BLASTX nr result
ID: Ziziphus21_contig00004635
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ziziphus21_contig00004635
(1899 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus nota... 646 0.0
ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB ... 639 e-180
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB ... 627 e-176
ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB ... 617 e-173
ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB ... 617 e-173
ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB ... 613 e-172
ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB ... 610 e-171
gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sin... 609 e-171
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-... 608 e-171
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr... 605 e-170
ref|XP_008392513.1| PREDICTED: RNA polymerase sigma factor sigB ... 603 e-169
ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-... 602 e-169
gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arbor... 601 e-169
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac... 599 e-168
ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB ... 596 e-167
ref|XP_008460092.1| PREDICTED: RNA polymerase sigma factor sigB ... 595 e-167
ref|XP_008460093.1| PREDICTED: RNA polymerase sigma factor sigB ... 590 e-165
ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-... 590 e-165
ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB ... 589 e-165
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ... 587 e-164
>ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus notabilis]
gi|587881690|gb|EXB70625.1| RNA polymerase sigma factor
rpoD [Morus notabilis]
Length = 574
Score = 646 bits (1666), Expect = 0.0
Identities = 364/584 (62%), Positives = 397/584 (67%), Gaps = 11/584 (1%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFR----------THLPKPRDSISSWPHCILXXXXXXXXXXXX 1642
MSCLLPQF C+PDTFS F +HLPK RD I+S C+L
Sbjct: 1 MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARD-INSLAQCVLSTTSPSTSVGAT 59
Query: 1641 TVLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXX 1462
VL++EKLR PSLDANS+SVT+NRPWTY GA GPP +
Sbjct: 60 YVLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIAAA 119
Query: 1461 XXXXXXXXXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPV-RL 1285
L+ P TRAES SL S E +++KT Q R+
Sbjct: 120 AAEAVTLAKAAVKVAKDAALLVR--PSTRAESISLVSSE--------ARNIKTAQAASRV 169
Query: 1284 GDSMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXX 1105
DS+ + A ++D+ + A KE++DL+PT+ S IAV
Sbjct: 170 RDSLRAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDR 229
Query: 1104 XXXXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQ 925
RAS+QD+DHSDPLRYL EIELSEGIQ
Sbjct: 230 AAEKAAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQ 289
Query: 924 DXXXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVIS 745
D ERCG PTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSN+RLVIS
Sbjct: 290 DLLKLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVIS 349
Query: 744 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 565
IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 350 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 409
Query: 564 IRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQ 385
IRLPFHMVEATYRVKEARKQLYS+NGR P+DEEVAEATGLSMKRLAAVLLTPKAPRSLEQ
Sbjct: 410 IRLPFHMVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQ 469
Query: 384 KIGINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGR 205
KIGINQNLKPSE+IADPDAET EDVL R+FMKQDLDKVLDSLN REKQVIRWRFGM+DGR
Sbjct: 470 KIGINQNLKPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGR 529
Query: 204 MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Sbjct: 530 MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573
>ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB [Prunus mume]
Length = 643
Score = 639 bits (1649), Expect = e-180
Identities = 346/549 (63%), Positives = 386/549 (70%)
Frame = -1
Query: 1719 KPRDSISSWPHCILXXXXXXXXXXXXTVLNLEKLRLPSLDANSDSVTANRPWTYKGAIGP 1540
K RD + IL TVL++EKLRLPSL+ NSDS+ ANRPWTY GA GP
Sbjct: 95 KSRDPLCFRAQSILSTASRSTSTGTTTVLDVEKLRLPSLEVNSDSLAANRPWTYTGATGP 154
Query: 1539 PAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINNNPCTRAESTS 1360
P + L++ N +AES+S
Sbjct: 155 PIEANFGATLATENLLTSEEAVIAAAAAEAVTLAKAALKVAKDVALLVSTNHSAKAESSS 214
Query: 1359 LFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXX 1180
SP+ +ALH KW +HM+T QP RLG SMG +TA ++++ +Q AIKE++D+E T+
Sbjct: 215 PVSPKTNALHFKWAKHMETKQPSRLGASMGSETALVENHFIQLAIKESEDVESTNQEFEL 274
Query: 1179 XXXXXSNGIAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLR 1000
S GI RASLQD+DHSDPLR
Sbjct: 275 LQEQLSEGITARSSRQIERKARRAKAAEKAAASVVSVKSGSTSRKKRASLQDVDHSDPLR 334
Query: 999 YLXXXXXXXXXXXXXXEIELSEGIQDXXXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKT 820
YL EIELSEGIQ+ +RCG QPT AQWAAAAGVDQKT
Sbjct: 335 YLRATTHTSRLLTANEEIELSEGIQELLKLEKLQEELVQRCGGQPTIAQWAAAAGVDQKT 394
Query: 819 LRRRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 640
LR+RINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ+GCRGLVRGAEKFDASKG
Sbjct: 395 LRKRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQQGCRGLVRGAEKFDASKG 454
Query: 639 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEVA 460
FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EA+KQLYS NGRHP+DEEVA
Sbjct: 455 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVA 514
Query: 459 EATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQDL 280
EATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAET+ED+L++KFMKQDL
Sbjct: 515 EATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEDMLMKKFMKQDL 574
Query: 279 DKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT 100
+KVLDSLN REKQV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT
Sbjct: 575 EKVLDSLNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT 634
Query: 99 KHLQQYLVS 73
KHLQQY+VS
Sbjct: 635 KHLQQYVVS 643
>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB [Fragaria vesca subsp.
