BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00002485
         (2275 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,...   625   e-176
ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF,...   625   e-176
ref|XP_010107506.1| RNA polymerase sigma factor rpoD [Morus nota...   624   e-176
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   623   e-175
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   615   e-173
ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   613   e-172
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   593   e-166
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   593   e-166
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,...   585   e-164
gb|KDO48072.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   583   e-163
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   583   e-163
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   581   e-163
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   581   e-162
gb|KDO48082.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   580   e-162
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              580   e-162
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   580   e-162
ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF,...   578   e-162
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   577   e-161
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   575   e-161
gb|KDO48075.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   575   e-161

>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Pyrus x bretschneideri]
          Length = 573

 Score =  625 bits (1612), Expect = e-176
 Identities = 336/528 (63%), Positives = 391/528 (74%), Gaps = 6/528 (1%)
 Frame = -1

Query: 1948 VLMFNEQIASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVD 1778
            VLM +EQ  + V SVP   +AR F TSV+ QEQ DEFK LL     EK +QA LDR Q++
Sbjct: 37   VLMLHEQATAAVPSVPITFVARHFPTSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIE 96

Query: 1777 TGNLVHEDKHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKH 1598
            T   ++ED       QL+ D E QLL+ +G   +  SLQT V  S  LTV+P    + KH
Sbjct: 97   TKASLNEDLDIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTGVKLSAPLTVEPITTASSKH 156

Query: 1597 MDVELCDXXXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRL 1418
            MD++  D                      K +  D DDS S+G+ N+L + EKTVRSTRL
Sbjct: 157  MDIKPSDAVALAKKALSASKEAVSFADGSKSMGYDFDDSLSIGLDNWLVEDEKTVRSTRL 216

Query: 1417 LEXXXXXXXXXXXXV---LFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTF 1247
            LE                L HE ++   +DVR+++NEGFN NDPLRLFL GPE KQ+LT 
Sbjct: 217  LERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRKINEGFNQNDPLRLFLWGPETKQLLTA 276

Query: 1246 EEESQLIVQVQDLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREK 1067
            EEE++LI +VQDL KLE+VK R QSQFGREPTLVEWAEA G+SC +L+SQLRSGT  REK
Sbjct: 277  EEEAELIARVQDLFKLEEVKNRLQSQFGREPTLVEWAEAVGISCQILKSQLRSGTSSREK 336

Query: 1066 LIYANLRMVVHIAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQK 887
            LIYANLRMVVHIAKQYQGRG+GLQDL+QEGS GLMKSVEKFKPQ GCRFATYAYWWIRQ 
Sbjct: 337  LIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQT 396

Query: 886  IRKAIFQHSRTIRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLL 707
            +RKAIFQHSRTIRLPENVYT L KVL+AK+  IQEGNH P+KE+LA+RVGITVEKL+KLL
Sbjct: 397  VRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLQKLL 456

Query: 706  FTTRMPLSMQQRVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQI 527
            ++TRMPLSMQQ VWADQD+TFQEITADTG EIP VSV KQLMR+HVR+LL IL  RERQI
Sbjct: 457  YSTRMPLSMQQPVWADQDSTFQEITADTGTEIPHVSVEKQLMRQHVRHLLGILNLRERQI 516

Query: 526  IRLRFGIEGGNHKSLSEIGNIYGLSKERVRQIESRALYKLRQCLGSHG 383
            IRLRFGIE G  +SLSEIGN++GLSKERVRQ+ESRA  KL+Q LGS G
Sbjct: 517  IRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQG 564


>ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Pyrus x bretschneideri]
          Length = 610

 Score =  625 bits (1612), Expect = e-176
 Identities = 336/528 (63%), Positives = 391/528 (74%), Gaps = 6/528 (1%)
 Frame = -1

Query: 1948 VLMFNEQIASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVD 1778
            VLM +EQ  + V SVP   +AR F TSV+ QEQ DEFK LL     EK +QA LDR Q++
Sbjct: 74   VLMLHEQATAAVPSVPITFVARHFPTSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIE 133

Query: 1777 TGNLVHEDKHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKH 1598
            T   ++ED       QL+ D E QLL+ +G   +  SLQT V  S  LTV+P    + KH
Sbjct: 134  TKASLNEDLDIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTGVKLSAPLTVEPITTASSKH 193

Query: 1597 MDVELCDXXXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRL 1418
            MD++  D                      K +  D DDS S+G+ N+L + EKTVRSTRL
Sbjct: 194  MDIKPSDAVALAKKALSASKEAVSFADGSKSMGYDFDDSLSIGLDNWLVEDEKTVRSTRL 253

Query: 1417 LEXXXXXXXXXXXXV---LFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTF 1247
            LE                L HE ++   +DVR+++NEGFN NDPLRLFL GPE KQ+LT 
Sbjct: 254  LERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRKINEGFNQNDPLRLFLWGPETKQLLTA 313

Query: 1246 EEESQLIVQVQDLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREK 1067
            EEE++LI +VQDL KLE+VK R QSQFGREPTLVEWAEA G+SC +L+SQLRSGT  REK
Sbjct: 314  EEEAELIARVQDLFKLEEVKNRLQSQFGREPTLVEWAEAVGISCQILKSQLRSGTSSREK 373

Query: 1066 LIYANLRMVVHIAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQK 887
            LIYANLRMVVHIAKQYQGRG+GLQDL+QEGS GLMKSVEKFKPQ GCRFATYAYWWIRQ 
Sbjct: 374  LIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQT 433

Query: 886  IRKAIFQHSRTIRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLL 707
            +RKAIFQHSRTIRLPENVYT L KVL+AK+  IQEGNH P+KE+LA+RVGITVEKL+KLL
Sbjct: 434  VRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLQKLL 493

Query: 706  FTTRMPLSMQQRVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQI 527
            ++TRMPLSMQQ VWADQD+TFQEITADTG EIP VSV KQLMR+HVR+LL IL  RERQI
Sbjct: 494  YSTRMPLSMQQPVWADQDSTFQEITADTGTEIPHVSVEKQLMRQHVRHLLGILNLRERQI 553

Query: 526  IRLRFGIEGGNHKSLSEIGNIYGLSKERVRQIESRALYKLRQCLGSHG 383
            IRLRFGIE G  +SLSEIGN++GLSKERVRQ+ESRA  KL+Q LGS G
Sbjct: 554  IRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQG 601


>ref|XP_010107506.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587929013|gb|EXC16188.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 543

 Score =  624 bits (1610), Expect = e-176
 Identities = 342/557 (61%), Positives = 398/557 (71%), Gaps = 3/557 (0%)
 Frame = -1

Query: 2050 MEAARXXXXXXXXXXPRTHFRNXXXXXXXXXXXSVLMFNEQIASTVSSVPAASMARRFST 1871
            ME  R           RTH RN                +  +A+ ++S+PA S+A+ FST
Sbjct: 1    MEVGRNLLSPPPSFPSRTHLRNYLPSSSSAST------SANVATGITSMPATSIAQPFST 54

