BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00002216
         (2070 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008234513.1| PREDICTED: RNA polymerase sigma factor sigA ...   747   0.0  
ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prun...   744   0.0  
ref|XP_008376946.1| PREDICTED: RNA polymerase sigma factor sigA-...   734   0.0  
ref|XP_009361126.1| PREDICTED: RNA polymerase sigma factor sigA ...   732   0.0  
gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   728   0.0  
ref|XP_008382369.1| PREDICTED: RNA polymerase sigma factor sigA-...   725   0.0  
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   724   0.0  
gb|AKC88633.1| sigma factor [Melianthus villosus]                     724   0.0  
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   724   0.0  
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g...   722   0.0  
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   716   0.0  
ref|XP_009348922.1| PREDICTED: RNA polymerase sigma factor sigA-...   710   0.0  
ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA ...   707   0.0  
ref|XP_012492333.1| PREDICTED: RNA polymerase sigma factor sigA-...   705   0.0  
ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA ...   705   0.0  
ref|XP_004307835.2| PREDICTED: RNA polymerase sigma factor sigA ...   704   0.0  
gb|KDO48034.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   704   0.0  
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   702   0.0  
ref|XP_008462812.1| PREDICTED: RNA polymerase sigma factor sigA ...   699   0.0  
gb|AKC88628.1| sigma factor [Francoa sonchifolia]                     699   0.0  

>ref|XP_008234513.1| PREDICTED: RNA polymerase sigma factor sigA [Prunus mume]
          Length = 512

 Score =  747 bits (1929), Expect = 0.0
 Identities = 398/516 (77%), Positives = 432/516 (83%), Gaps = 6/516 (1%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVNDHN-----QFASVKNVIVSRKXXXX 1583
            MMATAAVIG+STGKRLL+SS +YSDIT+K   ++NDH+      F+S KNV+ +RK    
Sbjct: 1    MMATAAVIGLSTGKRLLNSSFYYSDITEKLF-HLNDHHGFLHCHFSSTKNVVTARKPSNC 59

Query: 1582 XXXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLL 1403
                      Q  QSIRALKEHV   +   S  Q WFQE NDLEEE+S L YSVEALLLL
Sbjct: 60   SSRFPSSNRPQ--QSIRALKEHVHTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLL 117

Query: 1402 QKSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQ 1223
            QKSMLEKQWNLSFE KVL D    +      PVTCSGVSARQRRM           + V 
Sbjct: 118  QKSMLEKQWNLSFEKKVLRD-STSKTTDKKIPVTCSGVSARQRRMTSTKRKTLNKSTCVM 176

Query: 1222 -PTIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLK 1046
             P+  K L A +SPELLQNR+KGYVKGV+SE+LLTH EVVRLSKKIK+GLS+E+ KSRLK
Sbjct: 177  HPSTNKPLRAIVSPELLQNRVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLK 236

Query: 1045 ERLGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 866
            ERLGCEPSDEQLA SL ISR++LQSKLIE  LAREKLAMSNVRLVMSIAQRYDNMGAEMA
Sbjct: 237  ERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMA 296

Query: 865  DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSL 686
            DL+QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL L
Sbjct: 297  DLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 356

Query: 685  IRNAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETH 506
            IRNAK+RLEEKGITPSIDRIAE LNMSKKKVRNATEAISKVFSLDR+AFPSLNGLPGETH
Sbjct: 357  IRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETH 416

Query: 505  HSYIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISK 326
            HSYI DNRLENIPWHGVDAWALK+EVSKLI+  LGEREREII+LYYGL+NECLTWEDISK
Sbjct: 417  HSYIADNRLENIPWHGVDAWALKEEVSKLINMMLGEREREIIQLYYGLENECLTWEDISK 476

Query: 325  RIGLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            RIGLSRERVRQVGLVALEKLKH ARK+ MEA+L+KH
Sbjct: 477  RIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 512


>ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
            gi|462415485|gb|EMJ20222.1| hypothetical protein
            PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  744 bits (1922), Expect = 0.0
 Identities = 396/516 (76%), Positives = 431/516 (83%), Gaps = 6/516 (1%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVNDHN-----QFASVKNVIVSRKXXXX 1583
            MMATAAVIG+STGKRLL+SS +YSDIT+K   ++NDH+      F+S KNV+ +RK    
Sbjct: 1    MMATAAVIGLSTGKRLLNSSFYYSDITEKLF-HLNDHHGFLHCHFSSTKNVVTARKPSNC 59

Query: 1582 XXXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLL 1403
                      Q  QSIRALKEHV   +   S  Q WFQE NDLEEE+S L YSVEALLLL
Sbjct: 60   SSRFPSSNRPQ--QSIRALKEHVQTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLL 117

Query: 1402 QKSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQ 1223
            QKSMLEKQWNLSFE KVL D    +      PVTCSGVSARQRRM           + V 
Sbjct: 118  QKSMLEKQWNLSFEKKVLRD-STSKTTDKKIPVTCSGVSARQRRMTSTKRKTFNKSTCVM 176

Query: 1222 -PTIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLK 1046
             P+  K L A +SPELLQN +KGYVKGV+SE+LLTH EVVRLSKKIK+GLS+E+ KSRLK
Sbjct: 177  HPSTNKPLRAIVSPELLQNHVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLK 236

Query: 1045 ERLGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 866
            ERLGCEPSDEQLA SL ISR++LQSKLIE  LAREKLAMSNVRLVMSIAQRYDNMGAEMA
Sbjct: 237  ERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMA 296

Query: 865  DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSL 686
            DL+QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL L
Sbjct: 297  DLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 356

Query: 685  IRNAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETH 506
            IRNAK+RLEEKGITPSIDRIAE LNMSKKKVRNATEAISKVFSLDR+AFPSLNGLPGETH
Sbjct: 357  IRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETH 416

Query: 505  HSYIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISK 326
            HSYI DNRLENIPWHGVDAWALK+EVSKLI+  LGERE+EII+LYYGL+NECLTWEDISK
Sbjct: 417  HSYIADNRLENIPWHGVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWEDISK 476

Query: 325  RIGLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            RIGLSRERVRQVGLVALEKLKH ARK+ MEA+L+KH
Sbjct: 477  RIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 512


>ref|XP_008376946.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Malus
            domestica]
          Length = 515

 Score =  734 bits (1894), Expect = 0.0
 Identities = 389/516 (75%), Positives = 425/516 (82%), Gaps = 6/516 (1%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSS--FYSDITDKFSSYVNDHN----QFASVKNVIVSRKXXX 1586
            MMA AAVIG++TGKRLLSSSS  +YSD+T+K   ++NDH      F+S KN++ +RK   
Sbjct: 1    MMAIAAVIGLTTGKRLLSSSSSSYYSDVTEKLF-HLNDHAFLHCHFSSTKNLVTARKSNS 59

