Fragaria
            vesca subsp. vesca]
          Length = 452

 Score =  145 bits (365), Expect(2) = 3e-52
 Identities = 71/105 (67%), Positives = 87/105 (82%)
 Frame = -2

Query: 1586 ENKSFSSGSVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQLAKAIGME 1407
            E+  FS G V  GYLS REE DCC+SLKEGA+LE+ R R T+AQEHEPTSKQLA A+ ++
Sbjct: 142  EDGRFSFGVVSYGYLSPREEADCCMSLKEGAKLESERTRFTEAQEHEPTSKQLANAMRIK 201

Query: 1406 MRSVDKMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            M S+DK++C+RR+SQERI +SYR LVVS+A  YQG+GLSLQDLIQ
Sbjct: 202  MSSIDKVICNRRESQERIIKSYRGLVVSVASSYQGKGLSLQDLIQ 246



 Score = 90.9 bits (224), Expect(2) = 3e-52
 Identities = 42/48 (87%), Positives = 45/48 (93%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA KFDP+RG KLSTYVYWWIRQAIIRAIE KSR++RLP
Sbjct: 246  QEGSIGLLRGAEKFDPERGLKLSTYVYWWIRQAIIRAIENKSRIIRLP 293



 Score =  209 bits (532), Expect = 8e-51
 Identities = 102/158 (64%), Positives = 132/158 (83%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G+MC ++AKI  AK + ++R +R P+ +EIAE +++  SI++LV E+SR P+SLDR VTD
Sbjct: 294 GHMCGVMAKITRAKKNFNQRFQRLPSHDEIAEMINVQASIVRLVCERSRLPLSLDRVVTD 353

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
           QGCM LQ+II GPDE MPE M+ K+LMKQE++KLL  LSDREA VLRLHFGLNG +PQ+F
Sbjct: 354 QGCMALQDIIRGPDEMMPETMLKKQLMKQEMEKLLNRLSDREAEVLRLHFGLNGDTPQSF 413

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           EEIGR+LKLSRERVRQIN IALSKL+ TS +++L+LY+
Sbjct: 414 EEIGRLLKLSRERVRQINSIALSKLKQTSTLEDLKLYI 451


>gb|KDO83322.1| hypothetical protein CISIN_1g046578mg [Citrus sinensis]
          Length = 379

 Score =  206 bits (523), Expect = 9e-50
 Identities = 101/158 (63%), Positives = 135/158 (85%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G+M  MVAKIAEA N LSRRLRR PT  EIAE +++HVS ++L  E++R PISLD  VTD
Sbjct: 221 GSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTD 280

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
           +GCM +Q+II GPDETMPE+MV K+LMKQE+K+LL++LS+REA +LRLHFGL+G++P + 
Sbjct: 281 RGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 340

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           +EIGR+L LSRER+RQI GIAL+KL+ T+I++NL++Y+
Sbjct: 341 KEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378



 Score = 84.7 bits (208), Expect(2) = 3e-26
 Identities = 38/48 (79%), Positives = 44/48 (91%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA +F+P+RG+KLSTYVYWWI+QAIIRAI  KSR +RLP
Sbjct: 173  QEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLP 220



 Score = 64.3 bits (155), Expect(2) = 3e-26
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = -2

Query: 1391 KMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            K+LC  R+SQERI RSYR LVVSIA GYQG+GLSL+DLIQ
Sbjct: 134  KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQ 173


>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
           gi|557541154|gb|ESR52198.1| hypothetical protein
           CICLE_v10033747mg [Citrus clementina]
          Length = 436

 Score =  204 bits (520), Expect = 2e-49
 Identities = 103/158 (65%), Positives = 133/158 (84%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G+M  MVAKIAEA N LSRRLRR PT  EIAE +++HVS ++L  E++R PISLD  +TD
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDNEIAEMLNIHVSTVRLAIERTRHPISLDGAITD 337

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
            GCM LQ+II GPDETMPEKMV K+LMKQE+K+LL++LS+REA +LRLHFGL+G++P + 
Sbjct: 338 TGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 397

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           +EIGR+L LSRERVRQI GIAL+KL+ T+I +NL++Y+
Sbjct: 398 KEIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYM 435



 Score =  119 bits (297), Expect(2) = 4e-42
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = -2

