BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00004953
         (1803 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudouridine synthase 2, chl...   612   e-172
ref|XP_009798870.1| PREDICTED: RNA pseudouridine synthase 2, chl...   590   e-165
ref|XP_010320443.1| PREDICTED: RNA pseudouridine synthase 2, chl...   582   e-163
ref|XP_004238386.1| PREDICTED: RNA pseudouridine synthase 2, chl...   582   e-163
ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chl...   580   e-162
ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chl...   578   e-162
ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chl...   578   e-162
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   575   e-161
ref|XP_009620048.1| PREDICTED: RNA pseudouridine synthase 2, chl...   575   e-161
ref|XP_012444688.1| PREDICTED: RNA pseudouridine synthase 2, chl...   568   e-159
ref|XP_007017900.1| Pseudouridine synthase family protein isofor...   568   e-159
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   565   e-158
gb|KHG01344.1| hypothetical protein F383_22314 [Gossypium arboreum]   565   e-158
ref|XP_010320444.1| PREDICTED: RNA pseudouridine synthase 2, chl...   563   e-157
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   563   e-157
ref|XP_012078835.1| PREDICTED: RNA pseudouridine synthase 2, chl...   562   e-157
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   560   e-156
ref|XP_011034961.1| PREDICTED: RNA pseudouridine synthase 2, chl...   559   e-156
ref|XP_010063294.1| PREDICTED: RNA pseudouridine synthase 2, chl...   549   e-153
ref|XP_011649466.1| PREDICTED: RNA pseudouridine synthase 2, chl...   548   e-153

>ref|XP_003634352.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Vitis vinifera] gi|302141717|emb|CBI18920.3| unnamed
            protein product [Vitis vinifera]
          Length = 433

 Score =  612 bits (1579), Expect = e-172
 Identities = 313/422 (74%), Positives = 351/422 (83%), Gaps = 3/422 (0%)
 Frame = -2

Query: 1694 VFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEETV 1515
            + FP NPK        S SR+ RILRA S ST   +      +++G R NY+GVRLEETV
Sbjct: 21   LLFPRNPK--------SCSRVFRILRACSNSTDEPLV-----SVSGRRTNYAGVRLEETV 67

Query: 1514 A---VDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCT 1344
                 DS KLRLDSWISSR+ GISRARVQSSIRSGLVSVN RIVDKVSH ++AGD+VNCT
Sbjct: 68   VDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCT 127

Query: 1343 ISELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTV 1164
            ISELQPLRAEPE+IPLDIVYED+HVLVVNKPAHMVVHPAPGNA+GTLVNGILHHCSLPTV
Sbjct: 128  ISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTV 187

Query: 1163 AFSNHDGLSDSEDNCDDGLGYFSVDQSSSTCQASVRPGIVHRLDKGTSGLLVVAKNELSH 984
            A  N D  S+ +D  DD    F+  Q+  TC+ ++RPGIVHRLDKGTSGLLVVAK+E SH
Sbjct: 188  ALPNRD--SEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSH 245

Query: 983  AHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQGRHA 804
            AHLS+QFKLH+IHRVYISLTSGVP+PL+GRV+IP+GRD NNRIRMTA+PGP  S Q RHA
Sbjct: 246  AHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHA 305

Query: 803  ASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALSLLWP 624
            ASRYKVIE+LA GGSALVEWRLETGRTHQIRAHAK+LGIPLLGDE+YGGTK+MALSLL P
Sbjct: 306  ASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRP 365

Query: 623  RTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLRKFST 444
            R PSS HGQL+QLVS  +RPCLHA+AL F HP TGKN+HFSC PP DFAEIL+ LRK ST
Sbjct: 366  RIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKIST 425

Query: 443  AK 438
             K
Sbjct: 426  EK 427


>ref|XP_009798870.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            sylvestris]
          Length = 431

 Score =  590 bits (1520), Expect = e-165
 Identities = 301/426 (70%), Positives = 349/426 (81%), Gaps = 7/426 (1%)
 Frame = -2

Query: 1694 VFFPP-NPKITACPPFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEET 1518
            +F PP NPK     PF+ +   S I RA S   G S SD +   + G R+NYSGV+LEET
Sbjct: 9    IFVPPQNPK-----PFSFSRVSSFIFRAFSKFPGDSDSDDSPSEITGRRSNYSGVKLEET 63

Query: 1517 VAVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTIS 1338
            V V + KLRLDSW+SSR++GISRARVQSSIRSGLVSVNGR+ DKVSH VK GD+VNCTI+
Sbjct: 64   VDVKTGKLRLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIA 123

Query: 1337 ELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAF 1158
            +L+PLRAEPE+IPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLV+GILHHCSLPTV+F
Sbjct: 124  DLKPLRAEPEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSF 183

Query: 1157 SNHDGLSDSEDNCDDGLGYFSVDQS------SSTCQASVRPGIVHRLDKGTSGLLVVAKN 996
               + LSD ED+ DD L  FS DQS      S  C+ SVRPGIVHRLDKGTSGLLVVAK 
Sbjct: 184  PGEEVLSDVEDDSDDELNLFSTDQSPYGVDSSVVCEPSVRPGIVHRLDKGTSGLLVVAKT 243

Query: 995  ELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQ 816
            E S A+L++QFK HTI RVY+S+T GVP+ ++GR+DIPIGRDSNNRIRM AIPG  K  +
Sbjct: 244  EQSLANLAEQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMIAIPGSHKGGR 303

Query: 815  GRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALS 636
             R+AASRYKVIE LAGGGSALVEWRLETGRTHQIRAHAK+LGIPLLGDE+YGGTK+MALS
Sbjct: 304  ARNAASRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALS 363

Query: 635  LLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLR 456
            LL P+TP   HG+LSQL+S  ERPCLHA+ L F+HP+TG+NIHF+  PP+DFAE+L++LR
Sbjct: 364  LLQPKTPPRSHGKLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLSELR 423

