BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00005951
         (2104 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   750   0.0  
ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,...   733   0.0  
ref|XP_008376694.1| PREDICTED: RNA polymerase sigma factor sigE,...   731   0.0  
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   728   0.0  
ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,...   727   0.0  
ref|XP_010097858.1| RNA polymerase sigma factor rpoD [Morus nota...   727   0.0  
ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,...   721   0.0  
ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao] g...   720   0.0  
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,...   718   0.0  
ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,...   702   0.0  
gb|AKC88737.1| sigma factor [Francoa sonchifolia]                     698   0.0  
ref|XP_012090115.1| PREDICTED: RNA polymerase sigma factor sigE,...   697   0.0  
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...   695   0.0  
gb|AKC88745.1| sigma factor [Melianthus villosus]                     694   0.0  
ref|XP_011001910.1| PREDICTED: RNA polymerase sigma factor sigE,...   693   0.0  
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   691   0.0  
gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium r...   689   0.0  
gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   689   0.0  
ref|XP_008465379.1| PREDICTED: RNA polymerase sigma factor sigE,...   688   0.0  
ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,...   685   0.0  

>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  750 bits (1936), Expect = 0.0
 Identities = 394/519 (75%), Positives = 440/519 (84%), Gaps = 4/519 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVVTVSSSA++TPLGLS K    +S  +KPLIVAFK D+ N+TALVAP E+IPLPIE R
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDA-SDVEDV 1588
            K+HQKRLGK  K +K V +A TD AS CTLEVDYNEAAAKLEN+YK SP T+A SDVEDV
Sbjct: 61   KKHQKRLGKARKLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 120

Query: 1587 XXXXXXXXXXXXKISADD--EEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEV-NA 1417
                        K S  D  ++E RTS + VR+R KKAKRL+L+KRV LK NK ++V ++
Sbjct: 121  DGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISS 180

Query: 1416 CVRKRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKAL 1237
             VRKRK   +EN+ IE LVREYS STDLVSLDWKKMKIPPVL S+EHAWLFKLMQP+K L
Sbjct: 181  IVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1236 LQVNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKY 1057
            L+V ENL++ LGR+PT GELAEATNMS+ QVK+HLEVGRAAR+KLIKHNLRLVLFV+NKY
Sbjct: 241  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 300

Query: 1056 FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRV 877
            FQDFANGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTLSSF RV
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRV 360

Query: 876  SFGLESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHA 697
            SFGLESVRAEIQKAKL ++F LKR+PTE+EIIEKVGISPERY+EVMRASK VFSLHSRH 
Sbjct: 361  SFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHT 420

Query: 696  VTQEEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTL 517
             TQEEFI+GITDV+GVEGDNR++PA            LKPKESLVIRQRYGLDG+GDRTL
Sbjct: 421  TTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 516  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+V
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 519


>ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  733 bits (1893), Expect = 0.0
 Identities = 388/519 (74%), Positives = 432/519 (83%), Gaps = 4/519 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVVTVS+SAA+TPLGLS K  + +S  +KP IVAFK D+ N+TALVAP  +IPLPIE R
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCT-LEVDYNEAAAKLENIYKLSPMTDAS-DVED 1591
            K+HQKR+GK  K +K V +  TD A+ CT LEVDYNEAAAKLEN+YK SP  +A  DVED
Sbjct: 61   KKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 1590 VXXXXXXXXXXXXKISADD--EEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNA 1417
                         K S  D  +EEKRTS   VRS+ KKAKRLNLDKRV LK NK ++V +
Sbjct: 121  ADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNKDEKVVS 180

Query: 1416 CVRKRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKAL 1237
             V+KRK+  +E + IE LVREYSASTDLVSLDWKKMKIPPVL S+EHAWLFKLMQP+K L
Sbjct: 181  SVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1236 LQVNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKY 1057
             +V E L++ LG +PT GELAEATNMS+ QVK+H EVGRAARNKLIKHNLRLVLFVINKY
Sbjct: 241  HEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 1056 FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRV 877
            FQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSF RV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 876  SFGLESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHA 697
            SFGLESVRAEIQKAKLE+MF LKR+PT+EEIIEKVGISPERY+EVMRASK V SLHSRHA
Sbjct: 361  SFGLESVRAEIQKAKLEMMFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 696  VTQEEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTL 517
             TQEE+I+GITDV+GVEGDNRR+PA            LKPKESLVIRQRYGLDG+GDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 516  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_008376694.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Malus domestica]
          Length = 519

 Score =  731 bits (1888), Expect = 0.0
 Identities = 386/519 (74%), Positives = 432/519 (83%), Gaps = 4/519 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVVTVS+SAA+TPLGLS K  + +S  +KPLIVAFK D+ N+TALVAP  +IPLPIE R
Sbjct: 1    MGVVTVSTSAARTPLGLSAKSTSQRSTFRKPLIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCT-LEVDYNEAAAKLENIYKLSPMTDAS-DVED 1591
            K+HQKR+GK  K +K V +  TD A+ CT LEVDYNEAAAKLEN+YK SP  +A  DVED
Sbjct: 61   KKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 1590 VXXXXXXXXXXXXKISAD--DEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNA 1417
                         K S    ++EEKRTS   VRS+ KKAKRLNLDKRV LK NK ++V +
Sbjct: 121  ADGLMRRGRKRRKKTSESNHEKEEKRTSDIVVRSKTKKAKRLNLDKRVSLKWNKDEKVVS 180

