BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00002415
         (5767 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1949   0.0  
ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1936   0.0  
ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1930   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1928   0.0  
ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1927   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1923   0.0  
ref|XP_012076580.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1922   0.0  
ref|XP_008219491.1| PREDICTED: RNA-dependent RNA polymerase 6 [P...  1903   0.0  
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...  1897   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...  1889   0.0  
ref|XP_010101266.1| RNA-dependent RNA polymerase 6 [Morus notabi...  1883   0.0  
ref|XP_008394093.1| PREDICTED: RNA-dependent RNA polymerase 6 [M...  1878   0.0  
gb|KDO61726.1| hypothetical protein CISIN_1g041430mg [Citrus sin...  1877   0.0  
ref|XP_009355733.1| PREDICTED: RNA-dependent RNA polymerase 6 [P...  1875   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1875   0.0  
ref|XP_004291459.2| PREDICTED: RNA-dependent RNA polymerase 6 is...  1870   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1869   0.0  
ref|XP_011459183.1| PREDICTED: RNA-dependent RNA polymerase 6 is...  1868   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1818   0.0  
gb|KHG28504.1| RNA-dependent RNA polymerase 6 -like protein [Gos...  1817   0.0  

>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1949 bits (5050), Expect = 0.0
 Identities = 931/1199 (77%), Positives = 1060/1199 (88%), Gaps = 2/1199 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            M ++ + K+ VVTQVSLGGFD HV AKDL ++LE EIGLV+RCRLKTS TPPESYP++ I
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             D   I R +DY++VEPHAFVHFAL +SA   +DAA RCEL LN++ LK SLGPENP+ L
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            NQRRR TTP KLS V V+IGTLV+RD+FF+ WRGPP GVDFLVDPFDGTC+FCF+R+TAF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            SFK +  HAVIKCDFK+EFLVRDINE KQYT+TS LVLLLQL SAPR+WYRTADDDI+ S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            VP+D+LDDDDPWIRTTDFT SGAIGR +SYR+S+PPRHG KL+KA+ +L+ERRV  + LR
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
             P+RI+ EPDF MPM+DPFFCIH+KE I F+ +FLVNAV+HKGIFNQHQ+S+ FF+LLRN
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q  EVNVAALKHI  Y+RPVFDAY++LKV QEWLL++PK FK  K+LDDIAE+RRLVITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            T+AYCLPPEVELSNRVLR YK+VADRFLRVTFMDEG+QT+NSN L Y  A IVR ITS S
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
            FPQKT++F+R++SILT GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+NINV  +KSWMG
Sbjct: 481  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            +FTNKN+AKCAARMG CFSSTYA++EVP  +VN   PDIKRNGY FSDGIG ITPDLA E
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600

Query: 3728 VAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSW 3907
            VA+KLK + +PPCAYQIRYAG KGVVACW P   DG RLSLR SM+KFQSNHTILEICSW
Sbjct: 601  VAEKLKFDFDPPCAYQIRYAGCKGVVACW-PEQGDGIRLSLRSSMNKFQSNHTILEICSW 659

Query: 3908 TRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGN 4087
            TRFQPGFLNRQI+TLLSALNV D +FW MQE M+ KLNQML+D+D+AFDVLTASCAEQGN
Sbjct: 660  TRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGN 719

Query: 4088 VAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 4267
            VAAIMLSAGF PQKEPHLRGMLTC+RAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG
Sbjct: 720  VAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 779

Query: 4268 QCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDL 4447
            QCFIQVSN  LENCF KHGS+F+E   NL+V+KG VVIAKNPCLHPGD+RILEAVD P L
Sbjct: 780  QCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGL 839

Query: 4448 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQL 4627
            HHLYDCLVFPQKGERPH NEASGSDLDGDLYFVTWDENLIPPSK+SWIPMQYDAAE KQL
Sbjct: 840  HHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQL 899

Query: 4628 TRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPK 4807
            TRPV  +DI+EFF+KNM NENLG ICNAHVV ADLSE+GALDEKCL LA+LAATAVDFPK
Sbjct: 900  TRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPK 959

Query: 4808 TGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAY-DEDVTASSEINFLP 4984
            TGKIV+MP +LKPK+YPDFMGK+E+QSYKS KILG+LYR+IKDAY D+DV ASSE+NF+ 
Sbjct: 960  TGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVR 1019

Query: 4985 SDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSS 5164
             DIPYD+DLEV GA+DFI DAW++KCSYDGQLNGLL QYKV REEEVVTGH+WSMPK SS
Sbjct: 1020 GDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSS 1079

Query: 5165 RKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEW 5344
            RKQG+LKERLKHSY+ LK+EFRQ+FEKM+  F +L DDEKN++YE+KASAWYQVTYHP W
Sbjct: 1080 RKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHW 1139

Query: 5345 VKKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            ++KSL+LQ+ DG+  +VMLSFAWIAADYL RIKIR   +GNVD  KP+N+L KYL+DRM
Sbjct: 1140 IQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
          Length = 1195

 Score = 1936 bits (5016), Expect = 0.0
 Identities = 926/1199 (77%), Positives = 1056/1199 (88%), Gaps = 2/1199 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            M ++ + K+ VVTQVS+GGFD HV AKDL ++LE EIGLV+RCRLKTS TPPESYP++ I
Sbjct: 1    METEGSAKETVVTQVSIGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             D   I R +DY++VEPHAFVHFAL ESA W +DAA RCEL LN++ LK SLGPENP+ L
Sbjct: 61   ADLTKITRTEDYRRVEPHAFVHFALPESATWAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            NQRRR TTP KLSDV V+IGTLV+RD+FF+ WRGPP GVDFLVDPFDGTC+FCF+R+TAF
Sbjct: 121  NQRRRKTTPFKLSDVDVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            SFK +  HAVIKCDFK+EFLVRDINE KQY +TS LVLLLQL SAP +WYRTADDDI+ S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYKETSCLVLLLQLASAPWVWYRTADDDIEVS 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            VP+D+LDDDDPWIRTTDFT SGAIGR +SYR+S+PPRHG KL+KA+ +L+ERRV  + LR
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
             P+RI+ EPDF MPM+DPFFCIH+KE I F+ +FLVNAV+HKGIFNQHQ+S+ FF+LLRN
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q  EVNVAALKHI  Y+RPVFDAY++LKV QEWLL++PKLFK  K+LDDIAE+RRL+ITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVTQEWLLKNPKLFKNQKKLDDIAEIRRLIITP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            T+AYCLPPEVELSNRVLR YK+VADRFLRVTFMDEG+QT+NSN L Y  A IVR ITS S
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGVQTMNSNALNYFAAPIVRAITSYS 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
            FPQKT++F+R++SILT GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+NINV  +KSWMG
Sbjct: 481  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            +FTNKN+AKCAARMG CFSSTYA++EVP  +VN   PDIKRNGY FSDGIG ITPDLA E
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600

Query: 3728 VAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSW 3907
            VA+KLK + +PP AYQIRYAG KGVVACW P   DG RLSLR SM+KFQSNHTILEICSW
Sbjct: 601  VAEKLKFDFDPPSAYQIRYAGCKGVVACW-PEQGDGIRLSLRSSMNKFQSNHTILEICSW 659

Query: 3908 TRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGN 4087
            TRFQPGFLNRQI+TLLSALNV D +FW MQE M+ KLNQML+D+D+AFDVLTASCAE GN
Sbjct: 660  TRFQPGFLNRQIITLLSALNVPDAVFWKMQEIMVSKLNQMLVDSDVAFDVLTASCAELGN 719

Query: 4088 VAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 4267
            VAAIMLSAGF PQKEPHLRGML C+RAAQLWGLREKARIFVPSGRWLMGCLDEL VLEQG
Sbjct: 720  VAAIMLSAGFKPQKEPHLRGMLNCVRAAQLWGLREKARIFVPSGRWLMGCLDELAVLEQG 779

Query: 4268 QCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDL 4447
            QCFIQVSN  LENCF KHGS+F+E   NL+V+KG VVIAKNPCLHPGD+RILEAVD P L
Sbjct: 780  QCFIQVSNSYLENCFVKHGSKFSETKRNLQVVKGTVVIAKNPCLHPGDIRILEAVDDPGL 839

Query: 4448 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQL 4627
            HHLYDCLVFPQKGERPH NEASGSDLDGDLYFVTWDENLIPPSK+SWIPMQYDAAE KQL
Sbjct: 840  HHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQL 899

Query: 4628 TRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPK 4807
            TRPV  +DIIEFF+KNM NENLG ICNAHVV ADLSE+GALDEKCL LA+LAATAVDFPK
Sbjct: 900  TRPVNHQDIIEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPK 959

Query: 4808 TGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAY-DEDVTASSEINFLP 4984
            TGKIV+MP +LKPK+YPDFMGK+E+QSYKS KILG+LYR+IKDAY D+DV ASS++NF+P
Sbjct: 960  TGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSDLNFVP 1019

Query: 4985 SDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSS 5164
             D+PYD+DLEV GA+D+I DAW++KCSYDGQLNGLL QYKV REEEVVTGH+WSMPK SS
Sbjct: 1020 GDVPYDLDLEVLGATDYISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSS 1079

Query: 5165 RKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEW 5344
            R+QG+LKERLKHSY+ LK+EFRQ+FEKM+  F +L DDEKN++YE+KASAWYQVTYHP W
Sbjct: 1080 RQQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPRW 1139

Query: 5345 VKKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            ++KSL+LQ+ DG   A MLSFAWIAADYL RIKIR   +GNVD  KPIN+L KYL+DRM
Sbjct: 1140 IQKSLELQDSDG---AAMLSFAWIAADYLARIKIRHSRIGNVDSAKPINSLAKYLADRM 1195


>ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
            gi|643731347|gb|KDP38635.1| hypothetical protein
            JCGZ_03988 [Jatropha curcas]
          Length = 1198

 Score = 1930 bits (5000), Expect = 0.0
 Identities = 926/1199 (77%), Positives = 1052/1199 (87%), Gaps = 2/1199 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            MG++ +EK  VVTQVS GGF+ HV AKDL  +LE+ IG V+RCRLKTS TPPESYP++ I
Sbjct: 1    MGTERSEKDTVVTQVSFGGFENHVNAKDLVAYLEEVIGQVWRCRLKTSWTPPESYPNFKI 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             DTA I R ++YK+VEPHAFVHFALAESA W  +AAGRCEL LNDRPLKVSLGPENP+ L
Sbjct: 61   TDTAGIHRTNEYKRVEPHAFVHFALAESATWAKNAAGRCELFLNDRPLKVSLGPENPFTL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            NQRRR T P KLSDV ++IG +V+RD+F + WRGPP GVDFLVDPFDGTCKFCFTRDTAF
Sbjct: 121  NQRRRKTIPSKLSDVCIEIGMMVSRDEFLVGWRGPPSGVDFLVDPFDGTCKFCFTRDTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            S K +  HAVI+CDFK+EFLVRDINE KQY DTSYLV+LLQL SAP +WYRTADDDI+  
Sbjct: 181  SIKDTNKHAVIRCDFKLEFLVRDINEIKQYKDTSYLVILLQLASAPWVWYRTADDDIEVL 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            VP+++LDDDDPWIRTTDFTPSGAIGR NSYR+S+PPRHGAKL++AI+YL+ERRV  DSLR
Sbjct: 241  VPFNLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLERAINYLKERRVQVDSLR 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
             PL+I  EPD+ MPMSDPFFCIH KE I FE +FLVNAV+HKGIFNQHQ+SD FF+LLRN
Sbjct: 301  RPLKILNEPDYGMPMSDPFFCIHRKEGIAFEIVFLVNAVMHKGIFNQHQLSDDFFDLLRN 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q  ++NVAALKHI SYKRPVFDA+RRLK VQEWLL++PKLFK PK+LDDI ++RRL ITP
Sbjct: 361  QPADINVAALKHICSYKRPVFDAHRRLKAVQEWLLKNPKLFKCPKQLDDIVQIRRLAITP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            TRAYCLPPE+ELSNRVLR YK  ADRFLRVTFMDEG+QTIN+N LTY+VA IVR+ITS S
Sbjct: 421  TRAYCLPPEIELSNRVLRKYKNFADRFLRVTFMDEGLQTINANTLTYYVAPIVRDITSTS 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
            F QKT++F+R+KSILT+GFYLCGR+YSFLAFSSNQLRDRSAWFFAED  I V +++ WMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDGKIRVDQIRKWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            +FTNKN+AKCAARMG CFSSTYA+VEVPS +VN   PDI+RNGYTFSDGIG ITPDLA  
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATVEVPSAEVNLAHPDIERNGYTFSDGIGMITPDLAKA 600

