BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00006413
         (4593 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010094746.1| Chloroplastic group IIA intron splicing faci...  1150   0.0  
ref|XP_007211308.1| hypothetical protein PRUPE_ppa001468mg [Prun...  1115   0.0  
ref|XP_008240263.1| PREDICTED: chloroplastic group IIA intron sp...  1112   0.0  
ref|XP_004300521.1| PREDICTED: chloroplastic group IIA intron sp...  1090   0.0  
ref|XP_009347186.1| PREDICTED: chloroplastic group IIA intron sp...  1087   0.0  
ref|XP_008374754.1| PREDICTED: chloroplastic group IIA intron sp...  1080   0.0  
ref|XP_009360154.1| PREDICTED: chloroplastic group IIA intron sp...  1073   0.0  
ref|XP_008393315.1| PREDICTED: chloroplastic group IIA intron sp...  1068   0.0  
ref|XP_007036533.1| CRS1 / YhbY domain-containing protein [Theob...  1054   0.0  
ref|XP_010663603.1| PREDICTED: chloroplastic group IIA intron sp...  1047   0.0  
ref|XP_010663604.1| PREDICTED: chloroplastic group IIA intron sp...  1045   0.0  
emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]  1039   0.0  
ref|XP_012093011.1| PREDICTED: chloroplastic group IIA intron sp...  1028   0.0  
ref|XP_010045645.1| PREDICTED: chloroplastic group IIA intron sp...  1011   0.0  
gb|KCW83864.1| hypothetical protein EUGRSUZ_B00725 [Eucalyptus g...  1006   0.0  
ref|XP_012440292.1| PREDICTED: chloroplastic group IIA intron sp...  1005   0.0  
ref|XP_012440291.1| PREDICTED: chloroplastic group IIA intron sp...  1004   0.0  
ref|XP_006440978.1| hypothetical protein CICLE_v10018859mg [Citr...  1003   0.0  
ref|XP_012440290.1| PREDICTED: chloroplastic group IIA intron sp...  1000   0.0  
ref|XP_010265125.1| PREDICTED: chloroplastic group IIA intron sp...   997   0.0  

>ref|XP_010094746.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis] gi|587867514|gb|EXB56911.1| Chloroplastic
            group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 838

 Score = 1150 bits (2976), Expect = 0.0
 Identities = 607/833 (72%), Positives = 682/833 (81%), Gaps = 10/833 (1%)
 Frame = -3

Query: 4366 FYEMPLRNSLPLASRSSPSINILFSPPKPS-SFHILRTFSSLKTTEHSDRRNSRTNRFPN 4190
            F E+PLRNSLPL S S  S+N+L S   P+ SFHIL+TF S+KTTE S         +P 
Sbjct: 9    FSELPLRNSLPLTSHSH-SLNLLISSSSPNPSFHILKTFCSVKTTERSS--------YP- 58

Query: 4189 SLDDQNPKPLSHKTPKS-----TSAPWLNKWPSPTPLTNHNSVESNGREK----NAGGYV 4037
               DQNPKP S  +  S      SAPWLNKWP P   ++    ES  R++    +  GYV
Sbjct: 59   -WKDQNPKPSSSSSSSSHRHKPPSAPWLNKWP-PVESSDRKVAESTDRDRTDRPDTVGYV 116

Query: 4036 GKDRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQR 3857
             +DRG+++IERIVLRLRN                        QD+M  TG+EKLGDLL+R
Sbjct: 117  DRDRGRNAIERIVLRLRNLGLGSDDEDEDDKEGDIGLDG---QDAMPVTGEEKLGDLLRR 173

Query: 3856 EWVRPDYVLAEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEEL 3677
            EW+RPD+VL EE+S D++ LPWER++             +RKRRV APTLAELT+EDEEL
Sbjct: 174  EWIRPDFVLEEEESKDDLTLPWEREEEEKGVDEGTRE--LRKRRVNAPTLAELTIEDEEL 231

Query: 3676 RRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVER 3497
            RRLRRMGMF+R+RIS+PKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVER
Sbjct: 232  RRLRRMGMFLRDRISVPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVER 291

Query: 3496 RTGGLVIWRSGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATSN 3317
            RTGGLV WRSGSVMVVYRGS YEGP KTQP+++ERDALFIPDVS+AE+ L RSG   TSN
Sbjct: 292  RTGGLVTWRSGSVMVVYRGSNYEGPPKTQPVNKERDALFIPDVSSAENFLTRSGDSLTSN 351

Query: 3316 LEKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYKT 3137
             EKSE    N    QNMT EEAEFNSLLDDLGPRF EWWGTGV+PVDADLLP K+P YKT
Sbjct: 352  AEKSETPVRNPVSVQNMTEEEAEFNSLLDDLGPRFDEWWGTGVIPVDADLLPPKIPGYKT 411

Query: 3136 PFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIA 2957
            PFRLLPTGMRSRLTNGEMTNLRKVAKS+P HFALGRNRNHQGLA AI+KLWEKSLVAKIA
Sbjct: 412  PFRLLPTGMRSRLTNGEMTNLRKVAKSLPSHFALGRNRNHQGLAAAIIKLWEKSLVAKIA 471

Query: 2956 VKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQV 2777
            VKRGIQNTNNKLMAEELK LTGGVLLLRNKYYIVIYRGKDFLPTTVAA LAERQ+LAKQV
Sbjct: 472  VKRGIQNTNNKLMAEELKNLTGGVLLLRNKYYIVIYRGKDFLPTTVAATLAERQKLAKQV 531

Query: 2776 QDVEEKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQKM 2597
            QD+EE+VRVQD+E+K++   VD+VPS EE GQALAGTLAEFYEAQARWGREIT+EER+KM
Sbjct: 532  QDLEEQVRVQDIEQKMQKKAVDSVPSGEEEGQALAGTLAEFYEAQARWGREITSEEREKM 591

Query: 2596 IEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERVM 2417
            IEE ++AK+ R VKRIEHK A+AQAKKLRAE+LLAKIEASM+PAGPDYDQETIT+EERVM
Sbjct: 592  IEEAAVAKHARLVKRIEHKAAVAQAKKLRAEKLLAKIEASMVPAGPDYDQETITEEERVM 651

Query: 2416 FRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYES 2237
            FRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLI+KQKTL+FVEDTARLLEYES
Sbjct: 652  FRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYES 711

Query: 2236 GGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHISD 2057
            GGILVAIERVPKGFALIYYRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHIS+
Sbjct: 712  GGILVAIERVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISE 771

Query: 2056 LESTIEQMRNEIGVSQDVEEENVACLKDRKHIDDALDSITDEDEASDLDSDYN 1898
            LE+TIEQM+++I  S+  ++E  +   D    D+  + I  E++ +  DSDYN
Sbjct: 772  LETTIEQMQDKIVASKSGQDEG-SWSTDENLNDNVSEFIQSENDDAFEDSDYN 823


>ref|XP_007211308.1| hypothetical protein PRUPE_ppa001468mg [Prunus persica]
            gi|462407043|gb|EMJ12507.1| hypothetical protein
            PRUPE_ppa001468mg [Prunus persica]
          Length = 820

 Score = 1115 bits (2884), Expect = 0.0
 Identities = 592/832 (71%), Positives = 666/832 (80%), Gaps = 13/832 (1%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSSPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPNSLD 4181
            EMPLR+SLPL S SS S+N LFS  KPS F +L+ FSSLK TEHS   N++         
Sbjct: 10   EMPLRSSLPLTSHSSSSLNFLFSASKPS-FRLLKPFSSLKATEHSGNPNAKP-------- 60

Query: 4180 DQNPKPLSHKTPKSTSAPWLNKWP---SPTPL----TNHNSVESNGREK----NAGGYVG 4034
                   SHK+ K  SAPWLN WP   SP  L     N    ES+GR++    N   Y  
Sbjct: 61   -------SHKS-KPPSAPWLNTWPPRNSPAELPCQKVNEKVNESHGRDQAVKANTTRYFD 112

Query: 4033 KDRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRP--TGDEKLGDLLQ 3860
            K++G+S+IERIVLRLRN                        QDSM+P  +G+EKLGDLLQ
Sbjct: 113  KNKGQSAIERIVLRLRNLGLGSDDEEEDDGLGLDG------QDSMQPAESGEEKLGDLLQ 166

Query: 3859 REWVRPDYVLAEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEE 3680
            REWVRPDYVLAE+KS+DE+ALPWE++D             +RKRRV+AP+LAELT+EDEE
Sbjct: 167  REWVRPDYVLAEQKSNDEVALPWEKEDEISEEEEVKG---LRKRRVKAPSLAELTIEDEE 223

Query: 3679 LRRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVE 3500
            L+RLRRMGM +RERIS+PKAG+TQAVLEKIHD WRKEELVRLKFHEVLA DMKTAHEIVE
Sbjct: 224  LKRLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKEELVRLKFHEVLALDMKTAHEIVE 283

Query: 3499 RRTGGLVIWRSGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATS 3320
            RRTGGLV+WRSGSVMVVYRGS Y+GPSK+Q + RE  ALFIPDVS+AE    RSG DATS
Sbjct: 284  RRTGGLVLWRSGSVMVVYRGSNYKGPSKSQTVDREGGALFIPDVSSAETSATRSGNDATS 343

Query: 3319 NLEKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYK 3140
              + +E A        NMT EEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLP+ +P YK
Sbjct: 344  GPDNNEKAVKIPAHLPNMTEEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPKTIPGYK 403

Query: 3139 TPFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKI 2960
            TPFRLLPTGMRSRLTN EMTNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS VAKI
Sbjct: 404  TPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLASAIIKLWEKSSVAKI 463

Query: 2959 AVKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQ 2780
            AVKRGIQNTNNKLMAEELK LTGGVLLLRNKYYIV YRGKDFLPT+VAAALAERQ+L KQ
Sbjct: 464  AVKRGIQNTNNKLMAEELKTLTGGVLLLRNKYYIVFYRGKDFLPTSVAAALAERQELTKQ 523

Query: 2779 VQDVEEKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQK 2600
            VQDVEEK+R++          +DA  S  E GQALAGTLAEFYEAQARWGREI+AEER+K
Sbjct: 524  VQDVEEKMRIK---------AIDAASSGAEEGQALAGTLAEFYEAQARWGREISAEEREK 574

Query: 2599 MIEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERV 2420
            MIEEDS AKN R VKRIEHKL +AQAKKLRAE+LL+KIE+SM+PAGPDYDQET+TDEERV
Sbjct: 575  MIEEDSKAKNARLVKRIEHKLGVAQAKKLRAEKLLSKIESSMLPAGPDYDQETVTDEERV 634

Query: 2419 MFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYE 2240
            MFRRVGLRMKAYLPLGIRGVFDGV+ENMHLHWKHRELVKLISKQKTL+FVEDTARLLE+E
Sbjct: 635  MFRRVGLRMKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEFE 694

Query: 2239 SGGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHIS 2060
            SGGILVAIERVPKG+ALIYYRGKNY+RPI++RPRNLLTKAKALKRSVA+QRHEALSQHIS
Sbjct: 695  SGGILVAIERVPKGYALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAIQRHEALSQHIS 754

Query: 2059 DLESTIEQMRNEIGVSQDVEEENVACLKDRKHIDDALDSITDEDEASDLDSD 1904
            +LE TIEQM +EIGVS+D+ +E+    +D   I  A + +  EDEAS + SD
Sbjct: 755  ELEKTIEQMSSEIGVSEDIADESTWSSRDPDQIHGASEFVQSEDEASRMGSD 806


>ref|XP_008240263.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Prunus mume]
          Length = 820

 Score = 1112 bits (2875), Expect = 0.0
 Identities = 589/832 (70%), Positives = 663/832 (79%), Gaps = 13/832 (1%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSSPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPNSLD 4181
            EMPLR+SLPL S SS S+N LFS  KPS F +L+ FSSLK TEHS   N++         
Sbjct: 10   EMPLRSSLPLTSHSSSSLNFLFSASKPS-FRLLKPFSSLKATEHSGNPNAKP-------- 60

Query: 4180 DQNPKPLSHKTPKSTSAPWLNKWPS-------PTPLTNHNSVESNGREK----NAGGYVG 4034
                   SHK+ ++ SAPWLNKWP        P    N    ES+GR++    N   Y  
Sbjct: 61   -------SHKS-RTPSAPWLNKWPPRNSSAELPRQKVNEKVNESHGRDQAVKANTTRYFD 112