vesca]
Length = 616
Score = 627 bits (1617), Expect = e-176
Identities = 331/522 (63%), Positives = 375/522 (71%)
Frame = -1
Query: 1638 VLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXX 1459
+L++E+ LPSL NSDS+ NRPWTY GAIGPP +
Sbjct: 95 LLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTSEEAVIAAAA 154
Query: 1458 XXXXXXXXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLGD 1279
L++NN + E++S S A H+ W QH++T +R+GD
Sbjct: 155 AEAVTLAKAALKVAKDVALLVSNNHYAKVENSSPVSCGTSAFHINWAQHLETEPTLRIGD 214
Query: 1278 SMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXX 1099
SM +TA ++D+ +Q AI E++++EP + SNGIA
Sbjct: 215 SMASETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTERKARRTRAA 274
Query: 1098 XXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDX 919
RASLQD+DHSDPLRYL EIELSEGIQ+
Sbjct: 275 EKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQEL 334
Query: 918 XXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIA 739
+RCG+QPTFAQWAAAAGVDQKTLR+R+NYGI+CKDKMIKSNIRLVISIA
Sbjct: 335 LKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKSNIRLVISIA 394
Query: 738 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 559
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 395 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 454
Query: 558 LPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI 379
LPFHMVEATYRV+EA+KQLYS NGRHP+DEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI
Sbjct: 455 LPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI 514
Query: 378 GINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMK 199
GINQNLKPS+VIADPDAET+ED+L++KFMKQDL+KVLDSLNPREKQVIRWRFGMEDGRMK
Sbjct: 515 GINQNLKPSDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMK 574
Query: 198 TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQY++S
Sbjct: 575 TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLS 616
>ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
gi|802585247|ref|XP_012070323.1| PREDICTED: RNA
polymerase sigma factor sigB [Jatropha curcas]
gi|643732514|gb|KDP39610.1| hypothetical protein
JCGZ_02630 [Jatropha curcas]
Length = 577
Score = 617 bits (1591), Expect = e-173
Identities = 344/582 (59%), Positives = 389/582 (66%), Gaps = 9/582 (1%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRTHL---------PKPRDSISSWPHCILXXXXXXXXXXXXT 1639
MSCLLPQFKCQPDTFSIHFRTH K R+ + CIL
Sbjct: 1 MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTA--- 57
Query: 1638 VLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXX 1459
VL+LEKLRLPS +A+ DS+ AN PWTY G+IGPP K
Sbjct: 58 VLDLEKLRLPSFEAHPDSLVANSPWTYVGSIGPP-KETFGSTLATETLITGDDAVIAAAA 116
Query: 1458 XXXXXXXXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLGD 1279
L+ + P + AES L P + +WPQ +T + +GD
Sbjct: 117 AEAVALARAAAKVAKDAAILVKSFPSSEAES-KLEIPSIADVSSRWPQFTETDRARIIGD 175
Query: 1278 SMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXX 1099
S+ +T +++ MQ KE+D LEPTH S GIAV
Sbjct: 176 SVTAETGSREEHPMQHPTKESDHLEPTHEELELLQKQLSEGIAVRSRRQTERKERRTRAA 235
Query: 1098 XXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDX 919
R LQ++D+SDPLRYL E+ELSEGIQD
Sbjct: 236 EKAAANVMSWKSGSTSKKKRGPLQEVDYSDPLRYLRGTTSTSKLLTATEELELSEGIQDL 295
Query: 918 XXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIA 739
ERCG QPTF QWAAAAGVDQKTLR R+NYGI CKD+MIKSNIRLVISIA
Sbjct: 296 LKLERLHEELAERCGGQPTFQQWAAAAGVDQKTLRTRLNYGISCKDRMIKSNIRLVISIA 355
Query: 738 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 559
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 356 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 415
Query: 558 LPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI 379
LPFHMVEATYRVKEARKQLYS+NGR+PDDEEVAEATGLSMKRL+AVLLTPKAPRSL+QKI
Sbjct: 416 LPFHMVEATYRVKEARKQLYSENGRYPDDEEVAEATGLSMKRLSAVLLTPKAPRSLDQKI 475
Query: 378 GINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMK 199
GIN +LKPSE+IADPDAET+ED+L+++FMKQDL+KVLDSL+PRE QVIRWRFG+EDGR+K
Sbjct: 476 GINMDLKPSEIIADPDAETAEDLLMKQFMKQDLEKVLDSLSPRENQVIRWRFGLEDGRIK 535
Query: 198 TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
TLQEIGE+MGVSRERIRQIES AFRKLK KKRTK L+QYLV+
Sbjct: 536 TLQEIGEIMGVSRERIRQIESSAFRKLKKKKRTKQLKQYLVA 577
>ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Pyrus x
bretschneideri]
Length = 643
Score = 617 bits (1590), Expect = e-173
Identities = 337/551 (61%), Positives = 381/551 (69%), Gaps = 2/551 (0%)
Frame = -1
Query: 1719 KPRDSISSWPHCILXXXXXXXXXXXXTVLNLEKLRLPSLDANSDSVTANRPWTYKGAIGP 1540
K RD + IL TVL+LE+LRLPSL+ NSDS+ ++RPWTY GAIGP
Sbjct: 93 KTRDPLCFRAQYILSTTSHSTSTATTTVLDLERLRLPSLEVNSDSLASSRPWTYTGAIGP 152
Query: 1539 PAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINN--NPCTRAES 1366
+ L+++ N + ES
Sbjct: 153 LTEANFGATLATETLLTSEEAVIEAAAAEAVTLAKAALKVAKDVAMLVSSSTNHSAKPES 212
Query: 1365 TSLFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKTAQLDDYSMQCAIKEADDLEPTHXXX 1186
+S SPE ALH W QHM+T Q R+G SMG +TA ++D+ +Q AIKE +++E T+
Sbjct: 213 SSPVSPETKALHFNWAQHMETEQVSRVGASMGAETAFVEDHFIQSAIKELEEVEQTYEEF 272
Query: 1185 XXXXXXXSNGIAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASLQDIDHSDP 1006
S GI R+S+Q+IDHSDP
Sbjct: 273 ELLQEQLSKGITAKSSRQTERKARRAKAAEKAAASVVSVKSGSATRKKRSSVQEIDHSDP 332
Query: 1005 LRYLXXXXXXXXXXXXXXEIELSEGIQDXXXXXXXXXXXXERCGSQPTFAQWAAAAGVDQ 826
LRYL EIE SEGIQ+ +RCG QPT AQWAAAAGVDQ
Sbjct: 333 LRYLRSTTHTSRLLTANEEIEFSEGIQELLKLEKLHEELAQRCGGQPTIAQWAAAAGVDQ 392
Query: 825 KTLRRRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 646
KTLR+R+NYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS
Sbjct: 393 KTLRKRVNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 452
