BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00001646
         (2591 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010097327.1| hypothetical protein L484_006008 [Morus nota...   769   0.0  
ref|XP_008246291.1| PREDICTED: putative RNA polymerase II subuni...   723   0.0  
ref|XP_007208433.1| hypothetical protein PRUPE_ppa002134mg [Prun...   723   0.0  
emb|CAN62034.1| hypothetical protein VITISV_014731 [Vitis vinifera]   696   0.0  
ref|XP_002280625.1| PREDICTED: putative RNA polymerase II subuni...   686   0.0  
ref|XP_012072543.1| PREDICTED: putative RNA polymerase II subuni...   658   0.0  
ref|XP_004302308.1| PREDICTED: putative RNA polymerase II subuni...   657   0.0  
ref|XP_007016926.1| F2P16.20 protein, putative isoform 1 [Theobr...   647   0.0  
ref|XP_012479689.1| PREDICTED: putative RNA polymerase II subuni...   634   e-178
ref|XP_012479683.1| PREDICTED: putative RNA polymerase II subuni...   633   e-178
ref|XP_002521936.1| conserved hypothetical protein [Ricinus comm...   633   e-178
ref|XP_009366054.1| PREDICTED: LOW QUALITY PROTEIN: putative RNA...   629   e-177
ref|XP_008388442.1| PREDICTED: putative RNA polymerase II subuni...   627   e-176
gb|KHG00854.1| hypothetical protein F383_23706 [Gossypium arboreum]   626   e-176
ref|XP_011044667.1| PREDICTED: putative RNA polymerase II subuni...   625   e-176
gb|KOM34025.1| hypothetical protein LR48_Vigan02g017500 [Vigna a...   624   e-175
gb|KHG00855.1| hypothetical protein F383_23706 [Gossypium arboreum]   623   e-175
ref|XP_014513955.1| PREDICTED: putative RNA polymerase II subuni...   619   e-174
ref|XP_009335520.1| PREDICTED: putative RNA polymerase II subuni...   618   e-173
ref|XP_007145767.1| hypothetical protein PHAVU_007G265900g [Phas...   616   e-173

>ref|XP_010097327.1| hypothetical protein L484_006008 [Morus notabilis]
            gi|587878561|gb|EXB67559.1| hypothetical protein
            L484_006008 [Morus notabilis]
          Length = 695

 Score =  769 bits (1985), Expect = 0.0
 Identities = 434/743 (58%), Positives = 512/743 (68%), Gaps = 12/743 (1%)
 Frame = -2

Query: 2464 MAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGY 2285
            MAK Q   PISV + VY+LQLSLLQG+   + LFAAGSIMSRSDYNDVVTERSIANLCGY
Sbjct: 1    MAKNQPP-PISVKDTVYRLQLSLLQGLHGEDQLFAAGSIMSRSDYNDVVTERSIANLCGY 59

Query: 2284 PLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPL 2105
            PLC N LP + PRKGR+ +S K+ K+ DL ET MYCSSDC   S+ FA+  LK+ERC+ L
Sbjct: 60   PLCPNPLPSDRPRKGRYRISLKEHKVYDLHETYMYCSSDCVINSRTFAAS-LKDERCAVL 118

Query: 2104 DLAKIRSVLKLFEEEDHDDSVLEGDVG-----DLGLSGLKIEEKTGTRVGDVDLEHWVGP 1940
            D A+I +VL++FE    D S LE ++G     DLG S LKIEEKT   VGDV LE W GP
Sbjct: 119  DSARIDAVLRMFE----DYSGLERELGFGKDRDLGFSKLKIEEKTENCVGDVSLEQWAGP 174

Query: 1939 SNAIEGYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVS 1760
            SNAIEGYV QRE+  K+  SKSPK+ SKAN         +L+N++DF+STIIT DEY+VS
Sbjct: 175  SNAIEGYVLQRERKPKELGSKSPKRGSKAN-------NTVLINDMDFVSTIITEDEYTVS 227

Query: 1759 KMRSGLTDTKFDEKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSERKAIQSKGESSKI 1580
            K  S L  T  D K+RE +  L+  A  N+F VLETS    +               S++
Sbjct: 228  KTPSSLKKTGLDSKVREQEEILAKKAMGNEFAVLETSYAPAS-------------NVSRV 274

Query: 1579 ALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLKPAGTKKLRR 1400
             L  E         ++  ++GS  S+ +AEEE   +KA+   EA++K SLKP+  KKL R
Sbjct: 275  GLVFE-------DVTSSLRAGSCLSSARAEEESHDDKAEKCTEASIKSSLKPSRKKKLSR 327

Query: 1399 SVTWADEKTDSTGIRNLLEVREIEDMNLD------MDKLSLNPSGAKKVSHTLTQDTERI 1238
            +VTWADEKTDS+G R L E+REIEDM  D       + +S   SG  K   ++    E+ 
Sbjct: 328  TVTWADEKTDSSGGRKLCEIREIEDMKEDPSVVENKNGVSFTSSGKMKAGQSVIWADEKG 387

Query: 1237 ESRGSRSLCDIREMEDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAVASGES 1058
            +S  S  +C++RE+ED KEA D+  +    E DD  RF+SAEACA AL EASEAVAS E 
Sbjct: 388  DSSKSIDVCEVREIEDAKEAADMLCNADTGENDDTFRFASAEACARALDEASEAVASEEL 447

Query: 1057 DVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKAPQKWP 878
            +V  AMSEAGIII P                              D + SEPE+AP KWP
Sbjct: 448  EVNDAMSEAGIIILPRPENGDEGEPMEEDD---------------DDETSEPEQAPIKWP 492

Query: 877  IKPGTKHSDMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRDESLHE 698
             KPG++HSD+FDPEDSWFDAPPE  SLTLS FA MWNALFTWTTSSTLAYI GRDESLHE
Sbjct: 493  KKPGSQHSDLFDPEDSWFDAPPEDFSLTLSPFAKMWNALFTWTTSSTLAYIYGRDESLHE 552

Query: 697  EYLSVNGREYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKGMGRLL 518
            EY  VNGREYP+KIV GDGRSSEIKQTLAGSLARALPG+V  L+L  PIS+LE+GMGRLL
Sbjct: 553  EYAVVNGREYPEKIVFGDGRSSEIKQTLAGSLARALPGLVADLRLSTPISSLEQGMGRLL 612

Query: 517  DTMSFTEALPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRML-HKVLDGTQISAEE 341
            DTMSF +ALP  RMKQWQVI+LLF+EALSV RLPALTPHM  RR+L HKVLD  QISAEE
Sbjct: 613  DTMSFVDALPPFRMKQWQVIILLFLEALSVYRLPALTPHMMYRRVLFHKVLDSAQISAEE 672

Query: 340  YEVMKDLIIPLGRAPHFSAQSGA 272
            YEVMKDL+IPLGR PHFSAQSGA
Sbjct: 673  YEVMKDLVIPLGRTPHFSAQSGA 695


>ref|XP_008246291.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Prunus mume]
          Length = 711

 Score =  723 bits (1867), Expect = 0.0
 Identities = 413/749 (55%), Positives = 507/749 (67%), Gaps = 21/749 (2%)
 Frame = -2

Query: 2455 EQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGYPLC 2276
            EQQQ  ISV + VYKLQL+LL+GI+  +HL+ AGSI+SRSDYNDVVTER+IANLCGYPLC
Sbjct: 7    EQQQPRISVKDTVYKLQLALLEGIKTQDHLYLAGSIISRSDYNDVVTERTIANLCGYPLC 66

Query: 2275 FNSLPP--NPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPLD 2102
             N+LP   + PRKG + +S K+ K+ DL ET MYCSS C   SKAFA   L EERC  LD
Sbjct: 67   SNALPSECSRPRKGHYRISLKEHKVYDLHETYMYCSSRCVIESKAFAQS-LSEERCDVLD 125

Query: 2101 LAKIRSVLKLFEEEDHD-DSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHW-------- 1949
              K+  +L+ F +   D   V  G++GDLG+S LKIEEK  T +GD+ +           
Sbjct: 126  FGKVERILRAFGDVGFDKGEVGFGEIGDLGISKLKIEEKVKTGIGDLGISRLKIEEKSET 185

Query: 1948 -------VGPSNAIEGYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMST 1790
                   VGPSNAIEGYVPQ+E+ SK   SK  K+ SK          D++ NE+DFMST
Sbjct: 186  HIGDLGAVGPSNAIEGYVPQKERTSKPLGSKRNKEGSKGKDAKMSSGMDIIFNEMDFMST 245

Query: 1789 IITNDEYSVSKMRSGLTDTKFDEKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSERKA 1610
            IIT+DEYSVSK+        F+ K +E K  +                  +N NDS +K+
Sbjct: 246  IITSDEYSVSKIPPSEGKPDFETKFKESKGKVG-----------------LNKNDSVKKS 288

Query: 1609 IQSKGESSKIALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSL 1430
             QSK   +K   ++++  +E+PSTS   ++  + ST + +EE  VEKA+ S+EA L+ SL
Sbjct: 289  RQSKRGKNKNVKKDDVCNREVPSTSDASQTVLNGSTKEEKEEFIVEKAEQSSEALLRSSL 348

Query: 1429 KPAGTKKLRRSVTWADEKTDSTGIRNLLEVREIEDMNLDMDKLSL--NPSGAKKVSHTLT 1256
            KP+GTKKL RSVTWADE  DSTG RNL EVRE+E +    D  S    PS   KV  + T
Sbjct: 349  KPSGTKKLNRSVTWADETIDSTGSRNLCEVREMEQIMEYSDAFSSMHKPSVENKVGCSNT 408

Query: 1255 QDTERIESRGSRSLCDIREMEDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEA 1076
               E+I+S  S+++C++RE++D     DV  S  ++E + +    SAEACA+AL +A+EA
Sbjct: 409  WFDEKIDSTKSKNICEVREVQD----ADVLGSLNLQENEIL---ESAEACAMALSQAAEA 461

Query: 1075 VASGESDVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEK 896
            VASGESDV+GA+S AGIII P                              DVD  EPE+
Sbjct: 462  VASGESDVSGAVSGAGIIILPRPDGLDEEEPTE------------------DVDMLEPEQ 503

Query: 895  APQKWPIKPGTKHSDMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGR 716
            AP  WP KPG   SD+FDPEDSWFDAPPEG SLTLS FATMWN+LFTW TSSTLAYI GR
Sbjct: 504  AP-LWPTKPGIPCSDLFDPEDSWFDAPPEGFSLTLSPFATMWNSLFTWITSSTLAYIYGR 562

Query: 715  DESLHEEYLSVNGREYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEK 536
            DES HEE+LSVNGREYP KIVL  GRSSEIK+TL  S ARALPGVV +L+L  PIS+LE+
Sbjct: 563  DESFHEEFLSVNGREYPPKIVLAGGRSSEIKKTLDESFARALPGVVSELRLPTPISSLEQ 622

Query: 535  GMGRLLDTMSFTEALPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRML-HKVLDGT 359
            GMGR+L+TMSF +A+PA RMKQWQVIVLLF+E LSVCR+PALTPHMTNRRML +KVL+ T
Sbjct: 623  GMGRMLNTMSFIDAIPAFRMKQWQVIVLLFLEGLSVCRIPALTPHMTNRRMLFYKVLENT 682

Query: 358  QISAEEYEVMKDLIIPLGRAPHFSAQSGA 272
            QISAE+YE+MKDLIIPLGRAP FSAQSGA
Sbjct: 683  QISAEQYELMKDLIIPLGRAPQFSAQSGA 711


>ref|XP_007208433.1| hypothetical protein PRUPE_ppa002134mg [Prunus persica]
            gi|462404075|gb|EMJ09632.1| hypothetical protein
            PRUPE_ppa002134mg [Prunus persica]
          Length = 711

 Score =  723 bits (1866), Expect = 0.0
 Identities = 409/749 (54%), Positives = 509/749 (67%), Gaps = 21/749 (2%)
 Frame = -2

Query: 2455 EQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGYPLC 2276
            EQQQ  ISV + VYKLQL+LL+GI+  +HL+ AGSI+SRSDYNDVVTER+IANLCGYPLC
Sbjct: 7    EQQQPRISVKDTVYKLQLALLEGIKTQDHLYLAGSIISRSDYNDVVTERTIANLCGYPLC 66

Query: 2275 FNSLPPNP--PRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPLD 2102
             N+LP +   P KG + +S K+ K+ DL ET MYCSS C   SKAFA   L EERC  LD
Sbjct: 67   SNALPSDSSRPHKGHYRISLKEHKVYDLHETYMYCSSRCVIESKAFAQS-LGEERCDVLD 125

Query: 2101 LAKIRSVLKLFEEEDHDDSVLE-GDVGDLGLSGLKIEEKTGTRVGDVDLEHW-------- 1949
              K+  +L+ F +   D   +  G++GDLG+S LKIEEK  T +GD+ +           
Sbjct: 126  FGKVERILRAFGDVGFDKGEVGFGEIGDLGISKLKIEEKVETGIGDLGISRLKIEEKSET 185

Query: 1948 -------VGPSNAIEGYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMST 1790
                   VGPSNAIEGYVPQ+E++SK   SK  K+ SK          D++ NE+DFMST
Sbjct: 186  HIGDLGAVGPSNAIEGYVPQKERISKPLGSKKNKEGSKGKDAKMSSGMDIIFNEMDFMST 245

Query: 1789 IITNDEYSVSKMRSGLTDTKFDEKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSERKA 1610
            IIT+DEYSVSK+   + +  F+ K ++ K  +                  +N NDS +K+
Sbjct: 246  IITSDEYSVSKIPPSVGEPDFETKFKKSKGKVG-----------------LNKNDSVKKS 288

Query: 1609 IQSKGESSKIALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSL 1430
             QSKG  +K   ++++ ++E+PSTS   ++  + ST + +EE  VEKA+ S EA L+ SL
Sbjct: 289  RQSKGGKNKNVKKDDVCIREVPSTSDASQTVLNGSTKEEKEEFIVEKAEQSGEALLRSSL 348

Query: 1429 KPAGTKKLRRSVTWADEKTDSTGIRNLLEVREIEDMNLDMDKLSL--NPSGAKKVSHTLT 1256
            KP+GTKKL RSVTWADE  DSTG RNL EVRE+E +    D  S    PS   KV  + T
Sbjct: 349  KPSGTKKLNRSVTWADEMIDSTGSRNLYEVREMEQIMEYSDAFSSMHKPSVENKVGCSNT 408

Query: 1255 QDTERIESRGSRSLCDIREMEDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEA 1076
               E+I+S  S+++C++RE++D     DV  S  ++E + +    SAEACA+AL +A+EA
Sbjct: 409  WFDEKIDSTKSKNICEVREVQD----ADVLGSLDLQENEIL---ESAEACAMALNQAAEA 461

Query: 1075 VASGESDVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEK 896
            VASGESDV+GA+S AGIII P                              DVD  E E+
Sbjct: 462  VASGESDVSGAVSGAGIIILPRPDGLDEEEPTE------------------DVDMLESEQ 503

Query: 895  APQKWPIKPGTKHSDMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGR 716
            AP  WP KPG   SD+FDPEDSWFDAPPEG S+TLS FATMWN+LFTW TSSTLAYI GR
Sbjct: 504  AP-LWPRKPGIPCSDLFDPEDSWFDAPPEGFSVTLSPFATMWNSLFTWITSSTLAYIYGR 562

Query: 715  DESLHEEYLSVNGREYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEK 536
            DES HEE+LSVNGREYP KIVL  GRSSEIK+TL  S ARALPGVV +L+L  PIS+LE+
Sbjct: 563  DESFHEEFLSVNGREYPPKIVLAGGRSSEIKKTLDESFARALPGVVSELRLPTPISSLEQ 622

Query: 535  GMGRLLDTMSFTEALPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRML-HKVLDGT 359
            GMGR+L+TMSF +A+PA RMKQWQVIVLLF+E LSVCR+PALTPHMTNRRML +KVL+ T
Sbjct: 623  GMGRMLNTMSFIDAIPAFRMKQWQVIVLLFLEGLSVCRIPALTPHMTNRRMLFYKVLENT 682

Query: 358  QISAEEYEVMKDLIIPLGRAPHFSAQSGA 272
            QISAE+YE+MKDLIIPLGRAP FSAQSGA
Sbjct: 683  QISAEQYELMKDLIIPLGRAPQFSAQSGA 711


>emb|CAN62034.1| hypothetical protein VITISV_014731 [Vitis vinifera]
          Length = 659

 Score =  696 bits (1797), Expect = 0.0
 Identities = 390/724 (53%), Positives = 481/724 (66%), Gaps = 2/724 (0%)
 Frame = -2

Query: 2440 PISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGYPLCFNSLP 2261
            PI+V +AV+KLQL LL+GI++ N LFAAGS+MSRSDY DVVTER+IANLCGYPLC NSLP
Sbjct: 6    PIAVKDAVHKLQLFLLEGIQNENQLFAAGSLMSRSDYEDVVTERTIANLCGYPLCSNSLP 65

Query: 2260 PNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPLDLAKIRSV 2081
                RKG + +S K+ K+ DL ET MYCSS C   S++FA G L+EERCS L+  +I  +
Sbjct: 66   SERLRKGHYRISLKEHKVYDLHETYMYCSSGCVVNSRSFA-GSLQEERCSVLNSERINGI 124

Query: 2080 LKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAIEGYVPQREQ 1901
            L+LF E   + + + G  GDLGLS LKI E    + G+V +E W+GPSNAIEGYVPQR++
Sbjct: 125  LRLFGESSLESNKILGKHGDLGLSELKIRENVEKKAGEVSMEDWIGPSNAIEGYVPQRDR 184

Query: 1900 MSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSKMRSGLTDTKFDE 1721
              K    K+ K+ SK++       K+ +++E+DF+STIIT DEYS+SK   GL DT    
Sbjct: 185  NLKPKNIKNHKEGSKSSNSKMDSGKNFVIDEMDFVSTIITKDEYSISKSSKGLKDTTSHA 244

Query: 1720 KLREPKRNLS-GDAAKNQFTVLETSSTTINGNDSERKAIQSKGESSKIALENELGVQELP 1544
            K +EPK   S GD    Q ++LE S+  I  NDSE K  +SKG  S++  ++E    E+P
Sbjct: 245  KSKEPKEKASIGD----QLSMLEKSAPPIQ-NDSESKLRESKGRRSRVIFKDEFSTAEVP 299

Query: 1543 STSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLKPAGTKKLRRSVTWADEKTDST 1364
            S  ++  SGS  +  + +EE   E     N A L P+ KP                    
Sbjct: 300  SVPSQ--SGSELNGVKGKEEYHTE-----NAAQLGPT-KP-------------------- 331

Query: 1363 GIRNLLEVREIEDMNLDMDKLSLNPSGAKKVSHTLTQDTERIESRGSRSLCDIREMEDRK 1184
                               K SL PSG KKV  ++T   E+++S  SR  C +RE+E +K
Sbjct: 332  -------------------KSSLKPSGGKKVIRSVTWADEKMDSADSRDFCKVRELEVKK 372

Query: 1183 EAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAVASGESDVTGAMSEAGIIIFPHQX 1004
            E P+      V + D+ LRF+SAEACA+AL +A+EAVASGE+D+T A+SEAGIII PH  
Sbjct: 373  EDPNGLGDIDVGDDDNALRFASAEACAVALSQAAEAVASGETDMTDAVSEAGIIILPHPR 432

Query: 1003 XXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKAPQKWPIKPGTKHSDMFDPEDSWF 824
                                     L D D  EPE  P KWPIKPG  HSD+FD +DSW+
Sbjct: 433  DMDEGES------------------LKDADLLEPEPVPLKWPIKPGISHSDIFDSDDSWY 474

Query: 823  DAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRDESLHEEYLSVNGREYPQKIVLGD 644
            D PPEG SLTLS FATMW ALF W TSS++AYI GRDES HEEYLSVNGREYP+KIVL D
Sbjct: 475  DTPPEGFSLTLSPFATMWMALFAWITSSSIAYIYGRDESFHEEYLSVNGREYPKKIVLTD 534

Query: 643  GRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKGMGRLLDTMSFTEALPALRMKQWQ 464
            GRSSEIKQTLAG L+RALPG+V  L+L IP+SNLE+G+GRLLDTMSF +ALP+ RMKQWQ
Sbjct: 535  GRSSEIKQTLAGCLSRALPGLVADLRLPIPVSNLEQGVGRLLDTMSFVDALPSFRMKQWQ 594

Query: 463  VIVLLFIEALSVCRLPALTPHMTNRRMLH-KVLDGTQISAEEYEVMKDLIIPLGRAPHFS 287
            VIVLLFI+ALSVCR+PALTPHMT+RRML  KV D  Q+SAEEYEVMKDLIIPLGR P FS
Sbjct: 595  VIVLLFIDALSVCRIPALTPHMTSRRMLFPKVFDAAQVSAEEYEVMKDLIIPLGRVPQFS 654

Query: 286  AQSG 275
            AQSG
Sbjct: 655  AQSG 658


>ref|XP_002280625.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Vitis vinifera]
            gi|731415977|ref|XP_010659731.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            [Vitis vinifera] gi|731415979|ref|XP_010659732.1|
            PREDICTED: putative RNA polymerase II subunit B1 CTD
            phosphatase RPAP2 homolog [Vitis vinifera]
            gi|296089830|emb|CBI39649.3| unnamed protein product
            [Vitis vinifera]
          Length = 659