Query: 1416 CVRKRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKAL 1237
             V+KRK+  +E + IE LVREYSASTDLVSLDWKKMKIPPVL S+EHAWLFKLMQP+K L
Sbjct: 181  SVQKRKDQKNEMEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1236 LQVNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKY 1057
             +  E L++ LG +PT GELAEATNMS+ QVK+H EVGRAARNKLIKHNLRLVLFVINKY
Sbjct: 241  HEAREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 1056 FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRV 877
            FQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSF RV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 876  SFGLESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHA 697
            SFGLESVRAEIQKAKLE++F LKR+PT+EEIIEKVGISPERY+EVMRASK V SLHSRHA
Sbjct: 361  SFGLESVRAEIQKAKLEMIFSLKRIPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 696  VTQEEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTL 517
             TQEE+I+GITDV+GVEGDNRR+PA            LKPKESLVIRQRYGLDG+GDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 516  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Fragaria vesca subsp. vesca]
          Length = 520

 Score =  728 bits (1878), Expect = 0.0
 Identities = 388/520 (74%), Positives = 436/520 (83%), Gaps = 5/520 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQ-SISKKPLIVAFKADKFNETALVAPHEQIPLPIEA 1768
            MGVVTVSSS ++TPLGLS    + Q S  +KPLIVAF+ DK ++ ALVAP E++PLPIE 
Sbjct: 1    MGVVTVSSSVSRTPLGLSTNLVSSQRSTLRKPLIVAFRTDKSDKKALVAPQEKVPLPIET 60

Query: 1767 RKEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDV 1588
             K+ QKRLGK  K  K V AA+ +EA TC LE+DYNEAAAKLEN+YK SP T+ASDVE+V
Sbjct: 61   GKKVQKRLGKARKLPKSVKAALIEEAPTCDLELDYNEAAAKLENLYKRSPETEASDVENV 120

Query: 1587 XXXXXXXXXXXXK--ISADDEEEKRTSGSFV-RSRRKKAKRLNLDKRVELKKNKVDEVNA 1417
                        K     DD+ EKRTS   V RS  KKAKRL+LDKRV LK NK ++V A
Sbjct: 121  DGLMIKRGRKRRKKISEVDDKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVAA 180

Query: 1416 CV-RKRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKA 1240
             V RKRK+  SEN+ +E LVREYSASTDLVSLDWKKM+IPPVL S+EH WLFKLMQP+K 
Sbjct: 181  SVVRKRKDKRSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKG 240

Query: 1239 LLQVNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINK 1060
            LL+V E L++ LGR+P +GELAEATNM++ QVKRHLEVGRAARNKLIKHNLRLVLFVINK
Sbjct: 241  LLEVKEILQKDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINK 300

Query: 1059 YFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQR 880
            YFQDFANGP+FQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMTLSSF R
Sbjct: 301  YFQDFANGPKFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTR 360

Query: 879  VSFGLESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRH 700
            VSFGLESVRAEIQKAKLE++ +LKR+PTE+EIIEKVGISPERY+EVMRASK VFSL+SRH
Sbjct: 361  VSFGLESVRAEIQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRH 420

Query: 699  AVTQEEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRT 520
            +VTQEEFI+GITDV+GV+GDNRR+PA            LKPKESLVIRQRYGLDG+GDRT
Sbjct: 421  SVTQEEFINGITDVDGVDGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRT 480

Query: 519  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV
Sbjct: 481  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 520


>ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  727 bits (1877), Expect = 0.0
 Identities = 386/519 (74%), Positives = 430/519 (82%), Gaps = 4/519 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVVTVS+SAA+TPLGLS K  + +S  +KP IVAFK D+ N+TALVAP   IPLPIE R
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGNIPLPIETR 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCT-LEVDYNEAAAKLENIYKLSPMTDAS-DVED 1591
            K+ QKR+GK  K +K V +  TD A+ CT LEVDYNEAAAKLEN+YK SP  +A  DVED
Sbjct: 61   KKLQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 1590 VXXXXXXXXXXXXKISADD--EEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNA 1417
                         K S  D  +EEKRTS   VRS+ KKAKRLNLDKRV LK NK ++V +
Sbjct: 121  ADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNKDEKVVS 180

Query: 1416 CVRKRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKAL 1237
             V+KRK+  +E + IE LVREYSASTDLVSLDWKKMKIPPVL S+EHAWLFKLMQP+K L
Sbjct: 181  SVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1236 LQVNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKY 1057
             +V E L++ LG +PT GELAEATNMS+ QVK+H EVGRAARNKLIKHNLRLVLFVINKY
Sbjct: 241  HEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 1056 FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRV 877
            FQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSF RV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 876  SFGLESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHA 697
            SFGLESVRAEIQKAKLE++F LKR+PT+EEIIEKVGISPERY+EVMRASK V SLHSRHA
Sbjct: 361  SFGLESVRAEIQKAKLEMIFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 696  VTQEEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTL 517
             TQEE+I+GITDV+GVEGDNRR+PA            LKPKESLVIRQRYGLDG+GDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 516  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_010097858.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587883538|gb|EXB72455.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 517

 Score =  727 bits (1876), Expect = 0.0
 Identities = 384/521 (73%), Positives = 435/521 (83%), Gaps = 6/521 (1%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQS-ISKKPLIVAFKADKFNETALVAPHEQIPLPIEA 1768
            MGVVTVSSSA++TPLGLS KF + +S + KKPLIVAFK DK N+T LVAP +QI LP+E 
Sbjct: 1    MGVVTVSSSASRTPLGLSLKFSSNRSSVLKKPLIVAFKGDKSNKTVLVAPQDQIILPVET 60

Query: 1767 RKEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDV 1588
            RKE + R+GK  K S RV A  TDEAST T+EVDYNEAAAKLENI+KLS    ++DVED 
Sbjct: 61   RKEVKSRVGKAKKSSNRVKAVATDEASTSTMEVDYNEAAAKLENIFKLS----SADVEDA 116