Query: 1585 XXXXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLL 1406
                     + +   S RALK+ V   +   STAQ WF + NDLEEE+S L YSV+ALLL
Sbjct: 60   NYTSSRFSSSNRADHSSRALKDQVDAASAPSSTAQQWFHDFNDLEEESSDLEYSVDALLL 119

Query: 1405 LQKSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFV 1226
            LQKSMLEKQWNLSFE K+ +D       +   PVTCSGVSAR RRM              
Sbjct: 120  LQKSMLEKQWNLSFEKKIFTDSTIKTATNKRIPVTCSGVSARHRRMSYRRNAFNLNRCLT 179

Query: 1225 QPTIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLK 1046
            QP+    L   ISPELLQ+RLKGYVKGV+SE+LLTH EVVRLSKKIKIGLS+E+ KSRLK
Sbjct: 180  QPSTNNSLRPVISPELLQSRLKGYVKGVLSEDLLTHTEVVRLSKKIKIGLSVEEHKSRLK 239

Query: 1045 ERLGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 866
            ERLGCEPSDEQLA SL ISR+EL+SKLIE SLAREKLAMSNVRLVMSIAQ+YDNMGAEMA
Sbjct: 240  ERLGCEPSDEQLATSLRISRAELKSKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAEMA 299

Query: 865  DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSL 686
            DL+QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS+TLRLPTHLHERL L
Sbjct: 300  DLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSKTLRLPTHLHERLGL 359

Query: 685  IRNAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETH 506
            IRNAK+RLEEKGITPSIDRIAE LNMSKKKVRNATEAISKVFSLDR+AFPSLNGLPGETH
Sbjct: 360  IRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETH 419

Query: 505  HSYIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISK 326
            HSYI DNRLENIPW GVDAWALKDEV+KLI+  LGEREREIIRLYYGLDNECLTWEDISK
Sbjct: 420  HSYIADNRLENIPWTGVDAWALKDEVNKLINMMLGEREREIIRLYYGLDNECLTWEDISK 479

Query: 325  RIGLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            RIGLSRERVRQVGLVALEKLKH ARK  MEALLVKH
Sbjct: 480  RIGLSRERVRQVGLVALEKLKHAARKTEMEALLVKH 515


>ref|XP_009361126.1| PREDICTED: RNA polymerase sigma factor sigA isoform X1 [Pyrus x
            bretschneideri]
          Length = 514

 Score =  732 bits (1890), Expect = 0.0
 Identities = 387/515 (75%), Positives = 426/515 (82%), Gaps = 5/515 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLL-SSSSFYSDITDKFSSYVNDHN----QFASVKNVIVSRKXXXX 1583
            MMA AAVIG++TGKRLL SSSS+YSD+T+K   ++NDH      F+S +N++ +RK    
Sbjct: 1    MMAIAAVIGLTTGKRLLNSSSSYYSDVTEKLF-HLNDHAFLHCHFSSTRNLVTARKSNSN 59

Query: 1582 XXXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLL 1403
                    + +   S +ALK+ V   +   STAQ WF + NDLE E+S L YSV+ALLLL
Sbjct: 60   YTSSRFSSSNRADHSSKALKDQVNAASAPSSTAQQWFHDFNDLEGESSDLEYSVDALLLL 119

Query: 1402 QKSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQ 1223
            QKSMLEKQWNLSFE K+ +D       +   PVTCSGVSAR RRM              Q
Sbjct: 120  QKSMLEKQWNLSFEKKIFTDSTIKTATNKRIPVTCSGVSARHRRMSNRRNAFSLNRCLTQ 179

Query: 1222 PTIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKE 1043
            P+  K L   ISPELLQ+RLKGYVKGV+SE+LLTH EVVRLSKKIKIGLS+E+ KSRLKE
Sbjct: 180  PSTNKSLRPVISPELLQSRLKGYVKGVLSEDLLTHTEVVRLSKKIKIGLSVEEHKSRLKE 239

Query: 1042 RLGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD 863
            RLGCEPSDEQLA SL ISR+EL+SKLIE SLAREKLAMSNVRLVMSIAQ+YDNMGAEMAD
Sbjct: 240  RLGCEPSDEQLATSLRISRAELKSKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAEMAD 299

Query: 862  LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI 683
            L+QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS+TLRLPTHLHERL LI
Sbjct: 300  LIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSKTLRLPTHLHERLGLI 359

Query: 682  RNAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHH 503
            RNAK+RLEEKGITPSIDRIAE LNMSKKKVRNATEAISKVFSLDR+AFPSLNGLPGETHH
Sbjct: 360  RNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHH 419

Query: 502  SYIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKR 323
            SYI DNRLENIPW+GVDAWALKDEV+KLI+  LGEREREIIRLYYGLDNECLTWEDISKR
Sbjct: 420  SYIADNRLENIPWNGVDAWALKDEVNKLINMMLGEREREIIRLYYGLDNECLTWEDISKR 479

Query: 322  IGLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            IGLSRERVRQVGLVALEKLKH ARK  MEALLVKH
Sbjct: 480  IGLSRERVRQVGLVALEKLKHAARKTEMEALLVKH 514


>gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
            gi|641828897|gb|KDO48033.1| hypothetical protein
            CISIN_1g010521mg [Citrus sinensis]
          Length = 508

 Score =  728 bits (1879), Expect = 0.0
 Identities = 392/514 (76%), Positives = 426/514 (82%), Gaps = 4/514 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVND----HNQFASVKNVIVSRKXXXXX 1580
            MMATAAVIG+S GKRLLSSS +YSDI++KFS Y+ND    ++Q  S KNV+ ++K     
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFS-YINDLGSANSQVGSTKNVVAAKKSSNYN 59

Query: 1579 XXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQ 1400
                    Q   Q I+ALKEHV DT    STA+PW +  N +EEE+S L YSVEALLLLQ
Sbjct: 60   PSFPSSNRQT--QPIKALKEHV-DTNF-ASTAEPWAEPPNSIEEESSELDYSVEALLLLQ 115

Query: 1399 KSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQP 1220
            KSMLEKQWNLSFE  VL+D P  +K     PVTCSGVSARQRR+           S +Q 
Sbjct: 116  KSMLEKQWNLSFERTVLTDSP-SKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQ 174

Query: 1219 TIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKER 1040
              +K L + ISPEL+QNRLKGYVKGV+SEELLTHAEVVRLSKKIK GLSL+  K RLKER
Sbjct: 175  NGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER 234