Query: 4033 KDRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRP--TGDEKLGDLLQ 3860
            K++G+S+IERIVLRLRN                        QDSM+P  +G+EKLGDLLQ
Sbjct: 113  KNKGQSAIERIVLRLRNLGLGSDDEEEDDGLELDG------QDSMQPAASGEEKLGDLLQ 166

Query: 3859 REWVRPDYVLAEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEE 3680
            REWVRPDYVLAE+KS+DE+ALPWE+++             +RKRRV+AP+LAELT+EDEE
Sbjct: 167  REWVRPDYVLAEQKSNDEVALPWEKEEEISEEEEVKG---LRKRRVKAPSLAELTIEDEE 223

Query: 3679 LRRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVE 3500
            L+RLRRMGM +RERIS+PKAG+TQAVLEKIHD WRKEELVRLKFHEVLA DMKTAHEIVE
Sbjct: 224  LKRLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKEELVRLKFHEVLALDMKTAHEIVE 283

Query: 3499 RRTGGLVIWRSGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATS 3320
            RRTGGLV+WRSGSVMVVYRGS Y+GPSK+Q +  E  ALFIPDVS+AE    RSG DATS
Sbjct: 284  RRTGGLVLWRSGSVMVVYRGSNYKGPSKSQTVDGEGGALFIPDVSSAETSATRSGNDATS 343

Query: 3319 NLEKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYK 3140
              + +E A        NMT EEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLP+ +P YK
Sbjct: 344  GPDNTEKAVKIPAHLPNMTEEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPKTIPGYK 403

Query: 3139 TPFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKI 2960
            TPFRLLPTGMRSRLTN EMTNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS VAKI
Sbjct: 404  TPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLASAIIKLWEKSSVAKI 463

Query: 2959 AVKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQ 2780
            AVKRGIQNTNNKLMAEELK LTGGVLLLRNKYYIV YRGKDFLPT+VAAALAERQ+L KQ
Sbjct: 464  AVKRGIQNTNNKLMAEELKTLTGGVLLLRNKYYIVFYRGKDFLPTSVAAALAERQELTKQ 523

Query: 2779 VQDVEEKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQK 2600
            VQDVEEK+R++          +D   S  E GQALAGTLAEFYEAQARWGREI+AEER+K
Sbjct: 524  VQDVEEKMRIK---------AIDTASSGAEEGQALAGTLAEFYEAQARWGREISAEEREK 574

Query: 2599 MIEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERV 2420
            MIEEDS AKN R VKRIEHKL +AQAKKLRAE+LL+KIE+SM+PAGPDYDQET+TDEERV
Sbjct: 575  MIEEDSKAKNARLVKRIEHKLGVAQAKKLRAEKLLSKIESSMLPAGPDYDQETVTDEERV 634

Query: 2419 MFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYE 2240
            MFRRVGLRMKAYLPLGIRGVFDGV+ENMHLHWKHRELVKLISKQKTL+FVEDTARLLE+E
Sbjct: 635  MFRRVGLRMKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEFE 694

Query: 2239 SGGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHIS 2060
            SGGILVAIERVPKGFALIYYRGKNY+RPI++RPRNLLTKAKALKRSVAMQRHEALSQHIS
Sbjct: 695  SGGILVAIERVPKGFALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAMQRHEALSQHIS 754

Query: 2059 DLESTIEQMRNEIGVSQDVEEENVACLKDRKHIDDALDSITDEDEASDLDSD 1904
            +LE TIEQM +EIGVS+D+  E+    +D   I  A + +  EDEAS + SD
Sbjct: 755  ELEKTIEQMSSEIGVSEDIAYESTWSSRDPDQIHRASEFVQSEDEASRMGSD 806


>ref|XP_004300521.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Fragaria vesca subsp. vesca]
          Length = 820

 Score = 1090 bits (2820), Expect = 0.0
 Identities = 584/833 (70%), Positives = 656/833 (78%), Gaps = 14/833 (1%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSSPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPNSLD 4181
            EMPLRNSLPL S S  S+++L  P    SF IL+ FS+L+TTEH    N+R    P+S  
Sbjct: 10   EMPLRNSLPLTSHSPSSLHLLLKP----SFRILKPFSALRTTEHGGNPNARHKSKPSS-- 63

Query: 4180 DQNPKPLSHKTPKSTSAPWLNKWPS--------PTPLTNHNSVESNGREK---NAGGYVG 4034
                         S++APWLNKWPS        P    +    ES+GREK   NA  YV 
Sbjct: 64   ------------SSSTAPWLNKWPSRGQAPAEPPRQKFSDRVKESDGREKPSSNAARYVD 111

Query: 4033 KDRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSM-RPTGDEKLGDLLQR 3857
            KD+G+S+IERIV RLRN                         DSM   +G EKLGDLLQR
Sbjct: 112  KDKGQSAIERIVFRLRNLGLGDDEEEEESGDGVEL-------DSMPAASGAEKLGDLLQR 164

Query: 3856 EWVRPDYVLAEEKSDDEMALPWERDDXXXXXXXXXXXXGMRK-RRVRAPTLAELTVEDEE 3680
            EWVRPDY+LAEEK DD++ALPWE+++             MRK RR +AP+LAELT+EDEE
Sbjct: 165  EWVRPDYILAEEKGDDDVALPWEKEEEELSEDEEVKG--MRKARRSKAPSLAELTIEDEE 222

Query: 3679 LRRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVE 3500
            LRRLRR+GM +RERIS+PKAG+TQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVE
Sbjct: 223  LRRLRRLGMVLRERISVPKAGITQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVE 282

Query: 3499 RRTGGLVIWRSGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATS 3320
            RRTGGLV+WRSGSVMVVYRGS Y+GPSK++P  R  DALFIPDVS+AE  + R G DATS
Sbjct: 283  RRTGGLVLWRSGSVMVVYRGSNYKGPSKSEPAGRGGDALFIPDVSSAETSVTRGGNDATS 342

Query: 3319 NLEKSEPAA-INRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDY 3143
              +K+E A  I     + MT EEAEFNSLLD+LGPRFVE+WGTG+LPVDADLLP+ +P Y
Sbjct: 343  APDKTEQAVKIPEPLPKKMTDEEAEFNSLLDELGPRFVEYWGTGILPVDADLLPKTIPGY 402

Query: 3142 KTPFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAK 2963
            KTPFRLLPTGMRSRLTN EMTNLRK+AKSIPCHFALGRNRNHQGLA AILK+WEKS VAK
Sbjct: 403  KTPFRLLPTGMRSRLTNAEMTNLRKLAKSIPCHFALGRNRNHQGLASAILKVWEKSSVAK 462

Query: 2962 IAVKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAK 2783
            IAVKRGIQNTNNK+MAEELK LTGGVLLLRNKYYIVIYRGKDF+PTTVA ALAERQ+L K
Sbjct: 463  IAVKRGIQNTNNKIMAEELKALTGGVLLLRNKYYIVIYRGKDFVPTTVATALAERQELTK 522

Query: 2782 QVQDVEEKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQ 2603
            QVQDVEE VR++ +         DA  SS E GQALAGTLAEFYEAQARWGREI+AEER+
Sbjct: 523  QVQDVEEIVRIKPI---------DAAASSTEEGQALAGTLAEFYEAQARWGREISAEERK 573

Query: 2602 KMIEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEER 2423
            KMIEEDS AK  RR KRIEHKL +AQAKKLRAE LL KIE++M+PAGPDYDQETITDEER
Sbjct: 574  KMIEEDSKAKMARRAKRIEHKLGVAQAKKLRAESLLNKIESAMLPAGPDYDQETITDEER 633

Query: 2422 VMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEY 2243
            VMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTL+FVED+ARLLEY
Sbjct: 634  VMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDSARLLEY 693

Query: 2242 ESGGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHI 2063
            ESGGILVAIERVPKG+ALIYYRGKNY+RPI++RPRNLLTKAKALKRSVAMQRHEALSQHI
Sbjct: 694  ESGGILVAIERVPKGYALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAMQRHEALSQHI 753

Query: 2062 SDLESTIEQMRNEIGVSQDVEEENVACLKDRKHIDDALDSITDEDEASDLDSD 1904
             +LE TIEQMR+EIG+S+DV+ E     +D        +    EDE SD++SD
Sbjct: 754  EELERTIEQMRSEIGISEDVDNERTWGSRDPHQSGHDSEFNQSEDEDSDMESD 806


>ref|XP_009347186.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Pyrus x bretschneideri]
          Length = 832

 Score = 1087 bits (2811), Expect = 0.0
 Identities = 573/832 (68%), Positives = 658/832 (79%), Gaps = 13/832 (1%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSSPSINILFSPPKPSSFHILRTFSS-LKTTEHSDRRNSRTNRFPNSL 4184
            EMPLRNSLPL S S  S+++LFS PKPS F I++TFSS ++TTEH    N+         
Sbjct: 10   EMPLRNSLPLTSHSPSSLSLLFSAPKPS-FRIVKTFSSSVRTTEHGGNPNA--------- 59

Query: 4183 DDQNPKPLSHKTPKSTSAPWLNKWPS-------PTPLTNHNSVESNGREKNAGG----YV 4037
                 KP  HK+  ++ APWLNKWP+       P    N+   ES GREK+       Y 
Sbjct: 60   -----KPPQHKSRPASPAPWLNKWPNRSSPAELPRQNVNNKVNESQGREKDGKADSTRYF 114

Query: 4036 GKDRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMR-PTGDEKLGDLLQ 3860
             KD+G+++IERIV RLRN                        QDS+   +G+EKLGDLLQ
Sbjct: 115  DKDKGQNAIERIVFRLRNLGLGSDDEGEDDGIGLDG------QDSVPVASGEEKLGDLLQ 168

Query: 3859 REWVRPDYVLAEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEE 3680
            REWVRPDYVL EEKS DE+ALPWE+++             +RKRR +AP+LAELT+EDEE
Sbjct: 169  REWVRPDYVLEEEKSADEVALPWEKEEEEEVNDKEEVKG-LRKRRGKAPSLAELTIEDEE 227

Query: 3679 LRRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVE 3500
            L+RLRRMGM +RERIS+PKAG+TQAVLEKIHD WRK ELVRLKFHEVLA DMKTAHEIVE
Sbjct: 228  LKRLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKTELVRLKFHEVLALDMKTAHEIVE 287

Query: 3499 RRTGGLVIWRSGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATS 3320
            RRTGGLV+WRSGSVMVVYRGS Y+GPS++Q +  ER  LFIPDVS+AE  + RSG DATS
Sbjct: 288  RRTGGLVLWRSGSVMVVYRGSNYKGPSQSQTVDGERGGLFIPDVSSAETSVTRSGNDATS 347

Query: 3319 NLEKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYK 3140
              + +E A     R  NMT EEAEF+SLLDDLGPRF EWWGTGVLPVDADLLP+ +P YK
Sbjct: 348  GPDNTEQALKIPERVHNMTEEEAEFHSLLDDLGPRFEEWWGTGVLPVDADLLPKTIPGYK 407

Query: 3139 TPFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKI 2960
            TPFRLLPTGMRSRLTN EMT LRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS VAKI
Sbjct: 408  TPFRLLPTGMRSRLTNAEMTTLRKLAKSLPCHFALGRNRNHQGLALAIIKLWEKSSVAKI 467

Query: 2959 AVKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQ 2780
            AVKRGIQNTNNKLMAEE+K LTGGVLLLRNKYYIVIYRGKDFLPT+VAAALAERQ+L KQ
Sbjct: 468  AVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQELTKQ 527

Query: 2779 VQDVEEKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQK 2600
            VQDVEEK+R++          +DA  +    GQALAGTLAEFYEAQARWGREI+AEER++
Sbjct: 528  VQDVEEKMRIK---------AIDAASTGAVEGQALAGTLAEFYEAQARWGREISAEERER 578

Query: 2599 MIEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERV 2420
            MIEEDS AKN + V+RIEHKL +AQAKKLRAE+LL+KIE+ M+PAGPDYDQETITDEERV
Sbjct: 579  MIEEDSRAKNAKLVRRIEHKLGVAQAKKLRAEKLLSKIESLMLPAGPDYDQETITDEERV 638