 Score =  686 bits (1770), Expect = 0.0
 Identities = 383/724 (52%), Positives = 474/724 (65%), Gaps = 2/724 (0%)
 Frame = -2

Query: 2440 PISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGYPLCFNSLP 2261
            PI+V +AV+KLQL LL+GI++ N LFAAGS+MSRSDY DVVTER+IANLCGYPLC NSLP
Sbjct: 6    PIAVKDAVHKLQLFLLEGIQNENQLFAAGSLMSRSDYEDVVTERTIANLCGYPLCSNSLP 65

Query: 2260 PNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPLDLAKIRSV 2081
                RKG + +S K+ K+ DL ET MYCSS C   S++FA G L+EERCS L+  +I  +
Sbjct: 66   SERLRKGHYRISLKEHKVYDLHETYMYCSSGCVVNSRSFA-GSLQEERCSVLNSERINGI 124

Query: 2080 LKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAIEGYVPQREQ 1901
            L+LF E   + + + G  GDLGLS LKI E    + G+V +E W+GPSNAIEGYVPQR++
Sbjct: 125  LRLFGESSLESNKILGKHGDLGLSELKIRENVEKKAGEVSMEDWIGPSNAIEGYVPQRDR 184

Query: 1900 MSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSKMRSGLTDTKFDE 1721
              K    K+ K+ SK++       K+ +++E+DF+ TIIT DEYS+SK   GL DT    
Sbjct: 185  NLKPKNIKNRKEGSKSSNSKMDSGKNFVIDEMDFVRTIITEDEYSISKSSKGLKDTTSHA 244

Query: 1720 KLREPKRNLS-GDAAKNQFTVLETSSTTINGNDSERKAIQSKGESSKIALENELGVQELP 1544
            K +EPK   S GD    Q ++LE S+  I  NDSE K  +SKG  S++  ++E    E+P
Sbjct: 245  KSKEPKEKASIGD----QLSMLEKSAPPIQ-NDSESKLRESKGRRSRVIFKDEFSTAEVP 299

Query: 1543 STSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLKPAGTKKLRRSVTWADEKTDST 1364
            S  ++  SGS  +  + +EE   E A       LK  LK                     
Sbjct: 300  SVPSQ--SGSELNGVKGKEEYHTENAAQLGPTKLKSCLK--------------------- 336

Query: 1363 GIRNLLEVREIEDMNLDMDKLSLNPSGAKKVSHTLTQDTERIESRGSRSLCDIREMEDRK 1184
                                    PSG KKV+ ++T   E+++S  SR  C +RE+E +K
Sbjct: 337  ------------------------PSGGKKVTRSVTWADEKMDSADSRDFCKVRELEVKK 372

Query: 1183 EAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAVASGESDVTGAMSEAGIIIFPHQX 1004
            E P+      V + D+ LRF+SAEACAIAL +A+EAVASGE+D+T A+SEA III PH  
Sbjct: 373  EDPNGLGDIDVGDDDNALRFASAEACAIALSQAAEAVASGETDMTDAVSEARIIILPHPR 432

Query: 1003 XXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKAPQKWPIKPGTKHSDMFDPEDSWF 824
                                     L D D  EPE  P KWPIKPG  HSD+FD +DSW+
Sbjct: 433  DMDEGES------------------LKDADLLEPEPVPLKWPIKPGISHSDIFDSDDSWY 474

Query: 823  DAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRDESLHEEYLSVNGREYPQKIVLGD 644
            D PPEG SLTLS FATMW ALF W TSS++AYI GRDES HEEYLSVNGREYP+KIVL D
Sbjct: 475  DTPPEGFSLTLSPFATMWMALFAWITSSSIAYIYGRDESFHEEYLSVNGREYPKKIVLTD 534

Query: 643  GRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKGMGRLLDTMSFTEALPALRMKQWQ 464
            GRSSEIKQTLAG LARALPG+V  L+L IP+SNLE+G+GRLLDTMSF +ALP+ RMKQWQ
Sbjct: 535  GRSSEIKQTLAGCLARALPGLVADLRLPIPVSNLEQGVGRLLDTMSFVDALPSFRMKQWQ 594

Query: 463  VIVLLFIEALSVCRLPALTPHMTNRRMLH-KVLDGTQISAEEYEVMKDLIIPLGRAPHFS 287
            VIVLLFI+ALSVC++PALTPHM ++RML  KV D  Q+SAEEYEVMKDLIIPLGR P FS
Sbjct: 595  VIVLLFIDALSVCQIPALTPHMISKRMLFPKVFDAAQVSAEEYEVMKDLIIPLGRVPQFS 654

Query: 286  AQSG 275
            AQSG
Sbjct: 655  AQSG 658


>ref|XP_012072543.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Jatropha curcas]
            gi|802599693|ref|XP_012072544.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            [Jatropha curcas] gi|802599695|ref|XP_012072546.1|
            PREDICTED: putative RNA polymerase II subunit B1 CTD
            phosphatase RPAP2 homolog [Jatropha curcas]
            gi|643730423|gb|KDP37902.1| hypothetical protein
            JCGZ_05341 [Jatropha curcas]
          Length = 654

 Score =  658 bits (1698), Expect = 0.0
 Identities = 379/732 (51%), Positives = 467/732 (63%), Gaps = 1/732 (0%)
 Frame = -2

Query: 2464 MAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGY 2285
            MAK+Q    ISV + V+KLQLSLL+GI++ + LF AGS+MSRSDY DVVTERSIANLCGY
Sbjct: 1    MAKDQS---ISVKDTVHKLQLSLLEGIKNEDQLFTAGSLMSRSDYEDVVTERSIANLCGY 57

Query: 2284 PLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPL 2105
            PLC NSLP + P KGR+ +S K+ K+ DL ET MYCSS C   S+AFA G L+EERCS L
Sbjct: 58   PLCNNSLPLDRPYKGRYRISLKEHKVYDLHETYMYCSSSCIVNSRAFA-GSLQEERCSVL 116

Query: 2104 DLAKIRSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAIE 1925
            +  K+  +L++F     D   L  + GDLGLS LKI+EK  + VG+V LE W+GPSNAIE
Sbjct: 117  NPMKLDEILRMFNNLSLDSKNLV-ENGDLGLSNLKIQEKIESNVGEVSLEEWIGPSNAIE 175

Query: 1924 GYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSKMRSG 1745
            GYVPQR++  K  + K+PK+ SKA        ++   N++DFMSTIIT DEYS+SK  SG
Sbjct: 176  GYVPQRDRDFKGSSFKNPKEASKAISTKPVNKQECFFNDMDFMSTIITKDEYSISKAPSG 235

Query: 1744 LTDTKFDEKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSERKAIQSKGESSKIALENE 1565
               T  D KL+E +        K      E  S++   +   + + +SKG  SK  ++ E
Sbjct: 236  SISTGSDMKLQEQR-------GKETHKGSEAQSSSPGKHAFVKTSRKSKGGRSKQIIKEE 288

Query: 1564 LGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLKPAGTKKLRRSVTWA 1385
            L  ++L S S   ++GS  +  + EE+   ++A   +E+ LKPSLKP+G KK   SVTWA
Sbjct: 289  LSDKDLLSASNYSQTGSSMNNAEPEEKSGAKQAANLSESMLKPSLKPSGAKKSVHSVTWA 348

Query: 1384 DEKTDSTGIRNLLEVREIEDMNLDMDKLSLNPSGAKKVSHTLTQDTERIESRGSRSLCDI 1205
            DEK D+   RNL EVRE+ED    ++ L                  + +E+         
Sbjct: 349  DEKFDNAKSRNLCEVREMEDTKSGLEIL------------------DSLEN--------- 381

Query: 1204 REMEDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAVASGESDVTGAMSEAGI 1025
                                 D+MLRF SAEACAIAL +A+EAVASG++DV  AMSEAG+
Sbjct: 382  -------------------NNDNMLRFESAEACAIALSQAAEAVASGDADVNDAMSEAGV 422

Query: 1024 IIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKAPQKWPIKPGTKHSDMF 845
            I+ P                                D  E E A  KWP KP  + SD+F
Sbjct: 423  IVLPQPHHLAPGDSTDI------------------ADMLERESASLKWPAKPAVEQSDLF 464

Query: 844  DPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRDESLHEEYLSVNGREYP 665
            D EDSW+DAPPEG SL LS FATMW ALF W TSS+LA+I GRDE+ HE+YLSVNGREYP
Sbjct: 465  DSEDSWYDAPPEGFSLMLSPFATMWMALFAWVTSSSLAFIYGRDETAHEDYLSVNGREYP 524

Query: 664  QKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKGMGRLLDTMSFTEALPA 485
            QKIVL DGRSSEIK T+ G L+RA PGVV  L+L IPIS LE+G GRLLDTMSF +ALP 
Sbjct: 525  QKIVLRDGRSSEIKLTVEGCLSRAFPGVVADLRLPIPISTLEQGAGRLLDTMSFVDALPP 584

Query: 484  LRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRM-LHKVLDGTQISAEEYEVMKDLIIPL 308
             RMKQWQV   LFIEALSVCR+PALT +MTNRRM LH+VLDG QISAEEYEVMKDL+IPL
Sbjct: 585  FRMKQWQVTAFLFIEALSVCRIPALTSYMTNRRMVLHQVLDGAQISAEEYEVMKDLMIPL 644

Query: 307  GRAPHFSAQSGA 272
            GR P   A+SGA
Sbjct: 645  GRDPR--ARSGA 654


>ref|XP_004302308.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Fragaria vesca subsp. vesca]
          Length = 692

 Score =  657 bits (1696), Expect = 0.0
 Identities = 378/729 (51%), Positives = 478/729 (65%), Gaps = 8/729 (1%)
 Frame = -2

Query: 2434 SVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGYPLCFNSLPP- 2258
            SV++AVYKLQL+LL  ++  + L+ AGSI+SRSDY DVVTERSIA+LCGYPLC N+LPP 
Sbjct: 12   SVNDAVYKLQLALLDSVKTLDRLYLAGSIISRSDYTDVVTERSIADLCGYPLCSNALPPE 71

Query: 2257 -NPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPLDLAKIRSV 2081
             +  RKG + +S K+ K+ DLRET +YCSS C   SKAFA G L EERC  LDL K+  V
Sbjct: 72   ASRTRKGHYRISLKEHKVYDLRETKLYCSSKCVIDSKAFAQG-LSEERCDVLDLGKVERV 130

Query: 2080 LKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAIEGYVPQREQ 1901
            L+ F EE       + ++GDLGLS LKIEEK+GT  G V+     GPSNAIEGYVP+R++
Sbjct: 131  LREFGEE-------KKEIGDLGLSSLKIEEKSGTYSGKVE---EFGPSNAIEGYVPRRDR 180