Query: 1039 LGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 860
            LGCEPS EQLAASL ISR ELQS L+E SLAREKL MSNVRLVMSIAQRYDNMGA+MADL
Sbjct: 235  LGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 294

Query: 859  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 680
            VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIR
Sbjct: 295  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIR 354

Query: 679  NAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 500
            NAK+RLEEKG+TPS+DRIAE LNMS+KKVRNATEAI KVFSLDREAFPSLNGLPGETHHS
Sbjct: 355  NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHS 414

Query: 499  YIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRI 320
            YI DNR+EN PWHGVD WALKDEV+KLI  TLGEREREIIRLYYGLD ECLTWEDISKRI
Sbjct: 415  YIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRI 474

Query: 319  GLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            GLSRERVRQVGLVALEKLKH ARKK+MEA+LVKH
Sbjct: 475  GLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_008382369.1| PREDICTED: RNA polymerase sigma factor sigA-like [Malus domestica]
          Length = 514

 Score =  725 bits (1872), Expect = 0.0
 Identities = 389/516 (75%), Positives = 425/516 (82%), Gaps = 6/516 (1%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFY-SDITDKFSSYVNDHN----QFASVKNVIVSRKXXXX 1583
            MMATAA+IG++TGK LL+SSS Y SDIT+K   ++NDH      F+S KN++ +RK    
Sbjct: 1    MMATAAIIGLATGKMLLNSSSSYNSDITEKLF-HLNDHAFLHCHFSSTKNLVTARKSNSN 59

Query: 1582 XXXXXXXXNQQERQSIRALKEHVVDTAIDPS-TAQPWFQESNDLEEEASHLGYSVEALLL 1406
                    + +  +S RALKEHV D A  PS TAQ WF   NDLEEE+S L YSV+ALLL
Sbjct: 60   YTSSRFPSSNRPDRSSRALKEHV-DAAFGPSSTAQQWFHSFNDLEEESSDLEYSVDALLL 118

Query: 1405 LQKSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFV 1226
            LQKSMLEKQWNLSFE KV  D       +   PVTCSGVSAR RRM              
Sbjct: 119  LQKSMLEKQWNLSFEKKVFMDSTIKTATNKRIPVTCSGVSARHRRMSTRRNAFSANRCLT 178

Query: 1225 QPTIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLK 1046
            QP+  K L   +SPELLQNRLKGYVKGV+SE+LLTH EVVRLSKKIKIGLS+E+ KSRLK
Sbjct: 179  QPSTNKPLRPVMSPELLQNRLKGYVKGVLSEDLLTHTEVVRLSKKIKIGLSVEEHKSRLK 238

Query: 1045 ERLGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 866
            ERLGCEPSD+QLA SL ISR+EL SKLIE SLAREKLAMSNVRLVMSIAQ+YDNMGAEMA
Sbjct: 239  ERLGCEPSDKQLATSLRISRTELLSKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAEMA 298

Query: 865  DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSL 686
            DL+QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS+TLRLPTHLHERL L
Sbjct: 299  DLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSKTLRLPTHLHERLGL 358

Query: 685  IRNAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETH 506
            IRNAK+RLEEKGITPSIDRIAE LNMS+KKVRNATEAI KVFSLDR+AFPSLNGLPGETH
Sbjct: 359  IRNAKIRLEEKGITPSIDRIAESLNMSRKKVRNATEAIGKVFSLDRDAFPSLNGLPGETH 418

Query: 505  HSYIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISK 326
            HSYI DNRLEN+PW+GVDA ALKDEV+KLI+  LG+REREIIRLYYGLDNECLTWEDISK
Sbjct: 419  HSYIADNRLENVPWNGVDALALKDEVNKLINMMLGDREREIIRLYYGLDNECLTWEDISK 478

Query: 325  RIGLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            RIGLSRERVRQVGLVALEKLKH ARK  MEALLVKH
Sbjct: 479  RIGLSRERVRQVGLVALEKLKHGARKNEMEALLVKH 514


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  724 bits (1870), Expect = 0.0
 Identities = 391/514 (76%), Positives = 424/514 (82%), Gaps = 4/514 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVND----HNQFASVKNVIVSRKXXXXX 1580
            MMATAAVIG+S GKRLLSSS +YSDI++KFS Y+ND    ++Q  S KNV+ ++K     
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFS-YINDLGSANSQVGSTKNVVAAKKSSNYN 59

Query: 1579 XXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQ 1400
                    Q   Q I+ALKEHV DT    STA+PW +  N +EEE+S L YSVEALLLLQ
Sbjct: 60   PSFPSSNRQT--QPIKALKEHV-DTNF-ASTAEPWAEPPNSIEEESSELDYSVEALLLLQ 115

Query: 1399 KSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQP 1220
            KSMLEKQWNLSFE  VL+D P  +K     PVTCSGVSARQRR+           S  Q 
Sbjct: 116  KSMLEKQWNLSFERTVLTDSP-SKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVPQQ 174

Query: 1219 TIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKER 1040
              +K L + ISPEL+QN LKGYVKGV+SEELLTHAEVVRLSKKIK GLSL+  K RLKER
Sbjct: 175  NGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER 234

Query: 1039 LGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 860
            LGCEPS EQLAASL ISR ELQS L+E SLAREKL MSNVRLVMSIAQRYDNMGA+MADL
Sbjct: 235  LGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 294

Query: 859  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 680
            VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIR
Sbjct: 295  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIR 354

Query: 679  NAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 500
            NAK+RLEEKG+TPS+DRIAE LNMS+KKVRNATEAI KVFSLDREAFPSLNGLPGETHHS
Sbjct: 355  NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHS 414

Query: 499  YIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRI 320
            YI DNR+EN PWHGVD WALKDEV+KLI  TLGEREREIIRLYYGLD ECLTWEDISKRI
Sbjct: 415  YIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRI 474

Query: 319  GLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            GLSRERVRQVGLVALEKLKH ARKK+MEA+LVKH
Sbjct: 475  GLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>gb|AKC88633.1| sigma factor [Melianthus villosus]
          Length = 506

 Score =  724 bits (1869), Expect = 0.0
 Identities = 380/511 (74%), Positives = 424/511 (82%), Gaps = 2/511 (0%)
 Frame = -3

Query: 1744 MATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVNDHNQFASV--KNVIVSRKXXXXXXXX 1571
            MATAAVIG+S GKRLLSSS +YSD  +K S Y NDH  + +   K V++++K        
Sbjct: 1    MATAAVIGLSAGKRLLSSSLYYSDYAEKLS-YANDHGHYNATPTKTVVIAKKSSNCSPRF 59