Query: 455  KFSTAK 438
              ST K
Sbjct: 424  AISTEK 429


>ref|XP_010320443.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum lycopersicum]
          Length = 431

 Score =  582 bits (1499), Expect = e-163
 Identities = 297/426 (69%), Positives = 342/426 (80%), Gaps = 6/426 (1%)
 Frame = -2

Query: 1697 FVFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEET 1518
            F   P NPK     P + +   S I RA +   G S SD + + + G R+NYSGV+LEET
Sbjct: 9    FSLLPQNPK-----PISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEET 63

Query: 1517 VAVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTIS 1338
            V   + KLRLDSW+SSR+ G+SRARVQSSIRSGLVSVNGR+ DKVSH VK GD+V+CTI+
Sbjct: 64   VDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIA 123

Query: 1337 ELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAF 1158
            +L+PLRAEPE+IPLDIVYED+HVLVVNKPAHMVVHPAPGNATGTLV+GILHHCSLPTV+F
Sbjct: 124  DLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSF 183

Query: 1157 SNHDGLSDSEDNCDDGLGYFS------VDQSSSTCQASVRPGIVHRLDKGTSGLLVVAKN 996
               + LSD ED  DD L  FS       D SS  C++SVRPGIVHRLDKGTSGLLVVAKN
Sbjct: 184  PGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKN 243

Query: 995  ELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQ 816
            E S A L++QFK HTI RVY+S+T GVP+ +AGRVDIPIGRDSNNRIRM AIPG  KS +
Sbjct: 244  EHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGK 303

Query: 815  GRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALS 636
             RHA SRYKVIE LAGGGSALVEWRLETGRTHQIRAHAKHLGIPL+GDE+YGGTK+MALS
Sbjct: 304  SRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALS 363

Query: 635  LLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLR 456
            LL P+TP   HG+LSQLVS+ +RPCLHA+ L F+HP TG+NIHF+  PP DFAEIL++LR
Sbjct: 364  LLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELR 423

Query: 455  KFSTAK 438
               T K
Sbjct: 424  AIKTEK 429


>ref|XP_004238386.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Solanum lycopersicum]
          Length = 436

 Score =  582 bits (1499), Expect = e-163
 Identities = 297/426 (69%), Positives = 342/426 (80%), Gaps = 6/426 (1%)
 Frame = -2

Query: 1697 FVFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEET 1518
            F   P NPK     P + +   S I RA +   G S SD + + + G R+NYSGV+LEET
Sbjct: 9    FSLLPQNPK-----PISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEET 63

Query: 1517 VAVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTIS 1338
            V   + KLRLDSW+SSR+ G+SRARVQSSIRSGLVSVNGR+ DKVSH VK GD+V+CTI+
Sbjct: 64   VDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIA 123

Query: 1337 ELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAF 1158
            +L+PLRAEPE+IPLDIVYED+HVLVVNKPAHMVVHPAPGNATGTLV+GILHHCSLPTV+F
Sbjct: 124  DLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSF 183

Query: 1157 SNHDGLSDSEDNCDDGLGYFS------VDQSSSTCQASVRPGIVHRLDKGTSGLLVVAKN 996
               + LSD ED  DD L  FS       D SS  C++SVRPGIVHRLDKGTSGLLVVAKN
Sbjct: 184  PGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKN 243

Query: 995  ELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQ 816
            E S A L++QFK HTI RVY+S+T GVP+ +AGRVDIPIGRDSNNRIRM AIPG  KS +
Sbjct: 244  EHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGK 303

Query: 815  GRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALS 636
             RHA SRYKVIE LAGGGSALVEWRLETGRTHQIRAHAKHLGIPL+GDE+YGGTK+MALS
Sbjct: 304  SRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALS 363

Query: 635  LLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLR 456
            LL P+TP   HG+LSQLVS+ +RPCLHA+ L F+HP TG+NIHF+  PP DFAEIL++LR
Sbjct: 364  LLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELR 423

Query: 455  KFSTAK 438
               T K
Sbjct: 424  AIKTEK 429


>ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  580 bits (1496), Expect = e-162
 Identities = 289/413 (69%), Positives = 338/413 (81%), Gaps = 6/413 (1%)
 Frame = -2

Query: 1655 PFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEETVAVDSRKLRLDSWI 1476
            P ASTSR  R+L  + +STG S SD         R N++GV LE+TV + S K R+DSWI
Sbjct: 28   PRASTSRFFRVLNCSFSSTGESASDYQSSEPQNRRGNFAGVCLEDTVEISSVKSRIDSWI 87

Query: 1475 SSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTISELQPLRAEPENIPL 1296
            SSR+ GISRARVQSSI+SGLVSVNGRI+DKVSH ++AGD+VNCTI ELQPLRAEPE+IPL
Sbjct: 88   SSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPL 147

Query: 1295 DIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDGLSDSEDNCD 1116
            DIVYED+ VLVVNKPAHMVVHPAPGNA GTLVNGILHHCSLP VA +N   LS+++D  D
Sbjct: 148  DIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSETDDISD 207

Query: 1115 DGLGYFSVDQ------SSSTCQASVRPGIVHRLDKGTSGLLVVAKNELSHAHLSDQFKLH 954
            D    FS  Q      +S+ C+ SVRPGIVHRLDKGTSGLLVVAK+E SHAHLS+QFKLH
Sbjct: 208  DESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH 267

Query: 953  TIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQGRHAASRYKVIEVL 774
            TI+R+Y+SLT GVPS  +GR+++PIGRD +NRIRM A+P P  S+Q RHAASRY+V+EVL
Sbjct: 268  TINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVL 327

Query: 773  AGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALSLLWPRTPSSCHGQL 594
            AGGGSALVEWRLETGRTHQIRAHAK+LGIPLLGDE+YGGT++MALSLL  R+ SS HG L
Sbjct: 328  AGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDL 387

Query: 593  SQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLRKFSTAKP 435
            SQLVS+ +RPCLHA  L FKHPHTG+N+ FSCPPP+DF E+L+QLR     KP
Sbjct: 388  SQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIGIEKP 440


>ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  578 bits (1489), Expect = e-162
 Identities = 288/412 (69%), Positives = 337/412 (81%), Gaps = 6/412 (1%)
 Frame = -2

Query: 1655 PFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEETVAVDSRKLRLDSWI 1476
            P ASTSR  R+L  + +STG S SD         R N++GV LE+TV + S K R+DSWI
Sbjct: 28   PRASTSRFFRVLNCSFSSTGESASDYQSSEPQNRRGNFAGVCLEDTVEISSVKSRIDSWI 87

Query: 1475 SSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTISELQPLRAEPENIPL 1296
            SSR+ GISRARVQSSI+SGLVSVNGRI+DKVSH ++AGD+VNCTI ELQPLRAEPE+IPL
Sbjct: 88   SSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPL 147

Query: 1295 DIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDGLSDSEDNCD 1116
            DIVYED+ VLVVNKPAHMVVHPAPGNA GTLVNGILHHCSLP VA +N   LS+++D  D
Sbjct: 148  DIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSETDDISD 207

Query: 1115 DGLGYFSVDQ------SSSTCQASVRPGIVHRLDKGTSGLLVVAKNELSHAHLSDQFKLH 954
            D    FS  Q      +S+ C+ SVRPGIVHRLDKGTSGLLVVAK+E SHAHLS+QFKLH
Sbjct: 208  DESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH 267

Query: 953  TIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQGRHAASRYKVIEVL 774
            TI+R+Y+SLT GVPS  +GR+++PIGRD +NRIRM A+P P  S+Q RHAASRY+V+EVL
Sbjct: 268  TINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVL 327

Query: 773  AGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALSLLWPRTPSSCHGQL 594
            AGGGSALVEWRLETGRTHQIRAHAK+LGIPLLGDE+YGGT++MALSLL  R+ SS HG L
Sbjct: 328  AGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDL 387

Query: 593  SQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLRKFSTAK 438
            SQLVS+ +RPCLHA  L FKHPHTG+N+ FSCPPP+DF E+L+QLR     K
Sbjct: 388  SQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIGIEK 439


>ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 471

 Score =  578 bits (1489), Expect = e-162
 Identities = 288/412 (69%), Positives = 337/412 (81%), Gaps = 6/412 (1%)
 Frame = -2

Query: 1655 PFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEETVAVDSRKLRLDSWI 1476
            P ASTSR  R+L  + +STG S SD         R N++GV LE+TV + S K R+DSWI
Sbjct: 28   PRASTSRFFRVLNCSFSSTGESASDYQSSEPQNRRGNFAGVCLEDTVEISSVKSRIDSWI 87

Query: 1475 SSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTISELQPLRAEPENIPL 1296
            SSR+ GISRARVQSSI+SGLVSVNGRI+DKVSH ++AGD+VNCTI ELQPLRAEPE+IPL
Sbjct: 88   SSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPL 147

Query: 1295 DIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDGLSDSEDNCD 1116
            DIVYED+ VLVVNKPAHMVVHPAPGNA GTLVNGILHHCSLP VA +N   LS+++D  D
Sbjct: 148  DIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSETDDISD 207

Query: 1115 DGLGYFSVDQ------SSSTCQASVRPGIVHRLDKGTSGLLVVAKNELSHAHLSDQFKLH 954
            D    FS  Q      +S+ C+ SVRPGIVHRLDKGTSGLLVVAK+E SHAHLS+QFKLH
Sbjct: 208  DESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH 267

Query: 953  TIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQGRHAASRYKVIEVL 774
            TI+R+Y+SLT GVPS  +GR+++PIGRD +NRIRM A+P P  S+Q RHAASRY+V+EVL
Sbjct: 268  TINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVL 327

Query: 773  AGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALSLLWPRTPSSCHGQL 594
            AGGGSALVEWRLETGRTHQIRAHAK+LGIPLLGDE+YGGT++MALSLL  R+ SS HG L
Sbjct: 328  AGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDL 387

Query: 593  SQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLRKFSTAK 438
            SQLVS+ +RPCLHA  L FKHPHTG+N+ FSCPPP+DF E+L+QLR     K
Sbjct: 388  SQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIGIEK 439


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
            tuberosum]
          Length = 431

 Score =  575 bits (1482), Expect = e-161
 Identities = 294/426 (69%), Positives = 343/426 (80%), Gaps = 6/426 (1%)
 Frame = -2

Query: 1697 FVFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEET 1518
            F   P NPK     PF+ +   S I RA +   G S SD + + + G R+NYSGV+LEET
Sbjct: 9    FSLLPQNPK-----PFSLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEET 63

Query: 1517 VAVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTIS 1338
            V   + KLRLDSW+SSR+ G+SRARVQSSIRSGLVSVNGR+ DKVSH VK GD+V+CTI+
Sbjct: 64   VDGKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIA 123

Query: 1337 ELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAF 1158
            +L+PLRAEPE+IPLDIV+ED+HVLVVNKPAHMVVHPAPGNATGTLV+GILHHCSLPT++F
Sbjct: 124  DLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTISF 183

Query: 1157 SNHDGLSDSEDNCDDGLGYFS------VDQSSSTCQASVRPGIVHRLDKGTSGLLVVAKN 996
               + LSD+ED  DD L  FS       D SS  C++SVRPGIVHRLDKGTSGLLVVAKN
Sbjct: 184  LGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKN 243

Query: 995  ELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQ 816
            E S A L++QFK HTI RVY+S+T GVP+ +AGRVDIPIGRDSNNRIRM AIPG  KS +
Sbjct: 244  ENSLASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGK 303

Query: 815  GRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALS 636
             RHA SRYKVIE LA GGSALVEWRLETGRTHQIRAHAK+LGIPL+GDE+YGGTK+MALS
Sbjct: 304  SRHAVSRYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALS 363