Query: 1900 MSKQFASKSPKQESKA-NXXXXXXXKDLLVNEIDFMSTIITNDEYSVSKMRSGLTDTKFD 1724
            +SK   +K  KQ SK  +       K L++N++DFMST++  DEYSVSKM   + D   D
Sbjct: 181  VSKASGAKKNKQGSKGKDAKPSGGGKQLILNDMDFMSTLLACDEYSVSKMPPNVADNNVD 240

Query: 1723 EKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSERKAIQSKGESSKIALENELGVQELP 1544
             +L++ K    G   ++ F+VLETS+T                +S  +    +LG+  L 
Sbjct: 241  TELKKSK----GKDLESGFSVLETSAT--------------PNKSEGVMDVGDLGMSRLK 282

Query: 1543 STSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLKPAGTKKLRRSVTWADEKTDST 1364
                           +AEEE QV K + S+E TL+ SLK +GTKKL RSVTWADEK+DST
Sbjct: 283  I--------------EAEEESQVGKGEKSSEGTLRSSLKHSGTKKLSRSVTWADEKSDST 328

Query: 1363 GIRNLLEVREIED--MNLDMDKLSLNPSGAKKVSHTLTQDTERIESRGSRSLCDIREMED 1190
            G RNL EVR++ED   N         PS + +   + +   + I+S    ++C++    D
Sbjct: 329  GRRNLCEVRDMEDGLENPGAFDSLYKPSSSSEAGSSFSWVDKTIDSTKCENICEVSGTHD 388

Query: 1189 RKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAVASGESDVTGAMSEAGIIIFPH 1010
             KE P+V  S  V+  +    F SAEACA+AL EA+ AV +GE D + A+S+AGIII P 
Sbjct: 389  AKEVPEVVGSSVVQGNE---WFESAEACAVALSEAAGAVETGEFDTSDAVSKAGIIILPR 445

Query: 1009 Q--XXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKAPQKWPIKPGTKHSDMFDPE 836
                                        S  D+D  EPE+A  KWP KP +   D+F+PE
Sbjct: 446  TDGVDEEEFIVDGADEEDSIEDSVDEEESTEDIDMLEPEQALSKWPKKPESSQFDLFNPE 505

Query: 835  DSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRDESLHEEYLSVNGREYPQKI 656
            DSWFDAPP+G +LTLS FATMWNALFTWTTSSTLAYI G+D+S HEE+L+VNGR YP KI
Sbjct: 506  DSWFDAPPDGFNLTLSPFATMWNALFTWTTSSTLAYIYGKDDSFHEEFLNVNGRSYPHKI 565

Query: 655  VLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKGMGRLLDTMSFTEALPALRM 476
            VL DGRSSEIK T+  SL+RALP +V +L L +P  NLEKGMG +L+TMSF EALPA RM
Sbjct: 566  VLADGRSSEIKLTVGASLSRALPEIVAELGLAVP--NLEKGMGFMLNTMSFIEALPAFRM 623

Query: 475  KQWQVIVLLFIEALSVCRLPALTPHMTNRRML-HKVLDGTQISAEEYEVMKDLIIPLGRA 299
            KQWQVI LLFIE LSVCR+PALTPHMTNRR+L  +VLDG +IS EEYE+MKD +IPLGRA
Sbjct: 624  KQWQVIALLFIEGLSVCRMPALTPHMTNRRVLIQRVLDGARISVEEYEIMKDFLIPLGRA 683

Query: 298  PHFSAQSGA 272
            P F++QSGA
Sbjct: 684  PQFASQSGA 692


>ref|XP_007016926.1| F2P16.20 protein, putative isoform 1 [Theobroma cacao]
            gi|508787289|gb|EOY34545.1| F2P16.20 protein, putative
            isoform 1 [Theobroma cacao]
          Length = 739

 Score =  647 bits (1670), Expect = 0.0
 Identities = 383/759 (50%), Positives = 477/759 (62%), Gaps = 27/759 (3%)
 Frame = -2

Query: 2467 TMAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCG 2288
            +MAKEQ    ISVSEAV+K+QL LL GIRD   L A+GS++SRSDY DVVTER+I+N CG
Sbjct: 54   SMAKEQS---ISVSEAVHKIQLHLLDGIRDEKQLLASGSLISRSDYEDVVTERTISNTCG 110

Query: 2287 YPLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSP 2108
            YPLC N LP  P RKGR+ +S K+ K+ DL+ET M+CS++C   S+AFA G L+EERCS 
Sbjct: 111  YPLCANPLPSEPRRKGRYRISLKEHKVYDLQETYMFCSTNCLINSRAFA-GSLQEERCSV 169

Query: 2107 LDLAKIRSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAI 1928
            L+ AK+  +L LF + D DD+ L G  GDLG S L+I+E    +  DV L    GPSNAI
Sbjct: 170  LNHAKLNDILSLFGDLDLDDNDL-GKNGDLGFSNLRIKENEEVKAEDVSL---AGPSNAI 225

Query: 1927 EGYVPQREQMSKQFASKSPKQ---ESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSK 1757
            EGYVPQRE +SK    K+ K    +S ++       +  + NE+DF  TII NDEY +SK
Sbjct: 226  EGYVPQRELISKPTPPKNNKNKVFDSSSSKLGSKKEEYFVNNELDFAGTIIMNDEYIISK 285

Query: 1756 M--------RSGLTDTKFDEKLREPKRNLSGDAAKN-QFTVLETSSTTINGN-DSERKAI 1607
                     R+ L+  K D  + E   + + +   N ++T+ +  S +     DS  K +
Sbjct: 286  KPGSFKQGDRTKLSSKKEDFVINE--MDFTSEIIMNDEYTISKMPSGSKQSCFDSNLKEV 343

Query: 1606 QSKG------------ESSKIALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKAD 1463
            + KG             SS    E +  + ELPST   Y+SG   S+ +AE+E   +KA 
Sbjct: 344  EEKGICKDSEDKCVISGSSSALREKDSSIVELPSTKNVYQSGLDTSSAEAEKETHADKAV 403

Query: 1462 ISNEATLKPSLKPAGTKKLRRSVTWADEKTDSTGIRNLLEVREIEDMNLDMDKLSLNPSG 1283
             S+E  LK S                                             L  +G
Sbjct: 404  TSSETVLKSS---------------------------------------------LKSAG 418

Query: 1282 AKKVSHTLT-QDTERIESRGSRSLCDIREMEDRKEAPDVSFSKYVEEKDDMLRFSSAEAC 1106
            AKK++  +T  D ++ ++ G+ +LC+++EME  K   ++S S      D+MLRF SAEAC
Sbjct: 419  AKKLNRFVTWADKKKADNAGNGNLCEVKEMETMKGDSEISGSAEDGGDDNMLRFVSAEAC 478

Query: 1105 AIALGEASEAVASGESDVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSL 926
            A+AL +A+EAVASG+SDVT A+ E G+II P                            +
Sbjct: 479  AMALSKAAEAVASGDSDVTDAVYENGLIILPS------------------LCEVDKEEPM 520

Query: 925  IDVDASEPEKAPQKWPIKPGTKHSDMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWTT 746
             D D  EPE AP KWP KPG  HSDMF+PEDSWFDAPPEG SLTLS+FATMWNALF W T
Sbjct: 521  EDGDMLEPETAPVKWPKKPGIPHSDMFNPEDSWFDAPPEGFSLTLSTFATMWNALFEWIT 580

Query: 745  SSTLAYICGRDESLHEEYLSVNGREYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQLK 566
            SS+LAYI GRDES HEEYLS+NGREYP+KI L DGRSSEIK+TLA  ++RALP +V  L+
Sbjct: 581  SSSLAYIYGRDESFHEEYLSINGREYPRKIALRDGRSSEIKETLASCISRALPAIVTDLR 640

Query: 565  LRIPISNLEKGMGRLLDTMSFTEALPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNRR 386
            L IPIS LE+GMG L+DT+SF EALPA RMKQWQVIVLLFI+ALSVCR+PALTPHMTN R
Sbjct: 641  LPIPISTLEQGMGHLIDTISFMEALPAFRMKQWQVIVLLFIDALSVCRIPALTPHMTNGR 700

Query: 385  M-LHKVLDGTQISAEEYEVMKDLIIPLGRAPHFSAQSGA 272
            M LHKVLDG QIS EEYEVMKDLIIPLGRAPHFSAQSGA
Sbjct: 701  MLLHKVLDGAQISMEEYEVMKDLIIPLGRAPHFSAQSGA 739


>ref|XP_012479689.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X2 [Gossypium raimondii]
          Length = 695

 Score =  634 bits (1635), Expect = e-178
 Identities = 372/758 (49%), Positives = 477/758 (62%), Gaps = 26/758 (3%)
 Frame = -2

Query: 2467 TMAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCG 2288
            +MAK+Q    ISVSEAV+K+QL LL GIRD   L ++GS++SRSDY DVVTERSI+N CG
Sbjct: 7    SMAKDQS---ISVSEAVHKIQLHLLDGIRDEKQLISSGSLISRSDYEDVVTERSISNTCG 63

Query: 2287 YPLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSP 2108
            YPLC N LP  P R+GR+ +S K+ ++ DL+ET+ +CS+DC   S+AFA G L+EERCS 
Sbjct: 64   YPLCQNPLPSEPRRRGRYRISLKEHRVYDLQETSRFCSADCLINSRAFA-GSLQEERCSV 122

Query: 2107 LDLAKIRSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAI 1928
            L+ AK+ ++L LF++ D +D  L G  GDLG S LKI+E    + G+V     VGPSNAI
Sbjct: 123  LNHAKLNAILSLFDDVDLNDEDL-GKNGDLGFSNLKIKENEEIKAGEVSS---VGPSNAI 178

Query: 1927 EGYVPQREQMSKQFASKSPKQ---ESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSK 1757
            EGYVPQRE +SK  +SK+ K    +S ++          + NEIDF S +I N+EY+ SK
Sbjct: 179  EGYVPQRELVSKPSSSKNSKNGVFDSSSSKLGDIKGDYFVNNEIDFTSAVIMNNEYTTSK 238

Query: 1756 MRSGLTDTKFDE--KLREPKRNL---SGDAAKNQFTVLETSSTTINGN------------ 1628
                L  ++  +   +++    +   S     +++TV +T   +  G+            
Sbjct: 239  NPGSLRQSQRTKPSSMKDVINEMDFTSEIIMNDEYTVSKTPPGSRQGSSGSKLKKTEGQG 298

Query: 1627 ---DSERKAIQSKGESSKIALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADIS 1457
               D E K ++S  ESS    + + G+ E+PST    +SG      +AE+E   +KA  S
Sbjct: 299  VCKDFEEKCMRS--ESSSALTKEDSGIVEMPSTKCVDQSGLDTINAEAEKETHSDKAVAS 356