Query: 645 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEE 466
KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EA+KQLYS NGRHP+DEE
Sbjct: 453 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSLNGRHPNDEE 512
Query: 465 VAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQ 286
VAEATGLSMKRL+AVLLTPKAPRSLEQKIGINQNLKPSEVI+DPDAET+ED+L++KFMKQ
Sbjct: 513 VAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEDLLMKKFMKQ 572
Query: 285 DLDKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKK 106
DL+KVLDSLN REKQV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKK
Sbjct: 573 DLEKVLDSLNTREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKK 632
Query: 105 RTKHLQQYLVS 73
RTKHLQQY+VS
Sbjct: 633 RTKHLQQYVVS 643
>ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB [Vitis vinifera]
gi|296090195|emb|CBI40014.3| unnamed protein product
[Vitis vinifera]
Length = 575
Score = 613 bits (1581), Expect = e-172
Identities = 340/575 (59%), Positives = 389/575 (67%), Gaps = 2/575 (0%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRTH-LPKPRDSISSWPHCILXXXXXXXXXXXXTVLNLEKLR 1615
MSCLLPQFKC PDTFS H + H L K R++I C L VL++EKLR
Sbjct: 1 MSCLLPQFKCPPDTFSTHPKLHILSKNREAIYFRVQCALSTTSPPLSTSTTAVLDIEKLR 60
Query: 1614 LPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1435
LPSL+++S+SV A+RPWTY G +GPP +
Sbjct: 61 LPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVALAK 120
Query: 1434 XXXXXXXXXXXLINNNPCTRAEST-SLFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKTA 1258
L+ N ++E+ + F DD + Q +T + LGDS+G +T
Sbjct: 121 AAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSVGAETG 180
Query: 1257 QLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXXXXXXXXX 1078
+D S+Q +++DDLEPT S I V
Sbjct: 181 MVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKASAGV 240
Query: 1077 XXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDXXXXXXXX 898
R SLQ++D+SDPLRYL E+ELSEGIQD
Sbjct: 241 VSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQ 300
Query: 897 XXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIAKNYQGAG 718
ER G +PTFAQWAAAAGVDQKTLRRR NYGI CKDKMIKSNIRLVISIAKNYQGAG
Sbjct: 301 EDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAG 360
Query: 717 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 538
MN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE
Sbjct: 361 MNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 420
Query: 537 ATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLK 358
ATYRVKEARKQLYS+NGRHP++EEVAEATGLSMKRL AVLLTPKAPRSL+QKIGINQNLK
Sbjct: 421 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLK 480
Query: 357 PSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGE 178
PSEVIADPDAET+E++LI++FM++DL+KVL+SLNPREKQVIRWR+G+EDGR KTLQEIGE
Sbjct: 481 PSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGE 540
Query: 177 LMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
LMGVSRERIRQIESCAFRKLKNK+RTKHLQQYLVS
Sbjct: 541 LMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575
>ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
grandis] gi|629111779|gb|KCW76739.1| hypothetical protein
EUGRSUZ_D01094 [Eucalyptus grandis]
Length = 588
Score = 610 bits (1574), Expect = e-171
Identities = 335/574 (58%), Positives = 382/574 (66%), Gaps = 2/574 (0%)
Frame = -1
Query: 1788 SCLLPQFKCQPDTFSIHFRTHLPKPRDSISSWPHCILXXXXXXXXXXXXT--VLNLEKLR 1615
SCLLPQFKCQPDTFSI FRTH K R++ C+L T VL++EKLR
Sbjct: 15 SCLLPQFKCQPDTFSIQFRTHAQKNRETTYFRAQCLLSATSPSTLSSAATAVVLDMEKLR 74
Query: 1614 LPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1435
LPSL+ +DS T+NRPWTY GA+GPPA+
Sbjct: 75 LPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEAVIAAAASEAVTLAK 134
Query: 1434 XXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKTAQ 1255
+I N + ++ S K + ++ L + M P+
Sbjct: 135 AALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLELEHSNILTELMEPEGGL 194
Query: 1254 LDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXXXXXXXXXX 1075
+ MQ + +++DLEPTH IAV
Sbjct: 195 REGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKEIRERAAEKAAANVV 254
Query: 1074 XXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDXXXXXXXXX 895
RA+LQ++D+SDPLRYL E ELSEGIQD
Sbjct: 255 SVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELSEGIQDLLKLERLQV 314
Query: 894 XXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIAKNYQGAGM 715
ERCG +P FAQWAAAAGVDQKTLR+R+NYG LCKDKMIKSNIRLVISIAKNYQGAGM
Sbjct: 315 ELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIRLVISIAKNYQGAGM 374
Query: 714 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 535
NLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA
Sbjct: 375 NLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 434
Query: 534 TYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKP 355
TYRVKEARKQLYS+NGR PD+EEVAEATGLSMKRL AVL+TPKAPRSL+QKIGINQNLKP
Sbjct: 435 TYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPRSLDQKIGINQNLKP 494
Query: 354 SEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEL 175
SEVIADP+AETSEDVL+++FM+QDL+KVLD+LNPREKQV+RWRFG+EDGRMKTLQEIGEL
Sbjct: 495 SEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGEL 554
Query: 174 MGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
MGVSRERIRQIESCAFRKLKNKKRTKHLQQY+++
Sbjct: 555 MGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 588
>gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
Length = 605
Score = 609 bits (1571), Expect = e-171
Identities = 336/582 (57%), Positives = 387/582 (66%), Gaps = 9/582 (1%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRT---------HLPKPRDSISSWPHCILXXXXXXXXXXXXT 1639