Query: 1870 SVVSQEQGDEFKSLLRV---EKANQAMLDRRQVDTGNLVHEDKHFGDSNQLLLDFERQLL 1700
            SV+ QEQ DEFK LLRV   +K +Q +L+RRQ D+G LVHED    D NQ + +FER  +
Sbjct: 55   SVLLQEQRDEFKPLLRVNKEDKTSQGVLNRRQNDSGALVHEDT-LEDYNQFVWEFERPSV 113

Query: 1699 HWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMDVELCDXXXXXXXXXXXXXXXXXXX 1520
            HW GFWH+LPSL+TKV  S+SLT++ +     K +DVE+ D                   
Sbjct: 114  HWPGFWHVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLA 173

Query: 1519 XXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRLLEXXXXXXXXXXXXVLFHENHTSRGA 1340
               K++  DSDD  S+   +FLG  +KTVRSTRLLE            VLF+EN  +R A
Sbjct: 174  EESKLVGTDSDDMLSV---SFLGKGDKTVRSTRLLERRSKRRKVPESSVLFYENPRNRAA 230

Query: 1339 DVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQDLLKLEQVKTRFQSQFGR 1160
            D+RKRL+EG N +DPLRLFL GPE +Q+LTFEEES+LI QVQDL+KLEQVK R QS+FGR
Sbjct: 231  DIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSEFGR 290

Query: 1159 EPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVHIAKQYQGRGVGLQDLLQE 980
            EPTLVEWAEA GLSC +LQSQ++SGT  REKLI ANLR+VVHIAKQYQGRGVG+QDL+QE
Sbjct: 291  EPTLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDLMQE 350

Query: 979  GSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRTIRLPENVYTQLAKVLDAK 800
            GS GLMKSVEKFKPQVGCRFA+YAYWWIRQ                ENVYT L KVL+AK
Sbjct: 351  GSMGLMKSVEKFKPQVGCRFASYAYWWIRQ---------------TENVYTLLGKVLEAK 395

Query: 799  RLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQRVWADQDTTFQEITADTG 620
            R  IQEGNH PSKEDLA RVGITVEKL KLL+ TR+PLSMQQ VWADQ TTFQE+TADT 
Sbjct: 396  RSSIQEGNHNPSKEDLATRVGITVEKLNKLLYMTRIPLSMQQPVWADQSTTFQEVTADTR 455

Query: 619  IEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGNHKSLSEIGNIYGLSKERV 440
            IEIPDVSVAKQ+MR+HVR LL  L  RERQIIRLRFGIE GN KSLSEIG +YGLSKERV
Sbjct: 456  IEIPDVSVAKQMMRQHVRGLLRSLNVRERQIIRLRFGIEDGNQKSLSEIGRMYGLSKERV 515

Query: 439  RQIESRALYKLRQCLGS 389
            RQ+ESRALYKL+QCLGS
Sbjct: 516  RQLESRALYKLKQCLGS 532


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  623 bits (1607), Expect = e-175
 Identities = 337/562 (59%), Positives = 404/562 (71%), Gaps = 6/562 (1%)
 Frame = -1

Query: 2050 MEAARXXXXXXXXXXPRTHFRNXXXXXXXXXXXSVLMFNEQIASTVSSVPAASMARRFST 1871
            MEA R            TH R+            VLM +EQ    V+SVP  S+AR F T
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTS--VLMLHEQAVPAVTSVPITSVARHFPT 58

Query: 1870 SVVSQEQGDEFKSLLRV---EKANQAMLDRRQVDTGNLVHEDKHFGDSNQLLLDFERQLL 1700
            SV+ QEQ DEFK LL V   +K ++A LDR Q++TG  VHED    D   L+   + QLL
Sbjct: 59   SVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLL 118

Query: 1699 HWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMDVELCDXXXXXXXXXXXXXXXXXXX 1520
            +      +  SLQT    ST LT++     + KHMDVE C+                   
Sbjct: 119  NHD-ILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLA 177

Query: 1519 XXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRLLEXXXXXXXXXXXXV---LFHENHTS 1349
               + + AD DD     +AN++ ++EKTVRSTR+LE                + HE+++ 
Sbjct: 178  EDSQSMGADFDDLGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSF 237

Query: 1348 RGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQDLLKLEQVKTRFQSQ 1169
             G+DVRK+++EGFNPNDPLRLFL GPE +Q+LT +EE++LI +VQDL KLE+VK+R Q+Q
Sbjct: 238  TGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQ 297

Query: 1168 FGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVHIAKQYQGRGVGLQDL 989
            FGREPTL+EWAEA G+SC +L+SQLRSGT  REKLIYANLRMVVHIAKQYQGRG+GLQDL
Sbjct: 298  FGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDL 357

Query: 988  LQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRTIRLPENVYTQLAKVL 809
            +QEGS GLMKSVEKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY+ L KVL
Sbjct: 358  MQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVL 417

Query: 808  DAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQRVWADQDTTFQEITA 629
            +AK+  IQEGNH P+KE+LA+RVGITVEKLEKLL+ TRMPLSMQQ VWADQDTTFQE+TA
Sbjct: 418  EAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTA 477

Query: 628  DTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGNHKSLSEIGNIYGLSK 449
            DTG+EIPDVSVAKQLMR+HVR+LLSIL  RER+IIRLR+GIE G  +SLSEIG ++GLSK
Sbjct: 478  DTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSK 537

Query: 448  ERVRQIESRALYKLRQCLGSHG 383
            ERVRQ+ESRA  KLRQ LGS G
Sbjct: 538  ERVRQLESRAFLKLRQSLGSQG 559


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  615 bits (1587), Expect = e-173
 Identities = 337/567 (59%), Positives = 404/567 (71%), Gaps = 11/567 (1%)
 Frame = -1

Query: 2050 MEAARXXXXXXXXXXPRTHFRNXXXXXXXXXXXSVLMFNEQIASTVSSVPAASMARRFST 1871
            MEA R            TH R+            VLM +EQ    V+SVP  S+AR F T
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTS--VLMLHEQAVPAVTSVPITSVARHFPT 58

Query: 1870 SVVSQEQGDEFKSLLRV---EKANQAMLDRRQVDTGNLVHEDKHFGDSNQLLLDFERQLL 1700
            SV+ QEQ DEFK LL V   +K ++A LDR Q++TG  VHED    D   L+   + QLL
Sbjct: 59   SVLLQEQRDEFKPLLHVLKEDKTSEATLDRMQIETGASVHEDLDIDDFYPLVNGSKPQLL 118

Query: 1699 HWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMDVELCDXXXXXXXXXXXXXXXXXXX 1520
            +      +  SLQT    ST +T++     + KHMDVE C+                   
Sbjct: 119  N-PDILDVFSSLQTGAKPSTPVTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLA 177