Query: 1570 XXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQKSM 1391
                  ++ QSI+ALKEHV D +  PSTA+ WFQ SND++E+   + YSVEALLLLQKSM
Sbjct: 60   PSS--NRKTQSIKALKEHVDDIS-GPSTAESWFQRSNDVDEQNFDIEYSVEALLLLQKSM 116

Query: 1390 LEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQPTIA 1211
            LEKQWNLSF+  +L+DL + EK     PVTCSGVSARQRRM           S +Q +  
Sbjct: 117  LEKQWNLSFDKTMLTDLVK-EKTCKRIPVTCSGVSARQRRMSNKRKILSENSSMMQTSRC 175

Query: 1210 KHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKERLGC 1031
              L   I PEL+QNR KGYVKGV+SEELL+HAEVV LSKKIK GLSLE+ K RLK+RLGC
Sbjct: 176  NRLRTIIGPELMQNRFKGYVKGVVSEELLSHAEVVHLSKKIKCGLSLEEHKLRLKKRLGC 235

Query: 1030 EPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQG 851
            EPSDEQLA SL ISR+EL+SK IES LAREKLAMSNVRLVMSIAQRYDNMGAEM+DLVQG
Sbjct: 236  EPSDEQLATSLRISRAELRSKWIESGLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQG 295

Query: 850  GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAK 671
            GLIGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL+ENSRTLRLPTHLHERL LIRNAK
Sbjct: 296  GLIGLLRGIEKFDSAKGFKISTYVYWWIRQGVSRALIENSRTLRLPTHLHERLGLIRNAK 355

Query: 670  VRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIP 491
            +RLEEKGITPSI+R+AECLNMSKKK+RNATEAISKVFSLDREAFPSLNGLPGETHHSYI 
Sbjct: 356  IRLEEKGITPSIERLAECLNMSKKKIRNATEAISKVFSLDREAFPSLNGLPGETHHSYIA 415

Query: 490  DNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRIGLS 311
            DN L+N PWHGVD WALKDEV KLI+ TLGEREREIIRLY+GLDNECLTWEDISKRIGLS
Sbjct: 416  DNCLDNNPWHGVDEWALKDEVKKLIEMTLGEREREIIRLYHGLDNECLTWEDISKRIGLS 475

Query: 310  RERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            RERVRQVGLVA+EKLKH AR+K MEA+LVKH
Sbjct: 476  RERVRQVGLVAMEKLKHAARRKHMEAMLVKH 506


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  724 bits (1869), Expect = 0.0
 Identities = 389/514 (75%), Positives = 425/514 (82%), Gaps = 4/514 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVND----HNQFASVKNVIVSRKXXXXX 1580
            MMATAAVIG+S GKRLLSSS +YSDI++KFS Y+ND    ++Q  S KNV+ ++K     
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFS-YINDLGSANSQVGSTKNVVAAKKSSNYN 59

Query: 1579 XXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQ 1400
                    Q   Q I+ALKEHV DT    STA+PW +  N +EEE+S L YSVEALLLLQ
Sbjct: 60   PSFPSSNRQT--QPIKALKEHV-DTNF-ASTAEPWAEPPNSIEEESSELDYSVEALLLLQ 115

Query: 1399 KSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQP 1220
            KSMLEKQWNLSFE  VL+D P  +K     PVTCSGVSARQRR+           S +Q 
Sbjct: 116  KSMLEKQWNLSFERTVLTDSP-SKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVLQQ 174

Query: 1219 TIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKER 1040
              +K L + ISPEL+QN LKGYVKGV+SEELLTHAEVVRLSKKIK GLSL+  K RLKER
Sbjct: 175  NGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER 234

Query: 1039 LGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 860
            LGCEPS EQLAASL ISR ELQS L+E SLAREKL MSNVRLVMSIAQRYDNMGA+MADL
Sbjct: 235  LGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 294

Query: 859  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 680
            +QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIR
Sbjct: 295  IQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIR 354

Query: 679  NAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 500
            NAK+RLEEKG+TP++DRIAE LNMS+KKVRNATEAI KVFSLDREAFPSLNGLPGETHHS
Sbjct: 355  NAKLRLEEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHS 414

Query: 499  YIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRI 320
            YI DNR+EN PWHGVD WALKDEV+KLI  TLGEREREIIRLYYGLD ECLTWEDISKRI
Sbjct: 415  YIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRI 474

Query: 319  GLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            GLSRERVRQVGLVALEKLKH ARKK+MEA+LVKH
Sbjct: 475  GLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
            gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
            [Theobroma cacao]
          Length = 508

 Score =  722 bits (1864), Expect = 0.0
 Identities = 390/514 (75%), Positives = 429/514 (83%), Gaps = 4/514 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVND----HNQFASVKNVIVSRKXXXXX 1580
            MMATAAVIG++TGKRLLSSS  YSDI +K S Y ND    H+Q +S K++IV++K     
Sbjct: 1    MMATAAVIGLTTGKRLLSSSFSYSDIIEKLS-YANDYGSSHHQTSSTKSLIVAKKSSNCS 59

Query: 1579 XXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQ 1400
                     +  QSI+ALKEHV D+A   STA+P FQ SNDLE E+  L YSVEALLLLQ
Sbjct: 60   QSLPSS--NRRAQSIKALKEHV-DSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQ 116

Query: 1399 KSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQP 1220
            KSMLEKQW LSFE  V ++ P   K     PVTCSGVSARQRR            S +QP
Sbjct: 117  KSMLEKQWTLSFERTVFTESP-SRKIHKKIPVTCSGVSARQRRFNTKRKILIQNKSIIQP 175

Query: 1219 TIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKER 1040
              AK L + ISPELLQ+RLKGYVKGV+S+ELL+HAEVVRLSKKIK GLSLE+ + RLKER
Sbjct: 176  N-AKQLRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKER 234

Query: 1039 LGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 860
            LGCEPSDEQLA SL ISR+EL+SKLIE SLAREKLAMSNVRLVMSIAQRYDNMGAEM+DL
Sbjct: 235  LGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDL 294

Query: 859  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 680
            +QGGLIGLLRGIEKFDSSKG+KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL LIR
Sbjct: 295  IQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIR 354

Query: 679  NAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 500
            NAK+RLEEKGITP+IDRIAE LNMS+KKVRNATEA+SKVFSLDR+AFPSLNGLPGETHHS
Sbjct: 355  NAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHS 414

Query: 499  YIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRI 320
            YI DN +ENIPWHGVD WALKDEV++LI  TLGEREREIIRLYYGLD E LTWEDISKRI
Sbjct: 415  YIADNHVENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWEDISKRI 474