MSCLLPQFKCQPDTFSIHFRT H K ++ I HC+L T
Sbjct: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
Query: 1638 VLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXX 1459
VL++EKLRLPSL+A+S++V ANR WTY GA+GP +
Sbjct: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 143
Query: 1458 XXXXXXXXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLGD 1279
+N++ + +S S D W Q + + +GD
Sbjct: 144 EAVALARAAVKVAKDAALM-VNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 202
Query: 1278 SMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXX 1099
S+ + A ++YS Q + ++ DLEPTH S IAV
Sbjct: 203 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 262
Query: 1098 XXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDX 919
R S+Q++D+SDPLRYL E++LS GIQD
Sbjct: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
Query: 918 XXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIA 739
ERCG PTFAQWAAAAGVDQ+ LRRR+NYGILCKDKMI SNIRLVISIA
Sbjct: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
Query: 738 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 559
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
Query: 558 LPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI 379
LPFHMVEATYRVKEARKQLYS+NGRHP++EEVAEATGLSMKRL AVLL+PKAPRSL+QKI
Sbjct: 443 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 502
Query: 378 GINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMK 199
GINQNLKPSEVIADP+AET+ED+LI+KFMK+DL+KVLD+LNPRE+QV+RWRFG+EDGRMK
Sbjct: 503 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 562
Query: 198 TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
TLQEIGELMGVSRERIRQIES AFRKLKNKKRTKHL QY ++
Sbjct: 563 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
sinensis]
Length = 605
Score = 608 bits (1569), Expect = e-171
Identities = 336/582 (57%), Positives = 386/582 (66%), Gaps = 9/582 (1%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRT---------HLPKPRDSISSWPHCILXXXXXXXXXXXXT 1639
MSCLLPQFKCQPDTFSIHFRT H K ++ I HC+L T
Sbjct: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
Query: 1638 VLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXX 1459
VL++EKLRLPSL+A+S++V ANR WTY GA+GP +
Sbjct: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 143
Query: 1458 XXXXXXXXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLGD 1279
+N++ + +S S D W Q + + +GD
Sbjct: 144 EAVALARAAVKVAKDAALM-VNHHNSAKPKSKPAISLSADTNTSMWAQLTERERASIIGD 202
Query: 1278 SMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXX 1099
S+ + A ++YS Q + ++ DLEPTH S IAV
Sbjct: 203 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 262
Query: 1098 XXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDX 919
R S+Q++D+SDPLRYL E++LS GIQD
Sbjct: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
Query: 918 XXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIA 739
ERCG PTFAQWAAAAGVDQ+ LRRR+NYGILCKDKMI SNIRLVISIA
Sbjct: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
Query: 738 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 559
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
Query: 558 LPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI 379
LPFHMVEATYRVKEARKQLYS+NGRHP++EEVAEATGLSMKRL AVLLTPKAPRSL+QK
Sbjct: 443 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQKF 502
Query: 378 GINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMK 199
GINQNLKPSEVIADP+AET+ED+LI+KFMK+DL+KVLD+LNPRE+QV+RWRFG+EDGRMK
Sbjct: 503 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 562
Query: 198 TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
TLQEIGELMGVSRERIRQIES AFRKLKNKKRTKHL QY ++
Sbjct: 563 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
gi|557539534|gb|ESR50578.1| hypothetical protein
CICLE_v10030998mg [Citrus clementina]
Length = 605
Score = 605 bits (1561), Expect = e-170
Identities = 334/582 (57%), Positives = 385/582 (66%), Gaps = 9/582 (1%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRT---------HLPKPRDSISSWPHCILXXXXXXXXXXXXT 1639
MSCLLPQFKCQPDTFSIHFRT H K ++ I HC+L T
Sbjct: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
Query: 1638 VLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXX 1459
VL++EKLRLPSL+A+S++V ANR WTY GA+GP +
Sbjct: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 143
Query: 1458 XXXXXXXXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLGD 1279
+N++ + +S S D W Q + + +GD
Sbjct: 144 EAVALARAAVKVAKDAALM-VNHHNSAKPKSKPAISLSADTSTSMWAQLTERERASIIGD 202
Query: 1278 SMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXX 1099
S+ + A ++YS Q + ++ DLEPTH S IAV
Sbjct: 203 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 262
Query: 1098 XXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDX 919
R S+Q++D+SDPLRYL E++LS GIQD
Sbjct: 263 EKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
Query: 918 XXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIA 739
ERCG PTFAQWAAAAGVDQ+ LRRR+NYGILCKDKMI SNIRLVISIA
Sbjct: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
Query: 738 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 559
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
Query: 558 LPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI 379
LPFHMVEATYRVKEARKQLYS+NGRHP++EEVA+ATGLSMKRL AVLL PKAPRSL+QK
Sbjct: 443 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKAPRSLDQKF 502
Query: 378 GINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMK 199
GINQNLKPSEVIADP+AET+ED+LI+KFMK+DL+KVLD+LNPRE+QV+RWRFG+EDGRMK
Sbjct: 503 GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 562
Query: 198 TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