Query: 2419 MFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYE 2240
            MFRRVGLRMKAYLPLGIRGVFDGV+ENMHLHWKHRELVKLISKQKTL+FVEDTARLLEYE
Sbjct: 639  MFRRVGLRMKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYE 698

Query: 2239 SGGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHIS 2060
            SGGILVAIERVPKG+ALIYYRGKNY+RPI++RPRNLLTKAKALKRSVAMQRHEALSQHIS
Sbjct: 699  SGGILVAIERVPKGYALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAMQRHEALSQHIS 758

Query: 2059 DLESTIEQMRNEIGVSQDVEEENVACLKDRKHIDDALDSITDEDEASDLDSD 1904
            +LE  IEQM++++G+S+D  +E+    +D + I  AL+ +  EDE  D D D
Sbjct: 759  ELEKNIEQMKSQVGISEDDVDESSWSSRDPEQIHRALELVQSEDEDEDEDED 810


>ref|XP_008374754.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
          Length = 827

 Score = 1080 bits (2794), Expect = 0.0
 Identities = 573/832 (68%), Positives = 655/832 (78%), Gaps = 13/832 (1%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSSPSINILFSPPKPSSFHILRTFSS-LKTTEHSDRRNSRTNRFPNSL 4184
            EMPLRNSLPL S S  S ++    PKPS F I++TFSS ++TTEH    N+         
Sbjct: 10   EMPLRNSLPLTSHSPSSFSLA---PKPS-FRIVKTFSSSVRTTEHGGNPNA--------- 56

Query: 4183 DDQNPKPLSHKTPKSTSAPWLNKWPS-------PTPLTNHNSVESNGREKNAGG----YV 4037
                 KP  HK+  ++ APWLNKWP+       P    N    ES GRE++       Y 
Sbjct: 57   -----KPPQHKSRPASPAPWLNKWPNRSSPAELPRQKVNEKVNESQGREQDGKADSTRYF 111

Query: 4036 GKDRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSM-RPTGDEKLGDLLQ 3860
             K++G+S+IERIV RLRN                        QDS+   +G+EKLGDLLQ
Sbjct: 112  DKNKGQSAIERIVFRLRNLRLGSDDEEEDDGIGLDG------QDSVPAASGEEKLGDLLQ 165

Query: 3859 REWVRPDYVLAEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEE 3680
            REWVRPDYVL EEKS DE+ALPWE+++             +RKRR +AP+LAELT+EDEE
Sbjct: 166  REWVRPDYVLEEEKSADEVALPWEKEEEEEVNDKEEVKG-LRKRRGKAPSLAELTIEDEE 224

Query: 3679 LRRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVE 3500
            L+RLRRMGM +RERIS+PKAG+TQAVLEKIHD WRK ELVRLKFHEVLA DMKTAHEIVE
Sbjct: 225  LKRLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKTELVRLKFHEVLALDMKTAHEIVE 284

Query: 3499 RRTGGLVIWRSGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATS 3320
            RRTGGLV+WRSGSVMVVYRGS Y+GPS++Q +  ER  LFIPDVS+AE  ++RSG DATS
Sbjct: 285  RRTGGLVLWRSGSVMVVYRGSNYKGPSQSQTVDGERGGLFIPDVSSAETSVMRSGNDATS 344

Query: 3319 NLEKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYK 3140
              +K+E A     R  NMT EEAEF+SLLDDLGPRF EWWGTGVLPVDADLLP+ +P YK
Sbjct: 345  GPDKTEQALKIPERVHNMTEEEAEFHSLLDDLGPRFEEWWGTGVLPVDADLLPKTIPGYK 404

Query: 3139 TPFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKI 2960
            TPFRLLPTGMRSRLTN EMT LRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS VAKI
Sbjct: 405  TPFRLLPTGMRSRLTNAEMTTLRKLAKSLPCHFALGRNRNHQGLALAIIKLWEKSSVAKI 464

Query: 2959 AVKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQ 2780
            AVKRGIQNTNNKLMAEE+K LTGGVLLLRNKYYIVIYRGKDFLPT+VAAALAERQ+L KQ
Sbjct: 465  AVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQELTKQ 524

Query: 2779 VQDVEEKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQK 2600
            VQDVEEK+R++          +DA  S    GQALAGTLAEFYEAQARWGREI+AEER+K
Sbjct: 525  VQDVEEKMRIK---------AIDAASSGAVEGQALAGTLAEFYEAQARWGREISAEEREK 575

Query: 2599 MIEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERV 2420
            MIEEDS AKN + V+RIEHKL +AQAKKLRAE+LL+KIE+ M+PAGPDYDQETITDEERV
Sbjct: 576  MIEEDSRAKNAKLVRRIEHKLGVAQAKKLRAEKLLSKIESLMLPAGPDYDQETITDEERV 635

Query: 2419 MFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYE 2240
            MFRRVGLRMKAYLPLGIRGVFDGV+ENMHLHWKHRELVKLISKQKTL+FVEDTARLLEYE
Sbjct: 636  MFRRVGLRMKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYE 695

Query: 2239 SGGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHIS 2060
            SGGILVAIERVPKG+ALIYYRGKNYRRPI++RPRNLLTKAKALKRSVAMQRHEALSQHIS
Sbjct: 696  SGGILVAIERVPKGYALIYYRGKNYRRPITLRPRNLLTKAKALKRSVAMQRHEALSQHIS 755

Query: 2059 DLESTIEQMRNEIGVSQDVEEENVACLKDRKHIDDALDSITDEDEASDLDSD 1904
            +LE  IEQM++++G+S+D  +E+    +D + I  AL+ +  EDE  D D D
Sbjct: 756  ELEKNIEQMKSQVGISEDDVDESSWSSRDPEQIHRALELVQSEDEDEDEDED 807


>ref|XP_009360154.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Pyrus x bretschneideri]
          Length = 824

 Score = 1073 bits (2774), Expect = 0.0
 Identities = 573/838 (68%), Positives = 658/838 (78%), Gaps = 17/838 (2%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSSPSINILFSPPKPSSFHILRTFSS-LKTTEHSDRRNSRTNRFPNSL 4184
            EMPL NSLP  S S  S+ +LFS PKPS F I++TFSS + TTEH    N+         
Sbjct: 10   EMPLMNSLPPTSHSPSSLRLLFSAPKPS-FRIVKTFSSTVGTTEHGGSANA--------- 59

Query: 4183 DDQNPKPLSHKTPKSTSAPWLNKWP---SPTPLT----NHNSVESNGREKNAGG--YVGK 4031
                 KP  HK+  ++SAPWLNKWP   SP  L     N    ES+ ++  A    Y  K
Sbjct: 60   -----KPPQHKSRPASSAPWLNKWPNRSSPAELARQKVNDKVKESHEQDGKADTTRYFDK 114

Query: 4030 DRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSM-RPTGDEKLGDLLQRE 3854
            D+G+S+IERIVLRLRN                        QD +   +G+EKLGDLLQRE
Sbjct: 115  DKGQSAIERIVLRLRNLGLGSDDEEEDDGIELDG------QDPVPAASGEEKLGDLLQRE 168

Query: 3853 WVRPDYVLAEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEELR 3674
            WVRPDYVL EEKS DE+ALPWE+++             + KRR +AP+LAELT+EDEEL+
Sbjct: 169  WVRPDYVLEEEKSGDEVALPWEKEEKVSDKEEVKG---LSKRRGKAPSLAELTIEDEELK 225

Query: 3673 RLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVERR 3494
            RLRRMGM +RERIS+PKAG+TQAVLEKIHD WRK ELVRLKFHEVLA DMKTAHEIVERR
Sbjct: 226  RLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKTELVRLKFHEVLALDMKTAHEIVERR 285

Query: 3493 TGGLVIWRSGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATSNL 3314
            TGGLV+WRSGSVMVVYRGS Y+GPS++Q +  ER  LFIP++S+ E   +RSG +ATS  
Sbjct: 286  TGGLVLWRSGSVMVVYRGSNYKGPSQSQTVDGERSGLFIPEISSPETSEMRSGNEATSGP 345

Query: 3313 EKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYKTP 3134
            +K+E A     R  NMT EEAEF+SLLDDLGPRFVEWWGTGVLPVDADLLP+ +P YKTP
Sbjct: 346  DKTEQALKIPERVHNMTEEEAEFHSLLDDLGPRFVEWWGTGVLPVDADLLPKTIPGYKTP 405

Query: 3133 FRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAV 2954
            FRLLPTGMRSRLTN EMT LRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS VAKIAV
Sbjct: 406  FRLLPTGMRSRLTNAEMTTLRKLAKSLPCHFALGRNRNHQGLALAIIKLWEKSSVAKIAV 465

Query: 2953 KRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQVQ 2774
            KRGIQNTNNKLMAEE+K LTGGVLLLRNKYYIVIYRGKDF+PT+VAAAL+ERQ+L KQVQ
Sbjct: 466  KRGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFVPTSVAAALSERQELTKQVQ 525

Query: 2773 DVEEKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQKMI 2594
            DVEEK+R++          +DA  S    GQALAGTLAEFYEAQARWGREI+AEER+KMI
Sbjct: 526  DVEEKMRIK---------AIDAASSGAVEGQALAGTLAEFYEAQARWGREISAEEREKMI 576

Query: 2593 EEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERVMF 2414
            EEDS AKN + V+RIEHKL +AQAKKLRAE+LL+KIE+ M+PAGPDYDQETITDEERVMF
Sbjct: 577  EEDSRAKNAKLVRRIEHKLGVAQAKKLRAEKLLSKIESLMLPAGPDYDQETITDEERVMF 636

Query: 2413 RRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYESG 2234
            RRVGLRMKAYLPLGIRGVFDGV+ENMHLHWKHRELVKLISKQKTL+FVEDTARLLEYESG
Sbjct: 637  RRVGLRMKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESG 696

Query: 2233 GILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHISDL 2054
            GILVAIERVPKG+ALIYYRGKNYRRPI++RPRNLLTKAKALKRSVAMQRHEALSQHIS+L
Sbjct: 697  GILVAIERVPKGYALIYYRGKNYRRPITLRPRNLLTKAKALKRSVAMQRHEALSQHISEL 756

Query: 2053 ESTIEQMRNEIGVSQDVEEENVACLKDRKHIDDALDSI------TDEDEASDLDSDYN 1898
            E  IEQM++++G+S+D  +E+    +D + I  AL+ +       DEDE S +DSD N
Sbjct: 757  EKNIEQMKSQVGISEDDVDESSWSSRDPEQIHRALELVQSEGEDEDEDEDSYVDSDGN 814


>ref|XP_008393315.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
          Length = 813

 Score = 1068 bits (2762), Expect = 0.0
 Identities = 567/820 (69%), Positives = 652/820 (79%), Gaps = 13/820 (1%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSSPSINILFSPPKPSSFHILRTFSS-LKTTEHSDRRNSRTNRFPNSL 4184
            EMPLR+SLPL S S  S+ +LFS PKP SF I++TFSS ++TTEH    N+         
Sbjct: 10   EMPLRSSLPLTSHSPSSLRLLFSAPKP-SFRIVKTFSSTVRTTEHGGSANA--------- 59

Query: 4183 DDQNPKPLSHKTPKSTSAPWLNKWP---SPTPL----TNHNSVESNGREKNAGG----YV 4037
                 KP  HK+  ++SAPWLNKWP   SPT L     N    ES+GRE++       Y 
Sbjct: 60   -----KPPQHKSRPASSAPWLNKWPNRSSPTELPRQKVNDKVSESHGREQDGKADTTRYF 114

Query: 4036 GKDRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSM-RPTGDEKLGDLLQ 3860
             KD+G+S+IERIVLRLRN                       GQD +    G+EKLGDLLQ
Sbjct: 115  DKDKGQSAIERIVLRLRN------LGLGSDDEEZDDGIGLDGQDPVPAAXGEEKLGDLLQ 168

Query: 3859 REWVRPDYVLAEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEE 3680
            REWVRPDYVL EEKS DE+ALPWE+++            G+RKRR +AP+LAELT+EDEE
Sbjct: 169  REWVRPDYVLEEEKSGDEVALPWEKEE---EVSDKEEVKGLRKRRGKAPSLAELTIEDEE 225