Query: 635  LLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLR 456
            LL P+TP   HG+LSQLVS+ +RPCLHA+ L F+HP TG+NIHF+  PP DFAEIL+ LR
Sbjct: 364  LLQPKTPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSYLR 423

Query: 455  KFSTAK 438
              +T K
Sbjct: 424  AINTEK 429


>ref|XP_009620048.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            tomentosiformis]
          Length = 431

 Score =  575 bits (1481), Expect = e-161
 Identities = 294/433 (67%), Positives = 345/433 (79%), Gaps = 6/433 (1%)
 Frame = -2

Query: 1718 VTSPSLFFVFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYS 1539
            + S S+F    P NPK     PF+ +   S I+RA S   G S SD + + +   ++NYS
Sbjct: 4    LNSTSIFV--HPQNPK-----PFSFSRVSSFIIRAFSKFPGDSDSDDSPDEIQSRKSNYS 56

Query: 1538 GVRLEETVAVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGD 1359
            GV+LEETV + + KLRLDSW+SSR+ GISRARVQSSIRSGLVSVNGR+ DKVSH VK GD
Sbjct: 57   GVKLEETVDIKTGKLRLDSWVSSRIDGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGD 116

Query: 1358 RVNCTISELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 1179
            +VNCTI++L+PLRAEPE+IPLDIVYEDDHVLVVNKPAHMVVHPAPGN TGTLV+GILHHC
Sbjct: 117  KVNCTIADLKPLRAEPEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNVTGTLVSGILHHC 176

Query: 1178 SLPTVAFSNHDGLSDSEDNCDDGLGYFSVDQSSSTCQAS------VRPGIVHRLDKGTSG 1017
            SLPT++F   + LSD ED   D L  FS DQS +   AS      +RPGIVHRLDKGTSG
Sbjct: 177  SLPTISFPGEEVLSDVEDASGDELNMFSADQSPNGVDASRMYEPSIRPGIVHRLDKGTSG 236

Query: 1016 LLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIP 837
            LLVVAK E S A+L++QFK HTI RVY+S+T GVP+ ++GR+DIPIGRDSNNRIRM AIP
Sbjct: 237  LLVVAKTEQSLANLAEQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIP 296

Query: 836  GPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGG 657
            G  K  + R+AASRYKVIE LAGGGSALVEWRLETGRTHQIRAHAK+LGIPLLGDE+YGG
Sbjct: 297  GSHKGGRARNAASRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGG 356

Query: 656  TKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFA 477
            TK+MALSLL P+TP   HG LSQL+S  ERPCLHA+ L F+HP+TG+NIHF+  PP+DFA
Sbjct: 357  TKNMALSLLQPKTPPRSHGNLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFA 416

Query: 476  EILNQLRKFSTAK 438
            E+L +LR  ST K
Sbjct: 417  EVLTELRAISTEK 429


>ref|XP_012444688.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Gossypium
            raimondii]
          Length = 432

 Score =  568 bits (1464), Expect = e-159
 Identities = 302/439 (68%), Positives = 345/439 (78%), Gaps = 1/439 (0%)
 Frame = -2

Query: 1748 CFPAPLTKAFVTSPSLFFVFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDE 1569
            C P P +KA   SPS F +    NPK     PF     ISRILRATS ST  +    ++E
Sbjct: 7    CCPFPSSKALQISPS-FLLLSSRNPKFL---PFT----ISRILRATSISTSAT---KHEE 55

Query: 1568 ALAGHRNNYSGVRLEETVAVDSR-KLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIV 1392
             +   R +Y+GV+LEETV    + KLRLDSWISSR+ GISRARVQSSI+SGLV VNGR+V
Sbjct: 56   PI---RTSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVKVNGRVV 112

Query: 1391 DKVSHNVKAGDRVNCTISELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAT 1212
            DKVSH+++AGD+V+C IS+LQPL+AEPE+IPLDIV+EDDHVLVVNKP+HMVVHPAPGNA 
Sbjct: 113  DKVSHSLRAGDKVDCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAPGNAN 172

Query: 1211 GTLVNGILHHCSLPTVAFSNHDGLSDSEDNCDDGLGYFSVDQSSSTCQASVRPGIVHRLD 1032
            GTLVNGILHHCSLPTVA S  + L D+ED  DD    F     +S   ASVRPGIVHRLD
Sbjct: 173  GTLVNGILHHCSLPTVASSEKEVLFDTEDMSDDEQDIF---HGASAGAASVRPGIVHRLD 229

Query: 1031 KGTSGLLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIR 852
            KGTSGLLVVAK+E SHAHLS+QFK HTI RVYISLT GVPS  +GRVDIPIGRDSNNRIR
Sbjct: 230  KGTSGLLVVAKDEYSHAHLSEQFKQHTIQRVYISLTCGVPSAASGRVDIPIGRDSNNRIR 289

Query: 851  MTAIPGPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGD 672
            M A+PG     Q RHAASRYKVIEVLAGGGSALV+WRLETGRTHQIRAHAK++GIPLLGD
Sbjct: 290  MVAVPGLSHHGQARHAASRYKVIEVLAGGGSALVQWRLETGRTHQIRAHAKYMGIPLLGD 349

Query: 671  ELYGGTKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPP 492
            E+YGGTK+MALSLL PRTP   + +LS+LVS  ERP LHA+ L F+HPH+G+ + FSCPP
Sbjct: 350  EVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALVLGFEHPHSGEKMRFSCPP 409

Query: 491  PSDFAEILNQLRKFSTAKP 435
            P DF EILN LRK    KP
Sbjct: 410  PPDFGEILNHLRKIGIEKP 428


>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508723228|gb|EOY15125.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  568 bits (1464), Expect = e-159
 Identities = 304/444 (68%), Positives = 346/444 (77%), Gaps = 2/444 (0%)
 Frame = -2