Query: 1547 YLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQLAKAIGMEMRSVDKMLCDRRD 1368
            YL+  EE + C SLKEGA+LE  R  +  A+EHE  SKQLAKA GM+   VDK+LC  R+
Sbjct: 139  YLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERE 198

Query: 1367 SQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            SQERI RSYR LVVSIA GYQG+GLSL+DLIQ
Sbjct: 199  SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQ 230



 Score = 83.2 bits (204), Expect(2) = 4e-42
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA +F+P+RG+KLSTYVYWWI+QAIIR I  KSR +RLP
Sbjct: 230  QEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTIANKSRTIRLP 277


>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Citrus sinensis]
          Length = 436

 Score =  204 bits (518), Expect = 3e-49
 Identities = 103/158 (65%), Positives = 133/158 (84%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G+M  MVAKIAEA N LSRRLRR PT  EIAE +++HVS ++L  E++R PISLD  +TD
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSNVRLAIERTRHPISLDGAITD 337

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
            GCM LQ+II GPDETMPEKMV K+LMKQE+K+LL++LS+REA +LRLHFGL+G++P + 
Sbjct: 338 TGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 397

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           +EIGR+L LSRERVRQI GIAL+KL+ T+I +NL++Y+
Sbjct: 398 KEIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYM 435



 Score =  119 bits (297), Expect(2) = 4e-42
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = -2

Query: 1547 YLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQLAKAIGMEMRSVDKMLCDRRD 1368
            YL+  EE + C SLKEGA+LE  R  +  A+EHE  SKQLAKA GM+   VDK+LC  R+
Sbjct: 139  YLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERE 198

Query: 1367 SQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            SQERI RSYR LVVSIA GYQG+GLSL+DLIQ
Sbjct: 199  SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQ 230



 Score = 83.2 bits (204), Expect(2) = 4e-42
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA +F+P+RG+KLSTYVYWWI+QAIIR I  KSR +RLP
Sbjct: 230  QEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTIANKSRTIRLP 277


>ref|XP_014500709.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Vigna
           radiata var. radiata]
          Length = 351

 Score =  196 bits (498), Expect = 7e-47
 Identities = 98/158 (62%), Positives = 127/158 (80%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G  C +VAK+A+A N LS RLRR PT +E A+ +++  S I+LVSEKSR PISLD+ VTD
Sbjct: 193 GGKCELVAKVAQANNILSTRLRRKPTYDETAKVLNVKTSTIRLVSEKSRAPISLDKVVTD 252

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
            G M LQEIIAGP+E  PEKMV ++LMK+EV  LLK+LS REA ++ LH+GLNG +P++F
Sbjct: 253 CGHMTLQEIIAGPEEITPEKMVKRQLMKEEVMDLLKTLSKREAEIVALHYGLNGDTPRSF 312

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           +EIG +++LSRER+RQINGIALSKLR TS +D+L+ YL
Sbjct: 313 KEIGGMMQLSRERIRQINGIALSKLRQTSFIDDLKFYL 350



 Score = 85.9 bits (211), Expect(2) = 3e-30
 Identities = 37/48 (77%), Positives = 46/48 (95%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEG+IGLLRGA KF+P+RG+KLSTYVYWWI+QA+I+A+ +KSRLVRLP
Sbjct: 145  QEGTIGLLRGAEKFEPERGYKLSTYVYWWIKQAMIKAVARKSRLVRLP 192



 Score = 76.6 bits (187), Expect(2) = 3e-30
 Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
 Frame = -2

Query: 1565 GSVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQLAKAIGMEMRSV--- 1395
            G  KS +LS REE + CL L+  ++   T  +    +  +P +K L +   +  RSV   
Sbjct: 45   GFRKSWFLSSREEAELCLGLRVSSDKTQTPKQGAKTEVAKPKTKGLEEPSAITRRSVLSL 104

Query: 1394 DKMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            DK +C+ R ++ER+   YR LV SIA GY+G+GLSLQDLIQ
Sbjct: 105  DKAMCNERQTKERLAHDYRGLVTSIAAGYKGKGLSLQDLIQ 145


>ref|XP_007148895.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
           gi|561022159|gb|ESW20889.1| hypothetical protein
           PHAVU_005G023100g [Phaseolus vulgaris]
          Length = 367