Query: 3679 LRRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVE 3500
            L+RLRRMGM +RERIS+PKAG+TQAVLEKIHD WRK ELVRLKFHEVLA DMKTAHEIVE
Sbjct: 226  LKRLRRMGMVLRERISVPKAGITQAVLEKIHDMWRKTELVRLKFHEVLALDMKTAHEIVE 285

Query: 3499 RRTGGLVIWRSGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATS 3320
            RR GGLV+WRSGSVMVVYRGS Y+GPS++Q +   R  LFIP++S+ E   +RSG +ATS
Sbjct: 286  RRXGGLVLWRSGSVMVVYRGSNYKGPSQSQTVDGXRSGLFIPEISSPETSEMRSGNEATS 345

Query: 3319 NLEKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYK 3140
              +K+E A     R  NMT EEAEF+SLLDDLGPRFVEWWGTGVLPVDADLLP+ +P YK
Sbjct: 346  GPDKTEQALKIPERVHNMTEEEAEFHSLLDDLGPRFVEWWGTGVLPVDADLLPKTIPGYK 405

Query: 3139 TPFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKI 2960
            TPFRLLPTGMRSRLTN E T LRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS VAKI
Sbjct: 406  TPFRLLPTGMRSRLTNAEXTTLRKLAKSLPCHFALGRNRNHQGLALAIIKLWEKSSVAKI 465

Query: 2959 AVKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQ 2780
            AVKRGIQNTNNKLMAEE+K LTGGVLLLRNKYYIVIYRGKDF+PT+VAAAL+ERQ+L KQ
Sbjct: 466  AVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFVPTSVAAALSERQELTKQ 525

Query: 2779 VQDVEEKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQK 2600
            VQDVEEKVR++          +DA  S    GQALAGTLAEFYEAQARWGREI+AEER+K
Sbjct: 526  VQDVEEKVRIK---------AIDAASSGAVEGQALAGTLAEFYEAQARWGREISAEEREK 576

Query: 2599 MIEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERV 2420
            MIEEDS AKN + V+RIEHKL +AQAKKLRAE+LL+KIE+ M+PAGPDYDQETITDEERV
Sbjct: 577  MIEEDSRAKNAKLVRRIEHKLGVAQAKKLRAEKLLSKIESLMLPAGPDYDQETITDEERV 636

Query: 2419 MFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYE 2240
            MFRRVGLRMKAYLPLGIRGVFDGV+ENMHLHWKHRELVKLISKQKTL+FVEDTARLLEYE
Sbjct: 637  MFRRVGLRMKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYE 696

Query: 2239 SGGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHIS 2060
            SGGILVAIERVPKG+ALIYYRGKNYRRPI++RPRNLLTKAKALKRSVAMQRHEALSQHIS
Sbjct: 697  SGGILVAIERVPKGYALIYYRGKNYRRPITLRPRNLLTKAKALKRSVAMQRHEALSQHIS 756

Query: 2059 DLESTIEQMRNEIGVSQDVEEENVACLKDRKHIDDALDSI 1940
            +LE  IEQM++++G+S+D  +++    +D + I  A + +
Sbjct: 757  ELEKNIEQMKSQVGISEDDVDDSSWSSRDPEQIHRASELV 796


>ref|XP_007036533.1| CRS1 / YhbY domain-containing protein [Theobroma cacao]
            gi|508773778|gb|EOY21034.1| CRS1 / YhbY domain-containing
            protein [Theobroma cacao]
          Length = 919

 Score = 1054 bits (2726), Expect = 0.0
 Identities = 566/827 (68%), Positives = 644/827 (77%), Gaps = 6/827 (0%)
 Frame = -3

Query: 4366 FYEMPLRNSLPLASRS----SPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNR 4199
            F EMPLR SLP AS S    S S+N+ FS PKPS F   R FSSL+T    +  +S+ NR
Sbjct: 73   FTEMPLRTSLPFASYSYSYSSSSLNLFFSAPKPS-FRFFRPFSSLRT---GNSPSSKFNR 128

Query: 4198 FPNSLDDQNPKPLSHKTPKSTSAPWLNKWPSPTPLTNHNSVESNGREKN--AGGYVGKDR 4025
            +    D +   P +     S S+  L  W SP+       ++S+G +K      Y  +D+
Sbjct: 129  YSYPWDQEASVPPN----SSASSSSLQAWSSPS----QKVIQSDGDDKTDVETRYFDRDK 180

Query: 4024 GKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQREWVR 3845
             +S+IERIVLRLRN                         +S   TG+E+LGDLL+REWVR
Sbjct: 181  SQSAIERIVLRLRNLGLGSDDEDEGEDETDQY-------NSTPVTGEERLGDLLKREWVR 233

Query: 3844 PDYVLAEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEELRRLR 3665
            PD +L E + + E  LPWERD+             ++KRRVRAPTLAELT+EDEELRRLR
Sbjct: 234  PDTMLIEREKE-EAVLPWERDEAEVEVVKEGVLG-VKKRRVRAPTLAELTIEDEELRRLR 291

Query: 3664 RMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVERRTGG 3485
            RMGM++RERI++PKAG+TQAVLEKIHDKWRKEELVRLKFHEVLA DMKTAHEIVERRTGG
Sbjct: 292  RMGMYLRERINVPKAGITQAVLEKIHDKWRKEELVRLKFHEVLATDMKTAHEIVERRTGG 351

Query: 3484 LVIWRSGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATSNLEKS 3305
            LV+WRSGSVMVVYRGS YEGPS++Q I RE +ALFIPDVS+A + +  S T  TS  EK 
Sbjct: 352  LVLWRSGSVMVVYRGSNYEGPSRSQSIDREGEALFIPDVSSASNAVRGSETGKTSTPEKC 411

Query: 3304 EPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYKTPFRL 3125
            EP  +   R+++MT EEAE+NSLLD +GPRFVEWWGTGVLPVDADLLPQK+P YKTPFRL
Sbjct: 412  EPVVVKPERSESMTEEEAEYNSLLDGVGPRFVEWWGTGVLPVDADLLPQKIPGYKTPFRL 471

Query: 3124 LPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRG 2945
            LP GMR RLTN EMTNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKSLV KIAVKRG
Sbjct: 472  LPAGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVVKIAVKRG 531

Query: 2944 IQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQVQDVE 2765
            IQNTNNKLMAEELK LTGGVLLLRNKY+IVIYRGKDFLPT+VAAALAERQ+L KQ+QDVE
Sbjct: 532  IQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTSVAAALAERQELTKQIQDVE 591

Query: 2764 EKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQKMIEED 2585
            EKVR++ VE            S E+ G+A AGTLAEFYEAQA WGREI+AEER+KMIEE 
Sbjct: 592  EKVRIRAVE---------PAQSGEDKGEAPAGTLAEFYEAQACWGREISAEEREKMIEEA 642

Query: 2584 SMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERVMFRRV 2405
            S AK+ R VKR+EHKLA+AQAKKLRAERLLAKIE+SMIPA PDYDQETITDEERVMFRRV
Sbjct: 643  SKAKHARLVKRVEHKLAVAQAKKLRAERLLAKIESSMIPAAPDYDQETITDEERVMFRRV 702

Query: 2404 GLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYESGGIL 2225
            GLRMK YLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTL+FVEDTARLLE+ESGGIL
Sbjct: 703  GLRMKPYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEFESGGIL 762

Query: 2224 VAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHISDLEST 2045
            VAIERVPKG+ALIYYRGKNY RPIS+RPRNLLTKAKALKRSVAMQRHEALSQHIS+LE T
Sbjct: 763  VAIERVPKGYALIYYRGKNYHRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISELERT 822

Query: 2044 IEQMRNEIGVSQDVEEENVACLKDRKHIDDALDSITDEDEASDLDSD 1904
            IE+M+ EIG SQDVE+E+     +    D   +    EDEAS + SD
Sbjct: 823  IEEMKKEIGASQDVEDEDSQVSGEHGQFDPVSELTQSEDEASYMASD 869


>ref|XP_010663603.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Vitis vinifera]
          Length = 833

 Score = 1047 bits (2707), Expect = 0.0
 Identities = 549/838 (65%), Positives = 637/838 (76%), Gaps = 3/838 (0%)
 Frame = -3

Query: 4336 PLASRSSPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPNSLDDQNPKPLS 4157
            P  S SS S++ LF P  P S  +L+ FSSL+TT+ ++ RN +T R     D QN +  S
Sbjct: 12   PFTSHSS-SLHFLF-PKTPLS--LLKPFSSLRTTDSNNLRNRKTKRSLYPWDHQNSRKSS 67

Query: 4156 HKTPKSTSAPWLNKWPSPTPL--TNHNSVESNGREKNAGGYVGKDRGKSSIERIVLRLRN 3983
            +  P S++  W+NKWPSP P   + H  ++S GR+     Y     G S+IERIVLRLRN
Sbjct: 68   NTNPNSSTKSWINKWPSPNPSIESEHKGIDSKGRDGTESRYFDGRSGTSAIERIVLRLRN 127

Query: 3982 XXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQREWVRPDYVLAEEKSDDEM 3803
                                     D+M  TGDEKLGDLLQR+WVRPD +L E++ +D+M
Sbjct: 128  LGLGSDDEDKNEGEVESG-------DTMPVTGDEKLGDLLQRDWVRPDSMLIEDEDEDDM 180

Query: 3802 ALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEELRRLRRMGMFVRERISIPK 3623
             LPWER +             +++R VRAPTLAELT+EDEELRRLRR+GM +RERI++PK
Sbjct: 181  ILPWERGEERQEEEGDGR---LKRRAVRAPTLAELTIEDEELRRLRRLGMTIRERINVPK 237

Query: 3622 AGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWRSGSVMVVYR 3443
            AG+TQAVL KIH+KWRKEELVRLKFHE LAHDMKTAHEIVERRTGGLV WRSGSVMVV+R
Sbjct: 238  AGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGSVMVVFR 297

Query: 3442 GSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATSNLEKSEPAAINRYRNQNMT 3263
            G+ YEGP K QP+  E D+LF+PDVS+ ++P +R+  +    LEK      N    +NMT
Sbjct: 298  GTNYEGPPKPQPVDGEGDSLFVPDVSSVDNPAMRNDNNGGPTLEKGSLPVRNPVHAENMT 357

Query: 3262 AEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYKTPFRLLPTGMRSRLTNGEM 3083
             EEAE+NSLLD LGPRFV+WWGTGVLPVD DLLPQ +P YKTP R+LPTGMR RLTN EM
Sbjct: 358  EEEAEYNSLLDGLGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEM 417

Query: 3082 TNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELK 2903
            TNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS+V KIAVK GIQNTNNKLMAEE+K
Sbjct: 418  TNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIK 477

Query: 2902 MLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQVQDVEEKVRVQDVEEKLRN 2723
             LTGGVLLLRNKYYIVIYRGKDFLPT+VAAAL+ER++L K +Q VEEKV         R 
Sbjct: 478  NLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKV---------RT 528

Query: 2722 GVVDAVPSSEEG-GQALAGTLAEFYEAQARWGREITAEERQKMIEEDSMAKNVRRVKRIE 2546
            G  +A+PS E+G GQ LAGTLAEFYEAQARWGREI+AEE +KMIEE S AK+ R VKRIE
Sbjct: 529  GGAEAIPSGEDGVGQPLAGTLAEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKRIE 588

Query: 2545 HKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERVMFRRVGLRMKAYLPLGIR 2366
            HKLA+AQAKKLRAERLLAKIEASMIPAGP  DQETITDEER MFRR+GLRMKAYL LG+R
Sbjct: 589  HKLALAQAKKLRAERLLAKIEASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLGVR 648

Query: 2365 GVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYESGGILVAIERVPKGFALI 2186
            GVFDGVIENMHLHWKHRELVKLISKQKTL+FVEDTARLLEYESGGILVAIERVPKG+ALI
Sbjct: 649  GVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALI 708

Query: 2185 YYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHISDLESTIEQMRNEIGVSQD 2006
            YYRGKNYRRP+S+RPRNLLTKAKALKRSVAMQRHEALSQHIS+LE TIEQM+ EIG S+D
Sbjct: 709  YYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEALSQHISELERTIEQMKMEIGDSKD 768