Query: 1587 XXXXXXXXXXXXKISADDEE----EKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVN 1420
                        K+  + +E    +  TS + VR+R+KKAKRL+L KRVELK++K + V 
Sbjct: 117  VGLTSRGRRRRSKVIGESDERAGKKSTTSDTVVRNRKKKAKRLSLHKRVELKRDKEENVA 176

Query: 1419 AC-VRKRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLK 1243
               VRKR+ES++E + IE LVREYSASTDLVSLDWKKMKIPPVLPS+EH WLFKLMQPLK
Sbjct: 177  VVLVRKRRESLNEEEKIEKLVREYSASTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPLK 236

Query: 1242 ALLQVNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVIN 1063
             L QV E+L+++LGR+PTE ELAEATN+S+ QVKRHLE GRAARNKLIKHNLRLVLFV+N
Sbjct: 237  QLFQVGEDLQKTLGREPTENELAEATNISVVQVKRHLEAGRAARNKLIKHNLRLVLFVMN 296

Query: 1062 KYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQ 883
            KYFQDF NGP+FQDLCQAGV+GLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT+SSF 
Sbjct: 297  KYFQDFTNGPKFQDLCQAGVRGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT 356

Query: 882  RVSFGLESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSR 703
            RVSFGLESVRAEIQKAK+EL FELKRLPTEEEIIEKVGISPERY+EVMRASK V SL+SR
Sbjct: 357  RVSFGLESVRAEIQKAKIELTFELKRLPTEEEIIEKVGISPERYHEVMRASKPVISLNSR 416

Query: 702  HAVTQEEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDR 523
            H  TQEEFI+ ITDV+GV+GD+RR+PA            LKPKESLVIRQRYGLDG+GDR
Sbjct: 417  HVTTQEEFINAITDVDGVDGDDRRKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDR 476

Query: 522  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+V
Sbjct: 477  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYMV 517


>ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Prunus mume]
          Length = 507

 Score =  721 bits (1861), Expect = 0.0
 Identities = 386/519 (74%), Positives = 428/519 (82%), Gaps = 4/519 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVVTVSSSA++TPLGLS K  + +S  +KPLIVAFK D+ N+TALVAP E+IPLPIE  
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTSQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIEXX 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDA-SDVEDV 1588
                 +            +A TD AS CTLEVDYNEAAAKLEN+YK SP T+A SDVEDV
Sbjct: 61   XXXXXK------------SATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 108

Query: 1587 XXXXXXXXXXXXKISADD--EEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNAC 1414
                        K S  D  +EE RTS + VR+R KKAKRL+LDKRV LK NK ++V A 
Sbjct: 109  DGLMRRGRKRRKKTSESDADKEENRTSNTVVRNRTKKAKRLSLDKRVTLKWNKDEKVIAS 168

Query: 1413 -VRKRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKAL 1237
             VRKRK   +EN+ IE LVREYSASTDLVSLDWKKMKIPPVL S+EHAWLFKLMQP+K L
Sbjct: 169  IVRKRKSRKNENEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 228

Query: 1236 LQVNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKY 1057
            L+V ENL++ LGR+PT GELAEATNMS+ QVK+HLEVGRAAR+KLIKHNLRLVLFV+NKY
Sbjct: 229  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 288

Query: 1056 FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRV 877
            FQDFANGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTLSSF RV
Sbjct: 289  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRV 348

Query: 876  SFGLESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHA 697
            SFGLESVRAEIQKAKL ++F LKR+PTE+EIIEKVGISPERY+EVMRASK VFSLHSRH 
Sbjct: 349  SFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHT 408

Query: 696  VTQEEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTL 517
             TQEEFI+GITDV+GVEGDNR++PA            LKPKESLVIRQRYGLDG+GDRTL
Sbjct: 409  TTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTL 468

Query: 516  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+V
Sbjct: 469  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 507


>ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|590673674|ref|XP_007038960.1| Sigma factor E isoform 1
            [Theobroma cacao] gi|508776204|gb|EOY23460.1| Sigma
            factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  720 bits (1859), Expect = 0.0
 Identities = 375/516 (72%), Positives = 421/516 (81%), Gaps = 1/516 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVV+VSSSAA+TPLGLS KF T +  S++PL VAFKADK + TALV P E I LPIE  
Sbjct: 1    MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNTALVTPQEHILLPIETA 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVX 1585
            KEH KR GK  K  K VN   TD+ S CTLEVDYNEAAAKLENIYKLSP T +SDVE+V 
Sbjct: 61   KEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEEVE 120

Query: 1584 XXXXXXXXXXXKISADDEEEKRTSGSFV-RSRRKKAKRLNLDKRVELKKNKVDEVNACVR 1408
                       +    DE+   ++   V R++  + KRL+LD R+ LKKN+ ++    VR
Sbjct: 121  GKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSVR 180

Query: 1407 KRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQV 1228
            ++K S +E++ I+ LVR+YSASTDLVSLDW+KMKIPPVLPS EH WLFKLMQP+KALLQ 
Sbjct: 181  RKKSSENESEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQA 240

Query: 1227 NENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQD 1048
             ENL++ LGR PTE ELAEATNMS AQV++HLEVG+AARNKLIKHNLRLVLF INKYFQD
Sbjct: 241  KENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQD 300

Query: 1047 FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFG 868
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTY LFWIRHAIIRSMTLSSF RVSFG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 867  LESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQ 688
            LESVR EIQ+AKLEL+FEL R PTEEEII+KVGISPERY EVMRASK V SLHSRH+VTQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVTQ 420