Query: 3728 VAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSW 3907
            VA+KLKL+ NPPCAYQIRYAG KGVVACW P   DG RLSLRPSM+KFQSNHT LEICSW
Sbjct: 601  VAEKLKLDINPPCAYQIRYAGCKGVVACW-PAQGDGIRLSLRPSMNKFQSNHTTLEICSW 659

Query: 3908 TRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGN 4087
            TRFQPGFLNRQI+TLLS LNVSDEIFW MQ  M+ KLN+ML D D+AFDV+TASC EQGN
Sbjct: 660  TRFQPGFLNRQIITLLSTLNVSDEIFWKMQIAMVSKLNKMLTDADVAFDVITASCTEQGN 719

Query: 4088 VAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 4267
             AA+MLSAGF PQ EPHLRGMLTCIRAAQ   LREKARIFV SGRWLMGCLDELGVLEQG
Sbjct: 720  TAALMLSAGFKPQNEPHLRGMLTCIRAAQFCDLREKARIFVSSGRWLMGCLDELGVLEQG 779

Query: 4268 QCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDL 4447
            QCFIQVSNPSLE CFSKHGSRF+E   NL+VI G VVIAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSNPSLETCFSKHGSRFSETKKNLQVITGTVVIAKNPCLHPGDVRILEAVDAPGL 839

Query: 4448 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQL 4627
             HL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIPPSK+SW PMQYDAAE K L
Sbjct: 840  CHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKQSWTPMQYDAAEPKLL 899

Query: 4628 TRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPK 4807
            +RPV+ +DII+FF+KNMVNE+LG ICNAHVV ADLSE+GALDE C+KLA+LAATAVDFPK
Sbjct: 900  SRPVSHQDIIDFFAKNMVNESLGAICNAHVVRADLSEYGALDENCIKLAELAATAVDFPK 959

Query: 4808 TGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAY-DEDVTASSEINFLP 4984
            TGK+VT+P  LKPK+YPDFMGK+EYQSYKS KILG+LYR IKDAY D+D  ASSE+N   
Sbjct: 960  TGKLVTLPQYLKPKMYPDFMGKEEYQSYKSTKILGRLYRDIKDAYGDDDAAASSELNCSS 1019

Query: 4985 SDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSS 5164
             DIPYD +LEV G++D+I++AW+QKCSYDGQL GLLGQYKV +EEE+VTGHIWSMP Y+S
Sbjct: 1020 GDIPYDTNLEVLGSADYILEAWDQKCSYDGQLKGLLGQYKVKKEEELVTGHIWSMPMYNS 1079

Query: 5165 RKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEW 5344
            RK GELKERLKHSYSALKKEFRQ+FEKM+  FE+L+DDEKN++YE+KASAWYQVTYHP+W
Sbjct: 1080 RKLGELKERLKHSYSALKKEFRQVFEKMDLDFEQLTDDEKNLLYERKASAWYQVTYHPKW 1139

Query: 5345 VKKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            +KKSL+LQEPD + +A +LSFAWIAADYL RIKI+ RG   VD  KP+N+L KYL+DR+
Sbjct: 1140 IKKSLELQEPDAAGNATILSFAWIAADYLARIKIKHRGTEGVDTAKPVNSLVKYLADRI 1198


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1928 bits (4995), Expect = 0.0
 Identities = 921/1201 (76%), Positives = 1057/1201 (88%), Gaps = 4/1201 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            M ++ + K+ VVTQVS+GGFD HV AKDL ++L+  IGLV+RCRLKTS TPPESYP++ I
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             D   IER +DY++V PHAFVHFAL +SA   ++A+GRCEL LN++ LKVSLGP+NP+ L
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            NQRRRTTTP KLSDV  +IG LV+RD+FF+ WRGPP GVDFLVDPFDGTCKFCF+R+TAF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            S K +  HAVIKCDFK+EFLVRDINE  QYT+TS LVLLLQL SAP +WYRTADDDI+  
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVH---HD 2818
            VP+D+LDDDDPWIRTTDFT SGAIGR +SYR+S+PPRHG+KL+KA+ YL+ERRV     +
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 2819 SLRWPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNL 2998
            + R  +RI  EPDF MPMSDPFFCIH+KE I FE +FLVNAV+HKGIFNQHQ+S+ FF+L
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 2999 LRNQMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLV 3178
            LRNQ  EVNV+ALKHI +Y+RPVF+AYRRLK VQEWLL++P LFK PK+L D+ E+RRLV
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 3179 ITPTRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREIT 3358
            ITPT+AYCLPPEVELSNRVLR YK+VADRFLRVTFMDEG+Q +NSNVL Y+VA IVR+IT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 3359 SNSFPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKS 3538
            SNSFPQKT++F+R++SILT GFYLCGR+YSFLAFS+NQLRD+SAWFF+E++NI+V  VKS
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 3539 WMGRFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDL 3718
            WMG+FTN+N+AKCAARMG CFSSTYA++EVP  +VN   PDI+RNGY FSDGIG ITPDL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 3719 ALEVAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEI 3898
            A EVA+KLKL+ +PPCAYQIRYAG KGVVACW P   DG RLSLRPSM+KFQSNHT LEI
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACW-PGKGDGVRLSLRPSMNKFQSNHTTLEI 659

Query: 3899 CSWTRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAE 4078
            CSWTRFQPGFLNRQI+TLLS LNV D +FW MQETM+ KLNQM +++D+AFDVLTASCA+
Sbjct: 660  CSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCAD 719

Query: 4079 QGNVAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVL 4258
            QGNVAAIMLSAGF P +EPHLRGMLTC+RAAQLW LREK RIFVPSGRWLMGCLDELG+L
Sbjct: 720  QGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGML 779

Query: 4259 EQGQCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDV 4438
            EQGQCFIQVSN SLE CF KHG++F+E   NL+VIKG VVIAKNPCLHPGDVR+LEAVDV
Sbjct: 780  EQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDV 839

Query: 4439 PDLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAET 4618
            P LHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSK+SWIPMQYDAAE 
Sbjct: 840  PGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEA 899

Query: 4619 KQLTRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVD 4798
            K L RPV  +DIIEFF+KNMVN+NLG ICNAHVVHADLSE+GA D+ CL LA+LAATAVD
Sbjct: 900  KLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVD 959

Query: 4799 FPKTGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINF 4978
            FPKTGK+V+MP  LKPK+YPDFMGK+EYQSYKS KILG+LYR+IKDAYDEDV ASSE+N 
Sbjct: 960  FPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNL 1019

Query: 4979 LPSDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKY 5158
            +P DIPYD DLEV GASD+I DAW+QKCSYDGQLNGLL QYKV REEEVVTGHIWSMPKY
Sbjct: 1020 VPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKY 1079

Query: 5159 SSRKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHP 5338
            SSRKQGELK+RLKHSY++LKKEFRQIFEKM+ +FE+L D EKN +YEQKASAWYQV YHP
Sbjct: 1080 SSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHP 1139

Query: 5339 EWVKKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDR 5518
             WVKKSL+LQ+PDG+  +VMLSFAWIAADYL RIKIR R  GNVD  KP+N+L KYL+DR
Sbjct: 1140 HWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADR 1199

Query: 5519 M 5521
            M
Sbjct: 1200 M 1200


>ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
          Length = 1200

 Score = 1927 bits (4991), Expect = 0.0
 Identities = 919/1201 (76%), Positives = 1058/1201 (88%), Gaps = 4/1201 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            M ++ + K+ VVTQVS+GGF  HV AKDLS++L+  IGLV+RCRLKTS TPPESYP++ I
Sbjct: 1    MEAEGSAKETVVTQVSVGGFGIHVTAKDLSEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             D   IER +DY++V PHAFVHFAL +SA W ++A+ RCEL LND+ LKVSLGP+NP+ L
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATWAMNASERCELFLNDKALKVSLGPKNPFTL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            NQ+RRTTTP KLSDV  +IG+LV+ D+FF+ WRGPP GVDFLVDPFDGTC+FCF+R+TAF
Sbjct: 121  NQQRRTTTPFKLSDVGFEIGSLVSHDEFFVGWRGPPSGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            S K +  HAVIKC FK+EFLVRDINE  QYT+TS LVLLLQL SAP +WYRTADDDI+  
Sbjct: 181  SLKSTSEHAVIKCAFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVH---HD 2818
            VP+D+LDDDDPWIRTTDFT SGAIGR +SYR+S+PPRHG+KL+KA+ YL+ERRV     +
Sbjct: 241  VPFDLLDDDDPWIRTTDFTGSGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVEVLQEE 300

Query: 2819 SLRWPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNL 2998
            + R  +RI  EPDF MPMSDPFFCIH+KE I F+ +FLVNAV+HKGIFNQHQ+S+ FF+L
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 2999 LRNQMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLV 3178
            LRNQ  EVNV+ALKHI +Y+RPVF+AY+RLK VQEWLL++P LFK PK+L DI E+RRLV
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYKRLKAVQEWLLKNPNLFKNPKQLGDIVEIRRLV 420

Query: 3179 ITPTRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREIT 3358
            ITPT+AYCLPPEVELSNRVLR YK+VADRFLRVTFMDEG+Q +NSNVL Y+VA IVR+IT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 3359 SNSFPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKS 3538
            SNSF QKT++F+R++SILT GFYLCGR+YSFLAFS+NQLRD+SAWFFAE++N++V  +KS
Sbjct: 481  SNSFHQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFAEERNVSVLDIKS 540

Query: 3539 WMGRFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDL 3718
            WMG+FTN+N+AKCAARMG CFSSTYA++EVP  +VN   PDI+RNGY FSDGIG ITPDL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNFDLPDIERNGYVFSDGIGIITPDL 600

Query: 3719 ALEVAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEI 3898
            A EVA+KLKL+ +PPCAYQIRYAG KGVVACW P   DG  LSLRPSM+KFQSNHT LEI
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACW-PGKGDGVHLSLRPSMNKFQSNHTTLEI 659

Query: 3899 CSWTRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAE 4078
            CSWTRFQPGFLNRQI+TLLS LNV D +FW MQETM+ KLNQM +++D+AFDVLTASCA+
Sbjct: 660  CSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCAD 719

Query: 4079 QGNVAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVL 4258
            QGNVAAIMLSAGF PQKEPHLRGMLTC+RAAQLWGLREKARIFVPSGRWLMGCLDELG+L
Sbjct: 720  QGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGML 779

Query: 4259 EQGQCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDV 4438
            EQGQCFIQVSN SLE CF KHG++F+E   NL+V+KG VVIAKNPCLHPGDVR+LEAVDV
Sbjct: 780  EQGQCFIQVSNSSLEKCFIKHGAKFSEAKKNLQVVKGTVVIAKNPCLHPGDVRVLEAVDV 839

Query: 4439 PDLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAET 4618
            P LHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSK+SWIPMQYDAAE 
Sbjct: 840  PGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEA 899

Query: 4619 KQLTRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVD 4798
            K L RPV  +DIIEFF+KNMVNENLG ICNAHVVHADLSEHGA+DEKCL LA+LAATAVD
Sbjct: 900  KLLARPVNHQDIIEFFAKNMVNENLGAICNAHVVHADLSEHGAMDEKCLTLAELAATAVD 959

Query: 4799 FPKTGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINF 4978
            FPKTGK+VTMP  LKPK+YPDFMGK+EYQSYKS KILG+LYR+IKDAYDEDV ASSE+N 
Sbjct: 960  FPKTGKVVTMPSYLKPKVYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNP 1019

Query: 4979 LPSDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKY 5158
            +P DIPYD DLEV GASD+I DAW+QKCSYDGQLNGLL QYKV REEE+VTGHIWSMPKY
Sbjct: 1020 VPGDIPYDSDLEVVGASDYINDAWDQKCSYDGQLNGLLSQYKVKREEELVTGHIWSMPKY 1079

Query: 5159 SSRKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHP 5338
            SSRKQGELK+RLKHSY++LKKEFRQIFEKM+ +FE+L D EKN +YEQKASAWYQV YHP
Sbjct: 1080 SSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVAYHP 1139

Query: 5339 EWVKKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDR 5518
             WVKKSL+LQ+PDG+  +VMLSF WIAADYL RIKIR R  GNVD  KP+N+L KYL+DR
Sbjct: 1140 HWVKKSLELQDPDGAGTSVMLSFGWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADR 1199