TLQEIGELMGVSRERIRQIES AFRKLKNKKRTKHL QY ++
Sbjct: 563 TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>ref|XP_008392513.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Malus
domestica]
Length = 638
Score = 603 bits (1555), Expect = e-169
Identities = 331/549 (60%), Positives = 377/549 (68%)
Frame = -1
Query: 1719 KPRDSISSWPHCILXXXXXXXXXXXXTVLNLEKLRLPSLDANSDSVTANRPWTYKGAIGP 1540
K RD + IL TVL++EKLRLPSL+ NSDS+ ++RPWTY GAI P
Sbjct: 91 KTRDPLCFRAQYILSTTPRSTSTATTTVLDMEKLRLPSLEFNSDSLASSRPWTYTGAIDP 150
Query: 1539 PAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINNNPCTRAESTS 1360
P + L++ + E +S
Sbjct: 151 PTEANFGSTLATETLLTSEEAVIAAAAAEAVTLAKAALKVAKDVAMLVSTIHSAKPEISS 210
Query: 1359 LFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXX 1180
SPE +ALH W QH++T Q VR+G SMG +TA L+D+ +Q A KE++++E T+
Sbjct: 211 PVSPETNALHFNWAQHIETEQ-VRVGASMGAETAFLEDHFIQYAEKESEEVERTNEEFEL 269
Query: 1179 XXXXXSNGIAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLR 1000
S GI R+S+Q+IDHSDPLR
Sbjct: 270 LQEQLSKGITAKSSRQTERKARRSKAAEKAAASVVSVKSGSTTRKKRSSVQEIDHSDPLR 329
Query: 999 YLXXXXXXXXXXXXXXEIELSEGIQDXXXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKT 820
YL EIELS GIQ+ +RCG QPT AQWAAAAGVDQKT
Sbjct: 330 YLRSTTHTSRLLTANEEIELSAGIQELLKLEKLQEELTQRCGRQPTIAQWAAAAGVDQKT 389
Query: 819 LRRRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 640
LR+R+N GILCKDKMIKSNIRLVISIAKNYQG+GMNLQDLVQ+GCRGLVRGAEKFDASKG
Sbjct: 390 LRKRVNCGILCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQQGCRGLVRGAEKFDASKG 449
Query: 639 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEVA 460
FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLYS NGRHP+DEEVA
Sbjct: 450 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYSLNGRHPNDEEVA 509
Query: 459 EATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQDL 280
EATGLSMKRL+AVLLTPKAPRSL+QKIGIN N KPSEVI+DPDAET+ED+L++KFMKQDL
Sbjct: 510 EATGLSMKRLSAVLLTPKAPRSLDQKIGINLNFKPSEVISDPDAETAEDLLMKKFMKQDL 569
Query: 279 DKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT 100
+KVLDSLNPREKQV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT
Sbjct: 570 EKVLDSLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT 629
Query: 99 KHLQQYLVS 73
KHLQQY VS
Sbjct: 630 KHLQQYAVS 638
>ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
nucifera]
Length = 584
Score = 602 bits (1552), Expect = e-169
Identities = 333/586 (56%), Positives = 393/586 (67%), Gaps = 14/586 (2%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRTHL-------------PKPRDSISSWPHCILXXXXXXXXX 1651
M+CLLPQFKC PDT SIHFRTH K RD +S C+L
Sbjct: 1 MACLLPQFKCSPDTISIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVLSTTTTAMTT 60
Query: 1650 XXXTVLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXX 1471
++++EKLR+PSL+++S SV ++RP +Y GA GPP K
Sbjct: 61 T---LVDVEKLRMPSLESHSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALI 117
Query: 1470 XXXXXXXXXXXXXXXXXXXXXXXLINNNPCTRAES-TSLFSPEDDALHLKWPQHMKTGQP 1294
++N+ + +E+ S FS E L+ Q +T +
Sbjct: 118 AAAAAEAVALAKEAVEVAKDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTETQEV 177
Query: 1293 VRLGDSMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXX 1114
R+ S+G ++ Q ++ S+Q + K++D L+ + IAV
Sbjct: 178 GRIDHSVGLESRQEEEQSVQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQAR 237
Query: 1113 XXXXXXXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSE 934
RA+LQDID+SDPLRYL E+ELSE
Sbjct: 238 RARAMEKASTNVLSVKSGHSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSE 297
Query: 933 GIQDXXXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRL 754
GIQD ERCG QPTFAQWAAAAGVDQKTLR+R+NYGILCKDKMIKSNIRL
Sbjct: 298 GIQDLLKLEKLHEELAERCGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRL 357
Query: 753 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 574
VISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 358 VISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 417
Query: 573 SRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRS 394
SRTIRLPFHMVEATYRV+EA+KQLYS+NGRHPD+EEVAEATGLSMKRL AVLLTPKAP S
Sbjct: 418 SRTIRLPFHMVEATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPIS 477
Query: 393 LEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGME 214
L+QKIG+NQ++KPSE+IADPDAET+E++LI++FMKQDL+KVLDSLNPREKQVIRWRFGME
Sbjct: 478 LDQKIGMNQDMKPSEIIADPDAETAEELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 537
Query: 213 DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLV 76
DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNK+RTK+LQQY++
Sbjct: 538 DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKNLQQYVI 583
>gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
Length = 578
Score = 601 bits (1549), Expect = e-169
Identities = 332/576 (57%), Positives = 382/576 (66%), Gaps = 3/576 (0%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFR---THLPKPRDSISSWPHCILXXXXXXXXXXXXTVLNLEK 1621
MSCLLPQFKCQPDTFSI FR +H K ++SI C+L VL++EK
Sbjct: 1 MSCLLPQFKCQPDTFSIQFRAHHSHHSKHKESICFRSQCVLSTTSSTSTATTA-VLDVEK 59
Query: 1620 LRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1441
LRLPS +A+S+SV +RPWTY GA GPP++
Sbjct: 60 LRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVAL 119
Query: 1440 XXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKT 1261
++ N+ + E S S D L KW + + +GD + +
Sbjct: 120 ARAAAKVAKDAAIMVKNHSSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDEL 179
Query: 1260 AQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXXXXXXXX 1081
+D Q + KE+D+LEPT+ S IAV
Sbjct: 180 EMEEDDFEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSNRQPERKAKRTRAAEKAATN 239