Query: 687  EEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGEI 508
            EEFI+GITD++GV GD+RRQPA            LKPKESLVIRQRYGLDG+GDRTLGEI
Sbjct: 421  EEFINGITDIDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 507  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            AGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+V
Sbjct: 481  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  718 bits (1853), Expect = 0.0
 Identities = 367/517 (70%), Positives = 432/517 (83%), Gaps = 3/517 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAA--QTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIE 1771
            MGVVTVSSSA+  +TP GL+ KF  +Q+  ++PL++AFKADK    ALV PHE IPLPIE
Sbjct: 1    MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 1770 ARKEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVED 1591
              K+H+KRL + +KPSKRV A  TDE S C++E+DYNEAAAKLENIYKLSP TD S+ ED
Sbjct: 61   TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED 120

Query: 1590 VXXXXXXXXXXXXKIS-ADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNAC 1414
            +            +++ ADD+ EK  S + VR   KK KRL+L+KR+ L K K ++  A 
Sbjct: 121  LERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVAS 180

Query: 1413 VRKRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALL 1234
            ++K+++S +E++NI+ LVREYSASTDLVSLDWKKMKIPPVLP +EHAWLFKLMQP+K LL
Sbjct: 181  IQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLL 240

Query: 1233 QVNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYF 1054
            +V +NL++ LGR+PT+GELAEA +MS  QV+RH+EVG+AARNKLIKHNLRLVLFVINKYF
Sbjct: 241  EVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYF 300

Query: 1053 QDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVS 874
            Q+FANGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAI+RSMTLSSF RVS
Sbjct: 301  QEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVS 360

Query: 873  FGLESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAV 694
            FGLESVR EIQ+AKLEL+F+L+RLPTEEEIIEKVGISPERY+EVMRASK+V SLH+RHA 
Sbjct: 361  FGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHAT 420

Query: 693  TQEEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLG 514
            TQEE+I+GITDVEGV GD  RQ A            LKPKESLV+RQRYGLDG+GDRTLG
Sbjct: 421  TQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLG 480

Query: 513  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 403
            EIAGNL+ISREMVRKHEVKALMKLKHPARVDYLR+YI
Sbjct: 481  EIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYI 517


>ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nelumbo nucifera]
          Length = 514

 Score =  702 bits (1812), Expect = 0.0
 Identities = 360/514 (70%), Positives = 418/514 (81%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVVTVSSS++QTPLGLS +F  +Q+  K+PLI+AFK DK  + ALV  HE IPLP++  
Sbjct: 1    MGVVTVSSSSSQTPLGLSSRFSVHQTQLKRPLILAFKTDKAKDRALVTHHEPIPLPMDTP 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVX 1585
            KE+QKRL +  KPSKRV    +DEAS+CT+E+DYN+ AAKLE+IYKLSP TD SDV+D  
Sbjct: 61   KENQKRLRRATKPSKRVKVVCSDEASSCTIEMDYNDVAAKLESIYKLSPPTDVSDVDDTD 120

Query: 1584 XXXXXXXXXXXKISADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNACVRK 1405
                       K+   D +  + S   V     K KRL+LD+R+ L++ K +E    +  
Sbjct: 121  RVGRRRRRTRKKLGEADRKTGKESSDNVIRNHNKNKRLSLDRRIALRRKK-EEGAVQLSG 179

Query: 1404 RKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQVN 1225
             KE   E+ +++ LV EYS STDL SLDWKKMKIPPVLPS+EHAWLFKLMQP+ AL Q+ 
Sbjct: 180  VKEGSKEDGDVDKLVGEYSVSTDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMNALFQMK 239

Query: 1224 ENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDF 1045
            ENL + LGR+PT+GELA++TNMS+ QV+R +EVGRAARN+LIKHNLRLVLFVINKYFQ+F
Sbjct: 240  ENLHRDLGREPTDGELADSTNMSVFQVRRCIEVGRAARNRLIKHNLRLVLFVINKYFQEF 299

Query: 1044 ANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFGL 865
            ANGP+FQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAI+RSMTLSSF RVSFGL
Sbjct: 300  ANGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGL 359

Query: 864  ESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQE 685
            ESVR EIQ+AKLELMFEL+RLPTEEEII+KVGISPERY+EV++ASK VFSLHSRHA+TQE
Sbjct: 360  ESVRVEIQRAKLELMFELERLPTEEEIIKKVGISPERYHEVIKASKPVFSLHSRHAITQE 419

Query: 684  EFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGEIA 505
            EFI+GITD+EGV GD RRQPA            LKPKESLVIRQRYGLDG+GDRTLGEIA
Sbjct: 420  EFINGITDIEGVGGDKRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 479

Query: 504  GNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 403
            GNLNISREMVRKHEVKALMKLKHP RVDYLRRYI
Sbjct: 480  GNLNISREMVRKHEVKALMKLKHPTRVDYLRRYI 513


>gb|AKC88737.1| sigma factor [Francoa sonchifolia]
          Length = 513

 Score =  698 bits (1802), Expect = 0.0
 Identities = 359/515 (69%), Positives = 417/515 (80%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVVTVSSS A++PLGLS KF T++   K+P IV+ KADK N  ALVAP EQIPLPI+  
Sbjct: 1    MGVVTVSSSPARSPLGLSTKFSTHRCTLKRPSIVSLKADKTNNIALVAPQEQIPLPIQTP 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVX 1585
            K+ +KRLG+  K SKRV A  TD  S CTLE+D+NEAAAKLENIYKLSP TD SD ED+ 
Sbjct: 61   KKQRKRLGRAIKTSKRVKAVSTDVTSPCTLELDFNEAAAKLENIYKLSPPTDCSDTEDID 120

Query: 1584 XXXXXXXXXXXKISADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNACVRK 1405
                           DD  EKRTS + VR+R KK KRL+LD+R+ L +NK  + ++  R 
Sbjct: 121  GMKSRHRKRMN--GGDDTGEKRTSDNVVRNRTKKVKRLSLDRRISLIRNKEGDADSSSRS 178

Query: 1404 RKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQVN 1225
            + +  +EN +++ LVREYSASTDLVSLDWKKMKIPPVL S EHAWLFKLMQP+K LLQ+ 
Sbjct: 179  KIDQKNENYSVDWLVREYSASTDLVSLDWKKMKIPPVLSSLEHAWLFKLMQPMKELLQLK 238

Query: 1224 ENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDF 1045
            ENL +   R+PT+ ELAEA NM++ ++++ ++VGRAARNKLIKHNLRLVLFV+NKYFQDF
Sbjct: 239  ENLHKDFSREPTDYELAEALNMNVIEMRKDMDVGRAARNKLIKHNLRLVLFVMNKYFQDF 298

Query: 1044 ANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFGL 865
            ANGPRFQDLCQAGVKGLITAIDRFEPKRR RLSTYGLFWIRHAI RS+TLSSF RVSFGL
Sbjct: 299  ANGPRFQDLCQAGVKGLITAIDRFEPKRRVRLSTYGLFWIRHAITRSLTLSSFTRVSFGL 358

Query: 864  ESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQE 685
            ESVR EIQ+AKLEL+FEL RLPTE+EIIEKVGIS ERY+EVMRA+K V+SLH++H +T E
Sbjct: 359  ESVRVEIQRAKLELLFELHRLPTEDEIIEKVGISFERYHEVMRAAKPVYSLHAKHMITHE 418

Query: 684  EFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGEIA 505
            EFI+ +TDV+G+ GD RRQPA            LKPKESLVIRQRYGLDG+GDRTLGEIA
Sbjct: 419  EFINALTDVDGIHGDQRRQPALFRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 478

Query: 504  GNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            GNLNISREMVRKHEVKALMKLKHPARVDYLRRY+V
Sbjct: 479  GNLNISREMVRKHEVKALMKLKHPARVDYLRRYLV 513


>ref|XP_012090115.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Jatropha curcas]
            gi|643706039|gb|KDP22171.1| hypothetical protein
            JCGZ_26002 [Jatropha curcas]
          Length = 502

 Score =  697 bits (1800), Expect = 0.0
 Identities = 369/516 (71%), Positives = 417/516 (80%), Gaps = 1/516 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVVT SSSAA+TPLGL+ KF TY+S  K+PLIVAFK DK N TALVAP E+IPLPIE  
Sbjct: 1    MGVVTASSSAARTPLGLNTKFSTYRSTVKRPLIVAFKDDKSNNTALVAPSERIPLPIETP 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVX 1585
            K  +KR GK N           +E  +C LEVDYNEAAAKLENI+KLSP TD +DV+   
Sbjct: 61   KG-KKRRGKTN-----------NEVLSCALEVDYNEAAAKLENIFKLSPTTDTADVDVSD 108

Query: 1584 XXXXXXXXXXXKISADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDE-VNACVR 1408
                           D +  K  +   VR+R KK KRL+LD R+ L+KN  +E + + +R
Sbjct: 109  LSKKGKQKKRKTREDDGKAGKGANKPIVRNRAKKTKRLDLDTRIALRKNNEEEKITSTIR 168

Query: 1407 KRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQV 1228
            K+K++  EN+ IE LVREYSASTDLVSLDWKKMKIPPVL STEHAWLFKLMQP+KALLQV
Sbjct: 169  KKKDTRHENEKIEELVREYSASTDLVSLDWKKMKIPPVLHSTEHAWLFKLMQPMKALLQV 228

Query: 1227 NENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQD 1048
             ++L+ +LGR+PTEGELAEATNM + QV++ LE GRAARNKLIKHNLRLVLFVINKYFQD
Sbjct: 229  KDHLQTNLGREPTEGELAEATNMKVEQVRKQLEAGRAARNKLIKHNLRLVLFVINKYFQD 288

Query: 1047 FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFG 868
            FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY LFWIRHAIIRSMTLSSF RVSFG
Sbjct: 289  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFG 348

Query: 867  LESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQ 688
            LESVRAEIQKA+LEL+ EL+R PTE EIIE+VGISPERY+EVMRASK ++SLHSRH VTQ
Sbjct: 349  LESVRAEIQKARLELLIELQRQPTEVEIIERVGISPERYHEVMRASKPIYSLHSRHVVTQ 408

Query: 687  EEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGEI 508
            EEFI+GITD +G  GDNRRQPA            LKPKES+VIRQRYGLDG+GDRTLGEI
Sbjct: 409  EEFINGITDTDG--GDNRRQPALLRLALDDVLDSLKPKESVVIRQRYGLDGKGDRTLGEI 466

Query: 507  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            AGNLNISREMVRK+EVKAL+KLKHPARVDYLRRY+V
Sbjct: 467  AGNLNISREMVRKYEVKALLKLKHPARVDYLRRYVV 502


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
            trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
            sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score =  695 bits (1793), Expect = 0.0
 Identities = 370/516 (71%), Positives = 419/516 (81%), Gaps = 1/516 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVV+VSSSA++TPLGLS KF TY S +K+PLIVAFKA+K N T+LVAPHEQIPLP+E  
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKANKSNNTSLVAPHEQIPLPVETT 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVX 1585
            K  +KRLGK  K S R+ A  T E S CTL VDYNEAAAKLENIYKLSP TD SDVED  
Sbjct: 61   KG-KKRLGKSKKSSNRLKAVRT-EVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 1584 XXXXXXXXXXXKISADDEE-EKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNACVR 1408
                       KIS  D+E E RT    VR+R KKAKRL+L+KR+ L+    +++ +   
Sbjct: 119  GVIRRGRQRKRKISEGDKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSAG 178