Query: 5519 M 5521
            +
Sbjct: 1200 I 1200


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1923 bits (4982), Expect = 0.0
 Identities = 912/1204 (75%), Positives = 1049/1204 (87%), Gaps = 7/1204 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            M +K  EK+ VVTQVS GGFD+ V A+DL  +L++EIG V+RCRLKTS TPPESYP++ I
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             DTA I+R D Y++VEPHAFVHFA  +SA W  +AAG CEL  N RP+KVSLGPENP+ L
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            NQRRRTT P KLSDV V+IGTLV+RD+F + WRGPP GVDFLVDPFDG CKFCFTRDTAF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            SFKG+  HAVI+CDFK+EFLVRDINE KQYTDTS LV+LLQL SAP +WYRTADDDI+  
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            VP+D+LDDDDPWIRTTDFTPSGAIGR NSYR+S+PPRHGAKLK+A+++LRERRV  D LR
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
             PL +  EP+++MPMSDPFFCIH++E +DF  MFLVNAV+HKGIFNQHQ+SD FF+LLRN
Sbjct: 301  RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q  +VN+AAL+HI SYK PVFDA++RLK VQ+WLL++PKLF+  K+LDDI E+RRL ITP
Sbjct: 361  QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            TRAYCLPPEVELSNRVLR YK++AD+FLRVTFMDEG+QT+N+N LTY+ A IVR+ITSNS
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
            F QKT++F+R+KSILT+GFYLCGRKYSFLAFSSNQLRDRSAWFFAED   +V K+++WMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            +FTN+N+AKCAARMG CFSSTYA+VEVPS +     PDI+RN Y FSDGIG ITPDLA E
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600

Query: 3728 VAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSW 3907
            VA+KLKLE NPPCAYQIRYAG KGVVACW P   DG RLSLR SM+KF SNHT LEICSW
Sbjct: 601  VAEKLKLEVNPPCAYQIRYAGCKGVVACW-PAHIDGIRLSLRVSMNKFHSNHTTLEICSW 659

Query: 3908 TRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGN 4087
            TRFQPGFLNRQI+TLLS L+V DEIFW MQ  M+ KLNQM +D D+AFDV+TASCAEQGN
Sbjct: 660  TRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGN 719

Query: 4088 VAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 4267
             AAIMLSAGF+P+ EPHL GMLTCIRAAQLWGLREK RIFVPSGRWLMGCLDELGVLE G
Sbjct: 720  TAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHG 779

Query: 4268 QCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDL 4447
            QCFIQVSNPSLE+CF KHGSRF+E    L+V+KG VV+AKNPCLHPGD+RILEAVD P+L
Sbjct: 780  QCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPEL 839

Query: 4448 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQL 4627
            HHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIPPSK+SW+PMQYDAAE KQL
Sbjct: 840  HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQL 899

Query: 4628 TRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPK 4807
             RPV  +DII+FF+KNMVNENLG ICNAHVVHADLSE+GALDE C+KLA+LAATAVDFPK
Sbjct: 900  NRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPK 959

Query: 4808 TGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAY------DEDVTASSE 4969
            TGK+VTMP +LKPKLYPDFMGK++YQSY SNKILG+LYR++KD Y      D+D   SSE
Sbjct: 960  TGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSE 1019

Query: 4970 INFLPSDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSM 5149
            +N +  DIPYD DLEVSG+SD+I+DAW+QKCSYDGQL GLL QYKV REEEVVTGHIWSM
Sbjct: 1020 LNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSM 1079

Query: 5150 PKYSSRKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVT 5329
            PK +SRKQGELKERLK SY +LKKEFRQ+FEKM+  FE+L++DEKN++YEQKASAWYQV 
Sbjct: 1080 PKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVA 1139

Query: 5330 YHPEWVKKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYL 5509
            YHP+WV KS++LQEPD +  A MLSFAWIAADYL RIKIRCRG   VD  KP+N+L KYL
Sbjct: 1140 YHPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYL 1199

Query: 5510 SDRM 5521
            +DR+
Sbjct: 1200 ADRI 1203


>ref|XP_012076580.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
            gi|643724398|gb|KDP33599.1| hypothetical protein
            JCGZ_07170 [Jatropha curcas]
          Length = 1199

 Score = 1922 bits (4979), Expect = 0.0
 Identities = 919/1199 (76%), Positives = 1045/1199 (87%), Gaps = 2/1199 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            M ++++EK  VVTQVS GGFD HV+AKDL  +LE+EIG V+RCRLKTS TPPESYP++ I
Sbjct: 1    METQKSEKDTVVTQVSFGGFDNHVKAKDLVAYLEEEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             D AAI R  +YK+VEPHAFVHFA AESA W  +AAG CEL LNDRPLKVSLGPENP+ L
Sbjct: 61   TDAAAIHRTHEYKRVEPHAFVHFASAESATWAKNAAGHCELFLNDRPLKVSLGPENPFHL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            NQRRR   P KLSDV ++IGTLV+RD+F + WRGP  GVDFLVDPFDGTCKFCFT DTAF
Sbjct: 121  NQRRRKNIPFKLSDVCIEIGTLVSRDEFLVGWRGPSSGVDFLVDPFDGTCKFCFTMDTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            S K +  HA+I+CDFK+EFLVRDINE KQYTDTS +V+LLQL SAP +WYRTADDDI+ S
Sbjct: 181  SIKDTTKHAIIRCDFKLEFLVRDINEVKQYTDTSCIVILLQLASAPLVWYRTADDDIEVS 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            VP+D+LDDDDPWIRTTDFTPSGAIGR N YR+S+PPRHGAKLK+A ++L+ERRV  DSLR
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRVSIPPRHGAKLKRARNFLKERRVQEDSLR 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
             PL+I  EPD+ MPMSDPFFCIH+KE I FE MFLVNAV+HKGIFNQHQ+SD FF+LLRN
Sbjct: 301  RPLKIVNEPDYGMPMSDPFFCIHHKEGIAFEIMFLVNAVMHKGIFNQHQLSDNFFDLLRN 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q  ++NVAALKHI SYK+PVFDA++ LK VQEWLL++PKLFK+ K+LDDI E+RRL +TP
Sbjct: 361  QSLDINVAALKHICSYKQPVFDAHKGLKAVQEWLLKNPKLFKRSKQLDDIVEIRRLALTP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            TRAYCLPPEVELSNRVLR YK +ADRFLRVTFMDEG+QTIN+N LTY+VA IVR+ITS S
Sbjct: 421  TRAYCLPPEVELSNRVLRKYKNIADRFLRVTFMDEGLQTINANTLTYYVAPIVRDITSTS 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
            F QKT++F+R+KSILT+GF LCGR+YSFLAFSSNQLRDRSAWFFAED  I+V +++ WMG
Sbjct: 481  FSQKTRIFRRVKSILTDGFNLCGRRYSFLAFSSNQLRDRSAWFFAEDGKISVGQIRKWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            RFTN+N+AKCAARMG CFSSTYA+VEVPS++VN   PDI+RNGY FSDGIG ITPDLA E
Sbjct: 541  RFTNRNIAKCAARMGQCFSSTYATVEVPSSEVNHALPDIERNGYIFSDGIGTITPDLAKE 600

Query: 3728 VAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSW 3907
            VA+KLKL+ N PCAYQIRYAG KGVVACW P   DG RLSLRPSM+KFQSNHT LEICSW
Sbjct: 601  VAEKLKLDINLPCAYQIRYAGCKGVVACW-PAQGDGIRLSLRPSMNKFQSNHTTLEICSW 659

Query: 3908 TRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGN 4087
            TRFQPGFLNRQI+TLLS LNVSDE+FW MQ  M+ KLN+ML D D+AFDV+T SCAEQGN
Sbjct: 660  TRFQPGFLNRQIITLLSTLNVSDEVFWEMQTAMVSKLNKMLTDADVAFDVITKSCAEQGN 719

Query: 4088 VAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 4267
             AAIMLSAGF PQ EPHLRGMLTCIRAAQ WGLREKARIFV SGRWLMGCLDELGVLEQG
Sbjct: 720  TAAIMLSAGFKPQNEPHLRGMLTCIRAAQFWGLREKARIFVTSGRWLMGCLDELGVLEQG 779

Query: 4268 QCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDL 4447
            QCFIQVSNP LE CFSKHGS+F+E   NL+VIKG VVIAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSNPCLETCFSKHGSKFSETKKNLQVIKGTVVIAKNPCLHPGDVRILEAVDAPGL 839

Query: 4448 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQL 4627
            HHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWD+NLIPPSKKSW PMQYDAAE K L
Sbjct: 840  HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKKSWTPMQYDAAEAKLL 899

Query: 4628 TRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPK 4807
             RPV+ +DII+FF+KNMVNENLG ICNAHVVHADLSEHGALDE C+KLA+LAATAVDFPK
Sbjct: 900  NRPVSHQDIIDFFAKNMVNENLGAICNAHVVHADLSEHGALDENCIKLAELAATAVDFPK 959

Query: 4808 TGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAY-DEDVTASSEINFLP 4984
            TGK+VTMP  LKPK+YPDFMGK+EYQSYKS KILG+LYR+I DAY D+D  A SE+N L 
Sbjct: 960  TGKLVTMPPYLKPKMYPDFMGKEEYQSYKSTKILGRLYRQIIDAYGDDDAAAFSELNCLS 1019

Query: 4985 SDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSS 5164
             DIPYD DLEV G++D+I++AW+QKCSYDGQL GLLGQYKV REEE+VTGHIWSMP  +S
Sbjct: 1020 GDIPYDADLEVLGSADYILEAWDQKCSYDGQLKGLLGQYKVKREEELVTGHIWSMPMSNS 1079

Query: 5165 RKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEW 5344
            RKQG+LKERLKHSYSALKKEFRQ+FE M    E+L+DDEKN+ YE+KASAWYQV YHP+W
Sbjct: 1080 RKQGDLKERLKHSYSALKKEFRQVFEGMNLDVEQLTDDEKNLQYERKASAWYQVAYHPKW 1139

Query: 5345 VKKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            +KKSL+LQE D   +A MLSF+WIAADYL RIKI+ RG   +D  KP+N+L KYL+DR+
Sbjct: 1140 IKKSLELQESDAPGNATMLSFSWIAADYLARIKIKRRGTEGIDTAKPVNSLVKYLTDRI 1198


>ref|XP_008219491.1| PREDICTED: RNA-dependent RNA polymerase 6 [Prunus mume]
          Length = 1196

 Score = 1903 bits (4929), Expect = 0.0
 Identities = 910/1193 (76%), Positives = 1044/1193 (87%), Gaps = 1/1193 (0%)
 Frame = +2

Query: 1946 NEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTIDTAAI 2125
            +E   VVTQVS GGF  HVRAKDL  +LEDEIG+VYRCRLKTS TPPES+P++ I+TA +
Sbjct: 6    SENGSVVTQVSFGGFQHHVRAKDLVTYLEDEIGVVYRCRLKTSWTPPESFPNFEINTADV 65

Query: 2126 ERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRLNQRRRT 2305
            +R DDY +VEPHAFVHF   +S  + +DAAGRCEL LN+ PLKVS+G ENPY LN+RRRT
Sbjct: 66   KRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFLNNEPLKVSMGLENPYFLNRRRRT 125

Query: 2306 TTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAFSFKGSL 2485
             TP KLSDV V+IG+LV +D+FF++WRGPPYGVDF+VDPFDGTCKFCFT DTAFSFKG+ 
Sbjct: 126  KTPFKLSDVHVEIGSLVRQDEFFVSWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTK 185

Query: 2486 NHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDSVPYDML 2665
             HAVIKCDFK+EFLVR+I E KQYTDTSYLV+LL+L S+P + YRTADDDID SVP+D+L
Sbjct: 186  KHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLL 245

Query: 2666 DDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLRWPLRIQ 2845
            DDDDPWIRTTDFTPSGAIGR NSYR+ +PPRHGAKLKKA++YLRERRV    ++WP RIQ
Sbjct: 246  DDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPRIQ 305

Query: 2846 KEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRNQMKEVN 3025
             EPDF M  ++PFF I Y+EDI FE MFLVNAV+HKG  NQHQ+SD FF+LLR+Q KE+N
Sbjct: 306  DEPDFGMSNTEPFFSIQYEEDISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEIN 365

Query: 3026 VAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITPTRAYCL 3205
            VAALKH+ SY+ PVFDA  RLKVVQ+WLL++PKL K PKRLDDI EVRRLVITPT+AYCL
Sbjct: 366  VAALKHLCSYRNPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIVEVRRLVITPTKAYCL 425

Query: 3206 PPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNSFPQKTK 3385
            PPEVELSNRVLR YKEVADRFLRVTFMDEGMQ INSNVL Y+VA IV+EITSNSF QKT 
Sbjct: 426  PPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTN 485

Query: 3386 VFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMGRFTNKN 3565
            VF+R ++IL +GFYLCGRKY+FLAFSSNQLRDRSAWFFAE  NI+V K+ SWMG+F NKN
Sbjct: 486  VFKRFRNILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGKFNNKN 545