Query: 1519 XXXKIIEADSDDSHSLGMA-----NFLGDKEKTVRSTRLLEXXXXXXXXXXXXV---LFH 1364
               + + AD D+S SLG+      N++ ++EKTVRSTR+LE                + H
Sbjct: 178  EDSQSMGADFDESLSLGLGYTSLDNWIVEEEKTVRSTRILERRRKRIKTRKVPKSKLIGH 237

Query: 1363 ENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQDLLKLEQVKT 1184
            E+++   +DV K+++EGFNPNDPLRLFL GPE +Q+LT +EE++LI +VQDL KLE+VK+
Sbjct: 238  ESNSFTSSDVPKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKS 297

Query: 1183 RFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVHIAKQYQGRGV 1004
            R Q+QFGREPTL+EWAEA G+SC +L+SQLRSGT  REKLIYANLRMVVHIAKQYQGRG+
Sbjct: 298  RLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGL 357

Query: 1003 GLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRTIRLPENVYTQ 824
            GLQDL+QEGS GLMKSVEKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY+ 
Sbjct: 358  GLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSL 417

Query: 823  LAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQRVWADQDTTF 644
            L KVL+AK+  IQEGNH P+KE+LA RVGITVEKLEKLL+ TRMPLSMQQ VWADQDTTF
Sbjct: 418  LGKVLEAKKSCIQEGNHNPNKEELAIRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTF 477

Query: 643  QEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGNHKSLSEIGNI 464
            QE+TADTG+EIPDVSVAKQLMR+HVR+LLSIL  RERQIIRLR+GIE G  +SLSEIG +
Sbjct: 478  QEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGM 537

Query: 463  YGLSKERVRQIESRALYKLRQCLGSHG 383
            +GLSKERVRQ+ESRA  KLRQ LGS G
Sbjct: 538  FGLSKERVRQLESRAFLKLRQSLGSQG 564


>ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigF,
            chloroplastic-like [Malus domestica]
          Length = 571

 Score =  613 bits (1582), Expect = e-172
 Identities = 333/528 (63%), Positives = 388/528 (73%), Gaps = 6/528 (1%)
 Frame = -1

Query: 1948 VLMFNEQIASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVD 1778
            VLM +EQ    V+SVP   +AR F TSV+ QEQ DEFK LL     EK +QA LDR Q++
Sbjct: 36   VLMLHEQATPAVTSVPITFVARHFPTSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIE 95

Query: 1777 TGNLVHEDKHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKH 1598
                ++ED       QL+ D E QLL+ +G   +  SLQT+V SS  LT++P    + KH
Sbjct: 96   ARASLNEDLKIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTRVKSSALLTMEPITTASSKH 155

Query: 1597 MDVELCDXXXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRL 1418
            MD++  D                      K +  D   + S G+ N+L + EKTVRS RL
Sbjct: 156  MDIKPSDAVALAKKALSASKEAVSFAEDSKSM-GDXLMTVSEGLDNWLVEDEKTVRSARL 214

Query: 1417 LEXXXXXXXXXXXXV---LFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTF 1247
            LE                L HE +    +DVRK++NEG NPNDPLRLFL GPE KQ+LT 
Sbjct: 215  LERRRRRLKKKRVSKSKVLIHETNGPTSSDVRKKINEGLNPNDPLRLFLWGPETKQLLTA 274

Query: 1246 EEESQLIVQVQDLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREK 1067
            +EE++LI QVQDL KLE+VK+R QSQFGREPTLVEWAEA G+SC +L+SQLRSGT  REK
Sbjct: 275  KEEAELIAQVQDLFKLEEVKSRLQSQFGREPTLVEWAEAVGISCQILKSQLRSGTSSREK 334

Query: 1066 LIYANLRMVVHIAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQK 887
            LIYANLRMVVHIAKQYQGRG+GLQDL+QEGS GLMKSVEKFKPQ GCRFATYAYWWIRQ 
Sbjct: 335  LIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQT 394

Query: 886  IRKAIFQHSRTIRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLL 707
            +RKAIFQHSRTIRLPENVYT L KVL+AK+  IQEGNH P+KE+LA+RVGITVEKL+KLL
Sbjct: 395  VRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLQKLL 454

Query: 706  FTTRMPLSMQQRVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQI 527
            ++TRMPLSMQQ VWADQDTTFQEITADTG EIP VSV KQLMR+HVR+LL IL  RERQI
Sbjct: 455  YSTRMPLSMQQPVWADQDTTFQEITADTGTEIPHVSVEKQLMRQHVRHLLGILNLRERQI 514

Query: 526  IRLRFGIEGGNHKSLSEIGNIYGLSKERVRQIESRALYKLRQCLGSHG 383
            IRLRFGIE G  +SLSEIGN++GLSKERVRQ+ESRA  KL+Q LGS G
Sbjct: 515  IRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQG 562


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  593 bits (1528), Expect = e-166
 Identities = 309/522 (59%), Positives = 382/522 (73%), Gaps = 3/522 (0%)
 Frame = -1

Query: 1948 VLMFNEQIASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVD 1778
            VLM NEQ A  V+SVP +S+AR F TSV+ QEQ DE++ LL +   +K +QA  D R ++
Sbjct: 36   VLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNME 95

Query: 1777 TGNLVHEDKHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKH 1598
            T     E+K+ GD +QL+ D E Q LHW   W+L P ++   + S SLT+       ++ 
Sbjct: 96   TEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEES 155

Query: 1597 MDVELCDXXXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRL 1418
            +D E  D                      K+  A+  D        +  ++ KTVRST+ 
Sbjct: 156  VDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQF 215

Query: 1417 LEXXXXXXXXXXXXVLFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEE 1238
            LE            V  HE + SR A V+K+L+EGF+ NDPLRLFL GPE +++LT +EE
Sbjct: 216  LERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEE 275

Query: 1237 SQLIVQVQDLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIY 1058
             +LI Q+QDL++LE+ K++ QSQFGREPTL+EWA+A GLSC  L+S+L SG   REKLI 
Sbjct: 276  FELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335

Query: 1057 ANLRMVVHIAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRK 878
            ANLR+VVH+AKQYQGRG+GL DLLQEGS GLMKSVEKFKPQ GCRFA+YAYWW+RQ IRK
Sbjct: 336  ANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395

Query: 877  AIFQHSRTIRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTT 698
            AIFQHSRTIRLPEN+YT L++VL+AKRLYIQEGNH P KEDLA+RVGITVEKLE+L+F T
Sbjct: 396  AIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455

Query: 697  RMPLSMQQRVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRL 518
            RMPLSMQQ VWADQDTTFQEITADTG+EIPD+SV KQLMR+HVRNLL++L  +ER I+RL
Sbjct: 456  RMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRL 515