Query: 1456 NEATLKPSLKPAGTKKLRRSVTWADEKTDSTGIRNLLEVREIEDMNLDMDKLSLNPSGAK 1277
            +   LK S                                             L  +GAK
Sbjct: 357  SGVVLKSS---------------------------------------------LKSAGAK 371

Query: 1276 KVSHTLT-QDTERIESRGSRSLCDIREMEDRK-EAPDVSFSKYVEEKDDMLRFSSAEACA 1103
            K++ ++T  D + ++     SLC+++EM+ +K ++ ++  ++  ++ D+MLRF+SAEACA
Sbjct: 372  KLNRSVTWADKKNVDGARKGSLCEVKEMDAQKGDSENLGRAEDGDDDDNMLRFASAEACA 431

Query: 1102 IALGEASEAVASGESDVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLI 923
            +AL EA+ AVASG+SDV  A+SEAG+II  H                             
Sbjct: 432  MALSEAAAAVASGDSDVNDAVSEAGLIILAHPLEADKEEKVENIDTLEAEP--------- 482

Query: 922  DVDASEPEKAPQKWPIKPGTKHSDMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTS 743
                 EPE+ P KWP KPG   SD FDPEDSWFDAPPEG SLTLS+FATMWNALF W TS
Sbjct: 483  -----EPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITS 537

Query: 742  STLAYICGRDESLHEEYLSVNGREYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKL 563
            S+LAYI GRDE+ HEEYLSVNGREYPQKIVL DGRSSEIK+TLAG ++RA P +V  L+L
Sbjct: 538  SSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRAFPAIVTALRL 597

Query: 562  RIPISNLEKGMGRLLDTMSFTEALPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRM 383
             IPIS LE+GMGRLLDTMSF EALPA RMKQWQVIVLL I+ALSVCR+PALTPHMTN RM
Sbjct: 598  PIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVIVLLLIDALSVCRIPALTPHMTNGRM 657

Query: 382  -LHKVLDGTQISAEEYEVMKDLIIPLGRAPHFSAQSGA 272
             LHKVLDG QIS EEYEVMKDLIIPLGRAPHFSAQSGA
Sbjct: 658  LLHKVLDGAQISMEEYEVMKDLIIPLGRAPHFSAQSGA 695


>ref|XP_012479683.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Gossypium raimondii]
            gi|823159708|ref|XP_012479685.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Gossypium raimondii]
            gi|823159710|ref|XP_012479686.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Gossypium raimondii]
            gi|823159712|ref|XP_012479687.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Gossypium raimondii]
            gi|823159714|ref|XP_012479688.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Gossypium raimondii]
            gi|763764410|gb|KJB31664.1| hypothetical protein
            B456_005G200700 [Gossypium raimondii]
            gi|763764411|gb|KJB31665.1| hypothetical protein
            B456_005G200700 [Gossypium raimondii]
            gi|763764412|gb|KJB31666.1| hypothetical protein
            B456_005G200700 [Gossypium raimondii]
            gi|763764413|gb|KJB31667.1| hypothetical protein
            B456_005G200700 [Gossypium raimondii]
            gi|763764414|gb|KJB31668.1| hypothetical protein
            B456_005G200700 [Gossypium raimondii]
          Length = 708

 Score =  633 bits (1632), Expect = e-178
 Identities = 376/771 (48%), Positives = 477/771 (61%), Gaps = 39/771 (5%)
 Frame = -2

Query: 2467 TMAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCG 2288
            +MAK+Q    ISVSEAV+K+QL LL GIRD   L ++GS++SRSDY DVVTERSI+N CG
Sbjct: 7    SMAKDQS---ISVSEAVHKIQLHLLDGIRDEKQLISSGSLISRSDYEDVVTERSISNTCG 63

Query: 2287 YPLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSP 2108
            YPLC N LP  P R+GR+ +S K+ ++ DL+ET+ +CS+DC   S+AFA G L+EERCS 
Sbjct: 64   YPLCQNPLPSEPRRRGRYRISLKEHRVYDLQETSRFCSADCLINSRAFA-GSLQEERCSV 122

Query: 2107 LDLAKIRSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAI 1928
            L+ AK+ ++L LF++ D +D  L G  GDLG S LKI+E    + G+V     VGPSNAI
Sbjct: 123  LNHAKLNAILSLFDDVDLNDEDL-GKNGDLGFSNLKIKENEEIKAGEVSS---VGPSNAI 178

Query: 1927 EGYVPQREQMSKQFASKSPKQ---ESKANXXXXXXXKDLLVNEIDFMSTIITNDEY---- 1769
            EGYVPQRE +SK  +SK+ K    +S ++          + NEIDF S +I N+EY    
Sbjct: 179  EGYVPQRELVSKPSSSKNSKNGVFDSSSSKLGDIKGDYFVNNEIDFTSAVIMNNEYLDFT 238

Query: 1768 SVSKMRSGLTDTKFDEKLREPKRN--------------LSGDAAKNQFTVLETSSTTING 1631
            S   M +  T +K    LR+ +R                S     +++TV +T   +  G
Sbjct: 239  SAVIMNNEYTTSKNPGSLRQSQRTKPSSMKDVINEMDFTSEIIMNDEYTVSKTPPGSRQG 298

Query: 1630 N---------------DSERKAIQSKGESSKIALENELGVQELPSTSTRYKSGSHASTGQ 1496
            +               D E K ++S  ESS    + + G+ E+PST    +SG      +
Sbjct: 299  SSGSKLKKTEGQGVCKDFEEKCMRS--ESSSALTKEDSGIVEMPSTKCVDQSGLDTINAE 356

Query: 1495 AEEEPQVEKADISNEATLKPSLKPAGTKKLRRSVTWADEKTDSTGIRNLLEVREIEDMNL 1316
            AE+E   +KA  S+   LK S                                       
Sbjct: 357  AEKETHSDKAVASSGVVLKSS--------------------------------------- 377

Query: 1315 DMDKLSLNPSGAKKVSHTLT-QDTERIESRGSRSLCDIREMEDRK-EAPDVSFSKYVEEK 1142
                  L  +GAKK++ ++T  D + ++     SLC+++EM+ +K ++ ++  ++  ++ 
Sbjct: 378  ------LKSAGAKKLNRSVTWADKKNVDGARKGSLCEVKEMDAQKGDSENLGRAEDGDDD 431

Query: 1141 DDMLRFSSAEACAIALGEASEAVASGESDVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXX 962
            D+MLRF+SAEACA+AL EA+ AVASG+SDV  A+SEAG+II  H                
Sbjct: 432  DNMLRFASAEACAMALSEAAAAVASGDSDVNDAVSEAGLIILAHPLEADKEEKVENIDTL 491

Query: 961  XXXXXXXXXXSLIDVDASEPEKAPQKWPIKPGTKHSDMFDPEDSWFDAPPEGLSLTLSSF 782
                              EPE+ P KWP KPG   SD FDPEDSWFDAPPEG SLTLS+F
Sbjct: 492  EAEP--------------EPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTF 537

Query: 781  ATMWNALFTWTTSSTLAYICGRDESLHEEYLSVNGREYPQKIVLGDGRSSEIKQTLAGSL 602
            ATMWNALF W TSS+LAYI GRDE+ HEEYLSVNGREYPQKIVL DGRSSEIK+TLAG +
Sbjct: 538  ATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCI 597

Query: 601  ARALPGVVVQLKLRIPISNLEKGMGRLLDTMSFTEALPALRMKQWQVIVLLFIEALSVCR 422
            +RA P +V  L+L IPIS LE+GMGRLLDTMSF EALPA RMKQWQVIVLL I+ALSVCR
Sbjct: 598  SRAFPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVIVLLLIDALSVCR 657

Query: 421  LPALTPHMTNRRM-LHKVLDGTQISAEEYEVMKDLIIPLGRAPHFSAQSGA 272
            +PALTPHMTN RM LHKVLDG QIS EEYEVMKDLIIPLGRAPHFSAQSGA
Sbjct: 658  IPALTPHMTNGRMLLHKVLDGAQISMEEYEVMKDLIIPLGRAPHFSAQSGA 708


>ref|XP_002521936.1| conserved hypothetical protein [Ricinus communis]
            gi|223538861|gb|EEF40460.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 645

 Score =  633 bits (1632), Expect = e-178
 Identities = 366/732 (50%), Positives = 457/732 (62%), Gaps = 1/732 (0%)
 Frame = -2

Query: 2464 MAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGY 2285
            MAKE+    +SV + VYKLQLSLL+GI + + L AAGS+MSRSDY DVV ERSI+NLCGY
Sbjct: 1    MAKEES---VSVKDTVYKLQLSLLEGIENEDQLLAAGSLMSRSDYEDVVVERSISNLCGY 57

Query: 2284 PLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPL 2105
            PLC NSLP + P KGR+ +S K+ ++ DL+ET MYCSS C   S+AF+   L+E+RCS L
Sbjct: 58   PLCNNSLPSDRPYKGRYRISLKEHRVYDLQETYMYCSSSCLVNSRAFSES-LQEKRCSVL 116

Query: 2104 DLAKIRSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAIE 1925
            +  K+  +L+ F +   D   L G  GDLGLS LKI+EK+ T VG V LE W+GPSNAIE
Sbjct: 117  NPIKLNEILRKFNDLTLDSEGL-GRSGDLGLSNLKIQEKSETNVGKVSLEEWIGPSNAIE 175

Query: 1924 GYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSKMRSG 1745
            GYVPQ ++     + K+ K+  KA        +D   ++ DF STIITNDEYS+SK  SG
Sbjct: 176  GYVPQGDR-DPNPSLKNHKEGLKAICKKPVSKQDCFFSDTDFTSTIITNDEYSISKGPSG 234

Query: 1744 LTDTKFDEKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSERKAIQSKGESSKIALENE 1565
            LT T  D KL+      +G   +     L    +++   DS + + +SKG   +  ++ +
Sbjct: 235  LTSTASDIKLQAQ----TGKGHEG----LNAQLSSLRKQDSIKASRKSKGRRKEKVIKEQ 286

Query: 1564 LGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLKPAGTKKLRRSVTWA 1385
            L  Q+LPS+S          T +AE+  Q   A   NE+ LKPSLK +G K+  RSVTWA
Sbjct: 287  LNFQDLPSSS--------YYTAEAEDISQATGAANLNESVLKPSLKSSGAKRSNRSVTWA 338

Query: 1384 DEKTDSTGIRNLLEVREIEDMNLDMDKLSLNPSGAKKVSHTLTQDTERIESRGSRSLCDI 1205
            DE+ D+ G RNL EV+E+E  N                                      
Sbjct: 339  DERVDNAGSRNLCEVQEMEQTN-------------------------------------- 360