Query: 3566 VAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALEVAQKLK 3745
            VAKCAARMG CFSSTYA+VEVPS++VN   PDI+RNGY FSDGIG ITPDLALEVA+KLK
Sbjct: 546  VAKCAARMGQCFSSTYATVEVPSSEVN-DIPDIERNGYIFSDGIGMITPDLALEVAEKLK 604

Query: 3746 LERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSWTRFQPG 3925
            L+RNPPCAYQIR+AG KGVVACW P+  D  RLSLR SM+KF+S H  LEICSWTR+QPG
Sbjct: 605  LDRNPPCAYQIRFAGCKGVVACW-PSKGDRFRLSLRTSMNKFESKHATLEICSWTRYQPG 663

Query: 3926 FLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGNVAAIML 4105
            FLNRQI+TLLS L V DEIFW MQE M+ KLNQML+DTD+AFDVLT+SCAEQGN AAIML
Sbjct: 664  FLNRQIITLLSTLKVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTSSCAEQGNAAAIML 723

Query: 4106 SAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQV 4285
            SAGF PQ EPHLRGMLTCI+AAQLWGLREKARIFV SGRWLMG LDELGVLEQGQCF+QV
Sbjct: 724  SAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQV 783

Query: 4286 SNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDLHHLYDC 4465
            S PSLE+CF+KHGS F +   NL+VIKG+VVIAKNPCLHPGD+RILEAVD P LHHLYDC
Sbjct: 784  STPSLESCFAKHGSSFAQIERNLQVIKGYVVIAKNPCLHPGDIRILEAVDAPGLHHLYDC 843

Query: 4466 LVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQLTRPVTQ 4645
            LVFPQKG+RPHT+EASGSDLDGDLYFVTWDENLIPPSKKSW+PMQYD AE K+  RPVTQ
Sbjct: 844  LVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKRQGRPVTQ 903

Query: 4646 EDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPKTGKIVT 4825
            +DII+FF KNM NENLG ICNAHVVHAD S++GALDE CLKLA+LAA AVDFPKTGKIVT
Sbjct: 904  QDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDENCLKLAELAALAVDFPKTGKIVT 963

Query: 4826 MPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLPSDIPYDI 5005
            +P +LKP+LYPDF+GK++ QSYKS KILG+LYRK++DAYDED   +SE++++PSDIPYD+
Sbjct: 964  LPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATTSELHYVPSDIPYDM 1023

Query: 5006 DLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSRKQGELK 5185
            DLEV GA+DFI DAWE+KCSYDGQL GL+GQYKV REEE+VTGH+WS+PK +S+KQGELK
Sbjct: 1024 DLEVPGAADFIFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELK 1083

Query: 5186 ERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEWVKKSLDL 5365
            ERL HSY+ALKKEFRQ+FE ++   E L+DDEKNI+ E+KASAWYQVTYHP+WVK+S  L
Sbjct: 1084 ERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNILCEKKASAWYQVTYHPKWVKQSPPL 1143

Query: 5366 QEPDGSRD-AVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            QEPDG  D  VMLSFAWIAADYL RIKI+CRGV ++D  KPIN+L +YL+DR+
Sbjct: 1144 QEPDGPGDVVVMLSFAWIAADYLARIKIKCRGVEHIDSTKPINSLKRYLADRI 1196


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1897 bits (4914), Expect = 0.0
 Identities = 909/1193 (76%), Positives = 1038/1193 (87%), Gaps = 1/1193 (0%)
 Frame = +2

Query: 1946 NEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTIDTAAI 2125
            +E   VVTQVS GGF  H RAKDL  +LEDEIGLVYRCRLKTS TPPES+P++ I+TA +
Sbjct: 6    SENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEINTADV 65

Query: 2126 ERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRLNQRRRT 2305
            +R DDY +VEPHAFVHF   +S  + +DAAGRCEL  N+ PLKVSLGPENPY LN+RRRT
Sbjct: 66   KRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRRRRT 125

Query: 2306 TTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAFSFKGSL 2485
             TP KLSDV V+IG+LV +D+FF +WRGPPYGVDF+VDPFDGTCKFCFT DTAFSFKG+ 
Sbjct: 126  KTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTK 185

Query: 2486 NHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDSVPYDML 2665
             HAVIKCDFK+EFLVR+I E KQYTDTSYLV+LL+L S+P + YRTADDDID SVP+D+L
Sbjct: 186  KHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLL 245

Query: 2666 DDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLRWPLRIQ 2845
            DDDDPWIRTTDFTPSGAIGR NSYR+ +PPRHGAKLKKA++YLRERRV    ++WP +IQ
Sbjct: 246  DDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPKIQ 305

Query: 2846 KEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRNQMKEVN 3025
             EPDF M  ++PFF I Y+E I FE MFLVNAV+HKG  NQHQ+SD FF+LLR+Q KE+N
Sbjct: 306  DEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEIN 365

Query: 3026 VAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITPTRAYCL 3205
            VAALKH+ SY+ PVFDA  RLKVVQ+WLL++PKL K PKRLDDIAEVRRLVITPT+AYCL
Sbjct: 366  VAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCL 425

Query: 3206 PPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNSFPQKTK 3385
            PPEVELSNRVLR YKEVADRFLRVTFMDEGMQ INSNVL Y+VA IV+EITSNSF QKT 
Sbjct: 426  PPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTN 485

Query: 3386 VFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMGRFTNKN 3565
            VF+R ++IL +GFYLCGRKY+FLAFSSNQLRDRSAWFFAE  NI+V K+ SWMG+F NKN
Sbjct: 486  VFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGKFNNKN 545

Query: 3566 VAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALEVAQKLK 3745
            VAKCAARMG CFSSTYA+VEV S++VN   PDIKRNGY FSDGIG ITPDLALEVA+KLK
Sbjct: 546  VAKCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMITPDLALEVAEKLK 604

Query: 3746 LERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSWTRFQPG 3925
            L+RNPPCAYQIR+AG KGVVACW P+  DG RLSLR SM+KF+S HT LEICSWTR+QPG
Sbjct: 605  LDRNPPCAYQIRFAGCKGVVACW-PSKGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPG 663

Query: 3926 FLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGNVAAIML 4105
            FLNRQI+TLLS LNV DEIFW MQE M+ KLNQML+DTD+AFDVLTASCAEQGN AAIML
Sbjct: 664  FLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAAAIML 723

Query: 4106 SAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQV 4285
            SAGF PQ EPHLRGMLTCI+AAQLWGLREKARIFV SGRWLMG LDELGVLEQGQCF+QV
Sbjct: 724  SAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQV 783

Query: 4286 SNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDLHHLYDC 4465
            S P LE+CF+KHGS F +   NL+VIKG VVIAKNPCLHPGD+RILEAVD P LHHLYDC
Sbjct: 784  STPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHLYDC 843

Query: 4466 LVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQLTRPVTQ 4645
            LVFPQKG+RPHT+EASGSDLDGDLYFVTWDENLIPPSKKSW+PMQYD AE K   RPVTQ
Sbjct: 844  LVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGRPVTQ 903

Query: 4646 EDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPKTGKIVT 4825
            +DII+FF KNM NENLG ICNAHVVHAD S++GALD  CLKLA+LAA AVDFPKTGKIV+
Sbjct: 904  QDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTGKIVS 963

Query: 4826 MPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLPSDIPYDI 5005
            +P +LKP+LYPDF+GK++ QSYKS KILG+LYRK++DAYDED   SSE+++ PSDIPYD+
Sbjct: 964  LPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDIPYDM 1023

Query: 5006 DLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSRKQGELK 5185
            DLEV GA+DF+ DAWE+KCSYDGQL GL+GQYKV REEE+VTGH+WS+PK +S+KQGELK
Sbjct: 1024 DLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELK 1083

Query: 5186 ERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEWVKKSLDL 5365
            ERL HSY+ALKKEFRQ+FE ++   E L+DDEKN++ E+KASAWYQVTYHP+WVK+S  L
Sbjct: 1084 ERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQSPPL 1143

Query: 5366 QEPDGSRD-AVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            QEPDG  D  VMLSFAWIAADYL RIKI+C GV ++D  KPIN+L +YL+DR+
Sbjct: 1144 QEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score = 1889 bits (4893), Expect = 0.0
 Identities = 903/1198 (75%), Positives = 1044/1198 (87%), Gaps = 1/1198 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            M S+ +EK  VVTQVS+GGF RHV AKDL ++ ++E+G+V+RCRLKTS TPPESYP++ I
Sbjct: 1    MESQGSEKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEI 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             D+  I+R DDYKKVEPHAFVHFA   +A W +DAAGR EL+ N++ LKVSLGPENPY L
Sbjct: 61   LDSTVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            N+RRR TTP KLSDV +DIG +V+RD+FF+ WRGPP+GVDFLVDPFDGTCKFCF+RDTAF
Sbjct: 121  NRRRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            SFKG+  +AVIKCDFK+EFLVRDINE KQYT+ S LV+ LQL S+PR+WYRTADD+I++S
Sbjct: 181  SFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEES 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            VP+D+LDDDD WIRTTDFTPSGAIGR N+YR+ + PRHGAKLKKA+ YLRE+RV  D +R
Sbjct: 241  VPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVR 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
            WPLRI  EPDF   MSDPF+CI YKE I FE MFLVNAV+HKGIFNQHQ+S+ FFNLLR+
Sbjct: 301  WPLRISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRD 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q +EVNVAALKHI SY+RPVFDAY+RLK V +WLLR+P LFK PK+LDDI E+RRLVITP
Sbjct: 361  QPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            T+A+CL PEVELSNRVLR YKEVADRFLRVTFMDEGMQTIN+NVLTY+ ASIVR++TS  
Sbjct: 421  TKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTF 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
            F QKT VF+R++SILT+GFYLCGRKYSFLAFS+NQLRD SAWFFAED   +V ++  WMG
Sbjct: 481  FSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            +FTN+N+AKCAARMG CFSSTYA+VEVPST+VN   PDI+RNGY FSDGIGKITPDLA E
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKE 600

Query: 3728 VAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSW 3907
            VAQKLKL+ NPPCAYQIRYAG KGVVACW P + DG RLSLR SM+KF S+HT LEICSW
Sbjct: 601  VAQKLKLDLNPPCAYQIRYAGCKGVVACW-PEEGDGVRLSLRCSMNKFFSDHTTLEICSW 659

Query: 3908 TRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGN 4087
            TRFQPGFLNRQI+TLLS   V DE+FW MQ TM+ KLN++L+DTD+AF+VLT+SC+EQGN
Sbjct: 660  TRFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGN 719

Query: 4088 VAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 4267
             AAIMLSAGF PQ EPHLRG+LTC+RA+QL GLREKARIFVPSGRWLMG LDELGVLEQG
Sbjct: 720  AAAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQG 779

Query: 4268 QCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDL 4447
            QCFIQVSNPS+ENCF KHGSRF E   N EVI+G VVIAKNPCLHPGD+RILEAVD P L
Sbjct: 780  QCFIQVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGL 839

Query: 4448 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQL 4627
            HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTW++ LIPP KKSW PMQYD  ETK++
Sbjct: 840  HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEI 899

Query: 4628 TRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPK 4807
             R V  +DII+FF+KNMVNE+LGTICNAHVVHADLSE+GALDEKC+ LA+LAATAVDFPK
Sbjct: 900  QREVNHKDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPK 959

Query: 4808 TGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLPS 4987
            TGKIV+MP NLKPKLYPDFMGK+EYQSYKS KILG+LYR IKD YDED++ SSEIN    
Sbjct: 960  TGKIVSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSP 1019

Query: 4988 DIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSR 5167
            DI YD DLEV+G++D+I DAW +KCSYD QL GLLGQYKV REEEVVTGHIWSMPKY+SR
Sbjct: 1020 DINYDTDLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSR 1079

Query: 5168 KQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEWV 5347
            K G+LKE+L HSY AL+KEFRQIFE M+ + E+L++DE+N +YE+KASAWYQVTYHP+WV
Sbjct: 1080 KLGDLKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWV 1139

Query: 5348 KKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            +K L+LQ+ DG+   VMLSFAWIAADYL RIKIR +G GNVD  KP+N+L KYL+D++
Sbjct: 1140 EKKLELQKSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>ref|XP_010101266.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
            gi|587899821|gb|EXB88201.1| RNA-dependent RNA polymerase
            6 [Morus notabilis]
          Length = 1194

 Score = 1884 bits (4879), Expect = 0.0
 Identities = 909/1194 (76%), Positives = 1037/1194 (86%), Gaps = 2/1194 (0%)
 Frame = +2

Query: 1946 NEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDY-TIDTAA 2122
            +EK  VVTQ+S+GGFDRHV+AKDL DFLE E+G+VYRCRLKTS T  ESYP +  I++  
Sbjct: 6    SEKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFENINSEN 65