Query: 2005 VEEENVACLKDRKHIDDALDSITDEDEASDLDSDYNXXXXXXXXXXXX*NFSCFEKHE 1832
             E+++    +     D   +    EDEAS +DSD +               S F+ H+
Sbjct: 769  AEDKDSWSTEGHGQFDQVSEVSKSEDEASGMDSDADDVEDIDWKDDEESGISRFKNHD 826


>ref|XP_010663604.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Vitis vinifera]
            gi|297734212|emb|CBI15459.3| unnamed protein product
            [Vitis vinifera]
          Length = 830

 Score = 1045 bits (2702), Expect = 0.0
 Identities = 550/838 (65%), Positives = 638/838 (76%), Gaps = 3/838 (0%)
 Frame = -3

Query: 4336 PLASRSSPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPNSLDDQNPKPLS 4157
            P  S SS S++ LF P  P S  +L+ FSSL+TT+ ++ RN +T R     D QN +  S
Sbjct: 12   PFTSHSS-SLHFLF-PKTPLS--LLKPFSSLRTTDSNNLRNRKTKRSLYPWDHQNSRKSS 67

Query: 4156 HKTPKSTSAPWLNKWPSPTPL--TNHNSVESNGREKNAGGYVGKDRGKSSIERIVLRLRN 3983
            +  P S++  W+NKWPSP P   + H  ++S GR+     Y     G S+IERIVLRLRN
Sbjct: 68   NTNPNSSTKSWINKWPSPNPSIESEHKGIDSKGRDGTESRYFDGRSGTSAIERIVLRLRN 127

Query: 3982 XXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQREWVRPDYVLAEEKSDDEM 3803
                                     D+M  TGDEKLGDLLQR+WVRPD +L E++ +D+M
Sbjct: 128  LGLGSDDEDKNEGEVESG-------DTMPVTGDEKLGDLLQRDWVRPDSMLIEDEDEDDM 180

Query: 3802 ALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEELRRLRRMGMFVRERISIPK 3623
             LPWER +             +++R VRAPTLAELT+EDEELRRLRR+GM +RERI++PK
Sbjct: 181  ILPWERGEERQEEEGDGR---LKRRAVRAPTLAELTIEDEELRRLRRLGMTIRERINVPK 237

Query: 3622 AGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWRSGSVMVVYR 3443
            AG+TQAVL KIH+KWRKEELVRLKFHE LAHDMKTAHEIVERRTGGLV WRSGSVMVV+R
Sbjct: 238  AGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGSVMVVFR 297

Query: 3442 GSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATSNLEKSEPAAINRYRNQNMT 3263
            G+ YEGP K QP+  E D+LF+PDVS+ ++P +R+  +    LEK      N    +NMT
Sbjct: 298  GTNYEGPPKPQPVDGEGDSLFVPDVSSVDNPAMRNDNNGGPTLEKGSLPVRNPVHAENMT 357

Query: 3262 AEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYKTPFRLLPTGMRSRLTNGEM 3083
             EEAE+NSLLD LGPRFV+WWGTGVLPVD DLLPQ +P YKTP R+LPTGMR RLTN EM
Sbjct: 358  EEEAEYNSLLDGLGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEM 417

Query: 3082 TNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELK 2903
            TNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS+V KIAVK GIQNTNNKLMAEE+K
Sbjct: 418  TNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIK 477

Query: 2902 MLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQVQDVEEKVRVQDVEEKLRN 2723
             LTGGVLLLRNKYYIVIYRGKDFLPT+VAAAL+ER++L K +Q VEEKV         R 
Sbjct: 478  NLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKV---------RT 528

Query: 2722 GVVDAVPSSEEG-GQALAGTLAEFYEAQARWGREITAEERQKMIEEDSMAKNVRRVKRIE 2546
            G  +A+PS E+G GQ LAGTLAEFYEAQARWGREI+AEE +KMIEE S AK+ R VKRIE
Sbjct: 529  GGAEAIPSGEDGVGQPLAGTLAEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKRIE 588

Query: 2545 HKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERVMFRRVGLRMKAYLPLGIR 2366
            HKLA+AQAKKLRAERLLAKIEASMIPAGP  DQETITDEER MFRR+GLRMKAYL LG+R
Sbjct: 589  HKLALAQAKKLRAERLLAKIEASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLGVR 648

Query: 2365 GVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYESGGILVAIERVPKGFALI 2186
            GVFDGVIENMHLHWKHRELVKLISKQKTL+FVEDTARLLEYESGGILVAIERVPKG+ALI
Sbjct: 649  GVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALI 708

Query: 2185 YYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHISDLESTIEQMRNEIGVSQD 2006
            YYRGKNYRRP+S+RPRNLLTKAKALKRSVAMQRHEALSQHIS+LE TIEQM+ EIG S+D
Sbjct: 709  YYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEALSQHISELERTIEQMKMEIGDSKD 768

Query: 2005 VEEENVACLKDRKHIDDALDSITDEDEASDLDSDYNXXXXXXXXXXXX*NFSCFEKHE 1832
             E+++    +     D   +S   EDEAS +DSD +               S F+ H+
Sbjct: 769  AEDKDSWSTEGHGQFDQVSES---EDEASGMDSDADDVEDIDWKDDEESGISRFKNHD 823


>emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
          Length = 850

 Score = 1039 bits (2686), Expect = 0.0
 Identities = 550/855 (64%), Positives = 638/855 (74%), Gaps = 20/855 (2%)
 Frame = -3

Query: 4336 PLASRSSPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPNSLDDQNPKPLS 4157
            P  S SS S++ LF P  P S  +L+ FSSL+TT+ ++ RN +T R     D QN +  S
Sbjct: 12   PFTSHSS-SLHFLF-PKTPLS--LLKPFSSLRTTDSNNLRNRKTKRSLYPWDHQNSRKSS 67

Query: 4156 HKTPKSTSAPWLNKWPSPTPL--TNHNSVESNGREKNAGGYVGKDRGKSSIERIVLRLRN 3983
            +  P S++  W+NKWPSP P   + H  ++S GR+     Y     G S+IERIVLRLRN
Sbjct: 68   NTNPNSSTKSWINKWPSPNPSIESEHKGIDSKGRDGTESRYFDGRSGTSAIERIVLRLRN 127

Query: 3982 XXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQREWVRPDYVLAEEKSDDEM 3803
                                     D+M  TGDEKLGDLLQR+WVRPD +L E++ +D+M
Sbjct: 128  LGLGSDDEDKNEGEVESG-------DTMPVTGDEKLGDLLQRDWVRPDSMLIEDEDEDDM 180

Query: 3802 ALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEELRRLRRMGMFVRERISIPK 3623
             LPWER +             +++R VRAPTLAELT+EDEELRRLRR+GM +RERI++PK
Sbjct: 181  ILPWERGEERQEEEGDGR---LKRRAVRAPTLAELTIEDEELRRLRRLGMTIRERINVPK 237

Query: 3622 AGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWRSGSVMVVYR 3443
            AG+TQAVL KIH+KWRKEELVRLKFHE LAHDMKTAHEIVERRTGGLV WRSGSVMVV+R
Sbjct: 238  AGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGSVMVVFR 297

Query: 3442 GSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATSNLEKSEPAAINRYRNQNMT 3263
            G+ YEGP K QP+  E D+LF+PDVS+ ++P +R+  +    LEK      N    +NMT
Sbjct: 298  GTNYEGPPKPQPVDGEGDSLFVPDVSSVDNPAMRNDNNGGPTLEKGSLPVRNPVHAENMT 357

Query: 3262 AEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYKTPFRLLPTGMRSRLTNGEM 3083
             EEAE+NSLLD LGPRFV+WWGTGVLPVD DLLPQ +P YKTP R+LPTGMR RLTN EM
Sbjct: 358  EEEAEYNSLLDGLGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEM 417

Query: 3082 TNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELK 2903
            TNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS+V KIAVK GIQNTNNKLMAEE+K
Sbjct: 418  TNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIK 477

Query: 2902 MLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQVQDVEEKVRVQDVEEKLRN 2723
             LTGGVLLLRNKYYIVIYRGKDFLPT+VAAAL+ER++L K +Q VEEKV         R 
Sbjct: 478  NLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKV---------RT 528

Query: 2722 GVVDAVPSSEEG-GQALAGTLAEFYEAQARWGREITAEERQKMIEEDSMAKNVRRVKRIE 2546
            G  +A+PS E+G GQ LAGTLAEFYEAQARWGREI+AEE +KMIEE S AK+ R VKRIE
Sbjct: 529  GGAEAIPSGEDGVGQPLAGTLAEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKRIE 588

Query: 2545 HKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERVMFRRVGLRMKAYLPLGIR 2366
            HKLA+AQAKKLR ERLLAKIEASMIPAGP  DQETITDEER MFRR+GLRMKAYL LG+R
Sbjct: 589  HKLALAQAKKLRPERLLAKIEASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLGVR 648

Query: 2365 GVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYESGGILVAIERVPKGFALI 2186
            GVFDGVIENMHLHWKHRELVKLISKQKTL+FVEDTARLLEYESGGILVAIERVPKG+ALI
Sbjct: 649  GVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALI 708

Query: 2185 YYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHISDLESTIEQMRNEIGVSQD 2006
            YYRGKNYRRP+S+RPRNLLTKAKALKRSVAMQRHEALSQHIS+LE TIEQM+ EIG S+D
Sbjct: 709  YYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEALSQHISELERTIEQMKMEIGDSKD 768

Query: 2005 VEEENVACLKDRKHIDDALD-----------------SITDEDEASDLDSDYNXXXXXXX 1877
             E+++    +     D   +                 SI  EDEAS +DSD +       
Sbjct: 769  AEDKDSWSTEGHGQFDQVSEVSKVRYSVFCCQIFLVASILSEDEASGMDSDADDVEDIDW 828

Query: 1876 XXXXX*NFSCFEKHE 1832
                    S F+ H+
Sbjct: 829  KDDEESGISRFKNHD 843


>ref|XP_012093011.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Jatropha curcas]
            gi|802797401|ref|XP_012093012.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            [Jatropha curcas] gi|643686960|gb|KDP20125.1|
            hypothetical protein JCGZ_05894 [Jatropha curcas]
          Length = 839

 Score = 1028 bits (2657), Expect = 0.0
 Identities = 556/828 (67%), Positives = 638/828 (77%), Gaps = 9/828 (1%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSSPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPNSLD 4181
            E+PLRNSLPL S S      LFS     SFH L+   S  ++        RTN++PN   
Sbjct: 10   ELPLRNSLPLTSHS------LFSSTSKPSFHSLKKPFSFSSS-------LRTNKYPNP-- 54

Query: 4180 DQNPKPLSHKTPKSTSAPWLNKW--PSPTPLTNHNSV-ESNGREKNAGGYVGKDRGKSSI 4010
             ++P P       S ++PWL+KW  PSP P      V  SNG++K      GK  G+++I
Sbjct: 55   -KSPIP-------SLNSPWLSKWGPPSPAPAPAPRQVARSNGQDKTQFSPEGK--GQNAI 104

Query: 4009 ERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQREWVRPDYVL 3830
            ERIVLRLRN                         D    TGDE+L DLLQREWVRPD + 
Sbjct: 105  ERIVLRLRNLGLGSDDEDDDGEEDKGIDRG----DKAEVTGDERLADLLQREWVRPDTIF 160

Query: 3829 A--EEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEELRRLRRMG 3656
            +  +++  D++ LPW+R +              RKR V+APTLAELT+EDEELRRLR+MG
Sbjct: 161  SNRDDEESDDLVLPWQRKEIEREERGGEGGRE-RKRTVKAPTLAELTIEDEELRRLRKMG 219

Query: 3655 MFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVI 3476
            MFVRERIS+PKAGLT+ VLEKIHDKWRK+ELVRLKFHEVLAHDMKTAHEI ERRTGGLVI
Sbjct: 220  MFVRERISVPKAGLTKDVLEKIHDKWRKQELVRLKFHEVLAHDMKTAHEITERRTGGLVI 279

Query: 3475 WRSGSVMVVYRGSKYEGP-SKTQPIHRERDALFIPDVSAAEDPLLRSGTDATSNLEKSEP 3299
            WR+GSVM+VYRGS YEGP SK Q + +E DALFIPDVS+ +   LR+    +S ++K E 
Sbjct: 280  WRAGSVMMVYRGSNYEGPPSKPQSVDKEGDALFIPDVSSPDTETLRNHDGVSSTVKKREL 339