 Score =  194 bits (494), Expect = 2e-46
 Identities = 99/153 (64%), Positives = 125/153 (81%)
 Frame = -3

Query: 526 MVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTDQGCMR 347
           MVAK+A+A N LS RLRR PT +E AE +++  S I+LVSEKSR PISLD+ VTD G M 
Sbjct: 214 MVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHMT 273

Query: 346 LQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTFEEIGR 167
           LQEII GP++  PEKMV ++LMKQEV KLL +LS REA ++ L++GLNG++P TF+EIG 
Sbjct: 274 LQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIGG 333

Query: 166 VLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           +++LSRER+RQINGIALSKLR TSI+DNL+ YL
Sbjct: 334 MMQLSRERIRQINGIALSKLRQTSIIDNLKFYL 366



 Score = 85.9 bits (211), Expect(2) = 4e-30
 Identities = 37/48 (77%), Positives = 46/48 (95%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEG++GLLRGA KF+P+RG+KLSTYVYWWI+QA+I+AI +KSRLVRLP
Sbjct: 161  QEGTVGLLRGAEKFEPERGYKLSTYVYWWIKQAMIKAIARKSRLVRLP 208



 Score = 75.9 bits (185), Expect(2) = 4e-30
 Identities = 46/109 (42%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
 Frame = -2

Query: 1565 GSVKSGYLSRREEVDCCLSLK-----------EGAELEATRIRITDAQEHEPTSKQLAKA 1419
            G  KS YLS REE + CL L+           +GA+ E  ++     +EH          
Sbjct: 60   GFRKSWYLSSREEAELCLDLRVSSDKTQTPQQQGAKSEVAKLITKGLEEHSAIPI----- 114

Query: 1418 IGMEMRSVDKMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
              M + S+DK LC+ R+S+ER+   YR LV SIA GY G+GLSLQDLIQ
Sbjct: 115  --MSLLSLDKALCNARESKERLANDYRGLVTSIAAGYLGKGLSLQDLIQ 161


>ref|XP_007148893.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
           gi|561022157|gb|ESW20887.1| hypothetical protein
           PHAVU_005G023100g [Phaseolus vulgaris]
          Length = 366

 Score =  194 bits (494), Expect = 2e-46
 Identities = 99/153 (64%), Positives = 125/153 (81%)
 Frame = -3

Query: 526 MVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTDQGCMR 347
           MVAK+A+A N LS RLRR PT +E AE +++  S I+LVSEKSR PISLD+ VTD G M 
Sbjct: 213 MVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHMT 272

Query: 346 LQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTFEEIGR 167
           LQEII GP++  PEKMV ++LMKQEV KLL +LS REA ++ L++GLNG++P TF+EIG 
Sbjct: 273 LQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIGG 332

Query: 166 VLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           +++LSRER+RQINGIALSKLR TSI+DNL+ YL
Sbjct: 333 MMQLSRERIRQINGIALSKLRQTSIIDNLKFYL 365



 Score = 85.9 bits (211), Expect(2) = 3e-30
 Identities = 37/48 (77%), Positives = 46/48 (95%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEG++GLLRGA KF+P+RG+KLSTYVYWWI+QA+I+AI +KSRLVRLP
Sbjct: 160  QEGTVGLLRGAEKFEPERGYKLSTYVYWWIKQAMIKAIARKSRLVRLP 207



 Score = 76.3 bits (186), Expect(2) = 3e-30
 Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
 Frame = -2

Query: 1565 GSVKSGYLSRREEVDCCLSLK----------EGAELEATRIRITDAQEHEPTSKQLAKAI 1416
            G  KS YLS REE + CL L+          +GA+ E  ++     +EH           
Sbjct: 60   GFRKSWYLSSREEAELCLDLRVSSDKTQTPQQGAKSEVAKLITKGLEEHSAIPI------ 113

Query: 1415 GMEMRSVDKMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
             M + S+DK LC+ R+S+ER+   YR LV SIA GY G+GLSLQDLIQ
Sbjct: 114  -MSLLSLDKALCNARESKERLANDYRGLVTSIAAGYLGKGLSLQDLIQ 160


>ref|XP_007148892.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
           gi|561022156|gb|ESW20886.1| hypothetical protein
           PHAVU_005G023100g [Phaseolus vulgaris]
          Length = 296