Query: 1748 CFPAPLTKAFVTSPSLFFVFFPPN-PKITACPPFASTSRISRILRATSTSTGVSISDGND 1572
            C P P TKAF  SPS  FVF  P  PK+    PF     +S ILRA +  +    +   +
Sbjct: 7    CCPFPSTKAFQISPS--FVFLSPRYPKLL---PFT----LSGILRARARPSSGCAAKTQE 57

Query: 1571 EALAGHRNNYSGVRLEETV-AVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRI 1395
                  R +Y+GV+LEETV      KLRLDSWISSR+ GISRARVQSSI+SGLV+VNGR+
Sbjct: 58   PI----RTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRV 113

Query: 1394 VDKVSHNVKAGDRVNCTISELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNA 1215
            VDKVSH ++ GD+VNC ISELQPLRAEPE+IPLDIVYEDDHVLVVNKP HMVVHPAPGNA
Sbjct: 114  VDKVSHGLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNA 173

Query: 1214 TGTLVNGILHHCSLPTVAFSNHDGLSDSEDNCDDGLGYFSVDQSSSTCQASVRPGIVHRL 1035
            TGTLVNGILHHCSLPTVA S  + LSD+ED  DD  G+       ++  ASVRPGIVHRL
Sbjct: 174  TGTLVNGILHHCSLPTVALSEKEVLSDTEDVSDDDEGFCY----GASAAASVRPGIVHRL 229

Query: 1034 DKGTSGLLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRI 855
            DKGTSGLLVVAK+E SH+HLS+QFK HTI RVYISLT GVPSP AGRVDI IGRDSNNR+
Sbjct: 230  DKGTSGLLVVAKDEHSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRV 289

Query: 854  RMTAIPGPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLG 675
            RM A+PG     + RHAASRYKVIEVLAGGGSAL++WRLETGRTHQIRAHAK++GIPLLG
Sbjct: 290  RMIAVPGLNHHGRARHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLG 349

Query: 674  DELYGGTKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCP 495
            DE+YGGTKSMALSLL PRTP + + QLS+LVS  ERP LHA+ L F+HPH+ + +HFSC 
Sbjct: 350  DEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFSCQ 409

Query: 494  PPSDFAEILNQLRKFSTAKP*F*E 423
            PP DFAEIL+ LRK  T KP F E
Sbjct: 410  PPPDFAEILSDLRKIGTEKPTFKE 433


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  565 bits (1457), Expect = e-158
 Identities = 301/449 (67%), Positives = 339/449 (75%), Gaps = 30/449 (6%)
 Frame = -2

Query: 1694 VFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEETV 1515
            + FP NPK        S SR+ RILR  S ST   +      +++  R NY+GVRLEETV
Sbjct: 150  LLFPRNPK--------SCSRVFRILRDCSNSTDEPLV-----SVSSRRTNYAGVRLEETV 196

Query: 1514 A---VDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDK-------------- 1386
                 DS KLRLDSWISSR+ GISRARVQSSIRSGLVSVN RIVDK              
Sbjct: 197  VDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKAMLVSRKFEVGEGK 256

Query: 1385 -------------VSHNVKAGDRVNCTISELQPLRAEPENIPLDIVYEDDHVLVVNKPAH 1245
                         VSH ++AGD+VNCTISELQPLRAEPE+IPLDIVYED+HV        
Sbjct: 257  KIEEKDPITYSEQVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHV-------- 308

Query: 1244 MVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDGLSDSEDNCDDGLGYFSVDQSSSTCQA 1065
              VHPAPGNA+GTLVNGILHHCSLPTVA  N D  S+ +D  DD    F+  Q+  TC+ 
Sbjct: 309  --VHPAPGNASGTLVNGILHHCSLPTVALPNRD--SEEDDILDDEFNSFAAGQNCGTCET 364

Query: 1064 SVRPGIVHRLDKGTSGLLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDI 885
            ++RPGIVHRLDKGTSGLLVVAK+E SHAHLS+QFKLH+IHRVYISLTSGVP+PL+GRV+I
Sbjct: 365  NIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEI 424

Query: 884  PIGRDSNNRIRMTAIPGPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAH 705
            P+GRD NNRIRMTA+PGP  S Q RHAASRYKVIE+LA GGSALVEWRLETGRTHQIRAH
Sbjct: 425  PVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAH 484

Query: 704  AKHLGIPLLGDELYGGTKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPH 525
            AK+LGIPLLGDE+YGGTK+MALSLL PR PSS HGQL+QLVS  +RPCLHA+AL F HP 
Sbjct: 485  AKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPK 544

Query: 524  TGKNIHFSCPPPSDFAEILNQLRKFSTAK 438
            TGKN+HFSC PP DFAEIL+ LRK ST K
Sbjct: 545  TGKNVHFSCQPPEDFAEILSWLRKISTEK 573


>gb|KHG01344.1| hypothetical protein F383_22314 [Gossypium arboreum]
          Length = 446

 Score =  565 bits (1455), Expect = e-158
 Identities = 301/438 (68%), Positives = 341/438 (77%), Gaps = 1/438 (0%)
 Frame = -2

Query: 1748 CFPAPLTKAFVTSPSLFFVFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDE 1569
            C P P +KA   SPS F +    NPK     PF     ISRILRATS ST  +  +    
Sbjct: 7    CCPFPSSKALQISPS-FLLLSSRNPKFL---PFT----ISRILRATSISTSAAKHEEPT- 57

Query: 1568 ALAGHRNNYSGVRLEETVAVDSR-KLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIV 1392
                 R +Y+GV+LEETV    + KLRLDSWISSR+ GISRARVQSSI+SGLV VNGR+V
Sbjct: 58   -----RTSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVKVNGRVV 112

Query: 1391 DKVSHNVKAGDRVNCTISELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAT 1212
            DKVSH+++AGD+VNC IS+LQPL+AEPE+IPLDIV+EDDHVLVVNKP+HMVVHPAPGNA 
Sbjct: 113  DKVSHSLRAGDKVNCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAPGNAN 172