Query: 517  RFGIEGGNHKSLSEIGNIYGLSKERVRQIESRALYKLRQCLG 392
            RFGIE G  KSLSE+GNI+GLSKERVRQ+ESRALY+L+Q LG
Sbjct: 516  RFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  593 bits (1528), Expect = e-166
 Identities = 309/522 (59%), Positives = 382/522 (73%), Gaps = 3/522 (0%)
 Frame = -1

Query: 1948 VLMFNEQIASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVD 1778
            VLM NEQ A  V+SVP +S+AR F TSV+ QEQ DE++ LL +   +K +QA  D R ++
Sbjct: 37   VLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNME 96

Query: 1777 TGNLVHEDKHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKH 1598
            T     E+K+ GD +QL+ D E Q LHW   W+L P ++   + S SLT+       ++ 
Sbjct: 97   TEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEES 156

Query: 1597 MDVELCDXXXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRL 1418
            +D E  D                      K+  A+  D        +  ++ KTVRST+ 
Sbjct: 157  VDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQF 216

Query: 1417 LEXXXXXXXXXXXXVLFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEE 1238
            LE            V  HE + SR A V+K+L+EGF+ NDPLRLFL GPE +++LT +EE
Sbjct: 217  LERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEE 276

Query: 1237 SQLIVQVQDLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIY 1058
             +LI Q+QDL++LE+ K++ QSQFGREPTL+EWA+A GLSC  L+S+L SG   REKLI 
Sbjct: 277  FELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 336

Query: 1057 ANLRMVVHIAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRK 878
            ANLR+VVH+AKQYQGRG+GL DLLQEGS GLMKSVEKFKPQ GCRFA+YAYWW+RQ IRK
Sbjct: 337  ANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 396

Query: 877  AIFQHSRTIRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTT 698
            AIFQHSRTIRLPEN+YT L++VL+AKRLYIQEGNH P KEDLA+RVGITVEKLE+L+F T
Sbjct: 397  AIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 456

Query: 697  RMPLSMQQRVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRL 518
            RMPLSMQQ VWADQDTTFQEITADTG+EIPD+SV KQLMR+HVRNLL++L  +ER I+RL
Sbjct: 457  RMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRL 516

Query: 517  RFGIEGGNHKSLSEIGNIYGLSKERVRQIESRALYKLRQCLG 392
            RFGIE G  KSLSE+GNI+GLSKERVRQ+ESRALY+L+Q LG
Sbjct: 517  RFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 558


>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Populus euphratica]
          Length = 557

 Score =  585 bits (1509), Expect = e-164
 Identities = 314/559 (56%), Positives = 382/559 (68%), Gaps = 3/559 (0%)
 Frame = -1

Query: 2050 MEAARXXXXXXXXXXPRTHFRNXXXXXXXXXXXSVLMFNEQIASTVSSVPAASMARRFST 1871
            MEA R           RTH +N            VL+  EQ    V+++P  S A+ F T
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLCSS-------VLILREQATPAVTAIPTTSTAQHFPT 53

Query: 1870 SVVSQEQGDEFKSLLRV---EKANQAMLDRRQVDTGNLVHEDKHFGDSNQLLLDFERQLL 1700
            SV+ QEQ DEF+ L  +   ++ +QA LDRR+ + G   HE K   + +Q++ +FE QL 
Sbjct: 54   SVLLQEQRDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKDSDELDQMVENFEYQLH 113

Query: 1699 HWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMDVELCDXXXXXXXXXXXXXXXXXXX 1520
            HW  +W+LLP  Q   N S S T         K +DVE  D                   
Sbjct: 114  HWPTYWNLLPPSQKGQNPSMSFTTQSVTRSTDKLIDVEPTDVINLAKRALSASKHAAFLA 173

Query: 1519 XXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRLLEXXXXXXXXXXXXVLFHENHTSRGA 1340
                    D D+  S   ++F  ++ + VRS R L              +  E + S+ A
Sbjct: 174  DN----STDLDNLASTSSSSFSLEEVRIVRSRRHLARQSLNRRVPKTKDMIFETYDSKSA 229

Query: 1339 DVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQDLLKLEQVKTRFQSQFGR 1160
            DV+KRL++GF+PNDPLRLFL GPE KQ+LT +EE +LI Q+QDL+ LE VK R +SQFGR
Sbjct: 230  DVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGR 289

Query: 1159 EPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVHIAKQYQGRGVGLQDLLQE 980
            EPTLVEWA+A GLSC++L+ QL SG R REKLI ANLRMVVHIAK+YQ RG+GLQDLLQE
Sbjct: 290  EPTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQE 349

Query: 979  GSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRTIRLPENVYTQLAKVLDAK 800
            G+ GLMKS+EKFKPQ GCRFATYAYWWIRQ I KAIFQHSRTIRLPENVY  L KV++AK
Sbjct: 350  GTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAK 409

Query: 799  RLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQRVWADQDTTFQEITADTG 620
            R YIQEGNH P+ E++A+RVGI ++KLEKLL  TR PLSMQQ VW+DQ+TTFQEITADT 
Sbjct: 410  RSYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTE 469

Query: 619  IEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGNHKSLSEIGNIYGLSKERV 440
            IEIPDVSVAKQLMRKH+R LL+IL  +ER+IIRLRFGIE G  KSLSEIGN++GLSKERV
Sbjct: 470  IEIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERV 529

Query: 439  RQIESRALYKLRQCLGSHG 383
            RQ+ESRALYKL+QC+GSHG
Sbjct: 530  RQLESRALYKLKQCVGSHG 548


>gb|KDO48072.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 569

 Score =  583 bits (1504), Expect = e-163
 Identities = 305/522 (58%), Positives = 376/522 (72%), Gaps = 3/522 (0%)
 Frame = -1

Query: 1948 VLMFNEQIASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVD 1778
            VLM NEQ A  V+SVP +S+AR F TSV+ QEQ DE++ LL +   +K +QA  D R ++
Sbjct: 36   VLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIE 95

Query: 1777 TGNLVHEDKHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKH 1598
            T     E+K+ GD +QL+ D E Q LHW   W+L P ++   + S SLT+       ++ 
Sbjct: 96   TEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEES 155

Query: 1597 MDVELCDXXXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRL 1418
            +D E  D                      K+  A+  D        +  ++ K     R 
Sbjct: 156  VDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRF 215

Query: 1417 LEXXXXXXXXXXXXVLFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEE 1238
            LE            V  HE + SR A V+K+L+EGF+ NDPLRLFL GPE +++LT +EE
Sbjct: 216  LERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEE 275

Query: 1237 SQLIVQVQDLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIY 1058
             +LI Q+QDL++LE+ K++ QSQFGREPTL+EWA+A GLSC  L+S+L SG   REKLI 
Sbjct: 276  FELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335

Query: 1057 ANLRMVVHIAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRK 878
            ANLR+VVH+AKQYQGRG+ L DLLQEGS GLMKSVEKFKPQ GCRFA+YAYWW+RQ IRK
Sbjct: 336  ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395