 Score =  194 bits (494), Expect = 2e-46
 Identities = 99/153 (64%), Positives = 125/153 (81%)
 Frame = -3

Query: 526 MVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTDQGCMR 347
           MVAK+A+A N LS RLRR PT +E AE +++  S I+LVSEKSR PISLD+ VTD G M 
Sbjct: 143 MVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHMT 202

Query: 346 LQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTFEEIGR 167
           LQEII GP++  PEKMV ++LMKQEV KLL +LS REA ++ L++GLNG++P TF+EIG 
Sbjct: 203 LQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIGG 262

Query: 166 VLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           +++LSRER+RQINGIALSKLR TSI+DNL+ YL
Sbjct: 263 MMQLSRERIRQINGIALSKLRQTSIIDNLKFYL 295



 Score = 85.9 bits (211), Expect = 1e-13
 Identities = 37/48 (77%), Positives = 46/48 (95%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEG++GLLRGA KF+P+RG+KLSTYVYWWI+QA+I+AI +KSRLVRLP
Sbjct: 90   QEGTVGLLRGAEKFEPERGYKLSTYVYWWIKQAMIKAIARKSRLVRLP 137


>ref|XP_011089039.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Sesamum
           indicum]
          Length = 446

 Score =  191 bits (486), Expect = 2e-45
 Identities = 95/158 (60%), Positives = 124/158 (78%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G++  +V KI EA   LSRRLRR PT +EIAEA+D + S ++L  E++R+PISLD  +T 
Sbjct: 289 GSISELVPKICEANAALSRRLRRPPTYDEIAEAIDANSSAVRLAIERNRSPISLDEAITS 348

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
           QGCM LQ+I+AGPDE  PE MV K  +K E++KLLK L DREAH+LRLH+GLNG++P +F
Sbjct: 349 QGCMSLQDIVAGPDEITPEAMVKKDQLKPEIQKLLKPLCDREAHILRLHYGLNGETPWSF 408

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           EEIGRVL+LSRERVRQIN  AL K+R TS V++L+ ++
Sbjct: 409 EEIGRVLELSRERVRQINSAALLKIRQTSKVEDLKHFI 446



 Score = 81.6 bits (200), Expect(2) = 3e-28
 Identities = 36/48 (75%), Positives = 43/48 (89%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA KF+P+RG+KLSTY YWWIRQ+I RAI  KS+++RLP
Sbjct: 241  QEGSIGLLRGAIKFNPERGYKLSTYAYWWIRQSITRAIANKSKIIRLP 288



 Score = 73.9 bits (180), Expect(2) = 3e-28
 Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
 Frame = -2

Query: 1505 KEGAELEATRIRI-TDAQEHEPTSKQLAKAIGMEMRSVDKMLCDRRDSQERIYRSYRRLV 1329
            +E A + A +  +  +    E +S Q AKA G+  R++D++LC+ R+S+ERI   YRRLV
Sbjct: 163  QERARIVAVKTELLAETGRREVSSSQWAKAAGISQRNLDRILCNGRESEERITSCYRRLV 222

Query: 1328 VSIAVGYQGRGLSLQDLIQ 1272
            VSIA  YQG+GLSLQDL Q
Sbjct: 223  VSIASSYQGKGLSLQDLTQ 241


>ref|XP_003599429.2| RNA polymerase sigma factor [Medicago truncatula]
           gi|657392288|gb|AES69680.2| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 154

 Score =  191 bits (484), Expect = 3e-45
 Identities = 98/153 (64%), Positives = 126/153 (82%)
 Frame = -3

Query: 526 MVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTDQGCMR 347
           MVAKIAEA N L RRLRR PT  EIAE ++++VS +KLVSE+SR PISLDR++TDQ  + 
Sbjct: 1   MVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLI 60

Query: 346 LQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTFEEIGR 167
           L+EII GP E +PEKMV ++LMKQ V KLL +L  RE  ++RL+FGLNG++P +FEEIG+
Sbjct: 61  LKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGK 120

Query: 166 VLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           +LKLSRER+RQI+GIALSKLR  +IVD+L+ Y+
Sbjct: 121 LLKLSRERIRQIHGIALSKLRQNTIVDSLKFYV 153


>ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cicer
           arietinum]
          Length = 407

 Score =  190 bits (483), Expect = 4e-45
 Identities = 97/153 (63%), Positives = 128/153 (83%)
 Frame = -3