Query: 319  GLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            GLSRERVRQVGLVALEKLKH ARKK+MEA+LVKH
Sbjct: 475  GLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  716 bits (1848), Expect = 0.0
 Identities = 385/513 (75%), Positives = 422/513 (82%), Gaps = 4/513 (0%)
 Frame = -3

Query: 1744 MATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVNDHN----QFASVKNVIVSRKXXXXXX 1577
            MATAAVIG+S GKRLLSS+ +YSD+T+K SS  N+H     Q  S K +IV++K      
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSS-ANEHGLTHYQITSTKTLIVAKKSSNYGP 59

Query: 1576 XXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQK 1397
                    +  QSI+ALKEHV DTA  PSTA   F+  ND+EEE+S L YSVEALLLLQK
Sbjct: 60   SFPSS--NRNTQSIKALKEHV-DTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQK 116

Query: 1396 SMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQPT 1217
            SMLEKQWNLSFE    SD P   K+    PVTCSGVSARQRR+             VQ  
Sbjct: 117  SMLEKQWNLSFERTDSSDSP-SRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQAN 175

Query: 1216 IAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKERL 1037
            + K L + +SPELLQNRLKGYVKGV+SEELL+HAEVVRLS+ IK GLSLE  KSRLKERL
Sbjct: 176  VFKQLKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERL 235

Query: 1036 GCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 857
            GC+PSDEQ+A SL ISR+ELQSK I  SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV
Sbjct: 236  GCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 295

Query: 856  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRN 677
            QGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRN
Sbjct: 296  QGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN 355

Query: 676  AKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSY 497
            AK+RLEEKG+TPSIDRIAE LN+S+KKVRNATEA+SKVFSLDREAFPSLNGLPGETHHSY
Sbjct: 356  AKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSY 415

Query: 496  IPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRIG 317
            I DN LEN PWHGVD WALKDEV+KLI+ TL ERE+EIIRLYYGLDNE LTWEDISKRIG
Sbjct: 416  IADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIG 475

Query: 316  LSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            LSRERVRQVGLVALEKLKH ARKK++EA+LVKH
Sbjct: 476  LSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_009348922.1| PREDICTED: RNA polymerase sigma factor sigA-like [Pyrus x
            bretschneideri]
          Length = 514

 Score =  710 bits (1833), Expect = 0.0
 Identities = 381/515 (73%), Positives = 417/515 (80%), Gaps = 5/515 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFY-SDITDKFSSYVNDHN----QFASVKNVIVSRKXXXX 1583
            MMA AAVIG++TGK LL+SSS Y SDIT+K   ++NDH      F+S KN++ +RK    
Sbjct: 1    MMAIAAVIGLTTGKMLLNSSSSYNSDITEKLF-HLNDHAFLHCHFSSTKNLVTARKSNSN 59

Query: 1582 XXXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLL 1403
                    + +   S RA KEHV   +   STAQ WF   NDLEEE+S L YSV+ALLLL
Sbjct: 60   YTSSRFASSNRPDHSSRAFKEHVDAASGPSSTAQQWFHSFNDLEEESSDLEYSVDALLLL 119

Query: 1402 QKSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQ 1223
            QKSMLEKQWNLSFE KV  D       +   PVTCSGVSAR RRM              Q
Sbjct: 120  QKSMLEKQWNLSFERKVFMDSTIKTATNKRIPVTCSGVSARHRRMSTRRNAFSANRCLTQ 179

Query: 1222 PTIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKE 1043
            P+  K L   +SPELLQNRLKGYVKGV+SE+LLTH EVVRLS+KIKIGLS+E+ KSRLKE
Sbjct: 180  PSTNKPLRPVMSPELLQNRLKGYVKGVLSEDLLTHTEVVRLSRKIKIGLSVEEHKSRLKE 239

Query: 1042 RLGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD 863
            RLGCEPSD+QLA SL ISR+EL SKLIE SLAREKLAMSNVRLVMSIAQ+YDNMGAEMAD
Sbjct: 240  RLGCEPSDKQLATSLRISRTELLSKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAEMAD 299

Query: 862  LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI 683
            L+QGG IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS+TLRLPTHLHERL LI
Sbjct: 300  LIQGGFIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSKTLRLPTHLHERLGLI 359

Query: 682  RNAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHH 503
            RNAK+RLEEKGI PSIDRIAE LNMS+KKVRNATEAISKV SLDR+AFPSLNGLPGETHH
Sbjct: 360  RNAKIRLEEKGIAPSIDRIAESLNMSRKKVRNATEAISKVLSLDRDAFPSLNGLPGETHH 419

Query: 502  SYIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKR 323
            SYI DNRLEN+PW+GVDA ALKDEV+KLI+  LG+REREIIRLYYGLDNE LTWEDISKR
Sbjct: 420  SYIADNRLENVPWNGVDALALKDEVNKLINMMLGDREREIIRLYYGLDNEGLTWEDISKR 479

Query: 322  IGLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            IGLSRERVRQVGLVALEKLKH ARK  MEALLVKH
Sbjct: 480  IGLSRERVRQVGLVALEKLKHGARKNEMEALLVKH 514


>ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA [Jatropha curcas]
            gi|802585167|ref|XP_012070279.1| PREDICTED: RNA
            polymerase sigma factor sigA [Jatropha curcas]
            gi|643732469|gb|KDP39565.1| hypothetical protein
            JCGZ_02585 [Jatropha curcas]
          Length = 508

 Score =  707 bits (1824), Expect = 0.0
 Identities = 382/513 (74%), Positives = 420/513 (81%), Gaps = 4/513 (0%)
 Frame = -3

Query: 1744 MATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVNDHN----QFASVKNVIVSRKXXXXXX 1577
            MATAAVIG+  GKRLLSS+ +YSD+T+K  + VNDH     Q +S KNVIV++K      
Sbjct: 1    MATAAVIGLHAGKRLLSSTFYYSDLTEKLFN-VNDHGLTHYQSSSTKNVIVAKKSSNYGS 59

Query: 1576 XXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQK 1397
                    +  QSI+ALKEHV DTA  PSTA   F+   D+EE +S L YSVEALLLLQK
Sbjct: 60   SFQSS--NRNAQSIKALKEHV-DTASSPSTAATGFETFVDIEEASSDLDYSVEALLLLQK 116

Query: 1396 SMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQPT 1217
            SMLEKQWNLSFE    SD P   K+    P+TCSG+SARQRR+           S VQ +
Sbjct: 117  SMLEKQWNLSFERTASSDSP-STKSQKQIPITCSGLSARQRRINTRRKNLIQSKSIVQAS 175