Query: 877  AIFQHSRTIRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTT 698
            AIFQHSRTIRLPEN+YT L+KVL+AKRLYIQEGNH P KEDLA+RVGITVEKLE+L+F T
Sbjct: 396  AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455

Query: 697  RMPLSMQQRVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRL 518
            RMPLSMQQ VWADQDTTFQEITADTG+EIPD+SV KQLMR+HVRNLL++L  +ER I+RL
Sbjct: 456  RMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRL 515

Query: 517  RFGIEGGNHKSLSEIGNIYGLSKERVRQIESRALYKLRQCLG 392
            RFGIE G  KSLSE+GNI+GLSKERVRQ+ESRALY+L+Q LG
Sbjct: 516  RFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  583 bits (1502), Expect = e-163
 Identities = 303/514 (58%), Positives = 376/514 (73%), Gaps = 3/514 (0%)
 Frame = -1

Query: 1924 ASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVDTGNLVHED 1754
            A  V+SVP +S+AR F TSV+ QEQ DE++ LL +   +K +QA  D R ++T     E+
Sbjct: 36   APAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEE 95

Query: 1753 KHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMDVELCDX 1574
            K+ GD +QL+ D E Q LHW   W+L P ++   + S SLT+       ++ +D E  D 
Sbjct: 96   KNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDA 155

Query: 1573 XXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRLLEXXXXXX 1394
                                 K+  A+  D        +  ++ KTVRST+ LE      
Sbjct: 156  VALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKR 215

Query: 1393 XXXXXXVLFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQ 1214
                  V  HE + SR A V+K+L+EGF+ NDPLRLFL GPE +++LT +EE +LI Q+Q
Sbjct: 216  KVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 275

Query: 1213 DLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVH 1034
            DL++LE+ K++ QSQFGREPTL+EWA+A GLSC  L+S+L SG   REKLI ANLR+VVH
Sbjct: 276  DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 335

Query: 1033 IAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRT 854
            +AKQYQGRG+GL DLLQEGS GLMKSVEKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRT
Sbjct: 336  VAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 395

Query: 853  IRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQ 674
            IRLPEN+YT L++VL+AKRLYIQEGNH P KEDLA+RVGITVEKLE+L+F TRMPLSMQQ
Sbjct: 396  IRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQ 455

Query: 673  RVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGN 494
             VWADQDTTFQEITADTG+EIPD+SV KQLMR+HVRNLL++L  +ER I+RLRFGIE G 
Sbjct: 456  PVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGK 515

Query: 493  HKSLSEIGNIYGLSKERVRQIESRALYKLRQCLG 392
             KSLSE+GNI+GLSKERVRQ+ESRALY+L+Q LG
Sbjct: 516  PKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  581 bits (1498), Expect = e-163
 Identities = 306/522 (58%), Positives = 377/522 (72%), Gaps = 3/522 (0%)
 Frame = -1

Query: 1948 VLMFNEQIASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVD 1778
            VLM NEQ A  V+SVP +S+AR F TSV+ QEQ DE++ LL +   +K +QA  D R ++
Sbjct: 36   VLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNME 95

Query: 1777 TGNLVHEDKHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKH 1598
            T     E+K+ GD +QL+ D E Q LHW   W+L P ++   + S SLT+       ++ 
Sbjct: 96   TEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEES 155

Query: 1597 MDVELCDXXXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRL 1418
            +D E  D                      K+  A+  D        +  ++ KTVRSTR 
Sbjct: 156  VDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRF 215

Query: 1417 LEXXXXXXXXXXXXVLFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEE 1238
            LE            V  HE + SR A V+K+L+EGF+PNDPLRLFL GPE +++LT +EE
Sbjct: 216  LERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEE 275

Query: 1237 SQLIVQVQDLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIY 1058
             +LI Q+QDL++LE+ K++ QSQFGREPTL+       LSC  L+S+L SG   REKLI 
Sbjct: 276  FELIAQIQDLIRLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLIN 335

Query: 1057 ANLRMVVHIAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRK 878
            ANLR+VVH+AKQYQGRG+GL DLLQEGS GLMKSVEKFKPQ GCRFA+YAYWW+RQ IRK
Sbjct: 336  ANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395

Query: 877  AIFQHSRTIRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTT 698
            AIFQHSRTIRLPEN+YT L++VL+AKRLYIQEGNH P KEDLA+RVGITVEKLE+L+F T
Sbjct: 396  AIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455

Query: 697  RMPLSMQQRVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRL 518
            RMPLSMQQ VWADQDTTFQEITADTG+EIPD+SV KQLMR+HVRNLL++L  +ER I+RL
Sbjct: 456  RMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRL 515

Query: 517  RFGIEGGNHKSLSEIGNIYGLSKERVRQIESRALYKLRQCLG 392
            RFGIE G  KSLSE+GNI+GLSKERVRQ+ESRALY+L+Q LG
Sbjct: 516  RFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  581 bits (1497), Expect = e-162
 Identities = 320/567 (56%), Positives = 403/567 (71%), Gaps = 8/567 (1%)
 Frame = -1

Query: 2059 FMQMEAARXXXXXXXXXXPRTHFRNXXXXXXXXXXXSVLMFNEQIASTVSSVPAASMARR 1880
            +  MEA            PRTHFRN            VLM ++Q+A  V+S+P  ++AR+
Sbjct: 4    YSSMEAGTNILSSTPSFPPRTHFRNSSSS--------VLMLHDQVAPAVASIPT-TIARK 54

Query: 1879 FSTSVVSQEQGDEFKSL---LRVEKANQAMLDRRQVDTGNLVHEDKHFGDSNQLLLDFER 1709
            F TSV+ QEQ DE++     L+ E+  QA L++RQ++   +  ++++  D NQ +++FER
Sbjct: 55   FPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIV-VSADEENSDDHNQYMVNFER 113

Query: 1708 QLLHWTGFWHLLPSLQTKVNSSTSLTVDPS-KAGAKKHMDVELCDXXXXXXXXXXXXXXX 1532
            QLL   G W+ LPS QT   S  S ++  S     +  MDV+ CD               
Sbjct: 114  QLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQA 173

Query: 1531 XXXXXXXKIIEADSDDSHSLGMANF----LGDKEKTVRSTRLLEXXXXXXXXXXXXVLFH 1364
                   K++ AD +DS S  +       L  +EKTVRSTRLLE            V  H
Sbjct: 174  VSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV--H 231

Query: 1363 ENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQDLLKLEQVKT 1184
            ENH SR A+V++++NEG++P DPLRLFL GPE +++LT +EES+LIVQ+Q+L++LE+VK 
Sbjct: 232  ENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKK 291

Query: 1183 RFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVHIAKQYQGRGV 1004
            R QS   REPT+VEWAEA GLSC +LQSQL SG R R+KLIYANLRMVVHIAKQYQGRG+
Sbjct: 292  RLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGL 351