Query: 3298 AAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYKTPFRLLP 3119
            A       +NMT EEAEFNSLLD LGPRF EWWGTG+LPVDADLLP K+P YKTPFRLLP
Sbjct: 340  AIGRMNSAENMTEEEAEFNSLLDSLGPRFEEWWGTGILPVDADLLPPKIPGYKTPFRLLP 399

Query: 3118 TGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQ 2939
            TGMRSRLTN EMTNLRK+AK++PCHFALGRNRNHQGLA AI K+WEKSLVAKIAVKRGIQ
Sbjct: 400  TGMRSRLTNAEMTNLRKLAKTLPCHFALGRNRNHQGLAAAIRKIWEKSLVAKIAVKRGIQ 459

Query: 2938 NTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQVQDVEEK 2759
            NTNNKLMA+ELKMLTGG+LLLRNKYYIVIYRGKDFLPT+VAAALAERQ+L KQ+QDVEEK
Sbjct: 460  NTNNKLMADELKMLTGGILLLRNKYYIVIYRGKDFLPTSVAAALAERQELTKQIQDVEEK 519

Query: 2758 VRVQDVEEKLRNGVVDAVPSSEEG-GQALAGTLAEFYEAQARWGREITAEERQKMIEEDS 2582
            VR + VE  L          SEEG G+ALAGTLAEFYEAQARWG+ I+AEER+KMIE+ +
Sbjct: 520  VRSRGVETAL----------SEEGQGKALAGTLAEFYEAQARWGKTISAEEREKMIEDAA 569

Query: 2581 MAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERVMFRRVG 2402
             +K  R VKRIEHKLA+AQAKKLRAERLL+KIEASM+P+GPDYDQETITDEER MFRRVG
Sbjct: 570  RSKRARVVKRIEHKLAVAQAKKLRAERLLSKIEASMLPSGPDYDQETITDEERAMFRRVG 629

Query: 2401 LRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYESGGILV 2222
            LRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTL+FVEDTARLLEYESGGILV
Sbjct: 630  LRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILV 689

Query: 2221 AIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHISDLESTI 2042
            AIERVPKGFALIYYRGKNYRRPI++RPRNLLTKAKALKRSVAMQRHEALSQHIS+LE TI
Sbjct: 690  AIERVPKGFALIYYRGKNYRRPINLRPRNLLTKAKALKRSVAMQRHEALSQHISELERTI 749

Query: 2041 EQMRNEIGVSQDVEEENVACLKDRKH--IDDALDSITDEDEASDLDSD 1904
            E+M+ EIG S + E+EN    + ++H  +++  D    EDE S + +D
Sbjct: 750  EEMKKEIGFSPEEEDENNWTSEPKEHGRLNNLSDFTQSEDEPSFIGAD 797


>ref|XP_010045645.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Eucalyptus grandis]
            gi|629119370|gb|KCW83860.1| hypothetical protein
            EUGRSUZ_B00725 [Eucalyptus grandis]
            gi|629119371|gb|KCW83861.1| hypothetical protein
            EUGRSUZ_B00725 [Eucalyptus grandis]
            gi|629119372|gb|KCW83862.1| hypothetical protein
            EUGRSUZ_B00725 [Eucalyptus grandis]
            gi|629119373|gb|KCW83863.1| hypothetical protein
            EUGRSUZ_B00725 [Eucalyptus grandis]
          Length = 861

 Score = 1011 bits (2615), Expect = 0.0
 Identities = 552/853 (64%), Positives = 628/853 (73%), Gaps = 34/853 (3%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSS--PSINILFSPPKPSSFHILRTF-SSLKTTEHSDRRNSRTNRFPN 4190
            E+PLRN+LP AS  S   S+++LF+ P P      R F  SL+TT   D  +S       
Sbjct: 10   ELPLRNALPRASSGSGRSSLHLLFASPTPLE---RRCFCQSLRTTNPRDASSSH------ 60

Query: 4189 SLDDQNPKPLSHKTPKSTSAPWLNKWPSPTPLTNHNSVESNGREKNAGG-------YVGK 4031
                           K  SAPWLNKWP P P       ES G    +         Y G 
Sbjct: 61   ----------ERSGGKPHSAPWLNKWPPP-PREREIDEESPGEVAGSDSRGEAERRYSGN 109

Query: 4030 DRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQREW 3851
            DRG+++IERIVLRLRN                          + RPTG+E+LGDLL+REW
Sbjct: 110  DRGQNAIERIVLRLRNLGLGLDDEEEGDEEEGEGEFG-----AARPTGEERLGDLLRREW 164

Query: 3850 VRPDYVLAEEK--SDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEEL 3677
            +RPD  L E++   DD   LPWE++             GM KR V+AP+LAELT+EDEEL
Sbjct: 165  IRPDSFLEEDEREEDDAGLLPWEKEGKGEVKAEEKVVGGM-KRSVKAPSLAELTIEDEEL 223

Query: 3676 RRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVER 3497
            RRLRR GM++RERIS+ KAG+TQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHE+VER
Sbjct: 224  RRLRRNGMYLRERISVAKAGITQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEVVER 283

Query: 3496 RTGGLVIWRSGSVMVVYRGSKYEGP-SKTQPIHRERDALFIPDVSAAEDPLLRSGTDATS 3320
            RTGGLVIWRSGSVMVVYRG  YEGP S++QPI RE DALFIPDVS+A   +  SG D   
Sbjct: 284  RTGGLVIWRSGSVMVVYRGKNYEGPASRSQPIVREGDALFIPDVSSANRAVAESGDDVKP 343

Query: 3319 NLEKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYK 3140
              EKSE +  +    +++T EE E+N LLD LGPRF EWWGTGVLPVDADLLPQK+P YK
Sbjct: 344  EREKSEVSVRSPVLKESLTEEEIEYNDLLDGLGPRFEEWWGTGVLPVDADLLPQKIPGYK 403

Query: 3139 TPFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKI 2960
            TPFRLLPTGMRSRLTN EMTNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS V KI
Sbjct: 404  TPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSSVVKI 463

Query: 2959 AVKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQ 2780
            AVKRGIQNTNNKLMA+ELK LTGGVLLLRNKYYIV YRGKDFLP TVA AL+ERQ+LAKQ
Sbjct: 464  AVKRGIQNTNNKLMADELKDLTGGVLLLRNKYYIVFYRGKDFLPPTVATALSERQELAKQ 523

Query: 2779 VQDVEEKVR---------------------VQDVEEKLRNGVVDAVPSSEEGGQALAGTL 2663
            +QDVEEK+R                     +QDVEEKL+ G VDA PS +E G A AGTL
Sbjct: 524  IQDVEEKLRTGTVPPTVATALSERQELAKQIQDVEEKLQTGTVDAAPS-KEAGYAQAGTL 582

Query: 2662 AEFYEAQARWGREITAEERQKMIEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIE 2483
            AEFYEAQARWGR+I+ EER+KMIEE S +K+VR VKRIEHKL +AQAKKLRA++LL+KIE
Sbjct: 583  AEFYEAQARWGRDISNEEREKMIEEASKSKSVRLVKRIEHKLDLAQAKKLRADKLLSKIE 642

Query: 2482 ASMIPAGPDYDQETITDEERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVK 2303
            ASM+PA PD DQETITDEER MFR+VGLRMK YLPLGIRGVFDGVIENMHLHWKHRELVK
Sbjct: 643  ASMVPASPDDDQETITDEERTMFRKVGLRMKPYLPLGIRGVFDGVIENMHLHWKHRELVK 702

Query: 2302 LISKQKTLSFVEDTARLLEYESGGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTK 2123
            LI+KQKT +FVEDTARLLE+ESGGILV+IE VPKG+ALIYYRGKNYRRPIS+RPRNLLTK
Sbjct: 703  LITKQKTRTFVEDTARLLEFESGGILVSIESVPKGYALIYYRGKNYRRPISLRPRNLLTK 762

Query: 2122 AKALKRSVAMQRHEALSQHISDLESTIEQMRNEIGVSQDVEEENVACLKDRKHIDDALDS 1943
            AKALKRSVAMQRHEALSQHIS+LE TIEQM+ EIG S ++E E+    K     D+  + 
Sbjct: 763  AKALKRSVAMQRHEALSQHISELEHTIEQMKKEIGDSCEIESEDPWSSKGNGQFDEVSEL 822

Query: 1942 ITDEDEASDLDSD 1904
               ED+    D D
Sbjct: 823  KMSEDDGPTSDPD 835


>gb|KCW83864.1| hypothetical protein EUGRSUZ_B00725 [Eucalyptus grandis]
          Length = 856

 Score = 1006 bits (2601), Expect = 0.0
 Identities = 548/836 (65%), Positives = 622/836 (74%), Gaps = 34/836 (4%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSS--PSINILFSPPKPSSFHILRTF-SSLKTTEHSDRRNSRTNRFPN 4190
            E+PLRN+LP AS  S   S+++LF+ P P      R F  SL+TT   D  +S       
Sbjct: 10   ELPLRNALPRASSGSGRSSLHLLFASPTPLE---RRCFCQSLRTTNPRDASSSH------ 60

Query: 4189 SLDDQNPKPLSHKTPKSTSAPWLNKWPSPTPLTNHNSVESNGREKNAGG-------YVGK 4031
                           K  SAPWLNKWP P P       ES G    +         Y G 
Sbjct: 61   ----------ERSGGKPHSAPWLNKWPPP-PREREIDEESPGEVAGSDSRGEAERRYSGN 109

Query: 4030 DRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQREW 3851
            DRG+++IERIVLRLRN                          + RPTG+E+LGDLL+REW
Sbjct: 110  DRGQNAIERIVLRLRNLGLGLDDEEEGDEEEGEGEFG-----AARPTGEERLGDLLRREW 164

Query: 3850 VRPDYVLAEEK--SDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEEL 3677
            +RPD  L E++   DD   LPWE++             GM KR V+AP+LAELT+EDEEL
Sbjct: 165  IRPDSFLEEDEREEDDAGLLPWEKEGKGEVKAEEKVVGGM-KRSVKAPSLAELTIEDEEL 223

Query: 3676 RRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVER 3497
            RRLRR GM++RERIS+ KAG+TQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHE+VER
Sbjct: 224  RRLRRNGMYLRERISVAKAGITQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEVVER 283

Query: 3496 RTGGLVIWRSGSVMVVYRGSKYEGP-SKTQPIHRERDALFIPDVSAAEDPLLRSGTDATS 3320
            RTGGLVIWRSGSVMVVYRG  YEGP S++QPI RE DALFIPDVS+A   +  SG D   
Sbjct: 284  RTGGLVIWRSGSVMVVYRGKNYEGPASRSQPIVREGDALFIPDVSSANRAVAESGDDVKP 343

Query: 3319 NLEKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYK 3140
              EKSE +  +    +++T EE E+N LLD LGPRF EWWGTGVLPVDADLLPQK+P YK
Sbjct: 344  EREKSEVSVRSPVLKESLTEEEIEYNDLLDGLGPRFEEWWGTGVLPVDADLLPQKIPGYK 403

Query: 3139 TPFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKI 2960
            TPFRLLPTGMRSRLTN EMTNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS V KI
Sbjct: 404  TPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSSVVKI 463

Query: 2959 AVKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQ 2780
            AVKRGIQNTNNKLMA+ELK LTGGVLLLRNKYYIV YRGKDFLP TVA AL+ERQ+LAKQ
Sbjct: 464  AVKRGIQNTNNKLMADELKDLTGGVLLLRNKYYIVFYRGKDFLPPTVATALSERQELAKQ 523

Query: 2779 VQDVEEKVR---------------------VQDVEEKLRNGVVDAVPSSEEGGQALAGTL 2663
            +QDVEEK+R                     +QDVEEKL+ G VDA PS +E G A AGTL
Sbjct: 524  IQDVEEKLRTGTVPPTVATALSERQELAKQIQDVEEKLQTGTVDAAPS-KEAGYAQAGTL 582

Query: 2662 AEFYEAQARWGREITAEERQKMIEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIE 2483
            AEFYEAQARWGR+I+ EER+KMIEE S +K+VR VKRIEHKL +AQAKKLRA++LL+KIE
Sbjct: 583  AEFYEAQARWGRDISNEEREKMIEEASKSKSVRLVKRIEHKLDLAQAKKLRADKLLSKIE 642