Query: 1407 KRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQV 1228
            KRK+  +EN+ I++LVREYSASTDLVSLDWKKMKIPPVL S+EH WLFKLMQP+KALLQV
Sbjct: 179  KRKDRKNENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQV 238

Query: 1227 NENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQD 1048
             E+L+++LG +PT+ ELA+ATNM + QV++ + VGRAARNKLIKHNLRLVLFVI KYFQD
Sbjct: 239  KEHLQENLGGEPTDVELAKATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQD 298

Query: 1047 FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFG 868
            FANG +FQD CQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSF RVSFG
Sbjct: 299  FANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 358

Query: 867  LESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQ 688
            LES+R+EIQKAKLEL F+LKR P E+EIIEKV ISPERY+EV RASK V SLHSRH  TQ
Sbjct: 359  LESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQ 418

Query: 687  EEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGEI 508
            EEFI GI DV+G  GD+RRQ A            LKPKESLV+RQRYGLDG+GDRTLGEI
Sbjct: 419  EEFIGGIADVDG--GDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEI 476

Query: 507  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            AGNLNISREMVRKHEVKALMKLKHP RVDYLRRY+V
Sbjct: 477  AGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYVV 512


>gb|AKC88745.1| sigma factor [Melianthus villosus]
          Length = 513

 Score =  694 bits (1790), Expect = 0.0
 Identities = 360/515 (69%), Positives = 417/515 (80%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            M VVTVSSS A++PLGLS K   ++   K+PLIVAFK DK N+ ALVAPH+QIPLP+   
Sbjct: 1    MEVVTVSSSVARSPLGLSTKPSNHRCTLKRPLIVAFKTDKINDIALVAPHDQIPLPVANA 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVX 1585
            K+ QKRLG+  KPSKR      DE+S CTLE+D+NEAAAKLENIYKLSP +D SDVE+  
Sbjct: 61   KKQQKRLGRGTKPSKRTKVVYADESSPCTLELDFNEAAAKLENIYKLSPPSDTSDVENQD 120

Query: 1584 XXXXXXXXXXXKISADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNACVRK 1405
                           DD  +KRT+ + VR++ KK KRL+LDKRV L ++K D V+   R+
Sbjct: 121  GLMDRGRRRRRN-RGDDTTQKRTTDNVVRNQTKKVKRLSLDKRVALIRHKED-VDVSRRR 178

Query: 1404 RKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQVN 1225
            + +  +++ NIE LVREYS+STD+ SLDWKKMKIPPVL S+EH+WLFKLMQP+K LL   
Sbjct: 179  KTDHKNKSYNIEILVREYSSSTDMASLDWKKMKIPPVLSSSEHSWLFKLMQPMKGLLNFK 238

Query: 1224 ENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDF 1045
            ENLK  LGR+PT+ ELA+ATNM++ ++K+ +EVGRAARNKLIKHNLRLVLFVINKYFQDF
Sbjct: 239  ENLKTDLGREPTDYELADATNMNVVKLKKEMEVGRAARNKLIKHNLRLVLFVINKYFQDF 298

Query: 1044 ANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFGL 865
            ANG RFQDLCQAGVKGLITAIDRFEPKR+FRLSTYGLFWIRHAI RSMTLSSF RVSFGL
Sbjct: 299  ANGSRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAITRSMTLSSFTRVSFGL 358

Query: 864  ESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQE 685
            ESVRAEIQKAK EL+F L+RLPTEEEIIEKVG+SPERY+EV+RASK V SLH++H +TQE
Sbjct: 359  ESVRAEIQKAKFELLFRLQRLPTEEEIIEKVGVSPERYHEVLRASKPVLSLHAKHMITQE 418

Query: 684  EFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGEIA 505
            EFI+ ITDV+GV  D RRQPA            LKPKESLVIRQRYGLDG+GDRTLGEIA
Sbjct: 419  EFINVITDVDGVGADQRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 478

Query: 504  GNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            GNLNISREMVRKHEVKALMKLKHPARVDYLR Y+V
Sbjct: 479  GNLNISREMVRKHEVKALMKLKHPARVDYLRPYLV 513


>ref|XP_011001910.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Populus euphratica]
          Length = 512

 Score =  693 bits (1788), Expect = 0.0
 Identities = 370/516 (71%), Positives = 417/516 (80%), Gaps = 1/516 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVV+VSSSA++TPLGLS KF TY S +K+PLIVAFKADK +  + VAPHEQIPLPIE  
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSSNPSFVAPHEQIPLPIETT 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVX 1585
            K  +KRLGK  K S R+ A  T E S CTL VDYNEAAAKLENIYKLSP TD SDVED  
Sbjct: 61   KG-KKRLGKSKKSSNRLKAVRT-EVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 1584 XXXXXXXXXXXKISADDEE-EKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNACVR 1408
                       KIS  D+E E RTS   VR+R KKAKRL+L+KR+ L+    +++     
Sbjct: 119  GVIRRGRQRKRKISEGDKEAEDRTSKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVTSAG 178

Query: 1407 KRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQV 1228
            KRK+  +EN+ I+ L+REYSASTDLVSLDWKKMKIPPVL S+EH WLFKLMQP+KALLQV
Sbjct: 179  KRKDRKNENEKIDELLREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQV 238

Query: 1227 NENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQD 1048
             E+L+++LGR+PT+ ELA+AT M + QV++ + VGRAARNKLIKHNLRLVLFVI KYFQD
Sbjct: 239  KEHLQENLGREPTDVELAKATTMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQD 298