Query: 1003 GLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRTIRLPENVYTQ 824
             LQDLLQEGS GLM SVEKFKP  GCRFA+YAYWWIRQ +RKAIFQHSRTIRLPEN+Y+ 
Sbjct: 352  NLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSL 411

Query: 823  LAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQRVWADQDTTF 644
            L KV +AKRL+IQEG+H P+KE++A+RVGIT+EKL++LL  TRMPLSMQQ VWADQDTTF
Sbjct: 412  LGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTF 471

Query: 643  QEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGNHKSLSEIGNI 464
            QE+TADTGIEIPDVSVAKQLMR+HVRNLL +L  +ER+IIRLRFGI  G  ++LSEIG +
Sbjct: 472  QEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLV 531

Query: 463  YGLSKERVRQIESRALYKLRQCLGSHG 383
            +G SKERVRQ+E RAL+KL+QCL SHG
Sbjct: 532  FGFSKERVRQLEQRALHKLKQCLSSHG 558


>gb|KDO48082.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 532

 Score =  580 bits (1496), Expect = e-162
 Identities = 303/520 (58%), Positives = 374/520 (71%), Gaps = 3/520 (0%)
 Frame = -1

Query: 1942 MFNEQIASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVDTG 1772
            M NEQ A  V+SVP +S+AR F TSV+ QEQ DE++ LL +   +K +QA  D R ++T 
Sbjct: 1    MHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETE 60

Query: 1771 NLVHEDKHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMD 1592
                E+K+ GD +QL+ D E Q LHW   W+L P ++   + S SLT+       ++ +D
Sbjct: 61   AFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVD 120

Query: 1591 VELCDXXXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRLLE 1412
             E  D                      K+  A+  D        +  ++ K     R LE
Sbjct: 121  AEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLE 180

Query: 1411 XXXXXXXXXXXXVLFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQ 1232
                        V  HE + SR A V+K+L+EGF+ NDPLRLFL GPE +++LT +EE +
Sbjct: 181  RRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFE 240

Query: 1231 LIVQVQDLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYAN 1052
            LI Q+QDL++LE+ K++ QSQFGREPTL+EWA+A GLSC  L+S+L SG   REKLI AN
Sbjct: 241  LIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINAN 300

Query: 1051 LRMVVHIAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAI 872
            LR+VVH+AKQYQGRG+ L DLLQEGS GLMKSVEKFKPQ GCRFA+YAYWW+RQ IRKAI
Sbjct: 301  LRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI 360

Query: 871  FQHSRTIRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRM 692
            FQHSRTIRLPEN+YT L+KVL+AKRLYIQEGNH P KEDLA+RVGITVEKLE+L+F TRM
Sbjct: 361  FQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRM 420

Query: 691  PLSMQQRVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRF 512
            PLSMQQ VWADQDTTFQEITADTG+EIPD+SV KQLMR+HVRNLL++L  +ER I+RLRF
Sbjct: 421  PLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRF 480

Query: 511  GIEGGNHKSLSEIGNIYGLSKERVRQIESRALYKLRQCLG 392
            GIE G  KSLSE+GNI+GLSKERVRQ+ESRALY+L+Q LG
Sbjct: 481  GIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  580 bits (1495), Expect = e-162
 Identities = 320/564 (56%), Positives = 402/564 (71%), Gaps = 8/564 (1%)
 Frame = -1

Query: 2050 MEAARXXXXXXXXXXPRTHFRNXXXXXXXXXXXSVLMFNEQIASTVSSVPAASMARRFST 1871
            MEA            PRTHFRN            VLM ++Q+A  V+S+P  ++AR+F T
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSS--------VLMLHDQVAPAVASIPT-TIARKFPT 51

Query: 1870 SVVSQEQGDEFKSL---LRVEKANQAMLDRRQVDTGNLVHEDKHFGDSNQLLLDFERQLL 1700
            SV+ QEQ DE++     L+ E+  QA L++RQ++   +  ++++  D NQ +++FERQLL
Sbjct: 52   SVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIV-VSADEENSDDHNQYMVNFERQLL 110

Query: 1699 HWTGFWHLLPSLQTKVNSSTSLTVDPS-KAGAKKHMDVELCDXXXXXXXXXXXXXXXXXX 1523
               G W+ LPS QT   S  S ++  S     +  MDV+ CD                  
Sbjct: 111  LQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSL 170

Query: 1522 XXXXKIIEADSDDSHSLGMANF----LGDKEKTVRSTRLLEXXXXXXXXXXXXVLFHENH 1355
                K++ AD +DS S  +       L  +EKTVRSTRLLE            V  HENH
Sbjct: 171  YENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV--HENH 228

Query: 1354 TSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQDLLKLEQVKTRFQ 1175
             SR A+V++++NEG++P DPLRLFL GPE +++LT +EES+LIVQ+Q+L++LE+VK R Q
Sbjct: 229  GSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQ 288

Query: 1174 SQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVHIAKQYQGRGVGLQ 995
            S   REPT+VEWAEA GLSC +LQSQL SG R R+KLIYANLRMVVHIAKQYQGRG+ LQ
Sbjct: 289  SHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQ 348

Query: 994  DLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRTIRLPENVYTQLAK 815
            DLLQEGS GLM SVEKFKP  GCRFA+YAYWWIRQ +RKAIFQHSRTIRLPEN+Y+ L K
Sbjct: 349  DLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGK 408

Query: 814  VLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQRVWADQDTTFQEI 635
            V +AKRL+IQEG+H P+KE++A+RVGIT+EKL++LL  TRMPLSMQQ VWADQDTTFQE+
Sbjct: 409  VKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEV 468

Query: 634  TADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGNHKSLSEIGNIYGL 455
            TADTGIEIPDVSVAKQLMR+HVRNLL +L  +ER+IIRLRFGI  G  ++LSEIG ++G 
Sbjct: 469  TADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGF 528

Query: 454  SKERVRQIESRALYKLRQCLGSHG 383
            SKERVRQ+E RAL+KL+QCL SHG
Sbjct: 529  SKERVRQLEQRALHKLKQCLSSHG 552


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Fragaria
            vesca subsp. vesca]
          Length = 554

 Score =  580 bits (1495), Expect = e-162
 Identities = 324/528 (61%), Positives = 383/528 (72%), Gaps = 6/528 (1%)
 Frame = -1

Query: 1948 VLMFNEQIASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVD 1778
            VLM +EQ A  V+SVP + + R F TSV+ QEQ DEFK LL +   EKA+QA LDR Q++
Sbjct: 33   VLMLHEQAAPAVTSVPTSFITRHFPTSVLLQEQRDEFKPLLHIFKEEKASQATLDRIQIE 92