Query: 2123 IERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRLNQRRR 2302
            I    D ++VEPHAFVHFA  ES  W L       L+LN++ LKV+LGPE  YR+NQRRR
Sbjct: 66   IMESIDIRQVEPHAFVHFASPESVNWTLSNP----LMLNNQTLKVTLGPETLYRMNQRRR 121

Query: 2303 TTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAFSFKGS 2482
            TTTPIKL+DV+V+IG LV RD+FF+AWRGP YGVDFLVDPFDG CKFCFTRDTAFSFK  
Sbjct: 122  TTTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFKDM 181

Query: 2483 LNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDSVPYDM 2662
               A++KCDFK+EFLVRDINE KQYTDTS+LV+LL L S+PR+WYRTADDDI+ SVP+D+
Sbjct: 182  AKLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPFDL 241

Query: 2663 LDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLRWPLRI 2842
            LDDDDPWIRTTDFTPSGAIGR NSYR+S+PPRHG+KLKKA+SYLRERRV    LR  LRI
Sbjct: 242  LDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLRKALRI 301

Query: 2843 QKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRNQMKEV 3022
            Q EPDF +PMSDP F +H K  I FE MFL+N ++HKGIFNQH ISDG F+L RNQ +E+
Sbjct: 302  QSEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQPREI 361

Query: 3023 NVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITPTRAYC 3202
            N+AALKHISSYKRPVFDAY +LK VQEWLLR+PKL K P++LDDIAEVRRLVITPTRAYC
Sbjct: 362  NLAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITPTRAYC 421

Query: 3203 LPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNSFPQKT 3382
            LPPEVELSNRVLR YKEV+DRFLRVTFMDEGMQT+N NVLTY+ A IV+E+TSNS  QKT
Sbjct: 422  LPPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKT 481

Query: 3383 KVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMGRFTNK 3562
            KVF+R+KS+LT+GFYLCG++YSFLAFSSNQLRDRSAWFFAED  I V  +K WMGRF N+
Sbjct: 482  KVFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWMGRFNNR 541

Query: 3563 NVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALEVAQKL 3742
            N+AKCAARMG CFSSTYA+VEVP T+VN    +I+RN Y FSDGIG ITPDLA EVA+KL
Sbjct: 542  NIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVAEKL 601

Query: 3743 KLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSWTRFQP 3922
            KL+ NPP AYQIRYAG KGVVACW P  D G RLSLR SM+KF S HTILEICSWTRFQP
Sbjct: 602  KLDINPPSAYQIRYAGCKGVVACWPPKGD-GIRLSLRRSMNKFDSKHTILEICSWTRFQP 660

Query: 3923 GFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGNVAAIM 4102
            GFLNRQIVTLLS LNV DEIFW MQETM+FKLNQML D D+AF+VLTASC EQGNV AIM
Sbjct: 661  GFLNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIM 720

Query: 4103 LSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQ 4282
            LSAGF PQ EPHL+GMLTCIRAAQLWGLREKARIFVP GRWLMGCLDELGVLEQGQCFIQ
Sbjct: 721  LSAGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQ 780

Query: 4283 VSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDLHHLYD 4462
            VS PSLENCFSKHGSRF+E  +NLEVIKGFVVIAKNPCLHPGD+RILEAVDVP LHHLYD
Sbjct: 781  VSTPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYD 840

Query: 4463 CLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQLTRPVT 4642
            CLVFPQKG+RPH NEASGSDLDGDLYFVTWDENLIPPSKKSW PMQYD A+ + L R VT
Sbjct: 841  CLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRTLPRDVT 900

Query: 4643 QEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPKTGKIV 4822
            Q+DII+FFS+NMVNE+LG ICNAHVVHADLS++GALDEKCL LA+LAA AVDFPKTG IV
Sbjct: 901  QKDIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFPKTGIIV 960

Query: 4823 TMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLPSDIPYD 5002
            TMP +LKPK+YPDFMGK+EYQSYKS KI+G+LYR+IKD Y +DV+ SSE+N + S+IP+D
Sbjct: 961  TMPAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIVSSNIPFD 1020

Query: 5003 IDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSRKQGEL 5182
             DLEV GA+DF+ DAWE+KCSYDGQL GL+ QYKV REEEVVTG IWSMPK++SRK+G+L
Sbjct: 1021 TDLEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNSRKEGDL 1080

Query: 5183 KERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEWVKKSLD 5362
            KERLKHSY+ L+KEFRQ+FEK++  FE+L+DDEKN++YE++ASAWYQ+TYHP+WVKKS D
Sbjct: 1081 KERLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKWVKKSQD 1140

Query: 5363 LQEP-DGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            + +  +  ++ VMLSFAWIAADYL RIKIRCRGVG+ D  KPIN+LGKYL+DR+
Sbjct: 1141 MHDQLEEVKNVVMLSFAWIAADYLARIKIRCRGVGDADSTKPINSLGKYLADRI 1194


>ref|XP_008394093.1| PREDICTED: RNA-dependent RNA polymerase 6 [Malus domestica]
            gi|658003179|ref|XP_008394094.1| PREDICTED: RNA-dependent
            RNA polymerase 6 [Malus domestica]
          Length = 1197

 Score = 1878 bits (4864), Expect = 0.0
 Identities = 892/1198 (74%), Positives = 1033/1198 (86%), Gaps = 1/1198 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYT- 2107
            M S+ +E   VVTQ+S GGF RHV+A DL  +LEDEIGLVYRCRLKTS TP ES+P++  
Sbjct: 1    MESEASETSTVVTQLSFGGFGRHVKASDLVTYLEDEIGLVYRCRLKTSWTPQESFPNFEL 60

Query: 2108 IDTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
            ID + I R +DY  VEPHAFVHFA+ ES  + +DAAGR +L  N+ PLKVSLGPENPY L
Sbjct: 61   IDPSNIARTNDYIMVEPHAFVHFAMPESVTFAMDAAGRSQLFYNNEPLKVSLGPENPYFL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            N+RRR  TP KLSDV VDIG+LV +D+FF+AWRGP YGVDF+VDPFDGTCKFCFTRDTAF
Sbjct: 121  NRRRRDKTPFKLSDVCVDIGSLVRQDEFFVAWRGPTYGVDFIVDPFDGTCKFCFTRDTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            SFKG   HAVIKCDF +EFLVRD++E KQYTDT+Y V+LL+L S+P + YRTADDDID S
Sbjct: 181  SFKGIKKHAVIKCDFMVEFLVRDVSEIKQYTDTAYHVILLRLASSPWVSYRTADDDIDQS 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            VP+++LDDDDPWIRTTDFTPSGAIGR N YR+S+PPRHGAKLK+ + YLRE RV    L+
Sbjct: 241  VPFNLLDDDDPWIRTTDFTPSGAIGRCNCYRVSIPPRHGAKLKRTMDYLREHRVREVCLK 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
             P ++Q EPDF MP SDPFFCIHYK+DI FE MFLVNAV+HKGIFNQHQ+SD FF+LLR+
Sbjct: 301  RPPKVQNEPDFGMPASDPFFCIHYKDDISFEIMFLVNAVMHKGIFNQHQLSDSFFDLLRS 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q KEVNVAALKH+ +YK P FDA +RLKVVQ+WLL++PKLFK PKRLDDI+EVRRL+ITP
Sbjct: 361  QPKEVNVAALKHLCTYKHPEFDACKRLKVVQDWLLKNPKLFKDPKRLDDISEVRRLIITP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            T+AYCLPPEVELSNRVLR YKEVADRFLRVTFMDEGMQTINS+VL  +VA IV+EI +N+
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINSHVLNSYVAPIVKEIMTNA 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
             PQKT VF+R+K+ILT+GFYLC RKYSFLAFSSNQL+DRSAWFFAED NI +  +K WMG
Sbjct: 481  SPQKTNVFKRVKTILTDGFYLCSRKYSFLAFSSNQLKDRSAWFFAEDMNIAILDIKKWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            +F NKN+AKCAARMGLCFSSTYA+V+VP ++VN   PDIKRN Y FSDGIGKITPDLA++
Sbjct: 541  KFANKNIAKCAARMGLCFSSTYATVDVPLSEVNFDLPDIKRNEYDFSDGIGKITPDLAMK 600

Query: 3728 VAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSW 3907
            VA+KLKL+R+PPCAYQIRYAG KGVVACW P++ DG RLSLRPSM+KF+S HTILEICSW
Sbjct: 601  VAEKLKLDRDPPCAYQIRYAGCKGVVACW-PSNGDGYRLSLRPSMNKFKSCHTILEICSW 659

Query: 3908 TRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGN 4087
            TR QPGFLNRQI+TLLSAL+V DEIFW  QE M+ KLN+ML+DTD+AFDVLT SCAEQGN
Sbjct: 660  TRLQPGFLNRQIITLLSALDVPDEIFWRKQERMVLKLNRMLVDTDVAFDVLTGSCAEQGN 719

Query: 4088 VAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 4267
             AAIMLSAGF PQ EPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG
Sbjct: 720  AAAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 779

Query: 4268 QCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDL 4447
            QCF+QVS PSL+NCF+ HGSRF++   NL+VIKG VVIAKNPCLHPGD+RILEAVD P+L
Sbjct: 780  QCFVQVSTPSLQNCFANHGSRFDKIEKNLQVIKGLVVIAKNPCLHPGDIRILEAVDAPEL 839

Query: 4448 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQL 4627
             HL+DC++FPQKG+RPHTNEASGSDLDGDLYFVTWDE+LIPPSKKSW PM YD  E K  
Sbjct: 840  RHLHDCILFPQKGDRPHTNEASGSDLDGDLYFVTWDEDLIPPSKKSWTPMMYDPQEAKPH 899

Query: 4628 TRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPK 4807
             RP+TQ DII F  KNMVNENLG ICNAHVVHAD S++GA+DE CL LA+ AA AVDFPK
Sbjct: 900  GRPITQMDIINFXXKNMVNENLGAICNAHVVHADRSDYGAMDENCLLLAEYAALAVDFPK 959

Query: 4808 TGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLPS 4987
            TGK V +P +LKPK+YPDFMGK+E+Q+YKS KILG+LYR I+DAYDE++  S E+N+ P 
Sbjct: 960  TGKTVALPAHLKPKMYPDFMGKEEHQTYKSTKILGRLYRHIRDAYDEEMATSLELNYTPG 1019

Query: 4988 DIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSR 5167
            DIPYD+DLE+ GA+DFI DAWE+KCSYDGQ+ GL+GQYKV REEE+VTGH+WS+PK +S+
Sbjct: 1020 DIPYDMDLEIPGATDFIADAWEKKCSYDGQVKGLMGQYKVKREEEIVTGHVWSIPKSNSK 1079

Query: 5168 KQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEWV 5347
            KQGELKERLK SY ALKKEFR IFE  +   E L+DDEK+I+YEQKASAWYQVTYHP+WV
Sbjct: 1080 KQGELKERLKQSYGALKKEFRLIFENRDPNIESLTDDEKSILYEQKASAWYQVTYHPKWV 1139

Query: 5348 KKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            K+S+ LQEPD + +  MLSFAWI ADYL RIKI+ RGV ++D  KPIN+L KYL+DRM
Sbjct: 1140 KRSIHLQEPDVAGNVAMLSFAWITADYLARIKIKRRGVEHIDSPKPINSLSKYLADRM 1197


>gb|KDO61726.1| hypothetical protein CISIN_1g041430mg [Citrus sinensis]
          Length = 1197

 Score = 1877 bits (4861), Expect = 0.0
 Identities = 907/1199 (75%), Positives = 1038/1199 (86%), Gaps = 2/1199 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPD-YT 2107
            M  +  EK +V  QVS GGFDR+V+A +L  +LE+E+G V+RCRLKTS TP ESYPD Y 
Sbjct: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60

Query: 2108 IDTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             +TA + + DDY+KVEPHAFVHFA+       +DAAGR EL LN R LKVSLGPENP+RL
Sbjct: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            NQR RT+TP KL DV V+IGTLV+RD+FF+AWRGP  G DFLVDPFDGTCKFCFTRD AF
Sbjct: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            + K S  HAVIKC+FK+EFLVR+IN  KQY++ S + +LLQL S+PR+WYRTADDDI   
Sbjct: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            VP+DMLDDDDPWIRTTDFTPSGAIGR NSYRIS+  RH  KL K I+YL ERRV  DSL 
Sbjct: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
             P+ I++EPDF++PMSDPFFCIHY+E I FE MFLVNAV+HKGI NQHQ+SD FF+LLR 
Sbjct: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q +EVNVAALKHI SYK PVFDA +RLK+VQEWLL+DP+L+K PK++DDI EVRRLVITP
Sbjct: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            T+AYCLPPEVELSNRVLR YK++ADRFLRVTFMDEG+QT+N+NVL+Y +A IVR+IT NS
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
            F QKT+VF+R++SIL+ GFYLCGRK+SFLAFSS+QLRD SAWFF+ED   +V  +K WMG
Sbjct: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            RFT+KN+AKCAARMG CFSSTYA+VEVP T+V+   PDIKRNGY FSDGIGKITPDLA+E
Sbjct: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600