Query: 2482 ASMIPAGPDYDQETITDEERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVK 2303
            ASM+PA PD DQETITDEER MFR+VGLRMK YLPLGIRGVFDGVIENMHLHWKHRELVK
Sbjct: 643  ASMVPASPDDDQETITDEERTMFRKVGLRMKPYLPLGIRGVFDGVIENMHLHWKHRELVK 702

Query: 2302 LISKQKTLSFVEDTARLLEYESGGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTK 2123
            LI+KQKT +FVEDTARLLE+ESGGILV+IE VPKG+ALIYYRGKNYRRPIS+RPRNLLTK
Sbjct: 703  LITKQKTRTFVEDTARLLEFESGGILVSIESVPKGYALIYYRGKNYRRPISLRPRNLLTK 762

Query: 2122 AKALKRSVAMQRHEALSQHISDLESTIEQMRNEIGVSQDVEEENVACLKDRKHIDD 1955
            AKALKRSVAMQRHEALSQHIS+LE TIEQM+ EIG S ++E E+    K     D+
Sbjct: 763  AKALKRSVAMQRHEALSQHISELEHTIEQMKKEIGDSCEIESEDPWSSKGNGQFDE 818


>ref|XP_012440292.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Gossypium raimondii]
          Length = 854

 Score = 1005 bits (2598), Expect = 0.0
 Identities = 550/826 (66%), Positives = 629/826 (76%), Gaps = 6/826 (0%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRS-SPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPNSL 4184
            EMPLR  LP +S S S S+N+ FS PKPS F    T SSL+         S TN  P S+
Sbjct: 10   EMPLRTPLPFSSNSYSSSLNLFFSLPKPS-FCFFTTSSSLR---------SGTN--PGSI 57

Query: 4183 DDQNPKPLSHK--TPKSTSAPWLNKWPSPTPLTNHNSVESNGREKNAGGYVGKDRGKSSI 4010
             ++   P  H+  T  S+S+  L  W SP+     +  + NG+  +   Y+ K  G+S+I
Sbjct: 58   SNRYSHPWYHRLSTGASSSSSSLQAWSSPSEKVIQS--DGNGKADSETRYLNK--GQSAI 113

Query: 4009 ERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQREWVRPDYVL 3830
            +RIVLRLRN                         +S   TG+E+LGDLL+REWVRPD  L
Sbjct: 114  DRIVLRLRNLGLGSDDEDEEDDGTDDY-------NSTPVTGEERLGDLLKREWVRPDTRL 166

Query: 3829 AEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEELRRLRRMGMF 3650
             E K  +E  LPWER++             ++KR V+APTLAELT+EDEELRRLRRMGM 
Sbjct: 167  IE-KEKEEAVLPWEREEAVVEVVVKEGGL-LKKRTVKAPTLAELTIEDEELRRLRRMGMH 224

Query: 3649 VRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWR 3470
            +RERI++PKAG+T+ VLEKIHDKWRKEELVRLKFHE LA DM+TAHEIVERRTGGLVIWR
Sbjct: 225  LRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHEIVERRTGGLVIWR 284

Query: 3469 SGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATSNLEKSEPAAI 3290
            SGSVMVVYRGS YEGPSK+Q    E +ALFIPDVS+A      +G+ +TS  EKS+   +
Sbjct: 285  SGSVMVVYRGSNYEGPSKSQS--GEGEALFIPDVSSAGKRESETGSGSTS--EKSDKVVV 340

Query: 3289 NRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYKTPFRLLPTGM 3110
               R+++MT EEAE+NSLLD LGPRFVEWWGTG+LPVDADLLP K+P YKTPFRLLP GM
Sbjct: 341  KPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPGYKTPFRLLPAGM 400

Query: 3109 RSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTN 2930
            R RLTN EMTNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS+VAKIAVKRGIQNTN
Sbjct: 401  RPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVAKIAVKRGIQNTN 460

Query: 2929 NKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQVQDVEEKVRV 2750
            NKLMAEELK LTGGVLLLRNKY+IVIYRGKDFLPT VAAALAERQ L KQ+QD EEK+R+
Sbjct: 461  NKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLTKQIQDAEEKLRI 520

Query: 2749 QDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQKMIEEDSMAKN 2570
            + VE            S E+ GQA AGTLAEFYEAQARWGR+I+AEER+KMIEE S AK+
Sbjct: 521  KAVEP---------AQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASKAKH 571

Query: 2569 VRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERVMFRRVGLRMK 2390
             + VKR+EHKLAIAQAKKLRAERLLAKIEASMIPA PDYDQETITDEERVMFRRVGLRMK
Sbjct: 572  AKLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGLRMK 631

Query: 2389 AYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYESGGILVAIER 2210
             YLPLG+RGVFDGVIENMHLHWKHRELVKLISKQK L+FVED+ARLLEYESGGILVAIER
Sbjct: 632  PYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVAIER 691

Query: 2209 VPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHISDLESTIEQMR 2030
            VPKG+ALIYYRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHIS LE+TIEQM+
Sbjct: 692  VPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIEQMK 751

Query: 2029 NEIGVSQDVEEENVACLKDRKHIDDALDSITDEDE---ASDLDSDY 1901
             EI  S+D +++N          D   +    EDE   A D D +Y
Sbjct: 752  KEIDASEDGDDDNNRGSGKHGQFDPVSEFTESEDEENIAPDTDDEY 797


>ref|XP_012440291.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Gossypium raimondii]
          Length = 854

 Score = 1004 bits (2596), Expect = 0.0
 Identities = 550/826 (66%), Positives = 628/826 (76%), Gaps = 6/826 (0%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRS-SPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPNSL 4184
            EMPLR  LP +S S S S+N+ FS PKPS F    T SSL+         S TN  P S+
Sbjct: 10   EMPLRTPLPFSSNSYSSSLNLFFSLPKPS-FCFFTTSSSLR---------SGTN--PGSI 57

Query: 4183 DDQNPKPLSHK--TPKSTSAPWLNKWPSPTPLTNHNSVESNGREKNAGGYVGKDRGKSSI 4010
             ++   P  H+  T  S+S+  L  W SP+     +  + NG+  +   Y+ K  G+S+I
Sbjct: 58   SNRYSHPWYHRLSTGASSSSSSLQAWSSPSEKVIQS--DGNGKADSETRYLNK--GQSAI 113

Query: 4009 ERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQREWVRPDYVL 3830
            +RIVLRLRN                         +S   TG+E+LGDLL+REWVRPD  L
Sbjct: 114  DRIVLRLRNLGLGSDDEDEEDDGTDDY-------NSTPVTGEERLGDLLKREWVRPDTRL 166

Query: 3829 AEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEELRRLRRMGMF 3650
             E K  +E  LPWER++             ++KR V+APTLAELT+EDEELRRLRRMGM 
Sbjct: 167  IE-KEKEEAVLPWEREEAVVEVVVKEGGL-LKKRTVKAPTLAELTIEDEELRRLRRMGMH 224

Query: 3649 VRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWR 3470
            +RERI++PKAG+T+ VLEKIHDKWRKEELVRLKFHE LA DM+TAHEIVERRTGGLVIWR
Sbjct: 225  LRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHEIVERRTGGLVIWR 284

Query: 3469 SGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATSNLEKSEPAAI 3290
            SGSVMVVYRGS YEGPSK+Q    E +ALFIPDVS+A      +G+ +TS  EKS+   +
Sbjct: 285  SGSVMVVYRGSNYEGPSKSQS--GEGEALFIPDVSSAGKRESETGSGSTS--EKSDKVVV 340

Query: 3289 NRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYKTPFRLLPTGM 3110
               R+++MT EEAE+NSLLD LGPRFVEWWGTG+LPVDADLLP K+P YKTPFRLLP GM
Sbjct: 341  KPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPGYKTPFRLLPAGM 400

Query: 3109 RSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTN 2930
            R RLTN EMTNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS+VAKIAVKRGIQNTN
Sbjct: 401  RPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVAKIAVKRGIQNTN 460

Query: 2929 NKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQVQDVEEKVRV 2750
            NKLMAEELK LTGGVLLLRNKY+IVIYRGKDFLPT VAAALAERQ L KQ+QD EEK+R+
Sbjct: 461  NKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLTKQIQDAEEKLRI 520

Query: 2749 QDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQKMIEEDSMAKN 2570
            + VE            S E+ GQA AGTLAEFYEAQARWGR+I+AEER+KMIEE S AK+
Sbjct: 521  KAVEP---------AQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASKAKH 571

Query: 2569 VRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERVMFRRVGLRMK 2390
             + VKR+EHKLAIAQAKKLRAERLLAKIEASMIPA PDYDQETITDEERVMFRRVGLRMK
Sbjct: 572  AKLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGLRMK 631

Query: 2389 AYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYESGGILVAIER 2210
             YLPLG+RGVFDGVIENMHLHWKHRELVKLISKQK L+FVED+ARLLEYESGGILVAIER
Sbjct: 632  PYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVAIER 691

Query: 2209 VPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHISDLESTIEQMR 2030
            VPKG+ALIYYRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHIS LE+TIEQM+
Sbjct: 692  VPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIEQMK 751

Query: 2029 NEIGVSQDVEEENVACLKDRKHIDDALDSITDEDE---ASDLDSDY 1901
             EI  S+D  ++N          D   +    EDE   A D D +Y
Sbjct: 752  KEIDASEDGGDDNNRSSGKHGQFDPVSEFTESEDEENIAPDTDDEY 797


>ref|XP_006440978.1| hypothetical protein CICLE_v10018859mg [Citrus clementina]
            gi|567896982|ref|XP_006440979.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
            gi|567896984|ref|XP_006440980.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
            gi|557543240|gb|ESR54218.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
            gi|557543241|gb|ESR54219.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
            gi|557543242|gb|ESR54220.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
          Length = 833

 Score = 1003 bits (2592), Expect = 0.0
 Identities = 549/845 (64%), Positives = 634/845 (75%), Gaps = 26/845 (3%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRSSPSINIL---FSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPN 4190
            E+P RNSL L S S+PS+N L    S  K  SF +L+ FSSL+T +     N RT+    
Sbjct: 10   ELPFRNSLTLTSHSTPSLNHLPFSSSSRKTPSFQLLKPFSSLRTNQ-----NPRTD---- 60

Query: 4189 SLDDQNPKPLSHKTPKSTSAPWLNKWPSPTPLTNHNSVESNGREKNAGGYVGKD------ 4028
            S + Q PKP S     STSAPWLN W  P P +  N+ +  GR +        D      
Sbjct: 61   SQNQQFPKPRS----PSTSAPWLNNWSRPKPPSTENANKLGGRNQIDEKQTSPDSYPRYS 116

Query: 4027 ----RGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMR--PTGDEKLGDL 3866
                +G+++IERIVLRLRN                        +D +    TG+E+L DL
Sbjct: 117  DSDNKGRNAIERIVLRLRN----------LGLGSDDEEEGEEEEDDINDAATGEERLEDL 166

Query: 3865 LQREWVRPDYVLAE-EKSDDEMALPWER-DDXXXXXXXXXXXXGMRKRRVRAPTLAELTV 3692
            L+REWVRP+ VL E E  +D+  LPWER ++              R+RR++APTLAELT+
Sbjct: 167  LRREWVRPNTVLREVEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRRMKAPTLAELTI 226

Query: 3691 EDEELRRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAH 3512
            EDEELRRLRR GM++RERI++PKAGLTQ V+ KIHDKWRK+ELVRLKFHEVLA DMKTAH
Sbjct: 227  EDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAH 286

Query: 3511 EIVERRTGGLVIWRSGSVMVVYRGSKYEGP-SKTQPIHRERDALFIPDVSAAEDPLLRSG 3335
            EIVERRTGGLVIWR+GSVMVVYRGS Y GP SK QPI  + D LF+P VS+ +      G
Sbjct: 287  EIVERRTGGLVIWRAGSVMVVYRGSNYAGPSSKPQPIDGDGDTLFVPHVSSTD------G 340

Query: 3334 TDATSNLEKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQK 3155
            + A S  EKSE        ++ MT EEAE NSLLD LGPRF EWWGTG+LPVDADLLP K
Sbjct: 341  STARSVDEKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPK 400