Query: 526 MVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTDQGCMR 347
           MV KIAEAKN LS+RLRR PT  E+AE ++++VSI+KLVSE+SR PISLD+ V DQG + 
Sbjct: 254 MVGKIAEAKNVLSKRLRRKPTYNEMAEVLNVNVSIVKLVSERSRQPISLDKAVFDQGNLT 313

Query: 346 LQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTFEEIGR 167
           L+EI+ GP E +PEKMV ++L KQ V KLL +L+ REA +LRL+FGLNG++P +FEEIG+
Sbjct: 314 LKEIMPGPVEMIPEKMVERQLKKQGVVKLLNTLNKREAEILRLYFGLNGETPLSFEEIGK 373

Query: 166 VLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
            LKLSRER+RQI+GIALSKL+ T++VD+L+ Y+
Sbjct: 374 QLKLSRERIRQIHGIALSKLQQTTLVDSLKFYV 406



 Score = 83.2 bits (204), Expect(2) = 7e-31
 Identities = 37/48 (77%), Positives = 44/48 (91%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEG+IGLL GA KFDP+RG KLSTYVYWWI+QAI++A+ +KSRLVRLP
Sbjct: 201  QEGTIGLLHGAEKFDPNRGCKLSTYVYWWIKQAILKALARKSRLVRLP 248



 Score = 81.3 bits (199), Expect(2) = 7e-31
 Identities = 45/102 (44%), Positives = 64/102 (62%)
 Frame = -2

Query: 1577 SFSSGSVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQLAKAIGMEMRS 1398
            +FS      G+LS  EE + CL LKEGA +E ++ R+T+ + +   S++LA        S
Sbjct: 104  NFSREKELVGFLSSIEEAEICLGLKEGARIEVSKHRMTEHEGNSSISRRLAHG----NTS 159

Query: 1397 VDKMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            +DK+L + R+S+ER+   YR LV SIA  YQG+GLS QDL Q
Sbjct: 160  LDKVLSNTRESKERLAHEYRGLVASIAARYQGKGLSFQDLTQ 201


>ref|XP_010557806.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform
           X2 [Tarenaya hassleriana]
          Length = 428

 Score =  190 bits (482), Expect = 5e-45
 Identities = 92/158 (58%), Positives = 130/158 (82%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G+M  ++AK+ EA N LS  LRRAPTCEEIA  +++H+S ++L  +++R+P SLDR  +D
Sbjct: 271 GSMWELMAKVTEASNVLSGSLRRAPTCEEIANHLNLHISSVRLALDRTRSPASLDRQASD 330

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
           +G M LQEI+ GPDET PE M+ +RL+K+ +KKLL++L++RE+ VLRL+FGLNG++P +F
Sbjct: 331 RGRMTLQEIVQGPDETTPEYMLKRRLVKKGIKKLLETLTERESRVLRLYFGLNGETPMSF 390

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLYL 68
           EEIG+ LKLSRERVRQINGIAL+KLR+   V++L++YL
Sbjct: 391 EEIGKKLKLSRERVRQINGIALAKLRNEHNVNDLKMYL 428



 Score = 94.0 bits (232), Expect(2) = 1e-35
 Identities = 52/100 (52%), Positives = 71/100 (71%)
 Frame = -2

Query: 1571 SSGSVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQLAKAIGMEMRSVD 1392
            S G  +SG+LSR EE + CL LKEGA+LE    R  DAQ +E  S +L+   G ++R +D
Sbjct: 125  SIGPSRSGFLSREEEAELCLRLKEGAKLETYGTRAEDAQGNEVASVRLSGGRGKKIR-LD 183

Query: 1391 KMLCDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            ++L  RR+++E++ R Y+RLVVSIA  YQ RGL+LQDLIQ
Sbjct: 184  EILHRRREAREKLTRCYKRLVVSIASAYQDRGLNLQDLIQ 223



 Score = 86.3 bits (212), Expect(2) = 1e-35
 Identities = 39/48 (81%), Positives = 44/48 (91%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA KFDP+RG+KLSTYVYWWI+QAI++AI   SRLVRLP
Sbjct: 223  QEGSIGLLRGAEKFDPERGYKLSTYVYWWIKQAILKAIAHNSRLVRLP 270


>ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arabidopsis lyrata subsp.
           lyrata] gi|297319462|gb|EFH49884.1| hypothetical protein
           ARALYDRAFT_909325 [Arabidopsis lyrata subsp. lyrata]
          Length = 273

 Score =  189 bits (479), Expect = 1e-44
 Identities = 93/157 (59%), Positives = 126/157 (80%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G+M  + AK+AEA N L+R+LRR P+CEEIAE +++HVS ++L  E+SR+P+SLDR V+ 
Sbjct: 112 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLHVSAVRLAVERSRSPVSLDRVVSQ 171

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
            G M LQEI+ GPDET PE+MV +  MK E+++LL SL+ RE+ VL L+FGLNG++P +F
Sbjct: 172 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 231

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLY 71
           EEIG+ LKLSRERVRQINGIAL KLR+   V++L++Y
Sbjct: 232 EEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 268



 Score = 88.6 bits (218), Expect(2) = 1e-16
 Identities = 40/48 (83%), Positives = 45/48 (93%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA +FDPDRG+KLSTYVYWWI+QAI+RAI  KSRLV+LP
Sbjct: 64   QEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLP 111



 Score = 28.1 bits (61), Expect(2) = 1e-16
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 1316 VGYQGRGLSLQDLIQ 1272
            V YQG+GL+LQDLIQ
Sbjct: 50   VWYQGKGLNLQDLIQ 64


>gb|KFK25599.1| hypothetical protein AALP_AA8G135300 [Arabis alpina]
          Length = 413

 Score =  188 bits (478), Expect = 1e-44
 Identities = 91/157 (57%), Positives = 127/157 (80%)
 Frame = -3

Query: 541 GNMCMMVAKIAEAKNDLSRRLRRAPTCEEIAEAVDMHVSIIKLVSEKSRTPISLDRTVTD 362
           G+M  + AK+AEA N L+R+LRR P+CEEIAE +++HVS ++L  E+ R+PISLDR  + 
Sbjct: 252 GSMWELTAKVAEASNVLTRKLRRPPSCEEIAEHLNLHVSAVRLAVERGRSPISLDRVASQ 311

Query: 361 QGCMRLQEIIAGPDETMPEKMVMKRLMKQEVKKLLKSLSDREAHVLRLHFGLNGKSPQTF 182
            G M LQEI+ GP+ET PE+MV +  MKQE+++LL +L+ RE+ VL L+FGLNG++P +F
Sbjct: 312 NGRMTLQEIVRGPEETRPEEMVKREHMKQEIEQLLGTLTARESRVLGLYFGLNGETPMSF 371

Query: 181 EEIGRVLKLSRERVRQINGIALSKLRHTSIVDNLRLY 71
           EEIG++LKLSRERVRQING+AL+KLR+   V++LR+Y
Sbjct: 372 EEIGKLLKLSRERVRQINGLALTKLRNVQYVNDLRIY 408



 Score = 92.4 bits (228), Expect(2) = 2e-35
 Identities = 51/97 (52%), Positives = 67/97 (69%)
 Frame = -2

Query: 1562 SVKSGYLSRREEVDCCLSLKEGAELEATRIRITDAQEHEPTSKQLAKAIGMEMRSVDKML 1383
            S +SG+LSR EEV  CL LKEGA+LE     + D +        L  + G + RSV+++L
Sbjct: 112  SSRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEDKE----MVSVLMSSKGKKKRSVNEIL 167

Query: 1382 CDRRDSQERIYRSYRRLVVSIAVGYQGRGLSLQDLIQ 1272
            C RR+++E+I R YRRLVVSIA  YQG+GL+LQDLIQ
Sbjct: 168  CRRREAREKITRCYRRLVVSIATSYQGKGLNLQDLIQ 204



 Score = 87.0 bits (214), Expect(2) = 2e-35
 Identities = 39/48 (81%), Positives = 45/48 (93%)
 Frame = -1

Query: 1230 QEGSIGLLRGAHKFDPDRGHKLSTYVYWWIRQAIIRAIEKKSRLVRLP 1087
            QEGSIGLLRGA +FDP+RG+KLSTYVYWWI+QAI+RAI  KSRLV+LP
Sbjct: 204  QEGSIGLLRGAERFDPERGYKLSTYVYWWIKQAILRAIAHKSRLVKLP 251