Query: 3728 VAQKLKLERN-PPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICS 3904
            VAQKLKL+ N PPCAYQIRYAG KGVVACW P   DG R+SLR SM+KFQS+HT LEICS
Sbjct: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACW-PAKGDGIRMSLRESMNKFQSHHTTLEICS 659

Query: 3905 WTRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQG 4084
            WTRFQPGFLNRQI+TLLS LNV DE+FW+MQ++M+ KLNQML+D+D+AF+VLTA+CAEQG
Sbjct: 660  WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG 719

Query: 4085 NVAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQ 4264
            N AAIMLSAGF+PQ EPHLRGMLTCIRAAQLWGLREKARIFVP+GRWLMGCLDELGVLE 
Sbjct: 720  NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779

Query: 4265 GQCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPD 4444
            GQCFIQVS P L NCFSKHGSRF E    L+VIKGFVVIAKNPCLHPGD+RILEAVD P+
Sbjct: 780  GQCFIQVSEPFLGNCFSKHGSRFAE-TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838

Query: 4445 LHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQ 4624
            LHHLYDCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW PM+Y+AAE K 
Sbjct: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898

Query: 4625 LTRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFP 4804
            LTRPV Q DIIEFF+K+MVNENLGTICNAHVVHAD SE+GALDE C+ LA+LAATAVDFP
Sbjct: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958

Query: 4805 KTGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLP 4984
            KTGKIVTMP +LKPKLYPDFMGK+ YQSYKSNKILG+LYR+ KDAYDED++ SSE++  P
Sbjct: 959  KTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018

Query: 4985 SDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSS 5164
             DI YD DLEV  + DFI DAW QKCSYDGQLNGLL QYKVNREEE+VTGHIWSMPKY+S
Sbjct: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078

Query: 5165 RKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEW 5344
            RKQGELKERLKHSYSAL+KEFRQ+FEKM+   E LS+DEKN ++E+KASAWYQVTYHPEW
Sbjct: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138

Query: 5345 VKKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            VKKSLDLQE D +R  V+LSFAWIA DYL RIKIRCR + N+D  KP+N L +Y++DR+
Sbjct: 1139 VKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197


>ref|XP_009355733.1| PREDICTED: RNA-dependent RNA polymerase 6 [Pyrus x bretschneideri]
            gi|694330031|ref|XP_009355734.1| PREDICTED: RNA-dependent
            RNA polymerase 6 [Pyrus x bretschneideri]
          Length = 1197

 Score = 1875 bits (4858), Expect = 0.0
 Identities = 888/1198 (74%), Positives = 1037/1198 (86%), Gaps = 1/1198 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYT- 2107
            M S+ +E   VVTQ+S GGF RHV+A DL  +LEDEIGLVYRCRLKTS TP ES+P++  
Sbjct: 1    MESEASETSTVVTQLSFGGFGRHVKASDLVTYLEDEIGLVYRCRLKTSWTPQESFPNFEL 60

Query: 2108 IDTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
            IDT+ I R +DY  VEPHAFVHFA+ ES    +DAAGR +L  N+ PLKVSLGPENPY L
Sbjct: 61   IDTSNIARTNDYIMVEPHAFVHFAMTESVTSAMDAAGRSQLFYNNEPLKVSLGPENPYFL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            N+RRR  TP KLSDV V+IG+LV +D+FF+AWRGP YGVDF+VD FDGTCKFCFTRD AF
Sbjct: 121  NRRRRDKTPFKLSDVCVEIGSLVHQDEFFVAWRGPAYGVDFIVDAFDGTCKFCFTRDIAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            SFKG   HAVIKCDF +EFLVRDI+E KQYTDT+Y V+LL+L S+P + YRTADDDID S
Sbjct: 181  SFKGIRKHAVIKCDFMVEFLVRDISEIKQYTDTAYHVILLRLASSPLVSYRTADDDIDQS 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            VP+++LDDDDPWIRTTDFTPSGAIGR N YR+S+PPRHGAKLK+ ++YLRE RV    L+
Sbjct: 241  VPFNLLDDDDPWIRTTDFTPSGAIGRCNCYRVSIPPRHGAKLKRTMAYLRECRVREVCLK 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
             P ++Q EPDF MP SDPFFCIHYK+DI FE MFLVNAV+HKGIFNQHQ+SD FF+LLR+
Sbjct: 301  RPPKVQNEPDFGMPASDPFFCIHYKDDISFEIMFLVNAVMHKGIFNQHQLSDSFFDLLRS 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q KEVN+AALKH+ +YK P FDA +RLKVVQ+WLL++PKLFK PKRLDDI+EVRRL+ITP
Sbjct: 361  QPKEVNLAALKHLCTYKHPEFDACKRLKVVQDWLLKNPKLFKDPKRLDDISEVRRLIITP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            T+AYCLPPEVELSNRVLR YKEVADRFLRVTFMDEGMQTINS+VL  +VA IV+EI +N+
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINSHVLNSYVAPIVKEIMTNA 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
             PQKT VF+R+K+ILT+GFYLC RKYSFLAFSSNQLRDRSAWFFAE  NI +  +K+WMG
Sbjct: 481  SPQKTNVFKRVKTILTDGFYLCSRKYSFLAFSSNQLRDRSAWFFAEGMNITILDIKTWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            +F NKN+AKCAARMGLCFSSTYA+V+VP ++VN   PDIK+  Y FSDGIGKITPDLA++
Sbjct: 541  KFANKNIAKCAARMGLCFSSTYATVDVPLSEVNFALPDIKKGKYDFSDGIGKITPDLAMK 600

Query: 3728 VAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSW 3907
            VA+KLKL+R+PPCAYQIRYAG KGVVACW P++ DG RLSLRPSM+KF+S HTILEICSW
Sbjct: 601  VAEKLKLDRDPPCAYQIRYAGCKGVVACW-PSNGDGHRLSLRPSMNKFESCHTILEICSW 659

Query: 3908 TRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGN 4087
            TR QPGFLNRQI+TLLSAL+V DEIFW MQE M+ +LNQML+DTD+AFDVLT SCAEQGN
Sbjct: 660  TRLQPGFLNRQIITLLSALDVPDEIFWRMQERMVLRLNQMLVDTDVAFDVLTGSCAEQGN 719

Query: 4088 VAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 4267
             AAIMLSAGF PQ EPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG
Sbjct: 720  AAAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 779

Query: 4268 QCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDL 4447
            QCF++VS PSL+NCF+ HGSRF++  +NL+VIKG VVIAKNPCLHPGD+RILEAVD P+L
Sbjct: 780  QCFVRVSTPSLQNCFANHGSRFDKIENNLQVIKGLVVIAKNPCLHPGDIRILEAVDAPEL 839

Query: 4448 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQL 4627
            HHL+DC++FP+KG+RPHTNEASGSDLDGDLYFVTWDE+LIPPSKKSW PM YD  E K  
Sbjct: 840  HHLHDCILFPRKGDRPHTNEASGSDLDGDLYFVTWDEDLIPPSKKSWTPMLYDPQEAKPH 899

Query: 4628 TRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPK 4807
             RP+TQ DII FF+KNMVNENLG ICNAHVVHAD S++GA+DE CL LA+ AA AVDFPK
Sbjct: 900  GRPITQTDIINFFAKNMVNENLGAICNAHVVHADRSDYGAMDENCLLLAEYAALAVDFPK 959

Query: 4808 TGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLPS 4987
            TGK V +P +LKPK+YPDFMGK+EYQ+YKS KILG+LYR I+DAYDE++  S E+N+ P 
Sbjct: 960  TGKTVALPAHLKPKMYPDFMGKEEYQTYKSTKILGRLYRHIRDAYDEEMATSLELNYTPG 1019

Query: 4988 DIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSR 5167
            DIPYD+DLE+ GA+DFI DAWE+KCSYDGQ+ GL+GQYKV REEE+VTGH+WS+PK +S+
Sbjct: 1020 DIPYDMDLEIPGATDFIADAWEKKCSYDGQVKGLMGQYKVKREEEIVTGHVWSIPKSNSK 1079

Query: 5168 KQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEWV 5347
            KQGELKERLK SYSALKKEFR +FE  +   E L+DDE++I+YEQKASAWYQVTYHP+WV
Sbjct: 1080 KQGELKERLKQSYSALKKEFRLVFENRDSNIESLTDDERSILYEQKASAWYQVTYHPKWV 1139

Query: 5348 KKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            K+S+ LQEPD + +  +LSFAWI ADYL RIKI+ RGV ++D  KPIN+L KYL+DRM
Sbjct: 1140 KRSIHLQEPDVAGNVALLSFAWITADYLARIKIKRRGVEHIDSSKPINSLSKYLADRM 1197


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1875 bits (4858), Expect = 0.0
 Identities = 905/1199 (75%), Positives = 1040/1199 (86%), Gaps = 2/1199 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            M  +  EK +V  QVS GGFDR+V+A +L  +LE+E+G V+RCRLKTS TP ESYPD+++
Sbjct: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSV 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             +TA + + DDY+KVEPHAFVHFA+       +DAAGR EL LN + LKVSLGPENP+RL
Sbjct: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            NQR RT+TP KL DV V+IGTLV+RD+FF+AWRGP  G DFLVDPFDGTCKFCFTRD AF
Sbjct: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            + K S  HAVIKC+FK+EFLVR+IN  KQY++ S + +LLQL S+PR+WYRTADDDI   
Sbjct: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            VP+DMLDDDDPWIRTTDFTPSGAIGR NSYRIS+  RH  KL K I+YL ERRV  DSL 
Sbjct: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
             P+ I++EPDF++PMSDPFFCIHY+E I FE MFLVNAV+HKGI NQHQ+SD FF+LLR 
Sbjct: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q +EVNVAALKHI SYK PVFDA +RLK+VQEWLL+DP+L+K PK++DDI EVRRLVITP
Sbjct: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            T+AYCLPPEVELSNRVLR YK++ADRFLRVTFMDEG+QT+N+NVL+Y +A IVR+IT NS
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
            F QKT+VF+R++SIL+ GFYLCGRK+SFLAFSS+QLRD SAWFF+ED   +V  +K WMG
Sbjct: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            RFT+KN+AKCAARMG CFSSTYA+VEVP T+V+   PDIKRNGY FSDGIGKITPDLA+E
Sbjct: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600

Query: 3728 VAQKLKLERN-PPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICS 3904
            VAQKLKL+ N PPCAYQIRYAG KGVVACW P   DG R+SLR SM+KFQS+HT LEICS
Sbjct: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACW-PAKGDGIRMSLRESMNKFQSHHTTLEICS 659

Query: 3905 WTRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQG 4084
            WTRFQPGFLNRQI+TLLS LNV DE+FW+MQ++M+ KLNQML+D+D+AF+VLTA+CAEQG
Sbjct: 660  WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG 719

Query: 4085 NVAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQ 4264
            N AAIMLSAGF+PQ EPHLRGMLTCIRAAQLWGLREKARIFVP+GRWLMGCLDELGVLE 
Sbjct: 720  NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779

Query: 4265 GQCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPD 4444
            GQCFIQVS P L NCFSKHGSRF E    L+VIKGFVVIAKNPCLHPGD+RILEAVD P+
Sbjct: 780  GQCFIQVSEPFLGNCFSKHGSRFAE-TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838

Query: 4445 LHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQ 4624
            LHHLYDCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW PM+Y+AAE K 
Sbjct: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898

Query: 4625 LTRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFP 4804
            LTRPV Q DIIEFF+K+MVNENLGTICNAHVVHAD SE+GALDE C+ LA+LAATAVDFP
Sbjct: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958

Query: 4805 KTGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLP 4984
            KTGKIVTMP +LKPKLYPDFMGK+ YQSYKSNKILG+LYR+ KDAYDED++ SSE++  P
Sbjct: 959  KTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018

Query: 4985 SDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSS 5164
             DI YD DLEV  + DFI DAW QKCSYDGQLNGLL QYKVNREEE+VTGHIWSMPKY+S
Sbjct: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078

Query: 5165 RKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEW 5344
            RKQGELKERLKHSYSAL+KEFRQ+FEKM+   E LS+DEKN ++E+KASAWYQVTYHPEW
Sbjct: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138

Query: 5345 VKKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            VKKSLDLQE D +R  V+LSFAWIA DYL RIKIRCR + N+D  KP+N L +Y++DR+
Sbjct: 1139 VKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197