Query: 1211 GTLVNGILHHCSLPTVAFSNHDGLSDSEDNCDDGLGYFSVDQSSSTCQASVRPGIVHRLD 1032
            GTLVNGILHHCSLPTVA S  + L D+ED  DD    F     +S   ASVRPGIVHRLD
Sbjct: 173  GTLVNGILHHCSLPTVASSEKEVLFDTEDMSDDEQDIF---HGASAGAASVRPGIVHRLD 229

Query: 1031 KGTSGLLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIR 852
            KGTSGLLVVAK+E SHAHLS+QFK HTI RVYISLT GVPS  AGRVDIPIGRDSNNRIR
Sbjct: 230  KGTSGLLVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSASAGRVDIPIGRDSNNRIR 289

Query: 851  MTAIPGPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGD 672
            M A+PG     + RHAASRYKVIEVLAGGGSALV+WRLETGRTHQIRAHAK++GIPLLGD
Sbjct: 290  MVAVPGLSHHGRARHAASRYKVIEVLAGGGSALVQWRLETGRTHQIRAHAKYMGIPLLGD 349

Query: 671  ELYGGTKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPP 492
            E+YGGTK+MALSLL PRTP   + +LS+LVS  ERP LHA+ L F+HPH+G+ + FSCPP
Sbjct: 350  EVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALVLGFEHPHSGEKMRFSCPP 409

Query: 491  PSDFAEILNQLRKFSTAK 438
            P DF EILN LRK    K
Sbjct: 410  PPDFGEILNHLRKIGIEK 427


>ref|XP_010320444.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Solanum lycopersicum]
          Length = 430

 Score =  563 bits (1452), Expect = e-157
 Identities = 291/426 (68%), Positives = 336/426 (78%), Gaps = 6/426 (1%)
 Frame = -2

Query: 1697 FVFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEET 1518
            F   P NPK     P + +   S I RA +   G S SD + + + G R+NYSGV+LEET
Sbjct: 9    FSLLPQNPK-----PISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEET 63

Query: 1517 VAVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTIS 1338
            V   + KLRLDSW+SSR+ G+SRARVQSSIRSGLVSVNGR+ DKVSH VK GD+V+CTI+
Sbjct: 64   VDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIA 123

Query: 1337 ELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAF 1158
            +L+PLRAEPE+IPLDIVYED+HVLVVNKPAHMVVHPAPGNATGTLV+GILHHCSLPTV+F
Sbjct: 124  DLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSF 183

Query: 1157 SNHDGLSDSEDNCDDGLGYFS------VDQSSSTCQASVRPGIVHRLDKGTSGLLVVAKN 996
               + LSD ED  DD L  FS       D SS  C++SVRPGIVHRLDKGTSGLLVVAKN
Sbjct: 184  PGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKN 243

Query: 995  ELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQ 816
            E S A L++QFK HTI RVY+S+T GVP+ +AGRVDIPIGRDSNNRIRM AIPG  KS +
Sbjct: 244  EHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGK 303

Query: 815  GRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALS 636
             RHA SRYKVIE LAGGGSALVEWRLETGRTHQ      HLGIPL+GDE+YGGTK+MALS
Sbjct: 304  SRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQ------HLGIPLMGDEVYGGTKNMALS 357

Query: 635  LLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLR 456
            LL P+TP   HG+LSQLVS+ +RPCLHA+ L F+HP TG+NIHF+  PP DFAEIL++LR
Sbjct: 358  LLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELR 417

Query: 455  KFSTAK 438
               T K
Sbjct: 418  AIKTEK 423


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  563 bits (1450), Expect = e-157
 Identities = 289/399 (72%), Positives = 329/399 (82%)
 Frame = -2

Query: 1634 ISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEETVAVDSRKLRLDSWISSRVSGI 1455
            + +ILRA  +S+  S    N E +A    NY+GV+LEETV   + KLRLD+WISSR+ GI
Sbjct: 31   VFKILRARCSSS--SSGGNNREPIA----NYAGVQLEETVDTKAGKLRLDAWISSRIDGI 84

Query: 1454 SRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTISELQPLRAEPENIPLDIVYEDD 1275
            SRARVQSSIRSGLVS+NG++V KVSHNVK GD VNCTISELQPLRAE E+IPLDIVYEDD
Sbjct: 85   SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDD 144

Query: 1274 HVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDGLSDSEDNCDDGLGYFS 1095
            +VLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT+A SN +  SD+ED  DD      
Sbjct: 145  NVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDE----- 199

Query: 1094 VDQSSSTCQASVRPGIVHRLDKGTSGLLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGV 915
             + SSS   AS+RPGIVHRLDKGTSGLLVVAK+E SHAHLS+QFKLHTI RVYISLTSGV
Sbjct: 200  -EFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGV 258

Query: 914  PSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLE 735
            PS  +GR+++PI RD NNRIRM AIPG  K  Q RHAASRYKVIE+LAGGGSALVEWRLE
Sbjct: 259  PSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLE 318

Query: 734  TGRTHQIRAHAKHLGIPLLGDELYGGTKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLH 555
            TGRTHQIRAHAK++GIPLLGDE+YGGTK+MA SLL PRT    HG++ +LVS  +RPCLH
Sbjct: 319  TGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLH 378

Query: 554  AMALRFKHPHTGKNIHFSCPPPSDFAEILNQLRKFSTAK 438
            A+AL F HPHT + I FSCPPP+DFAEIL+QLR+  T K
Sbjct: 379  AVALGFTHPHTREKIQFSCPPPADFAEILSQLREIGTEK 417


>ref|XP_012078835.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha
            curcas] gi|802640486|ref|XP_012078836.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Jatropha curcas]
          Length = 426

 Score =  562 bits (1448), Expect = e-157
 Identities = 294/437 (67%), Positives = 336/437 (76%)
 Frame = -2

Query: 1748 CFPAPLTKAFVTSPSLFFVFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDE 1569
            C   P  KA  +S S+ F  F  NP++     F S+  + R+    S S+        ++
Sbjct: 10   CCIGPSAKALQSSSSISF--FHRNPRV-----FPSSKLLLRMFTVCSGSS--------EK 54