Query: 1047 FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFG 868
            FANG +FQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSF RVSFG
Sbjct: 299  FANGTKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 358

Query: 867  LESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQ 688
            LES+R+EIQKAKLEL F+LKR P E+EIIEKV ISPERY+EV RASK V SLHSRH  TQ
Sbjct: 359  LESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQ 418

Query: 687  EEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGEI 508
            EEFI GI DV+G  GD+RRQ A            LKPKESLV+RQRYGLDG+GDRTLGEI
Sbjct: 419  EEFIGGIADVDG--GDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEI 476

Query: 507  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            AGNLNISREMVRKHEVKALMKLKHP RVDYLRRY+V
Sbjct: 477  AGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYVV 512


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  691 bits (1782), Expect = 0.0
 Identities = 363/515 (70%), Positives = 417/515 (80%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVVT SSSAA+TPLGLS KF TY+S  K+ L+VAFK DK N+  LV P E+ PLPIE  
Sbjct: 1    MGVVTASSSAARTPLGLSLKFSTYRSTVKRSLVVAFKEDKANDIILVPPRERTPLPIETS 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVX 1585
            K  +KR GK N+           E S+ TLEVDYNEAAAKLENIYKLSP TD SDV+   
Sbjct: 61   KG-KKRRGKTNR-----------EVSSGTLEVDYNEAAAKLENIYKLSPATDTSDVDING 108

Query: 1584 XXXXXXXXXXXKISADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNACVRK 1405
                           D++ E RTS + VR+R KK KRL+LDKR+ LKKN+ +EV   +RK
Sbjct: 109  LIRKGRQRKRKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIRK 168

Query: 1404 RKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQVN 1225
            +K+S  +N+ IE LVR YSAST+LVSLDW+KMKIPPVLPSTEHAWLFKLMQP+K LL V 
Sbjct: 169  KKDSKDDNEKIEELVRTYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPVK 228

Query: 1224 ENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDF 1045
             +L+++LGR PT+GELAEATNM++ +V++ LEVGRAARNKLIKHNLRLV+FV+NKYFQDF
Sbjct: 229  ADLQKNLGRDPTDGELAEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQDF 288

Query: 1044 ANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFGL 865
            ANGPRFQDLCQAGVKGLITAIDRFEP+RRF+LSTY LFWIRHAIIRSMTLSSF +VSFGL
Sbjct: 289  ANGPRFQDLCQAGVKGLITAIDRFEPQRRFQLSTYSLFWIRHAIIRSMTLSSFTKVSFGL 348

Query: 864  ESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQE 685
            ESVR EIQKAKLEL+ EL+R PTEEEIIE+VGIS ERY+EV+RA+K   SLH+RHAVTQE
Sbjct: 349  ESVRTEIQKAKLELLIELQRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQE 408

Query: 684  EFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGEIA 505
            EFI+GITD++G  GDNRRQPA            LKPKESLVIRQRYGLDG+GDRTLGEIA
Sbjct: 409  EFINGITDIDG--GDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 466

Query: 504  GNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            GNLNISREMVRK+EVKALMKLKHPARVDYLRRY+V
Sbjct: 467  GNLNISREMVRKYEVKALMKLKHPARVDYLRRYVV 501


>gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium raimondii]
          Length = 547

 Score =  689 bits (1779), Expect = 0.0
 Identities = 364/528 (68%), Positives = 414/528 (78%), Gaps = 1/528 (0%)
 Frame = -2

Query: 1980 VHLLSFYQR*LGMGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVA 1801
            V  L+F +R   MGVV+VSSSAA+TP+GL  KF T +   ++P IVAFKADK N TALV 
Sbjct: 20   VFCLNFAKRQFEMGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVT 79

Query: 1800 PHEQIPLPIEARKEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLS 1621
              +   LP+E  KEH KR GK  K SK VN   TDE S  T++VDYNEAAAKLENIYKLS
Sbjct: 80   LRDHNLLPVETAKEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLS 139

Query: 1620 PMTDASDVEDVXXXXXXXXXXXXKIS-ADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELK 1444
            P T   D +              +   +D + +       VRS+ KK +RL LDKR+ELK
Sbjct: 140  PSTQTFDEKGSEGETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELK 199

Query: 1443 KNKVDEVNACVRKRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLF 1264
            KN+ ++     + +K   +E++ I+ LVR+YSASTDLVSLDWKKMK+PPVLPSTEH WLF
Sbjct: 200  KNREEKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLF 259

Query: 1263 KLMQPLKALLQVNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLR 1084
            KLMQP+KALL+  ENL++ LGR PTE ELAEATN S AQV+R LEVGRAARNKLIKHNLR
Sbjct: 260  KLMQPMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLR 319

Query: 1083 LVLFVINKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRS 904
            LVLFVI KYFQDFANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRS
Sbjct: 320  LVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRS 379

Query: 903  MTLSSFQRVSFGLESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKA 724
            MTLSSF RVSFGLESVR EIQ+AKLEL+FEL R PT++E+I++VGISPERY EVMRASK 
Sbjct: 380  MTLSSFTRVSFGLESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKP 439

Query: 723  VFSLHSRHAVTQEEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYG 544
            V SLH RH+VTQEEFI GITDV+GV GD+RRQPA            LKPKESLVIRQRYG
Sbjct: 440  VASLHLRHSVTQEEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYG 499

Query: 543  LDGRGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            LDG+GDRTLGEIAGNL+ISREMVRKHEVKALMKLKHPARVDYLRRY+V
Sbjct: 500  LDGKGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 547


>gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 516

 Score =  689 bits (1778), Expect = 0.0
 Identities = 361/516 (69%), Positives = 408/516 (79%), Gaps = 1/516 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVV+VSSSAA+TP+GL  KF T +   ++P I+AFKADK N TALV   +   LP+E  
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIMAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVE-DV 1588
            KEH KR GK  K SK VN   TDE S  T++VDYNEAAAKLENIYKLSP T   D +   
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 1587 XXXXXXXXXXXXKISADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNACVR 1408
                           +D + +       VRS+ KK +RL LDKR+ELKKN+ ++     +
Sbjct: 121  GETKGRHLRRKRSTESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 1407 KRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQV 1228
             +K   +E++ I+ LVR+YSASTDLVSLDWKKMKIPPVLPSTEH WLFKLMQP+KALL+ 
Sbjct: 181  SKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLEA 240

Query: 1227 NENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQD 1048
             ENL++ LGR PTE ELAEATN S AQV+R LEVGRAARNKLIKHNLRLVLFVINKYFQD
Sbjct: 241  KENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFQD 300

Query: 1047 FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFG 868
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMTLSSF RVSFG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 867  LESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQ 688
            LESVR EIQ+AKLEL+FEL R PT++E+I++VGISPERY EVMRASK V SLH RH+VTQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVTQ 420

Query: 687  EEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGEI 508
            EEFI GITDV+GV GD+RRQPA            LKPKESLVIRQRYGLDG+GDRTLGEI
Sbjct: 421  EEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 507  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            +GNLNISREMVRKHEVKALMKLKHPARVDYLRRY+V
Sbjct: 481  SGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>ref|XP_008465379.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Cucumis melo]
          Length = 511

 Score =  688 bits (1775), Expect = 0.0
 Identities = 355/517 (68%), Positives = 415/517 (80%), Gaps = 2/517 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVVTVSSSAA+TP  LS KF  + S  K+P IVAFKADK   T LV+PHEQ+ LP+E+ 
Sbjct: 1    MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVX 1585
               +KR G  +KP KRV A + DEA++C+L++DYNEAAAKLENI+KLSPMT+ SD+E   
Sbjct: 61   NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 1584 XXXXXXXXXXXKISADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDE--VNACV 1411
                             + +KR S   VR++ K+ KRL+LDKR+ LK  +  E    + +
Sbjct: 121  GRSKRGQ------QRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKRKAERKSGSFI 174

Query: 1410 RKRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQ 1231
            ++ KE+ +E+D I+ LVR+YSASTDLVSLDWKKMKIPPVLPS+EH  LFKL+QP+KAL++
Sbjct: 175  KETKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIE 234

Query: 1230 VNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQ 1051
            V E L++ LGR+PTE ELA ATNM++ QV+R LEVGRAARNKLIKHNLRLVLFVINKYF+
Sbjct: 235  VQEELQKELGREPTEAELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFE 294

Query: 1050 DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSF 871
            DFA GP+FQDLCQAGVKGLITAIDRFEPKR+FRLSTY LFWIRHAIIRSMTLSSF RVSF
Sbjct: 295  DFATGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSF 354

Query: 870  GLESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVT 691
            GL+SVR EIQ+AKLEL+ EL RLPTEEEII KVGISPERY EVMRA+K V+SLHSRH+ T
Sbjct: 355  GLDSVRVEIQRAKLELLCELHRLPTEEEIIAKVGISPERYLEVMRATKPVYSLHSRHSTT 414

Query: 690  QEEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGE 511
             EE I+GITDVEG  GDNRRQPA            LKPKESLVIRQRYGLDG+G+RTLGE
Sbjct: 415  SEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGE 474

Query: 510  IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY++
Sbjct: 475  IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI 511


>ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium raimondii]
            gi|823214552|ref|XP_012440030.1| PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Gossypium raimondii] gi|763785552|gb|KJB52623.1|
            hypothetical protein B456_008G270500 [Gossypium
            raimondii] gi|763785553|gb|KJB52624.1| hypothetical
            protein B456_008G270500 [Gossypium raimondii]
          Length = 516

 Score =  685 bits (1768), Expect = 0.0
 Identities = 360/516 (69%), Positives = 408/516 (79%), Gaps = 1/516 (0%)
 Frame = -2

Query: 1944 MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 1765
            MGVV+VSSSAA+TP+GL  KF T +   ++P IVAFKADK N TALV   +   LP+E  
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 1764 KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVX 1585
            KEH KR GK  K SK VN   TDE S  T++VDYNEAAAKLENIYKLSP T   D +   
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 1584 XXXXXXXXXXXKIS-ADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNACVR 1408
                       +   +D + +       VRS+ KK +RL LDKR+ELKKN+ ++     +
Sbjct: 121  GETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 1407 KRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQV 1228
             +K   +E++ I+ LVR+YSASTDLVSLDWKKMK+PPVLPSTEH WLFKLMQP+KALL+ 
Sbjct: 181  SKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQPMKALLEA 240

Query: 1227 NENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQD 1048
             ENL++ LGR PTE ELAEATN S AQV+R LEVGRAARNKLIKHNLRLVLFVI KYFQD
Sbjct: 241  KENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQD 300

Query: 1047 FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFG 868
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMTLSSF RVSFG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 867  LESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQ 688
            LESVR EIQ+AKLEL+FEL R PT++E+I++VGISPERY EVMRASK V SLH RH+VTQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVTQ 420

Query: 687  EEFIDGITDVEGVEGDNRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGRGDRTLGEI 508
            EEFI GITDV+GV GD+RRQPA            LKPKESLVIRQRYGLDG+GDRTLGEI
Sbjct: 421  EEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 507  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 400
            AGNL+ISREMVRKHEVKALMKLKHPARVDYLRRY+V
Sbjct: 481  AGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 516