>ref|XP_004291459.2| PREDICTED: RNA-dependent RNA polymerase 6 isoform X1 [Fragaria vesca
            subsp. vesca]
          Length = 1200

 Score = 1870 bits (4844), Expect = 0.0
 Identities = 904/1199 (75%), Positives = 1026/1199 (85%), Gaps = 1/1199 (0%)
 Frame = +2

Query: 1928 KMGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYT 2107
            KM  +E E   VVTQVS GGF  HV AK+L  +LEDEIGLV+RCRLKTS TPPES P++ 
Sbjct: 3    KMELEERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFE 62

Query: 2108 I-DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYR 2284
            I D A IE  DDY+KVEPHAFVHFA  ES   ++DA GRC+L  N++ LK SLGPEN + 
Sbjct: 63   ISDAADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFN 122

Query: 2285 LNQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTA 2464
            +N+RRRT  P KL+DV ++IG+LV  D+FF+AW+GP +GVDF+VDPFDGTCKFCF RDTA
Sbjct: 123  MNKRRRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTA 182

Query: 2465 FSFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDD 2644
            FSFKG   HAVI CDFK EF VR+I EFK YT+  Y VLLL+L S+P + YRTADDDID 
Sbjct: 183  FSFKGLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQ 242

Query: 2645 SVPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSL 2824
            SV +D+LDDDDPWIRTTDFTP+GAIGR N YR+ +PPRHGAKLKKA+ YL+ERRV    +
Sbjct: 243  SVLFDLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFI 302

Query: 2825 RWPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLR 3004
            + P RIQ EP F  PMSD  F IHY+++I F+ +FLVNAV+HKGI NQHQ+S+ FF+LLR
Sbjct: 303  KKPPRIQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLR 362

Query: 3005 NQMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVIT 3184
            NQ +E+NVAALKH+ SYK PVFDA +RLK+VQEWLLR+PKL K PKRLDDIAEVRRLVIT
Sbjct: 363  NQPEEINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVIT 422

Query: 3185 PTRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSN 3364
            PT+AYCLPPEVELSNRVLR YKEVADRFLRVTFMDEGMQT+NSNV+  +VA IV+EIT N
Sbjct: 423  PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITEN 482

Query: 3365 SFPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWM 3544
            +FPQKTKV+ RI++IL NGF+LCGRKYSFLAFSSNQLRDRSAWFFAEDK I++  +K+WM
Sbjct: 483  TFPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWM 542

Query: 3545 GRFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLAL 3724
            GRFTN+NVAKCAARMG CFSSTYA+VEVPSTQVN   PDI+RNGY FSDGIG+ITPDLA+
Sbjct: 543  GRFTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAM 602

Query: 3725 EVAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICS 3904
            EVA+KLKL+R+PP AYQIRY G KGVVACW P+  DG RLSLR SM+KF S+HT LEICS
Sbjct: 603  EVAEKLKLDRDPPSAYQIRYGGCKGVVACW-PSTGDGFRLSLRRSMNKFASDHTTLEICS 661

Query: 3905 WTRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQG 4084
            WTR QPGFLNRQI+TLLSALNV DEIFW MQETM+ KL QML+DTD+AFDVLTASCAEQG
Sbjct: 662  WTRLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQG 721

Query: 4085 NVAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQ 4264
            N AAIMLSAGF PQ EPHLRGMLTCI+AAQLWGLREK RIFVPSGRWLMGCLDELGVLEQ
Sbjct: 722  NSAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQ 781

Query: 4265 GQCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPD 4444
            GQCF+QVS PSLENCF+KHGSRF++ + NL+VIKGFVV+AKNPCLHPGD+RILEAVD P 
Sbjct: 782  GQCFVQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPG 841

Query: 4445 LHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQ 4624
            LHHL+DCLVFPQKG RPHT+EASGSDLDGDLYFVTWDENLIPP KKSW PM+Y+ AE K 
Sbjct: 842  LHHLHDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKL 901

Query: 4625 LTRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFP 4804
              R VT +D+IEFF +NMVNENLG ICNAHVVH+D SE+GA DE CLKLA+LAA AVDFP
Sbjct: 902  SGRSVTSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFP 961

Query: 4805 KTGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLP 4984
            KTGKIVTMP +LKPKLYPDFMGK +YQSYKSNKILG+LYRKI DAYDEDV  SSE N +P
Sbjct: 962  KTGKIVTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVP 1021

Query: 4985 SDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSS 5164
            SD+ YD+DLEV  A+DFI DAWE+KCSYD QL GL+ QYK+ REEE+VTGH+WSMPKY+S
Sbjct: 1022 SDVKYDMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTS 1081

Query: 5165 RKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEW 5344
            RKQGEL+ERLKHSYSALKKEFRQ FEKM+  FE L DD+KN  YEQKASAWYQVTYHP+W
Sbjct: 1082 RKQGELQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDW 1141

Query: 5345 VKKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            VKKSLDL  PDG  D VMLSFAWIAADYL RIKI+ R V N+D  KPIN L KYL+DR+
Sbjct: 1142 VKKSLDLHGPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1200


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
            gi|731385864|ref|XP_010648660.1| PREDICTED: RNA-dependent
            RNA polymerase 6 [Vitis vinifera]
            gi|731385866|ref|XP_010648661.1| PREDICTED: RNA-dependent
            RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1869 bits (4841), Expect = 0.0
 Identities = 914/1203 (75%), Positives = 1041/1203 (86%), Gaps = 6/1203 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            M S+ +EK MVVTQ+S+GGFD++V A +L+ +LED IG V RCRLKTSSTPPESYPD+ I
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             DTA IER +DYKKVEPHAFVHF   E+A W LDAAG+ EL L+ +PLKVSLGPE P+ L
Sbjct: 61   IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            NQRRRTT P K  DV ++IG LV+RD++F  WRGP  GVDFLVDPFDGTCKF FT+DTAF
Sbjct: 121  NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            SFKG   HAVIKC+FK+EFLVR+INE +Q  D S L+LLLQL+S+P ++YRTADDDI+++
Sbjct: 181  SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVH--HDS 2821
            VP+D+LDDDDPWIRTTDFT SGAIGR NSYRIS+PPR+GAKLKKA+ YLR RRV+   DS
Sbjct: 241  VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300

Query: 2822 LRWPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLL 3001
             +W LR++ EPDF +PMSDPFFCI +KE IDF  MFLVNAV+HKGI NQHQ+SD FF+LL
Sbjct: 301  PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360

Query: 3002 RNQMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVI 3181
            R+Q K++N+AALKHI SY+ PVFDAY+RLK+V +WLL++PKL K PK LDDI EVRRLVI
Sbjct: 361  RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420

Query: 3182 TPTRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITS 3361
            TP++AYCLPPEVELSNRVLRNYKEV+DRFLRVTFMDEGMQTIN+NVL Y+VA IV+ ITS
Sbjct: 421  TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480

Query: 3362 NSFPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSW 3541
            NSFPQKT+VF+R+K+ILT+GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK  +V  +KSW
Sbjct: 481  NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540

Query: 3542 MGRFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLA 3721
            MG+FTN+NVAKCAARMG CFSSTYA+VEVPS +V    PDIKRNGY FSDGIGKI PDLA
Sbjct: 541  MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVKE-LPDIKRNGYDFSDGIGKIVPDLA 599

Query: 3722 LEVAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEIC 3901
            +EVA+KLKLE   P AYQIRYAG KGVVACW P+D+DG RLS RPSM+KF S+HTILEIC
Sbjct: 600  MEVAEKLKLE-GTPSAYQIRYAGCKGVVACW-PSDNDGIRLSWRPSMNKFLSDHTILEIC 657

Query: 3902 SWTRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQ 4081
            SWTRFQPGFLNRQIVTLLSALNV D+IFW MQE+MI KLNQML DTD+AFDVL ASCAEQ
Sbjct: 658  SWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQ 717

Query: 4082 GNVAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLE 4261
            GN AAIMLSAGF PQ EPHL+GMLTCIRAAQ WGLREKARIFVPSGRWLMGCLDELGVLE
Sbjct: 718  GNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLE 777

Query: 4262 QGQCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVP 4441
            QGQCFIQVS+PSLENCF KHGSRF+ +  NL+VIKG V IAKNPCLHPGDVRILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFLKHGSRFSAQK-NLKVIKGIVAIAKNPCLHPGDVRILEAVDAP 836

Query: 4442 DLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETK 4621
             L HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTW+E LIPPSK+SW PMQYD+AE K
Sbjct: 837  GLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAK 896

Query: 4622 QLTRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDF 4801
             L R VT  DII+FF+KNMVNENLG ICNAHVVHAD SE+GALDE CL LA+ AATAVDF
Sbjct: 897  ALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDF 956

Query: 4802 PKTGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFL 4981
            PKTGK+VT+P  LKPK+YPDFMGK+E+Q+Y+SNKILGK+YR+IKDAY+EDV+ SSE  F 
Sbjct: 957  PKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFG 1016

Query: 4982 PSDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYS 5161
               +P+D DL + G++DFI DAW  KCSYDGQLNGLLGQYKV REEEVVTGH+WSMPKY 
Sbjct: 1017 ADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYK 1076

Query: 5162 SRKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPE 5341
            SRKQGEL ERLKH+YS+LKKEFRQIFEKM   F++L+DDEKN +YEQKASAWYQVTYHP 
Sbjct: 1077 SRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPT 1136

Query: 5342 WVKKSLDLQEPD---GSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLS 5512
            WVKKSL+LQ PD   G R  VMLSFAWI ADYL RIKIR +G GNVD  KPIN+L ++L 
Sbjct: 1137 WVKKSLELQNPDEVFGER--VMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLV 1194

Query: 5513 DRM 5521
            DR+
Sbjct: 1195 DRI 1197


>ref|XP_011459183.1| PREDICTED: RNA-dependent RNA polymerase 6 isoform X2 [Fragaria vesca
            subsp. vesca]
          Length = 1197

 Score = 1868 bits (4839), Expect = 0.0
 Identities = 903/1198 (75%), Positives = 1025/1198 (85%), Gaps = 1/1198 (0%)
 Frame = +2

Query: 1931 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 2110
            M  +E E   VVTQVS GGF  HV AK+L  +LEDEIGLV+RCRLKTS TPPES P++ I
Sbjct: 1    MELEERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEI 60

Query: 2111 -DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRL 2287
             D A IE  DDY+KVEPHAFVHFA  ES   ++DA GRC+L  N++ LK SLGPEN + +
Sbjct: 61   SDAADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNM 120

Query: 2288 NQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAF 2467
            N+RRRT  P KL+DV ++IG+LV  D+FF+AW+GP +GVDF+VDPFDGTCKFCF RDTAF
Sbjct: 121  NKRRRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAF 180

Query: 2468 SFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDS 2647
            SFKG   HAVI CDFK EF VR+I EFK YT+  Y VLLL+L S+P + YRTADDDID S
Sbjct: 181  SFKGLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQS 240

Query: 2648 VPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLR 2827
            V +D+LDDDDPWIRTTDFTP+GAIGR N YR+ +PPRHGAKLKKA+ YL+ERRV    ++
Sbjct: 241  VLFDLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIK 300

Query: 2828 WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRN 3007
             P RIQ EP F  PMSD  F IHY+++I F+ +FLVNAV+HKGI NQHQ+S+ FF+LLRN
Sbjct: 301  KPPRIQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRN 360

Query: 3008 QMKEVNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITP 3187
            Q +E+NVAALKH+ SYK PVFDA +RLK+VQEWLLR+PKL K PKRLDDIAEVRRLVITP
Sbjct: 361  QPEEINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITP 420

Query: 3188 TRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNS 3367
            T+AYCLPPEVELSNRVLR YKEVADRFLRVTFMDEGMQT+NSNV+  +VA IV+EIT N+
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENT 480

Query: 3368 FPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMG 3547
            FPQKTKV+ RI++IL NGF+LCGRKYSFLAFSSNQLRDRSAWFFAEDK I++  +K+WMG
Sbjct: 481  FPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMG 540

Query: 3548 RFTNKNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALE 3727
            RFTN+NVAKCAARMG CFSSTYA+VEVPSTQVN   PDI+RNGY FSDGIG+ITPDLA+E
Sbjct: 541  RFTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAME 600

Query: 3728 VAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSW 3907
            VA+KLKL+R+PP AYQIRY G KGVVACW P+  DG RLSLR SM+KF S+HT LEICSW
Sbjct: 601  VAEKLKLDRDPPSAYQIRYGGCKGVVACW-PSTGDGFRLSLRRSMNKFASDHTTLEICSW 659

Query: 3908 TRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGN 4087
            TR QPGFLNRQI+TLLSALNV DEIFW MQETM+ KL QML+DTD+AFDVLTASCAEQGN
Sbjct: 660  TRLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGN 719