Query: 1216 IAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKERL 1037
              K L + +SPELL NRLKGYVKG++SEELLTHAEVV LS+ IK GLSLE+ KSRLK+RL
Sbjct: 176  GFKQLKSAVSPELLLNRLKGYVKGIVSEELLTHAEVVSLSRIIKAGLSLEEHKSRLKDRL 235

Query: 1036 GCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 857
            GC+PSDEQLA SL IS ++L+SKLI  SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV
Sbjct: 236  GCDPSDEQLATSLRISLADLRSKLIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 295

Query: 856  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRN 677
            QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRN
Sbjct: 296  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN 355

Query: 676  AKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSY 497
            AK+RLEEKG+TPSIDRIAE LNMS+KKVRNATEAISKVFSLDREAFPSLNGLPGETHHSY
Sbjct: 356  AKIRLEEKGVTPSIDRIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSY 415

Query: 496  IPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRIG 317
            I DN  EN PWHGVD WALKDEV+KLID TL +REREIIRLYYGLDNE LTWEDISKRIG
Sbjct: 416  IADNCPENNPWHGVDEWALKDEVNKLIDLTLQQREREIIRLYYGLDNETLTWEDISKRIG 475

Query: 316  LSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            LSRERVRQVGLVALEKLKH ARKK++EA+LVKH
Sbjct: 476  LSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_012492333.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X2
            [Gossypium raimondii] gi|763777227|gb|KJB44350.1|
            hypothetical protein B456_007G247500 [Gossypium
            raimondii]
          Length = 508

 Score =  705 bits (1820), Expect = 0.0
 Identities = 375/513 (73%), Positives = 420/513 (81%), Gaps = 3/513 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFS---SYVNDHNQFASVKNVIVSRKXXXXXX 1577
            MMATAAVIG+STGKRLLSSS  YS+  DK S    Y + + Q  S K ++V+++      
Sbjct: 1    MMATAAVIGLSTGKRLLSSSFSYSETVDKLSYAGDYGSSYYQTPSTKTLMVAKRSSNCSQ 60

Query: 1576 XXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQK 1397
                    +  QSI+A KEHV DTA   ST +PW   +NDLE+E+  L YSVEALLLLQK
Sbjct: 61   NLPSS--NRHTQSIKAFKEHV-DTASSISTVEPWIHGTNDLEQESYDLDYSVEALLLLQK 117

Query: 1396 SMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQPT 1217
            SMLEKQW LSFE  + ++ P   K  N  PVTCSGVSARQRR            S +QP 
Sbjct: 118  SMLEKQWTLSFERTMFTESP-SRKTHNKVPVTCSGVSARQRRFSTKRKILSQNKSMIQPN 176

Query: 1216 IAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKERL 1037
             AK L + I PELLQNRLKGYVKGV+SE+LL+HAEVVRLS+KIK GLSLE+ + RLKERL
Sbjct: 177  -AKQLRSLIGPELLQNRLKGYVKGVVSEDLLSHAEVVRLSRKIKAGLSLEEHRLRLKERL 235

Query: 1036 GCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 857
            GCEPSDEQLA SL +SR+EL+S+ IE SLAREKLAMSNVRLVMSIAQRYDNMGAEM+DL+
Sbjct: 236  GCEPSDEQLATSLKVSRAELRSRSIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLI 295

Query: 856  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRN 677
            QGGLIGLLRGIEKFDSSKG+KISTYVYWWIRQGVSRALVENSRTLRLPT+LHERL LIRN
Sbjct: 296  QGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRN 355

Query: 676  AKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSY 497
            AK RLEEKGITP+IDRIAE LNMS+KKVRNATEA+SKVFSLDR+AFPSLNGLPGETHHSY
Sbjct: 356  AKYRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSY 415

Query: 496  IPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRIG 317
            I DN +EN PWHGVD WALKDEV++LI+ TLGEREREIIRLY+GLD E LTWEDISKRIG
Sbjct: 416  IADNHVENNPWHGVDEWALKDEVNRLINITLGEREREIIRLYHGLDKESLTWEDISKRIG 475

Query: 316  LSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            LSRERVRQVGLVALEKLKH ARKK+MEA+LVKH
Sbjct: 476  LSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA [Populus euphratica]
            gi|743936142|ref|XP_011012458.1| PREDICTED: RNA
            polymerase sigma factor sigA [Populus euphratica]
          Length = 509

 Score =  705 bits (1820), Expect = 0.0
 Identities = 377/514 (73%), Positives = 420/514 (81%), Gaps = 4/514 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVNDHN----QFASVKNVIVSRKXXXXX 1580
            MMATAAVIG+STGKRLLSSS +YSD+T+K SS VNDH       A+ KNV+V++K     
Sbjct: 1    MMATAAVIGLSTGKRLLSSSFYYSDLTEKLSS-VNDHGITYCPTATTKNVVVAKKSSNYG 59

Query: 1579 XXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQ 1400
                     +   SI+ALKEHV DTA   S    WF+  +D EEE+S L YSVEALLLLQ
Sbjct: 60   PNFPSS--NRNSHSIKALKEHV-DTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQ 116

Query: 1399 KSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQP 1220
            KSMLEKQWNLSFE    SD    +KN+   PVTCSGVSARQRR+              Q 
Sbjct: 117  KSMLEKQWNLSFERTNSSD-STSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQS 175

Query: 1219 TIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKER 1040
            +  K L + ISP+LLQNRLKGYVKGV+S+E+L H EVVRLS+ I+ GLS E  KSRLKER
Sbjct: 176  SDFKFLRSVISPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKER 235

Query: 1039 LGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 860
            LGCEPSDEQ+A SL ISR++LQ+KLI+ SLAREKLAMSNVRLVMSIAQ+YDNMGAEMADL
Sbjct: 236  LGCEPSDEQIADSLRISRADLQAKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADL 295

Query: 859  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 680
            VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL LIR
Sbjct: 296  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIR 355

Query: 679  NAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 500
            NAK+RLEEKG+TPSIDRIAE LNMS++KVRNATEAISKVFSLDREAFPSLNGLPGETHHS
Sbjct: 356  NAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 415

Query: 499  YIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRI 320
            YI DNR EN PWHGVD WALK+EV+KLID+TL ERE+EIIRLY+GLD ECLTWEDISKR+
Sbjct: 416  YIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRM 475

Query: 319  GLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            GLSRERVRQVGLVALEKLKH ARK+  EA+LVKH
Sbjct: 476  GLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_004307835.2| PREDICTED: RNA polymerase sigma factor sigA [Fragaria vesca subsp.
            vesca]
          Length = 512