Query: 1080 XXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDXXXXXXX 901
R +LQDID+SDPLRYL E+ELSEGIQD
Sbjct: 240 VVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLKLEVL 299
Query: 900 XXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIAKNYQGA 721
ERCG PTFAQWAAAA VD+KTLR R+NYG +CKDKMIKSNIRLVISIAKNYQGA
Sbjct: 300 HEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICKDKMIKSNIRLVISIAKNYQGA 359
Query: 720 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 541
GMNLQDLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV
Sbjct: 360 GMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 419
Query: 540 EATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNL 361
EATYRVKEARKQLYS+NGR PD+ EVAEATGLSMKRL AVLL PKAPRSL+QKIGINQNL
Sbjct: 420 EATYRVKEARKQLYSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQNL 479
Query: 360 KPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIG 181
KPSEVIADP+A+++ED+L+++FMK+DL+KVLDSL+PRE+QVIRWRFGMEDGRMKTLQEIG
Sbjct: 480 KPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGRMKTLQEIG 539
Query: 180 ELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
E MGVSRERIRQIE CAFRKLKNK+RTKHLQQYL+S
Sbjct: 540 ESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575
>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
[Theobroma cacao]
Length = 623
Score = 599 bits (1544), Expect = e-168
Identities = 342/620 (55%), Positives = 386/620 (62%), Gaps = 47/620 (7%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRTH-------------------------------------- 1726
MSCLLPQFKCQPDTFSI FRTH
Sbjct: 1 MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60
Query: 1725 -LPKPRDSISSWPHCILXXXXXXXXXXXXTVLNLEKLRLPSLDANSDSVTANRPWTYKGA 1549
L K ++ I C+L VL++EKLRLPS +A+ +SV +RPWTY GA
Sbjct: 61 VLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGA 120
Query: 1548 IGPPAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINNNPCTRAE 1369
GPP++ + N + E
Sbjct: 121 TGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTE 180
Query: 1368 STSLFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKTAQLDDYSMQCAIKEADDLEPTHXX 1189
S S D+ KW + + +GDS ++ +D S Q + E+D+LEPT+
Sbjct: 181 MKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEE 240
Query: 1188 XXXXXXXXSNGIAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASLQDIDHSD 1009
S IAV R +LQD+D+SD
Sbjct: 241 LEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYSD 300
Query: 1008 PLRYLXXXXXXXXXXXXXXEIELSEGIQDXXXXXXXXXXXXERCGSQPTFAQWAAAAGVD 829
PLRYL E+ELSEGIQD ERCG QPTFAQWAAAAGVD
Sbjct: 301 PLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVD 360
Query: 828 QKTLRRRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 649
QKTLR R+NYG+ CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA
Sbjct: 361 QKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 420
Query: 648 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDE 469
SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS+NGRHPD+E
Sbjct: 421 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNE 480
Query: 468 EVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPS--------EVIADPDAETSED 313
EVAEATGLSMKRL AVLLTPKAPRSL+QKIGINQNLKPS EVIADP+AET+ED
Sbjct: 481 EVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAED 540
Query: 312 VLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESC 133
+LI++FM++DL+KVLDSL+ RE+QVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESC
Sbjct: 541 MLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESC 600
Query: 132 AFRKLKNKKRTKHLQQYLVS 73
AFRKLKNKKRTKHLQQYL+S
Sbjct: 601 AFRKLKNKKRTKHLQQYLLS 620
>ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
gi|763778947|gb|KJB46070.1| hypothetical protein
B456_007G347300 [Gossypium raimondii]
Length = 578
Score = 596 bits (1537), Expect = e-167
Identities = 329/576 (57%), Positives = 382/576 (66%), Gaps = 3/576 (0%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFR---THLPKPRDSISSWPHCILXXXXXXXXXXXXTVLNLEK 1621
MSCLLPQFKCQPDTFSI FR +H K ++SI C+L VL++EK
Sbjct: 1 MSCLLPQFKCQPDTFSIQFRAHHSHHSKHKESICFRSQCVLSTTSSTSMATTA-VLDVEK 59
Query: 1620 LRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1441
LRLPS +A+S+SV +RPWTY GA GPP++
Sbjct: 60 LRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVAL 119
Query: 1440 XXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKT 1261
++ N+ + E S S D L KW + + +GD + +
Sbjct: 120 ARAAAKVAKDAAIMVKNHGSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDEL 179
Query: 1260 AQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXXXXXXXX 1081
+D+ Q + KE+D+LEPT+ S IAV
Sbjct: 180 ELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRAAEKAATN 239
Query: 1080 XXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDXXXXXXX 901
R +LQDID+SDPLRYL E+ELSEGIQD
Sbjct: 240 VVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLKLEGL 299
Query: 900 XXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIAKNYQGA 721
ERCG PTFAQWAAAA VD+KTLR R+NYG +C DKMIKSNIRLVISIAKNYQGA
Sbjct: 300 HEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISIAKNYQGA 359
Query: 720 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 541
GMNLQDLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV
Sbjct: 360 GMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 419
Query: 540 EATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNL 361
EATYRVKEARKQL+S+NGR PD+ EVAEATGLSMKRL AVLL PKAPRSL+QKIGINQNL
Sbjct: 420 EATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQNL 479
Query: 360 KPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIG 181
KPSEVIADP+A+++ED+L+++FMK+DL+KVLDSL+PRE+QVIRWRFGMEDGR+KTLQEIG