Query: 1568 ALAGHRNNYSGVRLEETVAVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVD 1389
                 R NY+G+RLEETV   S KLRLDSWISSR+SGISRARVQSSI+SGLV+VNGR+VD
Sbjct: 55   QNQNQRINYAGLRLEETVEAKSGKLRLDSWISSRISGISRARVQSSIKSGLVAVNGRVVD 114

Query: 1388 KVSHNVKAGDRVNCTISELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATG 1209
            KVSH+VK GD+V CTISELQPLRAE E+IPLDI+YEDDH+LVVNKP HMVVHPAPGN TG
Sbjct: 115  KVSHSVKVGDKVICTISELQPLRAEAEDIPLDIIYEDDHLLVVNKPPHMVVHPAPGNPTG 174

Query: 1208 TLVNGILHHCSLPTVAFSNHDGLSDSEDNCDDGLGYFSVDQSSSTCQASVRPGIVHRLDK 1029
            TLVNGILHHCSLPTV  S+ + LSD ED  DD          SS+C +SVRPGIVHRLDK
Sbjct: 175  TLVNGILHHCSLPTVVTSSQEVLSDVEDISDDE------GSCSSSCVSSVRPGIVHRLDK 228

Query: 1028 GTSGLLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRM 849
            GTSGLLVVAK+E +HAHLS+QFK HTI RVYISLTSGVPS L GR+DIPIGRD NNRIRM
Sbjct: 229  GTSGLLVVAKDEHAHAHLSEQFKQHTIQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRM 288

Query: 848  TAIPGPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDE 669
             AI GP+K    RHAASRYKVIE+LAGGGSALVEWRLETGRTHQIRAHAK++GIPLLGDE
Sbjct: 289  AAISGPVKQGHARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDE 348

Query: 668  LYGGTKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPP 489
            +YG T  MALSLL PR P+S   QLS L+S  ERPCLHA++L F HP TGK I+FSCPPP
Sbjct: 349  VYGSTTGMALSLLRPRIPASFQNQLSSLLSGLERPCLHALSLGFTHPRTGKEINFSCPPP 408

Query: 488  SDFAEILNQLRKFSTAK 438
             DFA +L+QLR+    K
Sbjct: 409  PDFAGVLSQLREMDMEK 425


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  560 bits (1444), Expect = e-156
 Identities = 293/398 (73%), Positives = 329/398 (82%)
 Frame = -2

Query: 1631 SRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEETVAVDSRKLRLDSWISSRVSGIS 1452
            SR+L   S+ST    S+ N     G R NYSGV+LEE+V   S K RLDSWISSR+SGIS
Sbjct: 53   SRLLTVHSSSTREPNSNQNP----GQRINYSGVKLEESVDSKSGKSRLDSWISSRISGIS 108

Query: 1451 RARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTISELQPLRAEPENIPLDIVYEDDH 1272
            RARVQSSI+SGLVSVNG+++DKVSHNVKAGD+VNC ISELQPLRAEPENIPLDIVYED++
Sbjct: 109  RARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDEN 168

Query: 1271 VLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDGLSDSEDNCDDGLGYFSV 1092
            VLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTV  S+ + LS +ED  DD       
Sbjct: 169  VLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTV--SSQEVLSGAEDVSDDD----DE 222

Query: 1091 DQSSSTCQASVRPGIVHRLDKGTSGLLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGVP 912
               SS+  ASVRPGIVHRLDKGTSGLLVVAK+E SHAHLS+QFKLHTI RVY+SLT GVP
Sbjct: 223  GLCSSSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVP 282

Query: 911  SPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLET 732
            +P+AGR+D+PIGRD +NRIRM AI  P +  Q RHAASRYKVIE+LAGGGSALVEWRLET
Sbjct: 283  APMAGRIDVPIGRDVSNRIRMAAIVEPNRG-QARHAASRYKVIEILAGGGSALVEWRLET 341

Query: 731  GRTHQIRAHAKHLGIPLLGDELYGGTKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLHA 552
            GRTHQIRAHAK++GIPLLGDE+YGGT++MALSLL  RT  SCH QLS  +S  ERPCLHA
Sbjct: 342  GRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHA 401

Query: 551  MALRFKHPHTGKNIHFSCPPPSDFAEILNQLRKFSTAK 438
            +AL F HP TGK IHFSCPPP DF EIL+QLR+  T K
Sbjct: 402  LALGFTHPCTGKEIHFSCPPPPDFTEILSQLREMGTEK 439


>ref|XP_011034961.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Populus
            euphratica]
          Length = 416

 Score =  559 bits (1441), Expect = e-156
 Identities = 294/403 (72%), Positives = 331/403 (82%)
 Frame = -2

Query: 1631 SRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEETVAVDSRKLRLDSWISSRVSGIS 1452
            SR+L   S+ST    S+ N     G R NYSGV+LEE+V   S K RLDSWISSR+SGIS
Sbjct: 24   SRLLTVHSSSTREPNSNQNP----GERINYSGVKLEESVDSKSGKSRLDSWISSRISGIS 79

Query: 1451 RARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTISELQPLRAEPENIPLDIVYEDDH 1272
            RARVQSSI+SGLVSVNG+++DKVSHNVKAGD+VNC ISELQPLRAEPENIPLDIVYED++
Sbjct: 80   RARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDEN 139

Query: 1271 VLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDGLSDSEDNCDDGLGYFSV 1092
            VLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTV  S+ + LS +ED  DD       
Sbjct: 140  VLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTV--SSQEVLSGAEDVSDDD---DDE 194

Query: 1091 DQSSSTCQASVRPGIVHRLDKGTSGLLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGVP 912
               SS+  ASVRPGIVHRLDKGTSGLLVVAK+E SHAHLS+QFKLHTI RVY+SLT GVP
Sbjct: 195  GLCSSSHAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVP 254