Query: 1777 TGNLVHEDKHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKH 1598
                  ED +  D  +L+ DF RQL       H+ PS Q   NS T   ++ S   A  H
Sbjct: 93   N-TTAEEDFNIDDFYKLVKDF-RQL-------HVTPS-QIGENSPTGSALE-SNTTANVH 141

Query: 1597 MDVELCDXXXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRL 1418
            MDVE  D                      K I A  ++S SLG    LG +E+TVRST+L
Sbjct: 142  MDVEPSDVLTLAKHALSASLEAASLAETSKSISAGLNESTSLG----LGWEEETVRSTQL 197

Query: 1417 LEXXXXXXXXXXXXVLF---HENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTF 1247
            LE                  +EN +S  +D+R++  EG NPNDPLRLFL GPE +Q+LT 
Sbjct: 198  LERRRKRLKKRNLLNSKVPNYENSSSNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTL 257

Query: 1246 EEESQLIVQVQDLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREK 1067
            +EE++LI +VQD+ KLE VK+R QSQFGREPTL+EWAEA G+SC MLQSQLR GT  REK
Sbjct: 258  KEETELIARVQDVFKLEAVKSRLQSQFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREK 317

Query: 1066 LIYANLRMVVHIAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQK 887
            LIY+NLRMVVHIAKQYQGRG+GLQDLLQEGS GLMKSVEKFKPQ GCRFATYAYWW+RQ 
Sbjct: 318  LIYSNLRMVVHIAKQYQGRGLGLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQT 377

Query: 886  IRKAIFQHSRTIRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLL 707
            IRKAIFQHSRTIRLPENVYT L KVL+AK+ YIQEGN  PS+E+LA+RVG++VEKL KLL
Sbjct: 378  IRKAIFQHSRTIRLPENVYTLLGKVLEAKKSYIQEGNQNPSREELARRVGMSVEKLGKLL 437

Query: 706  FTTRMPLSMQQRVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQI 527
            + TRMP+SMQQ VWADQDTTFQE+TADTGIEIPD+SVAKQLMR+HVRNLL  L +RERQI
Sbjct: 438  YCTRMPVSMQQTVWADQDTTFQEVTADTGIEIPDLSVAKQLMRQHVRNLLHTLEKRERQI 497

Query: 526  IRLRFGIEGGNHKSLSEIGNIYGLSKERVRQIESRALYKLRQCLGSHG 383
            IRLR+GIE G  +SL+EIG I+GLSKERVRQ+ESRA  KL++ LGS G
Sbjct: 498  IRLRYGIEDGKQRSLTEIGEIFGLSKERVRQLESRAFLKLKESLGSQG 545


>ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica] gi|743810385|ref|XP_011018729.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic isoform X1 [Populus euphratica]
            gi|743810387|ref|XP_011018730.1| PREDICTED: RNA
            polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica]
          Length = 570

 Score =  578 bits (1489), Expect = e-162
 Identities = 316/572 (55%), Positives = 384/572 (67%), Gaps = 16/572 (2%)
 Frame = -1

Query: 2050 MEAARXXXXXXXXXXPRTHFRNXXXXXXXXXXXSVLMFNEQIASTVSSVPAASMARRFST 1871
            MEA R           RTH +N            VL+  EQ    V+++P  S A+ F T
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLCSS-------VLILREQATPAVTAIPTTSTAQHFPT 53

Query: 1870 SVVSQEQGDEFKSLLRV---EKANQAMLDRRQVDTGNLVHEDK---------HFG----D 1739
            SV+ QEQ DEF+ L  +   ++ +QA LDRR+ + G   HE K         H G    +
Sbjct: 54   SVLLQEQRDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKDSDEIGTSGHEGKDSDE 113

Query: 1738 SNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMDVELCDXXXXXX 1559
             +Q++ +FE QL HW  +W+LLP  Q   N S S T         K +DVE  D      
Sbjct: 114  LDQMVENFEYQLHHWPTYWNLLPPSQKGQNPSMSFTTQSVTRSTDKLIDVEPTDVINLAK 173

Query: 1558 XXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRLLEXXXXXXXXXXX 1379
                                 D D+  S   ++F  ++ + VRS R L            
Sbjct: 174  RALSASKHAAFLADN----STDLDNLASTSSSSFSLEEVRIVRSRRHLARQSLNRRVPKT 229

Query: 1378 XVLFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQDLLKL 1199
              +  E + S+ ADV+KRL++GF+PNDPLRLFL GPE KQ+LT +EE +LI Q+QDL+ L
Sbjct: 230  KDMIFETYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNL 289

Query: 1198 EQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVHIAKQY 1019
            E VK R +SQFGREPTLVEWA+A GLSC++L+ QL SG R REKLI ANLRMVVHIAK+Y
Sbjct: 290  EGVKNRLESQFGREPTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRY 349

Query: 1018 QGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRTIRLPE 839
            Q RG+GLQDLLQEG+ GLMKS+EKFKPQ GCRFATYAYWWIRQ I KAIFQHSRTIRLPE
Sbjct: 350  QNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPE 409

Query: 838  NVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQRVWAD 659
            NVY  L KV++AKR YIQEGNH P+ E++A+RVGI ++KLEKLL  TR PLSMQQ VW+D
Sbjct: 410  NVYGLLGKVMEAKRSYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSD 469

Query: 658  QDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGNHKSLS 479
            Q+TTFQEITADT IEIPDVSVAKQLMRKH+R LL+IL  +ER+IIRLRFGIE G  KSLS
Sbjct: 470  QNTTFQEITADTEIEIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLS 529

Query: 478  EIGNIYGLSKERVRQIESRALYKLRQCLGSHG 383
            EIGN++GLSKERVRQ+ESRALYKL+QC+GSHG
Sbjct: 530  EIGNVFGLSKERVRQLESRALYKLKQCVGSHG 561


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  577 bits (1487), Expect = e-161
 Identities = 320/566 (56%), Positives = 395/566 (69%), Gaps = 10/566 (1%)
 Frame = -1

Query: 2050 MEAARXXXXXXXXXXPRTHFRNXXXXXXXXXXXSVLMFNEQIASTVSSVPAASMARRFST 1871
            MEAAR           RT  ++            VLMF+EQ A   +S+P  S+AR F T
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSS---VLMFHEQAAPAATSIPITSVARHFPT 57

Query: 1870 SVVSQEQGDEFKSL-----LRVEKANQAMLDRRQVDTGNLVHEDKHFGDSNQLLLDFERQ 1706
            SV+ QEQ D+++ L      + +KA     D++Q++ G  ++E+    +  QL   FE++
Sbjct: 58   SVLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQL--GFEKK 115

Query: 1705 LLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMDVELCDXXXXXXXXXXXXXXXXX 1526
            LL W     LL  L+++ N S++  +    A  K+ +DVE  +                 
Sbjct: 116  LLQWPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAAS 175