Query: 3154 VPDYKTPFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKS 2975
            V  YKTPFRLLPTGMRSRLTN EMT+LR++A+S+PCHFALGRNRNHQGLA AILKLWEKS
Sbjct: 401  VDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKS 460

Query: 2974 LVAKIAVKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQ 2795
            LVAKIAVKRGIQNTNNKLMAEELK LTGG LL RNK+YIV+YRGKDFLP  VA+ALAER+
Sbjct: 461  LVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAERE 520

Query: 2794 QLAKQVQDVEEKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITA 2615
            Q AKQ+QDVEEKVR + +E         A PS E  GQA AGTLAEFYEAQ RWGRE++A
Sbjct: 521  QCAKQIQDVEEKVRSKTLE---------ATPSGETEGQAPAGTLAEFYEAQKRWGREVSA 571

Query: 2614 EERQKMIEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETIT 2435
            EER+KM+EE S AK+ R VKRIEHKLA++QAKKLRAERLLAKIEASM+P+GPDYDQETIT
Sbjct: 572  EEREKMVEEASKAKHGRLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETIT 631

Query: 2434 DEERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTAR 2255
            DEER MFRRVGLRMKA+LPLGIRGVFDGV+ENMHLHWK+RELVKLI+KQKTL++VEDTAR
Sbjct: 632  DEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTAR 691

Query: 2254 LLEYESGGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEAL 2075
            LLEYES GIL+AIERVPKGFALI+YRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEAL
Sbjct: 692  LLEYESVGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEAL 751

Query: 2074 SQHISDLESTIEQMRNEIGVSQDVEEENVACLKDRKHID--------DALDSITDEDEAS 1919
            SQHISDLE+TIEQM+ EIGVS+D E+ N+ C  D K  D        +  D ++DED  S
Sbjct: 752  SQHISDLENTIEQMKKEIGVSKDEEDGNIRCSGDLKQFDHVSVLPQNEDNDYVSDEDFDS 811

Query: 1918 DLDSD 1904
            + D D
Sbjct: 812  EADED 816


>ref|XP_012440290.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Gossypium raimondii]
            gi|763785914|gb|KJB52985.1| hypothetical protein
            B456_008G286900 [Gossypium raimondii]
          Length = 868

 Score = 1000 bits (2585), Expect = 0.0
 Identities = 544/805 (67%), Positives = 621/805 (77%), Gaps = 3/805 (0%)
 Frame = -3

Query: 4360 EMPLRNSLPLASRS-SPSINILFSPPKPSSFHILRTFSSLKTTEHSDRRNSRTNRFPNSL 4184
            EMPLR  LP +S S S S+N+ FS PKPS F    T SSL+         S TN  P S+
Sbjct: 10   EMPLRTPLPFSSNSYSSSLNLFFSLPKPS-FCFFTTSSSLR---------SGTN--PGSI 57

Query: 4183 DDQNPKPLSHK--TPKSTSAPWLNKWPSPTPLTNHNSVESNGREKNAGGYVGKDRGKSSI 4010
             ++   P  H+  T  S+S+  L  W SP+     +  + NG+  +   Y+ K  G+S+I
Sbjct: 58   SNRYSHPWYHRLSTGASSSSSSLQAWSSPSEKVIQS--DGNGKADSETRYLNK--GQSAI 113

Query: 4009 ERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGDLLQREWVRPDYVL 3830
            +RIVLRLRN                         +S   TG+E+LGDLL+REWVRPD  L
Sbjct: 114  DRIVLRLRNLGLGSDDEDEEDDGTDDY-------NSTPVTGEERLGDLLKREWVRPDTRL 166

Query: 3829 AEEKSDDEMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTVEDEELRRLRRMGMF 3650
             E K  +E  LPWER++             ++KR V+APTLAELT+EDEELRRLRRMGM 
Sbjct: 167  IE-KEKEEAVLPWEREEAVVEVVVKEGGL-LKKRTVKAPTLAELTIEDEELRRLRRMGMH 224

Query: 3649 VRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWR 3470
            +RERI++PKAG+T+ VLEKIHDKWRKEELVRLKFHE LA DM+TAHEIVERRTGGLVIWR
Sbjct: 225  LRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHEIVERRTGGLVIWR 284

Query: 3469 SGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGTDATSNLEKSEPAAI 3290
            SGSVMVVYRGS YEGPSK+Q    E +ALFIPDVS+A      +G+ +TS  EKS+   +
Sbjct: 285  SGSVMVVYRGSNYEGPSKSQS--GEGEALFIPDVSSAGKRESETGSGSTS--EKSDKVVV 340

Query: 3289 NRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKVPDYKTPFRLLPTGM 3110
               R+++MT EEAE+NSLLD LGPRFVEWWGTG+LPVDADLLP K+P YKTPFRLLP GM
Sbjct: 341  KPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPGYKTPFRLLPAGM 400

Query: 3109 RSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTN 2930
            R RLTN EMTNLRK+AKS+PCHFALGRNRNHQGLA AI+KLWEKS+VAKIAVKRGIQNTN
Sbjct: 401  RPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVAKIAVKRGIQNTN 460

Query: 2929 NKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQLAKQVQDVEEKVRV 2750
            NKLMAEELK LTGGVLLLRNKY+IVIYRGKDFLPT VAAALAERQ L KQ+QD EEK+R+
Sbjct: 461  NKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLTKQIQDAEEKLRI 520

Query: 2749 QDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAEERQKMIEEDSMAKN 2570
            + VE            S E+ GQA AGTLAEFYEAQARWGR+I+AEER+KMIEE S AK+
Sbjct: 521  KAVEP---------AQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASKAKH 571

Query: 2569 VRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITDEERVMFRRVGLRMK 2390
             + VKR+EHKLAIAQAKKLRAERLLAKIEASMIPA PDYDQETITDEERVMFRRVGLRMK
Sbjct: 572  AKLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGLRMK 631

Query: 2389 AYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYESGGILVAIER 2210
             YLPLG+RGVFDGVIENMHLHWKHRELVKLISKQK L+FVED+ARLLEYESGGILVAIER
Sbjct: 632  PYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVAIER 691

Query: 2209 VPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALSQHISDLESTIEQMR 2030
            VPKG+ALIYYRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHIS LE+TIEQM+
Sbjct: 692  VPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIEQMK 751

Query: 2029 NEIGVSQDVEEENVACLKDRKHIDD 1955
             EI  S+D  ++N     +    DD
Sbjct: 752  KEIDASEDGGDDNNRSSGEHGQFDD 776


>ref|XP_010265125.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nelumbo nucifera]
          Length = 838

 Score =  997 bits (2577), Expect = 0.0
 Identities = 534/836 (63%), Positives = 632/836 (75%), Gaps = 15/836 (1%)
 Frame = -3

Query: 4366 FYEMPLRNSLPLASRSSPSINILFSPPKPSSFHILR--TFSSLKTTEHSDRRNSR----T 4205
            F E+ L NS+ +  RS  S+ +LFS  KPS   + R  + SSL+T+E SDR + R    +
Sbjct: 8    FTELRLHNSIQI--RSHHSLGLLFSS-KPSLSIVSRFSSTSSLRTSERSDRADDRWSPRS 64

Query: 4204 NRFPNSLDDQNPK--PLSHKTPKSTSAPWLNKWPSPTP-LTNHNSVESNGREKNA----- 4049
             R+P   DD NP+  P      ++ SAPWLNKWPS  P +   N +  + +++       
Sbjct: 65   RRYP--WDDDNPRRNPTVSDKSRTPSAPWLNKWPSVNPPIGAVNRIADSEKQRKVEDPVE 122

Query: 4048 GGYVGKDRGKSSIERIVLRLRNXXXXXXXXXXXXXXXXXXXXXXXGQDSMRPTGDEKLGD 3869
              Y   D+G+S+IERI  RLRN                         + M  +G+EKLGD
Sbjct: 123  SRYFDGDKGRSAIERIAHRLRNLGLGSDDEDEEVGGES--------NEEMPLSGEEKLGD 174

Query: 3868 LLQREWVRPDYVLAEEKSDD-EMALPWERDDXXXXXXXXXXXXGMRKRRVRAPTLAELTV 3692
            LL+R W RPD +L E++ +  +M LPWERD+              +K+RV+APTLAELT+
Sbjct: 175  LLKRTWSRPDSILHEDEDEKGKMLLPWERDEDDQSEEEDGRGLK-KKKRVKAPTLAELTI 233

Query: 3691 EDEELRRLRRMGMFVRERISIPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAH 3512
            ED ELRRLR +GM +RER++IPKAG+TQ +LEKIH+KWRK ELVRLKFHE LAHDMKTA 
Sbjct: 234  EDAELRRLRTLGMTLRERVNIPKAGVTQVILEKIHEKWRKSELVRLKFHETLAHDMKTAL 293

Query: 3511 EIVERRTGGLVIWRSGSVMVVYRGSKYEGPSKTQPIHRERDALFIPDVSAAEDPLLRSGT 3332
            EIVERRTGGLVIWRSGS+MVVYRGS YE  S+ + +  E +ALF+PDVS++ + + +   
Sbjct: 294  EIVERRTGGLVIWRSGSIMVVYRGSNYEPFSRLKTVESEGNALFVPDVSSSANSISKINN 353

Query: 3331 DATSNLEKSEPAAINRYRNQNMTAEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPQKV 3152
            D  S  EK +P   N  + ++MT EEAE+NSLLD LGPRFV+WWGTG+LPVDADLLPQ +
Sbjct: 354  DIMSAPEKKDPGVQNPNQAESMTEEEAEYNSLLDGLGPRFVDWWGTGILPVDADLLPQTI 413

Query: 3151 PDYKTPFRLLPTGMRSRLTNGEMTNLRKVAKSIPCHFALGRNRNHQGLACAILKLWEKSL 2972
            P YKTPFRLLPTGMR RLTN EMTNLRK+AKS+PCHFALGRNRNHQGLA AI+KLW+KSL
Sbjct: 414  PSYKTPFRLLPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIVKLWDKSL 473

Query: 2971 VAKIAVKRGIQNTNNKLMAEELKMLTGGVLLLRNKYYIVIYRGKDFLPTTVAAALAERQQ 2792
            VAKIAVKRGIQNTNNKLMAEELK LTGGVLLLRNKYYIVIYRGKDFLPT+VA ALAERQ+
Sbjct: 474  VAKIAVKRGIQNTNNKLMAEELKKLTGGVLLLRNKYYIVIYRGKDFLPTSVAFALAERQE 533

Query: 2791 LAKQVQDVEEKVRVQDVEEKLRNGVVDAVPSSEEGGQALAGTLAEFYEAQARWGREITAE 2612
            L K++QDVEEK          R+G V +    E GGQALAGTL+E+ EAQARWGREI+AE
Sbjct: 534  LTKEIQDVEEKA---------RSGAVVSAHVEEIGGQALAGTLSEYREAQARWGREISAE 584

Query: 2611 ERQKMIEEDSMAKNVRRVKRIEHKLAIAQAKKLRAERLLAKIEASMIPAGPDYDQETITD 2432
            E +KM EE S AKN + VKRIEHKL +AQAKKLRAE+LLAKIE SM+P GP  DQETITD
Sbjct: 585  EHEKMKEEASRAKNAKAVKRIEHKLTVAQAKKLRAEKLLAKIEKSMVPVGPSDDQETITD 644

Query: 2431 EERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARL 2252
            EER MFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARL
Sbjct: 645  EERFMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARL 704

Query: 2251 LEYESGGILVAIERVPKGFALIYYRGKNYRRPISVRPRNLLTKAKALKRSVAMQRHEALS 2072
            LEYESGGILVAIERVPKG+ALIYYRGKNY+RPIS+RPRNLLTKAKALKRSVAMQRHEALS
Sbjct: 705  LEYESGGILVAIERVPKGYALIYYRGKNYQRPISLRPRNLLTKAKALKRSVAMQRHEALS 764

Query: 2071 QHISDLESTIEQMRNEIGVSQDVEEENVACLKDRKHIDDALDSITDEDEASDLDSD 1904
            QHI++LE TIEQM++EIG+S+DV+ E+    +D +  D+       EDE S ++ D
Sbjct: 765  QHITELERTIEQMKSEIGMSKDVDYEDTWSEEDPRRFDNVSAFTESEDEGSSMEDD 820