 Score =  704 bits (1817), Expect = 0.0
 Identities = 386/517 (74%), Positives = 418/517 (80%), Gaps = 7/517 (1%)
 Frame = -3

Query: 1747 MMATAA-VIGVS-TGKRLLSSSSFYSDITDKFSSYVNDHN----QFASVKNVIVSRKXXX 1586
            MMATAA V+G+S TGKRLLSSS  YSDITDK   Y+NDH     Q +S KNV+ +RK   
Sbjct: 1    MMATAAAVVGLSSTGKRLLSSSLSYSDITDKLF-YLNDHGFVNCQLSSTKNVVTARKSSS 59

Query: 1585 XXXXXXXXXNQQER-QSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALL 1409
                     + +   QSIRAL+EH    +   ST     +E  DLEEE+S L YSVEALL
Sbjct: 60   KYSNSRFPSSNRHHEQSIRALQEHADTASAPSSTTHQLLEEYTDLEEESSDLEYSVEALL 119

Query: 1408 LLQKSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSF 1229
            LLQKS+LEKQWNLSFE K    L   +   N  PVTCSGVSARQRRM           S 
Sbjct: 120  LLQKSLLEKQWNLSFEKK----LSTRKITDNKIPVTCSGVSARQRRMSTKRKAFSKNTSE 175

Query: 1228 VQPTIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRL 1049
            +QP+  K+  ATISP LLQNR  GYVKGV S+ LLTH EVVRLSKKIKIGLS+E+ KSRL
Sbjct: 176  LQPSTNKYCRATISPSLLQNRTSGYVKGVTSDHLLTHTEVVRLSKKIKIGLSVEEHKSRL 235

Query: 1048 KERLGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEM 869
            KE+LGCEPS EQLA SL ISR+ELQSKLI+ SLAREKL MSNVRLVMSIAQRYDNMGAEM
Sbjct: 236  KEKLGCEPSVEQLATSLRISRTELQSKLIQCSLAREKLTMSNVRLVMSIAQRYDNMGAEM 295

Query: 868  ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLS 689
            ADL+QGGLIGLLRGIEKFD+SKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL 
Sbjct: 296  ADLIQGGLIGLLRGIEKFDASKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 355

Query: 688  LIRNAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGET 509
            LIRNAKVRLEEKGITPSID IAE LNMSKKKVRNATEAISKVFSLDR+AFPSLNGLPGET
Sbjct: 356  LIRNAKVRLEEKGITPSIDSIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGET 415

Query: 508  HHSYIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDIS 329
            HHSYI DNR ENIPWHG+D  ALKDEV+KLI+  LGEREREIIRLYYGLDNECLTWEDIS
Sbjct: 416  HHSYIADNRHENIPWHGLDELALKDEVNKLINLMLGEREREIIRLYYGLDNECLTWEDIS 475

Query: 328  KRIGLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            KRIGLSRERVRQVGLVALEKLKH ARKK +EA+LV+H
Sbjct: 476  KRIGLSRERVRQVGLVALEKLKHGARKKELEAMLVQH 512


>gb|KDO48034.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 499

 Score =  704 bits (1816), Expect = 0.0
 Identities = 383/514 (74%), Positives = 418/514 (81%), Gaps = 4/514 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVND----HNQFASVKNVIVSRKXXXXX 1580
            MMATAAVIG+S GKRLLSSS +YSDI++KFS Y+ND    ++Q  S KNV+ ++K     
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFS-YINDLGSANSQVGSTKNVVAAKKSSNYN 59

Query: 1579 XXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQ 1400
                    Q   Q I+ALKEHV DT    STA+PW +  N +EEE+S L YSVEALLLLQ
Sbjct: 60   PSFPSSNRQT--QPIKALKEHV-DTNF-ASTAEPWAEPPNSIEEESSELDYSVEALLLLQ 115

Query: 1399 KSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQP 1220
            KSMLEKQWNLSFE  VL+D P  +K     PVTCSGVSARQRR+           S +Q 
Sbjct: 116  KSMLEKQWNLSFERTVLTDSP-SKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQ 174

Query: 1219 TIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKER 1040
              +K L + ISPEL+QNRLKGYVKGV+SEELLTHAEVVRLSKKIK GLSL+  K RLKER
Sbjct: 175  NGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER 234

Query: 1039 LGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 860
            LG         +SL ISR ELQS L+E SLAREKL MSNVRLVMSIAQRYDNMGA+MADL
Sbjct: 235  LG---------SSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL 285

Query: 859  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 680
            VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIR
Sbjct: 286  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIR 345

Query: 679  NAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 500
            NAK+RLEEKG+TPS+DRIAE LNMS+KKVRNATEAI KVFSLDREAFPSLNGLPGETHHS
Sbjct: 346  NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHS 405

Query: 499  YIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRI 320
            YI DNR+EN PWHGVD WALKDEV+KLI  TLGEREREIIRLYYGLD ECLTWEDISKRI
Sbjct: 406  YIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRI 465

Query: 319  GLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            GLSRERVRQVGLVALEKLKH ARKK+MEA+LVKH
Sbjct: 466  GLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 499


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
            1 family protein [Populus trichocarpa]
          Length = 509

 Score =  702 bits (1811), Expect = 0.0
 Identities = 376/514 (73%), Positives = 419/514 (81%), Gaps = 4/514 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVNDHN----QFASVKNVIVSRKXXXXX 1580
            MMATAAVIG+S+GKRLLSSS +YSD+T+K S+ VNDH       A+ KNVIV++K     
Sbjct: 1    MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSN-VNDHGITYYPTATTKNVIVAKKSSNYG 59

Query: 1579 XXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQ 1400
                     +   SI+ALKEHV DTA   S    WF+  +D EEE+S L YSVEALLLLQ
Sbjct: 60   PSFPSS--NRNSHSIKALKEHV-DTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQ 116

Query: 1399 KSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQP 1220
            KSMLEKQWNLSFE    SD    +KN+   PVTCSGVSARQRR+              Q 
Sbjct: 117  KSMLEKQWNLSFERTNSSD-STSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQS 175

Query: 1219 TIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKER 1040
            +  K L +  SP+LLQNRLKGYVKGV+S+E+L H EVVRLS+ I+ GLS E  KSRLKER
Sbjct: 176  SDFKFLRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKER 235

Query: 1039 LGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 860
            LGCEPSDEQ+A SL ISR++LQSKLI+ SLAREKLAMSNVRLVMSIAQ+YDNMGAEMADL
Sbjct: 236  LGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADL 295

Query: 859  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 680
            VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL LIR
Sbjct: 296  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIR 355