Query: 911  SPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLET 732
            +P+AGR+D+PIGRD +NRIRM AI  P +  Q RHAASRYKVIE+LA GGSALVEWRLET
Sbjct: 255  APMAGRIDVPIGRDVSNRIRMAAIAEPNRG-QARHAASRYKVIEILARGGSALVEWRLET 313

Query: 731  GRTHQIRAHAKHLGIPLLGDELYGGTKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLHA 552
            GRTHQIRAHAK++GIPLLGDE+YGGT++MALSLL  RT  SCH QLS  +S  ERPCLHA
Sbjct: 314  GRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHA 373

Query: 551  MALRFKHPHTGKNIHFSCPPPSDFAEILNQLRKFSTAKP*F*E 423
            +AL F HP TGK IHF+CPPP DF EIL+QLR+  T KP F E
Sbjct: 374  LALGFTHPCTGKEIHFACPPPPDFTEILSQLREMGTEKPSFKE 416


>ref|XP_010063294.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379712|ref|XP_010063295.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379717|ref|XP_010063296.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379720|ref|XP_010063297.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis]
          Length = 454

 Score =  549 bits (1415), Expect = e-153
 Identities = 284/418 (67%), Positives = 330/418 (78%), Gaps = 9/418 (2%)
 Frame = -2

Query: 1661 CPPFASTSRISRILRATST--STGVSISDGNDEALAGHRNNYSGVRLEETV-AVDSRKLR 1491
            CP   + S     LRA S    +G    +    A A   + Y+GVRL ETV A    KLR
Sbjct: 34   CPSIRARSSFLTALRARSAPAESGAGSLESRGPAPAP-ASGYAGVRLRETVDAAKPGKLR 92

Query: 1490 LDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTISELQPLRAEP 1311
            LD+WISSR+ G+SRARVQSSIRSGLVSVNGR+VDKVSHNV+AGD V+CTISELQPLRAEP
Sbjct: 93   LDAWISSRIQGVSRARVQSSIRSGLVSVNGRVVDKVSHNVRAGDMVDCTISELQPLRAEP 152

Query: 1310 ENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDGLSDS 1131
            E+IP+DIVYED+HVLVVNKPAHMVVHPAPGNA+GTLVN ILHHCSLPTVAFS  + LS+ 
Sbjct: 153  EDIPVDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNAILHHCSLPTVAFSETELLSEG 212

Query: 1130 EDNCDDGLGYFSVDQSS------STCQASVRPGIVHRLDKGTSGLLVVAKNELSHAHLSD 969
            ED  DD     +  ++S      S    SVRPGIVHRLDKGTSGLLVVAKNE SHAHLS+
Sbjct: 213  EDVSDDESSSSTACETSTKGFNSSESGGSVRPGIVHRLDKGTSGLLVVAKNERSHAHLSE 272

Query: 968  QFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQGRHAASRYK 789
            QFK+HTI RVY+SLT+GVPS  +GR+++PIGRD+NNRIRM+AIPGP   +Q R+AASRYK
Sbjct: 273  QFKMHTIRRVYVSLTNGVPSATSGRIEVPIGRDTNNRIRMSAIPGPSNGRQARYAASRYK 332

Query: 788  VIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALSLLWPRTPSS 609
            VIEVLAGG SALVEWRLETGRTHQIRAHAK++GIPLLGDE+YGGTK+M LSLL  + P  
Sbjct: 333  VIEVLAGGSSALVEWRLETGRTHQIRAHAKYVGIPLLGDEVYGGTKNMILSLLQAKLPIG 392

Query: 608  CHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLRKFSTAKP 435
               QLS+LVS+ ERPCLHA++L F HP+TG+N+ FSC PP DF+EIL QLR+    KP
Sbjct: 393  RQSQLSELVSKLERPCLHAVSLGFIHPYTGENVQFSCQPPEDFSEILCQLRRLGMKKP 450


>ref|XP_011649466.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Cucumis sativus]
          Length = 430

 Score =  548 bits (1412), Expect = e-153
 Identities = 284/425 (66%), Positives = 330/425 (77%)
 Frame = -2

Query: 1712 SPSLFFVFFPPNPKITACPPFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGV 1533
            SPS    FFPPN +       ++  RIS       +S     S+   E +A    NY+G 
Sbjct: 13   SPSPIHFFFPPNRRRIG----SNVLRISSNFSTRCSSDYDEYSEAQSERIA----NYAGT 64

Query: 1532 RLEETVAVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRV 1353
            RLEETV V+  K+RLDSWIS R++GISRARVQSSIR+GLVSVNGR++DKVSHNVKAGD +
Sbjct: 65   RLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVI 124

Query: 1352 NCTISELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 1173
            NCTISELQPLRAEPE+I LDIVYED+HVLVVNKPAHMVVHPAPGNATGTLVN IL+HCSL
Sbjct: 125  NCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSL 184

Query: 1172 PTVAFSNHDGLSDSEDNCDDGLGYFSVDQSSSTCQASVRPGIVHRLDKGTSGLLVVAKNE 993
            P VA S  +  SDS+ + D+   + S+   S   +A +RPGIVHRLDKGTSGLLVVAK+E
Sbjct: 185  PMVATSTGENESDSDVSDDE---FSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDE 241

Query: 992  LSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQG 813
             SHAHLS QFK H+I RVYISLT GVP   AGR+++PI RD NNRIRMTAI G   +   
Sbjct: 242  HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHA 301

Query: 812  RHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALSL 633
            ++AASRY V+E+LA GGS+LVEWRLETGRTHQIRAHAK++GIPLLGDE+YGGTKSMA+SL
Sbjct: 302  KYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 361

Query: 632  LWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLRK 453
            L  R  S+CHGQL QLVS  ERPCLHA+ L F HPHTGKNI FSCPPP+DF EIL+QLR+
Sbjct: 362  LRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLRE 421

Query: 452  FSTAK 438
              T K
Sbjct: 422  IGTQK 426