Query: 1525 XXXXXKIIEADSDDSHSLGMANFLG---DKEK--TVRSTRLLEXXXXXXXXXXXXVLFHE 1361
                 K+ + D   S+SLG AN      +KE+  TVRSTR LE             +  E
Sbjct: 176  LSEDLKL-DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVTI-RE 233

Query: 1360 NHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQDLLKLEQVKTR 1181
             ++SR  DVR++L+EGF+PNDPLRLFL GPE KQ+LT +EES+L  QVQ+L++LE+VK++
Sbjct: 234  TYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSK 293

Query: 1180 FQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVHIAKQYQGRGVG 1001
             QSQFGREPTLVEWAEA GL C+ LQ++L SG   R+KLIYANLRMVVHIAKQYQ RG+ 
Sbjct: 294  LQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLS 353

Query: 1000 LQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRTIRLPENVYTQL 821
            LQDLLQEGS GLMKSVE+FKPQVGCRFATYAYWWIRQ IRK+I QHSRT+RLPENV+T L
Sbjct: 354  LQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLL 413

Query: 820  AKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQRVWADQDTTFQ 641
            +KVLDAK+ YI+EGNH PSKE+LA+RVGITVEKL+KLLFTTRMPLSMQQ VW DQD TFQ
Sbjct: 414  SKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQ 473

Query: 640  EITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGNHKSLSEIGNIY 461
            E+T DTGIEIPDVSVAKQLMR+HVRNLLS+L  RER II+LRFGIE     SLSEIGN++
Sbjct: 474  EVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMF 533

Query: 460  GLSKERVRQIESRALYKLRQCLGSHG 383
            GLSKERVRQ+ESRALYKL+QCL  HG
Sbjct: 534  GLSKERVRQLESRALYKLKQCLNKHG 559


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  575 bits (1482), Expect = e-161
 Identities = 314/559 (56%), Positives = 379/559 (67%), Gaps = 3/559 (0%)
 Frame = -1

Query: 2050 MEAARXXXXXXXXXXPRTHFRNXXXXXXXXXXXSVLMFNEQIASTVSSVPAASMARRFST 1871
            MEA R           RTH +N            VL+  EQ    VSS+P  S A+ F T
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLTSS-------VLILREQATPAVSSIPTTSTAQHFPT 53

Query: 1870 SVVSQEQGDEFKSLLRV---EKANQAMLDRRQVDTGNLVHEDKHFGDSNQLLLDFERQLL 1700
            SV+ QEQ DEF+ L  +   ++A+QA LDRR+ + G   HE K   + +QL+ +FE QL 
Sbjct: 54   SVLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLH 113

Query: 1699 HWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMDVELCDXXXXXXXXXXXXXXXXXXX 1520
            HW  +W+L   L   V  +  + +      A KH    L D                   
Sbjct: 114  HWPAYWNLTDKL-IDVEPTNVINLAKRALSASKHAAF-LADN------------------ 153

Query: 1519 XXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRLLEXXXXXXXXXXXXVLFHENHTSRGA 1340
                    D D+  S   ++F  ++ K VRS R L              L  E + S+ A
Sbjct: 154  ------NTDLDNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSA 207

Query: 1339 DVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQDLLKLEQVKTRFQSQFGR 1160
            DV+KRL++GF+PNDPLRLFL GPE KQ+LT +EE +LI Q+QDL+ LE VK R +SQFGR
Sbjct: 208  DVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGR 267

Query: 1159 EPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVHIAKQYQGRGVGLQDLLQE 980
            EPTLVEWA+A GLSC +L+ QL SG R REKLI ANLRMVVHIAK+YQ RG+GLQDLLQE
Sbjct: 268  EPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQE 327

Query: 979  GSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRTIRLPENVYTQLAKVLDAK 800
            G+ GLMKS+EKFKPQ GCRFATYAYWWIRQ I KAIFQHSRTIRLPENVY  L KV++AK
Sbjct: 328  GTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAK 387

Query: 799  RLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQRVWADQDTTFQEITADTG 620
            R YIQEGNH P+ E++A+RVGI ++KLEKLL  TR PLSMQQ VW+DQ+TTFQEITADT 
Sbjct: 388  RSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTE 447

Query: 619  IEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGNHKSLSEIGNIYGLSKERV 440
            IEIPD+SVAKQLMRKH+R LL+IL  +ER+IIRLRFGIE G  KSLSEIGN++GLSKERV
Sbjct: 448  IEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERV 507

Query: 439  RQIESRALYKLRQCLGSHG 383
            RQ+ESRALYKL+QC+GSHG
Sbjct: 508  RQLESRALYKLKQCVGSHG 526


>gb|KDO48075.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 558

 Score =  575 bits (1481), Expect = e-161
 Identities = 299/514 (58%), Positives = 372/514 (72%), Gaps = 3/514 (0%)
 Frame = -1

Query: 1924 ASTVSSVPAASMARRFSTSVVSQEQGDEFKSLLRV---EKANQAMLDRRQVDTGNLVHED 1754
            +S+V+SVP +S+AR F TSV+ QEQ DE++ LL +   +K +QA  D R ++T     E+
Sbjct: 33   SSSVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEE 92

Query: 1753 KHFGDSNQLLLDFERQLLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMDVELCDX 1574
            K+ GD +QL+ D E Q LHW   W+L P ++   + S SLT+       ++ +D E  D 
Sbjct: 93   KNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDA 152

Query: 1573 XXXXXXXXXXXXXXXXXXXXXKIIEADSDDSHSLGMANFLGDKEKTVRSTRLLEXXXXXX 1394
                                 K+  A+  D        +  ++ K     R LE      
Sbjct: 153  VALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKR 212

Query: 1393 XXXXXXVLFHENHTSRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQ 1214
                  V  HE + SR A V+K+L+EGF+ NDPLRLFL GPE +++LT +EE +LI Q+Q
Sbjct: 213  KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 272

Query: 1213 DLLKLEQVKTRFQSQFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVH 1034
            DL++LE+ K++ QSQFGREPTL+EWA+A GLSC  L+S+L SG   REKLI ANLR+VVH
Sbjct: 273  DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 332

Query: 1033 IAKQYQGRGVGLQDLLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRT 854
            +AKQYQGRG+ L DLLQEGS GLMKSVEKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRT
Sbjct: 333  VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 392

Query: 853  IRLPENVYTQLAKVLDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQ 674
            IRLPEN+YT L+KVL+AKRLYIQEGNH P KEDLA+RVGITVEKLE+L+F TRMPLSMQQ
Sbjct: 393  IRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQ 452

Query: 673  RVWADQDTTFQEITADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGN 494
             VWADQDTTFQEITADTG+EIPD+SV KQLMR+HVRNLL++L  +ER I+RLRFGIE G 
Sbjct: 453  PVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGK 512

Query: 493  HKSLSEIGNIYGLSKERVRQIESRALYKLRQCLG 392
             KSLSE+GNI+GLSKERVRQ+ESRALY+L+Q LG
Sbjct: 513  PKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546