Query: 1204 REMEDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAVASGESDVTGAMSEAGI 1025
                   E+ ++S S    +   MLRF SAEACA+AL +A+EAVASG++DV  AMSEAGI
Sbjct: 361  -------ESHEISESANKGDDGHMLRFESAEACAVALSQAAEAVASGDADVNKAMSEAGI 413

Query: 1024 IIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKAPQKWPIKPGTKHSDMF 845
            I+ P                                D  E E A  KWP KPG   SD+F
Sbjct: 414  IVLPPSQDLGQGGNVEKN------------------DMIEQESASLKWPTKPGIPQSDLF 455

Query: 844  DPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRDESLHEEYLSVNGREYP 665
            DPEDSW+DAPPEG SLTLS FATMW ALF W TSS+LAYI GRDES HE+YLSVNGREYP
Sbjct: 456  DPEDSWYDAPPEGFSLTLSPFATMWMALFAWVTSSSLAYIYGRDESAHEDYLSVNGREYP 515

Query: 664  QKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKGMGRLLDTMSFTEALPA 485
            +KIVL DGRSSEI+ T    LAR  PG+V  L+L IP+S LE+G GRLL+TMSF +ALPA
Sbjct: 516  RKIVLRDGRSSEIRLTAESCLARTFPGLVANLRLPIPVSTLEQGAGRLLETMSFVDALPA 575

Query: 484  LRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRM-LHKVLDGTQISAEEYEVMKDLIIPL 308
             R KQWQVI LLFIEALSVCR+PALT +MT+RRM LH+VLDG  ISAEEY++MKD ++PL
Sbjct: 576  FRTKQWQVIALLFIEALSVCRIPALTSYMTSRRMVLHQVLDGAHISAEEYDIMKDFMVPL 635

Query: 307  GRAPHFSAQSGA 272
            GR P   A+SGA
Sbjct: 636  GRDP--QARSGA 645


>ref|XP_009366054.1| PREDICTED: LOW QUALITY PROTEIN: putative RNA polymerase II subunit B1
            CTD phosphatase RPAP2 homolog [Pyrus x bretschneideri]
          Length = 704

 Score =  629 bits (1622), Expect = e-177
 Identities = 364/748 (48%), Positives = 474/748 (63%), Gaps = 22/748 (2%)
 Frame = -2

Query: 2449 QQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGYPLCFN 2270
            QQ P SV + VYKLQL+LL G++  +HL+ AGSI+SRSDYNDVVTER+IA+ CGYPLC N
Sbjct: 10   QQPPASVKDTVYKLQLALLDGVKTLDHLYLAGSIISRSDYNDVVTERTIADHCGYPLCPN 69

Query: 2269 SLPP--NPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPLDLA 2096
            +LPP  + PRKG + +S K+ K+ DL ET MYCSS C   SKAF    L EERC  LD  
Sbjct: 70   ALPPESSRPRKGHYRISLKEHKVYDLHETYMYCSSSCLIESKAFVQS-LSEERCDVLDYG 128

Query: 2095 KIRSVLKLFEEEDHDDSVL-----------------EGDVGDLGLSGLKIEEKTGTRVGD 1967
            K+  VL+ F + D +   +                 E D GD G+S LKIEEK+  ++GD
Sbjct: 129  KVERVLRAFVDVDFEKGEVVLGDXLGISKLKIKEKSEVDSGDXGISKLKIEEKSEVQLGD 188

Query: 1966 VDLEHWVGPSNAIEGYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMSTI 1787
            V +   VGPSNAIEGYVP  +++SK   SK  K+ SK         KD++ NE+DFMS +
Sbjct: 189  VGV---VGPSNAIEGYVPHNQRISKPLGSKKNKKGSKGKEAKTSGGKDMIFNEMDFMSCV 245

Query: 1786 ITNDEYSVSKMRSGLTDTKFDEKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSERKAI 1607
            I +DEYSVSK+     +   + K++E +  +S                    ND E+K+ 
Sbjct: 246  IASDEYSVSKIPPSSGENGCETKVKESEGKVSHIK-----------------NDYEKKSR 288

Query: 1606 QSKGESSKIALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLK 1427
            +S+GE   I+ E+++GVQE PSTS   ++  +    +A EE   +KA+ SNE  L+ SLK
Sbjct: 289  KSRGEKITISKEDDVGVQEAPSTSETSQTVLNIIIKEAREEFYGDKAEKSNERMLRSSLK 348

Query: 1426 PAGTKKLRRSVTWADEKTD--STGIRNLLEVREIEDMNLDMDKLSLNPSGAKKVSHTLTQ 1253
            P+G KKL  SVTWADEK +   TG           D     +K  + PS    V  ++T 
Sbjct: 349  PSGAKKLNHSVTWADEKVEHRMTGY----------DTFGSNNKPLVKPSAENGVGCSVTW 398

Query: 1252 DTERIESRGSRSLCDIREMEDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAV 1073
              E+I+S   +++ ++RE++  KE   V  +  +++ +   R  SAE CA+AL +A+EAV
Sbjct: 399  SDEKIDSTKIKNVSEVREVQGAKEGSGVLGNLELQDNE---RLESAEFCAMALRQAAEAV 455

Query: 1072 ASGESDVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKA 893
            ASGESD  GA+S AGII+ P                              DVD  EPE+A
Sbjct: 456  ASGESDFNGALSSAGIILLPRPDGVVEEEPNE------------------DVDMLEPEQA 497

Query: 892  PQKWPIKPGTKHSDMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRD 713
            P + P  PG  + D+FD ED+WFD PPEG SLTLS F TM N+LFTW TSSTLAYI GRD
Sbjct: 498  PMQ-PRNPGIPNFDLFDSEDTWFDDPPEGFSLTLSPFLTMGNSLFTWITSSTLAYIYGRD 556

Query: 712  ESLHEEYLSVNGREYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKG 533
            E  HEE+LS+NG+EYP+KIVL  G SSEIK+TLA SLAR LPG+V QL+L  P+S+LE+ 
Sbjct: 557  ERFHEEFLSINGKEYPRKIVLAGGHSSEIKKTLAESLARTLPGIVSQLRLPTPVSSLEQE 616

Query: 532  MGRLLDTMSFTEALPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRML-HKVLDGTQ 356
            M R+L+TM+F +ALPA RMKQW+V+VLLF+E LSVCR+PAL P M +RRML HKVLDG++
Sbjct: 617  MSRMLETMTFVDALPAFRMKQWKVVVLLFLEGLSVCRIPALGPCMPDRRMLFHKVLDGSE 676

Query: 355  ISAEEYEVMKDLIIPLGRAPHFSAQSGA 272
            I+AE YE+MKD IIPLGRAP FSAQSGA
Sbjct: 677  ITAEHYELMKDHIIPLGRAPKFSAQSGA 704


>ref|XP_008388442.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Malus domestica]
          Length = 706

 Score =  627 bits (1616), Expect = e-176
 Identities = 367/748 (49%), Positives = 474/748 (63%), Gaps = 22/748 (2%)
 Frame = -2

Query: 2449 QQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGYPLCFN 2270
            QQ P+SV + VYKLQL+LL+G++  + L+ AGSI+SRSDY+DVVTER+IA+ CGYPLC +
Sbjct: 11   QQQPMSVKDTVYKLQLALLEGVKTLDQLYLAGSIISRSDYSDVVTERTIADHCGYPLCPS 70

Query: 2269 SLPP--NPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPLDLA 2096
            +LPP  + PRKG + +S K+ K+ DL ET MYCSS C  GSKAFA   L EERC  LD  
Sbjct: 71   ALPPESSHPRKGHYRISLKEHKVYDLHETYMYCSSSCLIGSKAFAQS-LSEERCDVLDYG 129

Query: 2095 KIRSVLKLFEEEDHD-------------------DSVLEGDVGDLGLSGLKIEEKTGTRV 1973
            K+  VL+ F +   D                   +   E ++GDLG+S LKIEEK+  ++
Sbjct: 130  KVEKVLRAFGDVGLDKEEVGLGETRDLGISKLKIEEKSEAEIGDLGISKLKIEEKSEVQL 189

Query: 1972 GDVDLEHWVGPSNAIEGYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMS 1793
            GDV +   VGPSNAIEGYVP  +++SK   SK  K+ SK         KD+  NE+DFMS
Sbjct: 190  GDVGV---VGPSNAIEGYVPHNQRISKPLGSKKNKKGSKGKEAKTSGGKDMRFNEMDFMS 246

Query: 1792 TIITNDEYSVSKMRSGLTDTKFDEKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSERK 1613
             II +DEYSVSK+     +   + K  E +  ++                    NDSE+K
Sbjct: 247  CIIASDEYSVSKIPPSSGENGCETKFNESEEKVARIK-----------------NDSEKK 289

Query: 1612 AIQSKGESSKIALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPS 1433
            + QS+G  SKI+ E+ +G++E PSTS   ++    ST +A EE   +K + SNE  L+ S
Sbjct: 290  SKQSRGGKSKISEEDIVGIREAPSTSETSQTFXIRSTKEAREEFPGDK-EKSNEPKLRSS 348

Query: 1432 LKPAGTKKLRRSVTWADEKTDSTGIRNLLEVREIEDMNLDMDKLSLNPSGAKKVSHTLTQ 1253
            LKP+G KKL RSVTWADEK +              D    + K  L PS   +V  ++T 
Sbjct: 349  LKPSGAKKLXRSVTWADEKVEHR--------MNGYDTLGGIHKPLLKPSAENEVGCSVTW 400

Query: 1252 DTERIESRGSRSLCDIREMEDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAV 1073
              E+I+S  S+++C++RE++  KE   V  +    E  D  R  SAE CA+AL +A+EAV
Sbjct: 401  SDEKIDSTKSKNVCEVREVQGAKEGSGVLGNL---ELLDNERLESAEFCAMALRQAAEAV 457

Query: 1072 ASGESDVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKA 893
            ASG+SDV GA+S AGII+ P                              DVD  EPE+A
Sbjct: 458  ASGDSDVNGAVSSAGIILLPRPDGVDEDEPTE------------------DVDXLEPEQA 499

Query: 892  PQKWPIKPGTKHSDMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRD 713
            P +    PG  + D+FD  D+WFD PPEG +LTLS F TMWN+LFTW TSSTLAYI GRD
Sbjct: 500  PLQ-QRNPGIPNFDLFDSXDTWFDDPPEGFNLTLSPFLTMWNSLFTWITSSTLAYIYGRD 558

Query: 712  ESLHEEYLSVNGREYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKG 533
            ES HEE+LS+NG+EY +KIVL  G SSEIK+TLA SLAR LPGVV QL+L  PIS+LE+ 
Sbjct: 559  ESFHEEFLSINGKEYSRKIVLVGGHSSEIKKTLAESLARTLPGVVSQLRLATPISSLEQE 618

Query: 532  MGRLLDTMSFTEALPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRML-HKVLDGTQ 356
            M  +L+TM+F +ALPA RMKQW+V+VLL +E LSVCR+PAL PHM +RR L HKVLDG+Q
Sbjct: 619  MSCMLETMTFVDALPAFRMKQWKVVVLLLLEGLSVCRIPALGPHMPDRRTLFHKVLDGSQ 678

Query: 355  ISAEEYEVMKDLIIPLGRAPHFSAQSGA 272
            I+AE YE+MKD I+PLGRAP FSAQSGA
Sbjct: 679  ITAEXYELMKDHILPLGRAPEFSAQSGA 706


>gb|KHG00854.1| hypothetical protein F383_23706 [Gossypium arboreum]
          Length = 729

 Score =  626 bits (1615), Expect = e-176
 Identities = 368/757 (48%), Positives = 478/757 (63%), Gaps = 28/757 (3%)
 Frame = -2

Query: 2467 TMAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCG 2288
            +MAK+Q    ISVSEAV+K+QL LL GIRD   L ++GS++SRSDY DV+TERSI+N CG
Sbjct: 7    SMAKDQS---ISVSEAVHKIQLHLLDGIRDEKQLISSGSLISRSDYEDVITERSISNTCG 63

Query: 2287 YPLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSP 2108
            YPLC N LP  P R+GR+ +S K+ ++ DL+ET+ +C +DC   S+AFA G L+EERCS 
Sbjct: 64   YPLCQNPLPSEPRRRGRYRISLKEHRVYDLQETSRFCLADCLINSRAFA-GSLQEERCSV 122

Query: 2107 LDLAKIRSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAI 1928
            L+ AK+ ++L LF++ D +D  L G  GDLG S LKI+E    + G++     VGPSNAI
Sbjct: 123  LNHAKLNAILSLFDDVDLNDKDL-GKNGDLGFSNLKIKENEEIKAGEISS---VGPSNAI 178

Query: 1927 EGYVPQREQMSKQFASKSPKQ---ESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSK 1757
            EGYVPQRE +SK  +SK+ K    +S ++          + NEIDF S +I N+EY+ SK
Sbjct: 179  EGYVPQRELVSKPSSSKNSKNGVFDSSSSKLGDIKGDYFVNNEIDFTSAVIMNNEYTTSK 238

Query: 1756 MRSGLTDTKFDE--KLREPKRNL---SGDAAKNQFTVLETSSTTINGN------------ 1628
                L  ++  +   +++    +   S     +++TV +T   +  G+            
Sbjct: 239  NPGSLRQSQRTKPSSMKDVINEMDFTSEIIMNDEYTVSKTPPGSRQGSSGSKLEKTEGKG 298

Query: 1627 ---DSERKAIQSKGESSKIALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADIS 1457
               D E K ++S  ESS    + + G+ ++PST    +SG      +AE+E   +KA  S
Sbjct: 299  VCKDFEEKCMRS--ESSSALTKEDSGIVQMPSTKCVDQSGLDTINAEAEKETHSDKAMAS 356

Query: 1456 NEATLKPSLKPAGTKKLRRSVTWADEKTDSTGIRNLLEVREIEDMNLDMDKLSLNPSGAK 1277
            +   LK S                                             L P+GAK
Sbjct: 357  SGVVLKSS---------------------------------------------LKPAGAK 371

Query: 1276 KVSHTLT-QDTERIESRGSRSLCDIREMEDRK-EAPDVSFSKYVEEKDDMLRFSSAEACA 1103
            K++ ++T  D + ++S    SLC+++EM+ +K ++ ++  ++  +  D MLRF+SAEACA
Sbjct: 372  KLNRSVTWADKKNVDSARKGSLCEVKEMDAQKGDSENIGRAEDGDADDKMLRFASAEACA 431

Query: 1102 IALGEASEA--VASGESDVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXS 929
            +AL +A+ A  VASG+SDV  A+SEAG+II PH                           
Sbjct: 432  MALSKAAAAAAVASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDT------------ 479

Query: 928  LIDVDASEPEKAPQKWPIKPGTKHSDMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWT 749
             ++ D  EPE+ P KWP KPG   SD FDPEDSWFDAPPEG SLTLS+FATMWNALF W 
Sbjct: 480  -LEADP-EPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWI 537

Query: 748  TSSTLAYICGRDESLHEEYLSVNGREYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQL 569
            TSS+LAYI GRDE+ HEEYLSVNGREYPQKIVL DGRSSEIK+TLAG ++RALP +V  L
Sbjct: 538  TSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTAL 597

Query: 568  KLRIPISNLEKGMGRLLDTMSFTEALPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNR 389
            +L IPIS LE+GMGRLLDTMSF EALPA RMKQWQV+VLL I+ALSVCR+PALTPHMTN 
Sbjct: 598  RLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNG 657

Query: 388  RM-LHKVLDGTQISAEEYEVMKDLIIPLGRAPHFSAQ 281
            RM LHKVLDG QIS EEYEVMKDLIIPLGRAPHFSAQ
Sbjct: 658  RMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQ 694


>ref|XP_011044667.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X2 [Populus euphratica]
          Length = 722

 Score =  625 bits (1611), Expect = e-176
 Identities = 370/789 (46%), Positives = 466/789 (59%), Gaps = 58/789 (7%)
 Frame = -2

Query: 2464 MAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGY 2285
            MAK+Q      V + +YKLQLSLL+GI++ + LFAAGSIMSRSDY DVVTER+IANLCGY
Sbjct: 1    MAKDQLTV---VKDTIYKLQLSLLEGIQNEDQLFAAGSIMSRSDYEDVVTERTIANLCGY 57

Query: 2284 PLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPL 2105
            PLC NSLP + P+KGR+ +S K+ K+ DL ET MYCSS C   S+ F SG L+EERC  L
Sbjct: 58   PLCGNSLPSDRPQKGRYRISLKEHKVYDLNETYMYCSSSCVVNSRTF-SGSLQEERCLVL 116

Query: 2104 DLAKIRSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAIE 1925
            + AK+  VL LF+  +       G  GDLG S LKIEEKT    G+V  E W+GPSNAIE
Sbjct: 117  NPAKLNEVLMLFDNFNLGSEGGLGKNGDLGFSNLKIEEKTEKVEGEVSFEQWIGPSNAIE 176

Query: 1924 GYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSKMRSG 1745
            GYVPQR++ SK    K+ K+  +AN       +D +++++DF S+IIT DEYS+SK  SG
Sbjct: 177  GYVPQRDRNSKSLPLKNHKEGLEANTAKQSSKEDFIIDDMDFTSSIITQDEYSISKTPSG 236

Query: 1744 LTDTKFDEKLREPKRNLSGDAAKNQFTV--------------LETSSTTI---------- 1637
            LTDT  D+K ++PK   S   +K   T               +  +ST I          
Sbjct: 237  LTDTNTDKKTQKPKAKGSHKGSKGSETKGAKQSIKQDSFINDMNFTSTIIITQDEYSISK 296

Query: 1636 ---------------------------NGNDSERKAIQS------KGESSKIALENELGV 1556
                                       N + + RK   S      K + SK  +++EL  
Sbjct: 297  SPSGLAGTTSKTKKQKQKEKVSQKSSENQSSASRKVDSSKTSRKVKEDRSKGPIKDELSS 356

Query: 1555 QELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLKPAGTKKLRRSVTWADEK 1376
            Q+L S     ++ S   T +A+E+   EKA    E++LKPSLK +G KKL RSVTWADEK
Sbjct: 357  QDLSSPFDSCQTSSITITAEAKEKSMSEKAAKPVESSLKPSLKTSGAKKLARSVTWADEK 416

Query: 1375 TDSTGIRNLLEVREIEDMNLDMDKLSLNPSGAKKVSHTLTQDTERIESRGSRSLCDIREM 1196
              S+G R+L E RE+ED                                           
Sbjct: 417  VGSSGSRDLCEDREMED------------------------------------------- 433

Query: 1195 EDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAVASGESDVTGAMSEAGIIIF 1016
               K  P++  +    + D +L+F SAEACA AL +A+EAVASG++D + A+SEAG++I 
Sbjct: 434  --TKAGPEIVDNIDKRDDDYVLKFESAEACAKALSQAAEAVASGDADASNALSEAGLVIL 491

Query: 1015 PHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKAPQKWPIKPGTKHSDMFDPE 836
            P                               VD  + E +  KWP KPG   S+ FDPE
Sbjct: 492  PQPHDLDQGDPMEY------------------VDVLDEESSTLKWPGKPGIPQSECFDPE 533

Query: 835  DSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRDESLHEEYLSVNGREYPQKI 656
            +SW+DAPPEG SL LSSFAT+W ALF W TSS+LAY+ G+DES HEEY  VNGREYP+KI
Sbjct: 534  NSWYDAPPEGFSLELSSFATIWMALFAWVTSSSLAYVYGKDESSHEEYSMVNGREYPRKI 593

Query: 655  VLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKGMGRLLDTMSFTEALPALRM 476
            V GDGRS EI+QT+ G L RA P VV  L+L IPIS LE+G   LL TMSF +A+PA RM
Sbjct: 594  VSGDGRSFEIQQTIEGCLGRAFPVVVADLRLPIPISTLEQGAANLLGTMSFLDAVPAFRM 653

Query: 475  KQWQVIVLLFIEALSVCRLPALTPHMTNRRM-LHKVLDGTQISAEEYEVMKDLIIPLGRA 299
            KQWQVI LLFIEALSVCR+PAL  +M NRRM + KV+DG ++SAEEYEVMKDL+IPLGRA
Sbjct: 654  KQWQVIALLFIEALSVCRIPALISYMDNRRMVIQKVVDGVRMSAEEYEVMKDLMIPLGRA 713

Query: 298  PHFSAQSGA 272
            P FS QSGA
Sbjct: 714  PQFSPQSGA 722


>gb|KOM34025.1| hypothetical protein LR48_Vigan02g017500 [Vigna angularis]
          Length = 695

 Score =  624 bits (1609), Expect = e-175
 Identities = 351/728 (48%), Positives = 471/728 (64%), Gaps = 2/728 (0%)
 Frame = -2

Query: 2449 QQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGYPLCFN 2270
            + + +SV +AV+KLQ+ L +GI++ + LFAAGS+MSRSDY D+VTERSI N+CGYPLC N
Sbjct: 3    KNNAVSVKDAVFKLQMLLFEGIQNEDQLFAAGSLMSRSDYEDIVTERSITNVCGYPLCCN 62