Query: 679  NAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 500
            NAK+RLEEKG+TPSIDRIAE LNMS++KVRNATEAISKVFSLDREAFPSLNGLPGETHHS
Sbjct: 356  NAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 415

Query: 499  YIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRI 320
            YI DNR EN PWHGVD WALK+EV+KLID+TL ERE+EIIRLY+GLD ECLTWEDISKR+
Sbjct: 416  YIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRM 475

Query: 319  GLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            GLSRERVRQVGLVALEKLKH ARK+  EA+LVKH
Sbjct: 476  GLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_008462812.1| PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo]
          Length = 509

 Score =  699 bits (1805), Expect = 0.0
 Identities = 370/514 (71%), Positives = 422/514 (82%), Gaps = 4/514 (0%)
 Frame = -3

Query: 1747 MMATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVNDHN----QFASVKNVIVSRKXXXXX 1580
            MMAT A+IG+   KRLL+SSS+YSD T+K   Y ND+     Q +  K+V+++ K     
Sbjct: 1    MMATTAIIGLGAAKRLLNSSSYYSDFTEKIL-YANDYRLGQTQVSPTKSVVIA-KSSANF 58

Query: 1579 XXXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQ 1400
                   N+  +Q I+A+KEHV +T   P TA+PW   +   E+E + L  +VEALLLLQ
Sbjct: 59   SPSYPLSNRHSQQCIKAVKEHV-ETPSSP-TAEPWLPNTTIWEDEETDLKCTVEALLLLQ 116

Query: 1399 KSMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQP 1220
            KSMLEKQWNLSFE  V +D+PR EK     PVTCSGVSARQRRM              QP
Sbjct: 117  KSMLEKQWNLSFEQTVSTDMPR-EKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQP 175

Query: 1219 TIAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKER 1040
             I+K L  TISPELLQNRLKGYVKG++SEELL+HAEVVRLSKKIK+GL+LE+ K+RLKER
Sbjct: 176  KISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKER 235

Query: 1039 LGCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 860
            LGCEPS++QLA SL ISR+EL+S+++E SLAREKLAMSNVRLVMSIAQRYDNMGAEMADL
Sbjct: 236  LGCEPSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 295

Query: 859  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 680
            VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL LIR
Sbjct: 296  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIR 355

Query: 679  NAKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 500
            NAKV+L+EKGITPS+DRIAE LNMSKKKV+NATEAISKVFSLDREAFPSLNGLPGETHHS
Sbjct: 356  NAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHS 415

Query: 499  YIPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRI 320
            YI DN LEN PWHG D W LK EV+KLI+ TLG+REREIIRLY+GLDNECLTWE+ISKRI
Sbjct: 416  YIADNCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRI 475

Query: 319  GLSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            GLSRERVRQVGLVALEKLK  A+ ++MEA+L+KH
Sbjct: 476  GLSRERVRQVGLVALEKLKKAAKTRKMEAMLIKH 509


>gb|AKC88628.1| sigma factor [Francoa sonchifolia]
          Length = 508

 Score =  699 bits (1804), Expect = 0.0
 Identities = 375/513 (73%), Positives = 421/513 (82%), Gaps = 4/513 (0%)
 Frame = -3

Query: 1744 MATAAVIGVSTGKRLLSSSSFYSDITDKFSSYVNDHN----QFASVKNVIVSRKXXXXXX 1577
            M T+AVIG+STGKRLLSSS +YSD+T+ FS  VNDH     Q +S K+V+V++K      
Sbjct: 1    MGTSAVIGLSTGKRLLSSSRYYSDLTEMFSC-VNDHALVHYQISSPKSVVVAKKSSNYSP 59

Query: 1576 XXXXXXNQQERQSIRALKEHVVDTAIDPSTAQPWFQESNDLEEEASHLGYSVEALLLLQK 1397
                   Q   Q I+ALKEH+ +TA  PS A+PWFQ SN+LE++ S L YSV+A LLLQK
Sbjct: 60   TFPSSNRQT--QPIKALKEHL-ETASAPSNAEPWFQISNELEKQNSDLEYSVDAFLLLQK 116

Query: 1396 SMLEKQWNLSFESKVLSDLPRGEKNSNNAPVTCSGVSARQRRMXXXXXXXXXXXSFVQPT 1217
            SMLEKQ +LSFE +VL+D  + EK+S    VTCS +SARQRR+             +Q +
Sbjct: 117  SMLEKQLSLSFEQEVLTDSVK-EKHSKKMSVTCSELSARQRRISGRRKILSENNGMLQAS 175

Query: 1216 IAKHLGATISPELLQNRLKGYVKGVISEELLTHAEVVRLSKKIKIGLSLEQQKSRLKERL 1037
             +K L A ISP LLQN  KGYVKGVIS E+L HAEVVRLSKKIK GLS+E+ K RLK +L
Sbjct: 176  TSKQLRAIISPVLLQNHFKGYVKGVISNEVLAHAEVVRLSKKIKSGLSMEEHKLRLKGKL 235

Query: 1036 GCEPSDEQLAASLGISRSELQSKLIESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 857
            GCEPSDEQLA SL IS +EL+SK IES LAREKLAMSNVRLVMSIAQRY+NMGAEM DLV
Sbjct: 236  GCEPSDEQLATSLRISLAELRSKWIESGLAREKLAMSNVRLVMSIAQRYNNMGAEMPDLV 295

Query: 856  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRN 677
            QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQG+SRA+VENSRTLRLPTHLHERL LIRN
Sbjct: 296  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGISRAVVENSRTLRLPTHLHERLGLIRN 355

Query: 676  AKVRLEEKGITPSIDRIAECLNMSKKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSY 497
            AK+RLEEKGITPS++R+AE LN+SKKKVRNATEAISKVFSLDR+AFPSLNGLPGETHHSY
Sbjct: 356  AKIRLEEKGITPSVERLAEYLNISKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSY 415

Query: 496  IPDNRLENIPWHGVDAWALKDEVSKLIDTTLGEREREIIRLYYGLDNECLTWEDISKRIG 317
            I DN L+N PWHGVD WALKDEV+KLI  TLGEREREIIRLYYGLD ECLTWEDISKRIG
Sbjct: 416  IADNCLDNNPWHGVDEWALKDEVNKLIKMTLGEREREIIRLYYGLDGECLTWEDISKRIG 475

Query: 316  LSRERVRQVGLVALEKLKHTARKKRMEALLVKH 218
            LSRERVRQVGLVALEKLKH ARKK MEA+LVKH
Sbjct: 476  LSRERVRQVGLVALEKLKHAARKKNMEAMLVKH 508