Query: 4088 VAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 4267
             AAIMLSAGF PQ EPHLRGMLTCI+AAQLWGLREK RIFVPSGRWLMGCLDELGVLEQG
Sbjct: 720  SAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQG 779

Query: 4268 QCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDL 4447
            QCF+QVS PSLENCF+KHGSRF++ + NL+VIKGFVV+AKNPCLHPGD+RILEAVD P L
Sbjct: 780  QCFVQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGL 839

Query: 4448 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQL 4627
            HHL+DCLVFPQKG RPHT+EASGSDLDGDLYFVTWDENLIPP KKSW PM+Y+ AE K  
Sbjct: 840  HHLHDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLS 899

Query: 4628 TRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPK 4807
             R VT +D+IEFF +NMVNENLG ICNAHVVH+D SE+GA DE CLKLA+LAA AVDFPK
Sbjct: 900  GRSVTSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPK 959

Query: 4808 TGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLPS 4987
            TGKIVTMP +LKPKLYPDFMGK +YQSYKSNKILG+LYRKI DAYDEDV  SSE N +PS
Sbjct: 960  TGKIVTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVPS 1019

Query: 4988 DIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSR 5167
            D+ YD+DLEV  A+DFI DAWE+KCSYD QL GL+ QYK+ REEE+VTGH+WSMPKY+SR
Sbjct: 1020 DVKYDMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSR 1079

Query: 5168 KQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEWV 5347
            KQGEL+ERLKHSYSALKKEFRQ FEKM+  FE L DD+KN  YEQKASAWYQVTYHP+WV
Sbjct: 1080 KQGELQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWV 1139

Query: 5348 KKSLDLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            KKSLDL  PDG  D VMLSFAWIAADYL RIKI+ R V N+D  KPIN L KYL+DR+
Sbjct: 1140 KKSLDLHGPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1818 bits (4710), Expect = 0.0
 Identities = 877/1191 (73%), Positives = 1018/1191 (85%), Gaps = 1/1191 (0%)
 Frame = +2

Query: 1952 KQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI-DTAAIE 2128
            K+ VVTQVS+GGFDRHV+A+DL  +LE+E+GLV+RCRLKTS TPPESYP++ I DT  I+
Sbjct: 8    KETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQ 67

Query: 2129 RKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRLNQRRRTT 2308
            RKD+YKKVEPHAFVHFA  ++  W +DAAGR EL  N++ LKVSLGPENPY LN+RRR T
Sbjct: 68   RKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDT 127

Query: 2309 TPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAFSFKGSLN 2488
            TP KL DV ++IGTL + D+F + WRGPP GV+FLVDPFD TCKFCF+RDTAFSFKG+  
Sbjct: 128  TPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNE 187

Query: 2489 HAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDSVPYDMLD 2668
            HAVIKCDFK+EFLVR+INE KQY++ +  V+LLQL S+P +WYRTADDD + +VP+ +LD
Sbjct: 188  HAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLD 247

Query: 2669 DDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLRWPLRIQK 2848
            DDD WIRTTDFT SGAIGR N+YR+ V PRHG KLKKA+ YLRERRV  + LR  LRI+ 
Sbjct: 248  DDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRD 307

Query: 2849 EPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRNQMKEVNV 3028
            EPDF   MSD F+ I YKE I FE MFLVNAV+HKGIFNQHQ+S  FF LLRNQ  EVNV
Sbjct: 308  EPDFGRSMSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNV 366

Query: 3029 AALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITPTRAYCLP 3208
            AALKHI SY+ PV+DAY RLK V +WLL++PKLFK P +LDDI E+RRLVITPT+AYCL 
Sbjct: 367  AALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLL 426

Query: 3209 PEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNSFPQKTKV 3388
            PEVELSNRVLR YK+VADRFLRVTFMDEGMQ +N+NVLTY+ A+IVR++TS SF QKT V
Sbjct: 427  PEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGV 486

Query: 3389 FQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMGRFTNKNV 3568
            F+R+KSILT+GFYLCGRKYSFLAFS+NQLRDR+AWFFAED  INV ++  WMG+FTN+N+
Sbjct: 487  FKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTNRNI 546

Query: 3569 AKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALEVAQKLKL 3748
            AKCAARMG CFSSTYA+VEVPS QVN   PDIKRNGY FSDGIGKITPDLA+EVAQKLKL
Sbjct: 547  AKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQKLKL 606

Query: 3749 ERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSWTRFQPGF 3928
            + NPPCAYQIRYAG KGVVACW P + D  RLSLR SM KF S+HT LEICSWTRFQPGF
Sbjct: 607  DLNPPCAYQIRYAGCKGVVACW-PEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGF 665

Query: 3929 LNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGNVAAIMLS 4108
            LNRQI+TLLS L V DE+FW MQ +M+ KL+++L+DTD AF+V+ +SC EQG+  AIMLS
Sbjct: 666  LNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGHTPAIMLS 725

Query: 4109 AGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVS 4288
            AGF PQ EPHLRGMLTC+RA+QLWGLREK+RIF+ SGRWLMG LDELGVLEQGQCFIQVS
Sbjct: 726  AGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVS 785

Query: 4289 NPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDLHHLYDCL 4468
            NPSL+NCF KHGSRF E   N EVIKG VVIAKNPCLHPGD+RILEAVD P LHHLYDCL
Sbjct: 786  NPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 845

Query: 4469 VFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQLTRPVTQE 4648
            VFPQKGERPHTNEASGSDLDGDLYFVTW+E LIPPSKKS  PMQYD    ++L R VT +
Sbjct: 846  VFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHK 905

Query: 4649 DIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPKTGKIVTM 4828
            DIIEFFSKNMVNE+LG+ICNAHVVH+DLSEHGA DEKC+ LA+LAA AVDFPKTGKIV+M
Sbjct: 906  DIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSM 965

Query: 4829 PFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLPSDIPYDID 5008
            P  LKPKLYPDFMGK+E+QSYKSNKILG+LYR IKDAYD+DV+ SSE+NF  SDI YD D
Sbjct: 966  PAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINYDAD 1025

Query: 5009 LEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSRKQGELKE 5188
            LE++G++D+I DAW +KCSYDGQL GLL QYKV REEEVVTG IWSMPKY+S+K G+LKE
Sbjct: 1026 LEITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKE 1085

Query: 5189 RLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEWVKKSLDLQ 5368
            +L HSY +L+KEFRQ+FE M+ +FE+L++DEKN +YE+KASAWYQVTYHPEWV+K L+ Q
Sbjct: 1086 KLGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQ 1145

Query: 5369 EPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 5521
            +PDG    VMLSFAWIAADYL RIK+R +G  N+D  KP+N+L +YL+DR+
Sbjct: 1146 KPDGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196


>gb|KHG28504.1| RNA-dependent RNA polymerase 6 -like protein [Gossypium arboreum]
          Length = 1214

 Score = 1817 bits (4707), Expect = 0.0
 Identities = 878/1189 (73%), Positives = 1018/1189 (85%), Gaps = 4/1189 (0%)
 Frame = +2

Query: 1952 KQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI-DTAAIE 2128
            K+ VVTQVS+GGFDRHV+A+DL  +LE+E+GLV+RCRLKTS TPPESYP++ I DT  I+
Sbjct: 8    KETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQ 67

Query: 2129 RKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRLNQRRRTT 2308
            RKD+YKKVEPHAFVHFA  ++  W +DAAGR EL  N++ LKVSLGPENPY LN+RRR T
Sbjct: 68   RKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDT 127

Query: 2309 TPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAFSFKGSLN 2488
            TP KL DV ++IGTL + D+FF+ WRGPP GV+FLVDPFD T KFCF+RDTAFSFKG+  
Sbjct: 128  TPFKLPDVSLEIGTLASCDEFFVGWRGPPSGVEFLVDPFDCTGKFCFSRDTAFSFKGTNE 187

Query: 2489 HAVIKCDFKMEFLVRDINE---FKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDSVPYD 2659
            HAVIKCDFK+EFLVR+INE   +KQY++ S  V+LLQL S+P +WYRTADDD + SVP+D
Sbjct: 188  HAVIKCDFKVEFLVREINEVKQYKQYSEPSGFVVLLQLASSPWVWYRTADDDFEKSVPFD 247

Query: 2660 MLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLRWPLR 2839
            +LDDDD WIRTTDFT SGAIGR N+YR  VPPRHG+KLKKA+ YLRERRV  + L+  LR
Sbjct: 248  LLDDDDQWIRTTDFTASGAIGRCNTYRFLVPPRHGSKLKKAMVYLRERRVPVEDLKSQLR 307

Query: 2840 IQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRNQMKE 3019
            I+ EPDF   MSD F+ I YKE I FE MFLVNAV+HKGIFNQHQ+S+ FF LLRNQ  E
Sbjct: 308  IRDEPDFGRFMSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSEDFFKLLRNQSME 366

Query: 3020 VNVAALKHISSYKRPVFDAYRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITPTRAY 3199
            VNVAALKHI SY+ PV+DAY +LKVV +WLLR+PKLFK P +LDDI E+RRL ITPT+AY
Sbjct: 367  VNVAALKHIYSYRCPVYDAYEKLKVVHDWLLRNPKLFKSPPQLDDIVEIRRLAITPTKAY 426

Query: 3200 CLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNSFPQK 3379
            CL PEVELSNRVLR YK+VADRFLRVTFMDEGMQT+N+NVLTY+ A+IVR++TS SF QK
Sbjct: 427  CLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQTMNANVLTYYNAAIVRDVTSTSFSQK 486

Query: 3380 TKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFKVKSWMGRFTN 3559
            T VF+R+KSILT+GFYLCGRKYSFLAFS+NQLRDRSAWFFAED  INV ++  WMG+FTN
Sbjct: 487  TGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRSAWFFAEDGKINVLQIIGWMGKFTN 546

Query: 3560 KNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALEVAQK 3739
            +N+AKCAARMG CFSSTYA+VEVPS QVN   PDIKRNGY FSDGIGKITPDLA+EVAQK
Sbjct: 547  RNIAKCAARMGQCFSSTYAAVEVPSEQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQK 606

Query: 3740 LKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSWTRFQ 3919
            LKL+ NPPCAYQIRYAG KGVV+CW P + D  RLSLR SM KF S+HT LEICSWTRFQ
Sbjct: 607  LKLDLNPPCAYQIRYAGCKGVVSCW-PEEGDRIRLSLRTSMIKFFSHHTTLEICSWTRFQ 665

Query: 3920 PGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGNVAAI 4099
            PGFLNRQI+TLLS L V DE+FW MQ +M+ KL+++L+DTD AF+V+ +SC EQG+  AI
Sbjct: 666  PGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGHTPAI 725

Query: 4100 MLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFI 4279
            MLSAGF PQ EPHLRGMLTC+RA+QLWGLREK+RIF+ SGRWLMG LDELGVLEQGQCFI
Sbjct: 726  MLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFI 785

Query: 4280 QVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDLHHLY 4459
            QVS PSL+NCF KHGSRF E   N EVIKG VVIAKNPCLHPGD+RILEAVD P LHHLY
Sbjct: 786  QVSTPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLY 845

Query: 4460 DCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQLTRPV 4639
            DCLVFPQKGERPHTNEASGSDLDGDLYFVTW+E LIPPSKKS  PMQYD  E ++L RPV
Sbjct: 846  DCLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDPDEPRELNRPV 905

Query: 4640 TQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPKTGKI 4819
            T +DIIEFFSKNMVNE+LG+ICNAHVVH+DLSEHGA DEKC+ LA+LAA AVDFPKTGKI
Sbjct: 906  THKDIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKI 965

Query: 4820 VTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLPSDIPY 4999
            V+MP  LKPKLYPDFMGK+E+QSYKSNKILG+LYR IKDAYD+DV+ SSE+NF  SDI Y
Sbjct: 966  VSMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINY 1025

Query: 5000 DIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSRKQGE 5179
            D DLE++G++D+I DAW +KCSYDGQL GLL QYKV REEEVVTG IWSMPKY+S+K G+
Sbjct: 1026 DADLEITGSADYIADAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGD 1085

Query: 5180 LKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEWVKKSL 5359
            LKE+L HSY +++KEFRQ+FE M+ +FE+L++DEKN +YE+KASAWYQVTYHPEWV+K L
Sbjct: 1086 LKEKLGHSYGSVRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKL 1145

Query: 5360 DLQEPDGSRDAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKY 5506
            + Q+PDG    VMLSFAWIAADYL RIK+R RG  N+D  KP+N+L  +
Sbjct: 1146 EFQKPDGDEGVVMLSFAWIAADYLARIKVRHRGTENLDFAKPVNSLASW 1194