Sbjct: 480 KPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGRVKTLQEIG 539
Query: 180 ELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
E MGVSRERIRQIE CAFRKLKNK+RTKHLQQYL+S
Sbjct: 540 ESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575
>ref|XP_008460092.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo]
Length = 580
Score = 595 bits (1535), Expect = e-167
Identities = 334/589 (56%), Positives = 385/589 (65%), Gaps = 16/589 (2%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRT----------------HLPKPRDSISSWPHCILXXXXXX 1660
MSCLLPQFKC P+TFSI F+T K RD S CIL
Sbjct: 1 MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60
Query: 1659 XXXXXXTVLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXX 1480
T LN+++L+LP D N+DSV+ R +Y GA+
Sbjct: 61 TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAV---------ESSLASTLLTSEE 111
Query: 1479 XXXXXXXXXXXXXXXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTG 1300
L NN +RA + S SP+ DALH KW Q M++
Sbjct: 112 ATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESE 171
Query: 1299 QPVRLGDSMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXX 1120
+ +G+ +G ++ +++ + E+DD+EPT S I V
Sbjct: 172 RADIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERK 231
Query: 1119 XXXXXXXXXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIEL 940
R+SLQ++D+SDPLRYL E+EL
Sbjct: 232 ARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELEL 291
Query: 939 SEGIQDXXXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNI 760
SEGIQD ER G++PTFAQWAAAAGV+Q+TLR+R+NYG LCKDKMIKSNI
Sbjct: 292 SEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 351
Query: 759 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 580
RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 352 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 411
Query: 579 DQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAP 400
DQSRTIRLPFHMVEATYRVKEARKQL S+NGRHPDD+E+AEA GLSMKRLAAVL+TPKAP
Sbjct: 412 DQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 471
Query: 399 RSLEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFG 220
RSLEQKIGINQNLKPSEVI+DP+AET+ED+LI++FMKQDL+KVLDSLNPREKQVIRWRFG
Sbjct: 472 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 531
Query: 219 MEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
MEDGRMKTLQEIGE+MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Sbjct: 532 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 580
>ref|XP_008460093.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo]
Length = 563
Score = 590 bits (1521), Expect = e-165
Identities = 329/573 (57%), Positives = 380/573 (66%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRTHLPKPRDSISSWPHCILXXXXXXXXXXXXTVLNLEKLRL 1612
MSCLLPQFKC P+TFSI F+T S P T LN+++L+L
Sbjct: 1 MSCLLPQFKCHPETFSIQFKTAANNSHHH-SFIPTAYSSYTSPPTSTGTATTLNVDRLKL 59
Query: 1611 PSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1432
P D N+DSV+ R +Y GA+
Sbjct: 60 PPFDTNTDSVSVERLRSYLGAV---------ESSLASTLLTSEEATIAAAAAEAVTLAKA 110
Query: 1431 XXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKTAQL 1252
L NN +RA + S SP+ DALH KW Q M++ + +G+ +G +
Sbjct: 111 AVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPI 170
Query: 1251 DDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXXXXXXXXXXX 1072
+ +++ + E+DD+EPT S I V
Sbjct: 171 EGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVP 230
Query: 1071 XXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDXXXXXXXXXX 892
R+SLQ++D+SDPLRYL E+ELSEGIQD
Sbjct: 231 FKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEE 290
Query: 891 XXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIAKNYQGAGMN 712
ER G++PTFAQWAAAAGV+Q+TLR+R+NYG LCKDKMIKSNIRLVISIAKNYQGAGMN
Sbjct: 291 LAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMN 350
Query: 711 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 532
LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEAT
Sbjct: 351 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEAT 410
Query: 531 YRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPS 352
YRVKEARKQL S+NGRHPDD+E+AEA GLSMKRLAAVL+TPKAPRSLEQKIGINQNLKPS
Sbjct: 411 YRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPS 470
Query: 351 EVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELM 172
EVI+DP+AET+ED+LI++FMKQDL+KVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGE+M
Sbjct: 471 EVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIM 530
Query: 171 GVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
GVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Sbjct: 531 GVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 563
>ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nelumbo nucifera]
Length = 572
Score = 590 bits (1520), Expect = e-165
Identities = 338/594 (56%), Positives = 385/594 (64%), Gaps = 21/594 (3%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRTHLP----------KPRDSISSWPHCILXXXXXXXXXXXX 1642
M+CLLPQFKC PDT SIHF+TH K RD + CIL
Sbjct: 1 MACLLPQFKCSPDTLSIHFKTHQHQHHYSNNSQLKARDLLCFRTQCILSTTTATMTTT-- 58
Query: 1641 TVLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXX 1462
V++ EKLR+PSL+A+ SV A+RP TY GAI PP K
Sbjct: 59 -VVDDEKLRMPSLEAHLISVPADRPLTYIGAIDPPTKAKFEATLATEPLITGDEALIAAA 117
Query: 1461 XXXXXXXXXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLG 1282
+++ NP ++++ KWP + P L
Sbjct: 118 AVEAVALAKAAVEIAKDAALMVSTNPSSKSD--------------KWPPDI----PSEL- 158
Query: 1281 DSMGPKTAQLDDYSMQCAI-----------KEADDLEPTHXXXXXXXXXXSNGIAVXXXX 1135
D+ +TAQL++ + +++D L+PT S IAV
Sbjct: 159 DTYWHETAQLNEIEQVDMVHHSLGAESRPKEDSDYLDPTDEELKLLQMQLSKSIAVRSGR 218
Query: 1134 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXX 955
R++LQD+D+SDPLRYL
Sbjct: 219 QTERRARRARAAEKVAANVVAVKSGSSSRKKRSALQDVDYSDPLRYLRGTTSTSRLLTAT 278
Query: 954 XEIELSEGIQDXXXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKM 775
E+E SEGIQD ER G QPTFAQWAAAAG+DQKTLR+R+NYGILCKDKM
Sbjct: 279 EELEFSEGIQDLLKLEKLYEELAERYGGQPTFAQWAAAAGIDQKTLRKRLNYGILCKDKM 338
Query: 774 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 595
IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV
Sbjct: 339 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 398
Query: 594 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLL 415
RKSLSDQSRTIRLPFHMVEATYRV+EARKQLYS+NGRHPD+EEVAEATGLSMKRL AVLL
Sbjct: 399 RKSLSDQSRTIRLPFHMVEATYRVREARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLL 458
Query: 414 TPKAPRSLEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVI 235
TPKAPRSL+QKIGINQNLKPSEVIADPDAET+E++L++KFMKQDL+KVLDSLNPREKQVI
Sbjct: 459 TPKAPRSLDQKIGINQNLKPSEVIADPDAETTEELLMKKFMKQDLEKVLDSLNPREKQVI 518
Query: 234 RWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK+LQQYL+S
Sbjct: 519 RWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKNLQQYLIS 572
>ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis
sativus] gi|700191056|gb|KGN46260.1| RNA polymerase sigma
factor rpoD1 [Cucumis sativus]
Length = 580
Score = 589 bits (1519), Expect = e-165
Identities = 332/589 (56%), Positives = 384/589 (65%), Gaps = 16/589 (2%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFRT---------HLP-------KPRDSISSWPHCILXXXXXX 1660
MSCLLPQFKC P+TFSI F+T LP K RD S CIL
Sbjct: 1 MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
Query: 1659 XXXXXXTVLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXX 1480
T L++++L+LP D N+DSV+ R +Y GA+
Sbjct: 61 TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAV---------ESSLASTLLTSEE 111
Query: 1479 XXXXXXXXXXXXXXXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTG 1300
L NN +RA + S SP+ DALH KW Q M++
Sbjct: 112 ASIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESE 171
Query: 1299 QPVRLGDSMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXX 1120
+ +G+ +G ++ +++ + E+DD+EPT S I V
Sbjct: 172 RADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERK 231
Query: 1119 XXXXXXXXXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIEL 940
R S+Q++D+SDPLRYL E+EL
Sbjct: 232 ARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELEL 291
Query: 939 SEGIQDXXXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNI 760
SEGIQD ER G++PTFAQWAAAAGV+Q+TLR+R+NYG LCKDKMIKSNI
Sbjct: 292 SEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 351
Query: 759 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 580
RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 352 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 411
Query: 579 DQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAP 400
DQSRTIRLPFHMVEATYRVKEARKQL +NGRHPDD+E+AEA GLSMKRLAAVL+TPKAP
Sbjct: 412 DQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 471
Query: 399 RSLEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFG 220
RSLEQKIGINQNLKPSEVI+DP+AET ED+LI++FMKQDL+KVLDSLNPREKQVIRWRFG
Sbjct: 472 RSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 531
Query: 219 MEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
MEDGRMKTLQEIGE+MGVSRERIRQIESCAFRKLKNKKRTKHLQQY++S
Sbjct: 532 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580
>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
rpoD1, putative [Ricinus communis]
Length = 569
Score = 587 bits (1514), Expect = e-164
Identities = 334/582 (57%), Positives = 378/582 (64%), Gaps = 9/582 (1%)
Frame = -1
Query: 1791 MSCLLPQFKCQPDTFSIHFR---------THLPKPRDSISSWPHCILXXXXXXXXXXXXT 1639
MSCLLPQFKCQPDTFSIHFR T K R+ I CIL
Sbjct: 2 MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTA--- 58
Query: 1638 VLNLEKLRLPSLDANSDSVTANRPWTYKGAIGPPAKXXXXXXXXXXXXXXXXXXXXXXXX 1459
VL+LEKLRLPS +A SDS+ N PWTY
Sbjct: 59 VLDLEKLRLPSFEAPSDSIAPNSPWTYA---------TFGSTLATETLITSDEAVIAAAA 109
Query: 1458 XXXXXXXXXXXXXXXXXXXLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTGQPVRLGD 1279
L+ N P ES DA +WPQ +T + +GD
Sbjct: 110 AEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTIDAS--RWPQFTETERARIIGD 167
Query: 1278 SMGPKTAQLDDYSMQCAIKEADDLEPTHXXXXXXXXXXSNGIAVXXXXXXXXXXXXXXXX 1099
S+ +T ++ SMQ +IKE+D LE TH S GIAV
Sbjct: 168 SVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAV 227
Query: 1098 XXXXXXXXXXXXXXXXXXXRASLQDIDHSDPLRYLXXXXXXXXXXXXXXEIELSEGIQDX 919
R SLQ++D+SDPLRYL E+ELS IQD
Sbjct: 228 EKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDL 287
Query: 918 XXXXXXXXXXXERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIA 739
ER G QPTFAQWAAAAGVDQ+TLR+RIN+G +CKDKMIKSNIRLVISIA
Sbjct: 288 LKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIA 347
Query: 738 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 559
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 348 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 407
Query: 558 LPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI 379
LPFHMVEATYRVKEARKQLYS+NGRHPDDEEVAEA GLSMKRL+AVLLTPKAPRSL+QKI
Sbjct: 408 LPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKI 467
Query: 378 GINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMK 199
G+N +LKPSEVIADP+AET+E++L+++FMKQDL+KVL++LNPRE QV+RWRFG+EDGRMK
Sbjct: 468 GMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMK 527
Query: 198 TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 73
TLQEIGE+MGVSRERIRQIES AFRKLKNKKRTK L+QYL++
Sbjct: 528 TLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569