Query: 2269 SLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPLDLAKI 2090
            +LP   PRKGR+ +S K+ K+ DL+ET ++CSS+C   SKAFA G L+ ERC  LD  K+
Sbjct: 63   ALPTERPRKGRYRISLKEHKVYDLQETYLFCSSNCVVSSKAFA-GSLQSERCLALDPEKL 121

Query: 2089 RSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAIEGYVPQ 1910
             ++LKLFE  + + +      GDLGLS LKI+EKT T  G+V LE WVGPSNAIEGYVP+
Sbjct: 122  NNILKLFENLNLEQTENVRKDGDLGLSNLKIQEKTVTSTGEVSLEEWVGPSNAIEGYVPK 181

Query: 1909 REQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSKMRSGLTDTK 1730
              +   + + KS K+ SKA        KDL+ NE++F+STII  DEYSVSK   G TDT 
Sbjct: 182  PRERESKGSRKSVKKGSKAGHDKSNNDKDLVNNEMNFVSTIIMQDEYSVSKASPGQTDTT 241

Query: 1729 FDEKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSERKAIQSKGESSKIALENELGVQE 1550
              +  R+P++       K++ ++ + SS+  +G +     + +  +  +++   E   + 
Sbjct: 242  AVD--RQPEKVGLKMVRKDEDSIQDLSSSFKSGLN-----LSTSEKEKEVSKSYEAVFKS 294

Query: 1549 LPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLKPAG-TKKLRRSVTWADEKT 1373
             P+ +++ K     S   +E +   EK + S +     S++  G T ++  +   +    
Sbjct: 295  SPNLASKKKDAH--SVPISERQYDQEKHNSSRK-----SVQGKGETSRVTANGGASTSNF 347

Query: 1372 DSTGIRNLLEVREIEDMNLDMDKLSLNPSGAKKVSHTLTQDTERIESRGSRSLCDIREME 1193
            D   ++   +V ++        K SL  +G KK S T+T   E+I S G++ LC+++E  
Sbjct: 348  DPDNVKEKFQVEKVGGSCETKLKSSLKSAGQKKPSRTVTWADEKINSAGNKDLCEVKEFG 407

Query: 1192 DRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAVASGESDVTGAMSEAGIIIFP 1013
            D  +  +   +  V + + MLR +SAEACAIAL +ASEAVASG+SDVT A+SEAGIII P
Sbjct: 408  DISKEYESLGNVDVTDDEYMLRQASAEACAIALSQASEAVASGDSDVTDAVSEAGIIILP 467

Query: 1012 HQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKAPQKWPIKPGTKHSDMFDPED 833
            H                           + D D  + +    KWP KPG    D F+ +D
Sbjct: 468  HDAVEEGT--------------------IEDADILQNDSVTLKWPRKPGVSDIDFFESDD 507

Query: 832  SWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRDESLHEEYLSVNGREYPQKIV 653
            SWFDAPPEG SLTLS FATMWNA+F+W TSS+LAYI GRDES HEEYLSVNGREYP K+V
Sbjct: 508  SWFDAPPEGFSLTLSPFATMWNAIFSWMTSSSLAYIYGRDESFHEEYLSVNGREYPCKVV 567

Query: 652  LGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKGMGRLLDTMSFTEALPALRMK 473
            L DGRSSEIKQTLAG LARA P +V  L+L IPIS LE+GM  LL+TMSF +ALP  R K
Sbjct: 568  LSDGRSSEIKQTLAGCLARAFPALVAGLRLPIPISTLEQGMACLLETMSFVDALPPFRTK 627

Query: 472  QWQVIVLLFIEALSVCRLPALTPHMTNRRML-HKVLDGTQISAEEYEVMKDLIIPLGRAP 296
            QWQV+ LLF++ALSVCR+PAL  +MT+RR L HKVL G+QI  EEYE++KDL++PLGRAP
Sbjct: 628  QWQVVTLLFVDALSVCRIPALISYMTDRRSLFHKVLSGSQIGIEEYEILKDLVVPLGRAP 687

Query: 295  HFSAQSGA 272
            H SAQSGA
Sbjct: 688  HISAQSGA 695


>gb|KHG00855.1| hypothetical protein F383_23706 [Gossypium arboreum]
          Length = 708

 Score =  623 bits (1607), Expect = e-175
 Identities = 371/771 (48%), Positives = 481/771 (62%), Gaps = 39/771 (5%)
 Frame = -2

Query: 2467 TMAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCG 2288
            +MAK+Q    ISVSEAV+K+QL LL GIRD   L ++GS++SRSDY DV+TERSI+N CG
Sbjct: 7    SMAKDQS---ISVSEAVHKIQLHLLDGIRDEKQLISSGSLISRSDYEDVITERSISNTCG 63

Query: 2287 YPLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSP 2108
            YPLC N LP  P R+GR+ +S K+ ++ DL+ET+ +C +DC   S+AFA G L+EERCS 
Sbjct: 64   YPLCQNPLPSEPRRRGRYRISLKEHRVYDLQETSRFCLADCLINSRAFA-GSLQEERCSV 122

Query: 2107 LDLAKIRSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAI 1928
            L+ AK+ ++L LF++ D +D  L G  GDLG S LKI+E    + G++     VGPSNAI
Sbjct: 123  LNHAKLNAILSLFDDVDLNDKDL-GKNGDLGFSNLKIKENEEIKAGEISS---VGPSNAI 178

Query: 1927 EGYVPQREQMSKQFASKSPKQ---ESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSK 1757
            EGYVPQRE +SK  +SK+ K    +S ++          + NEIDF S +I N+EY+ SK
Sbjct: 179  EGYVPQRELVSKPSSSKNSKNGVFDSSSSKLGDIKGDYFVNNEIDFTSAVIMNNEYTTSK 238

Query: 1756 MRSGLTDTKFDE--KLREPKRNL---SGDAAKNQFTVLETSSTTINGN------------ 1628
                L  ++  +   +++    +   S     +++TV +T   +  G+            
Sbjct: 239  NPGSLRQSQRTKPSSMKDVINEMDFTSEIIMNDEYTVSKTPPGSRQGSSGSKLEKTEGKG 298

Query: 1627 ---DSERKAIQSKGESSKIALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADIS 1457
               D E K ++S  ESS    + + G+ ++PST    +SG      +AE+E   +KA  S
Sbjct: 299  VCKDFEEKCMRS--ESSSALTKEDSGIVQMPSTKCVDQSGLDTINAEAEKETHSDKAMAS 356

Query: 1456 NEATLKPSLKPAGTKKLRRSVTWADEKTDSTGIRNLLEVREIEDMNLDMDKLSLNPSGAK 1277
            +   LK S                                             L P+GAK
Sbjct: 357  SGVVLKSS---------------------------------------------LKPAGAK 371

Query: 1276 KVSHTLT-QDTERIESRGSRSLCDIREMEDRK-EAPDVSFSKYVEEKDDMLRFSSAEACA 1103
            K++ ++T  D + ++S    SLC+++EM+ +K ++ ++  ++  +  D MLRF+SAEACA
Sbjct: 372  KLNRSVTWADKKNVDSARKGSLCEVKEMDAQKGDSENIGRAEDGDADDKMLRFASAEACA 431

Query: 1102 IALGEASEA--VASGESDVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXS 929
            +AL +A+ A  VASG+SDV  A+SEAG+II PH                           
Sbjct: 432  MALSKAAAAAAVASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDT------------ 479

Query: 928  LIDVDASEPEKAPQKWPIKPGTKHSDMFDPEDSWFDAPPEGLSLT-----------LSSF 782
             ++ D  EPE+ P KWP KPG   SD FDPEDSWFDAPPEG SLT           LS+F
Sbjct: 480  -LEADP-EPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTVSLIDGQECHKLSTF 537

Query: 781  ATMWNALFTWTTSSTLAYICGRDESLHEEYLSVNGREYPQKIVLGDGRSSEIKQTLAGSL 602
            ATMWNALF W TSS+LAYI GRDE+ HEEYLSVNGREYPQKIVL DGRSSEIK+TLAG +
Sbjct: 538  ATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCI 597

Query: 601  ARALPGVVVQLKLRIPISNLEKGMGRLLDTMSFTEALPALRMKQWQVIVLLFIEALSVCR 422
            +RALP +V  L+L IPIS LE+GMGRLLDTMSF EALPA RMKQWQV+VLL I+ALSVCR
Sbjct: 598  SRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCR 657

Query: 421  LPALTPHMTNRRM-LHKVLDGTQISAEEYEVMKDLIIPLGRAPHFSAQSGA 272
            +PALTPHMTN RM LHKVLDG QIS EEYEVMKDLIIPLGRAPHFSAQSGA
Sbjct: 658  IPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 708


>ref|XP_014513955.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Vigna radiata var. radiata]
            gi|951026614|ref|XP_014513956.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            [Vigna radiata var. radiata]
          Length = 697

 Score =  619 bits (1596), Expect = e-174
 Identities = 357/735 (48%), Positives = 473/735 (64%), Gaps = 4/735 (0%)
 Frame = -2

Query: 2464 MAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGY 2285
            MAK++    +SV +AV+KLQ  LL+GI++ + LFAAGS+MSRSDY D+VTERSI N+CGY
Sbjct: 1    MAKDKV---VSVKDAVFKLQTLLLEGIQNEDQLFAAGSLMSRSDYEDIVTERSITNVCGY 57

Query: 2284 PLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPL 2105
            PLC N+LP   PRKGR+ +S K+ K+ DL+ET ++CSS+C   SKAFA G L+ ERCS L
Sbjct: 58   PLCCNALPSERPRKGRYRISLKEHKVYDLQETYLFCSSNCVVSSKAFA-GSLQVERCSAL 116

Query: 2104 DLAKIRSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAIE 1925
            +  KI ++LKLFE  + + +   G  GD+GLS LKI+EKT T  G+V LE WVGPSNAIE
Sbjct: 117  NPEKINNILKLFENLNLEQTENVGKDGDVGLSDLKIQEKTVTSSGEVSLEEWVGPSNAIE 176

Query: 1924 GYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSKMRSG 1745
            GYVP+  +   + + KS K+ SKA        KDL+ NE++F+STII  DEYSVSK   G
Sbjct: 177  GYVPKPRERESKGSRKSVKKGSKAGHGKSFNNKDLINNEMNFVSTIIMQDEYSVSKASPG 236

Query: 1744 LTDTKFDEKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSERKAIQSKGESSKIALENE 1565
             TDT      R+P++       K++ ++ + SS+  +G +     + +  +  +++   E
Sbjct: 237  QTDTIAVN--RQPEKVGLQIVRKDEDSIQDLSSSFKSGLN-----LGTSEKEKEVSKSYE 289

Query: 1564 LGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLKPAGTKKLRRSVTWA 1385
              VQ  P+ +++ K  SH S   +E +   EK + S ++         G  +  R     
Sbjct: 290  AVVQSSPNLASK-KKDSH-SVSISERQYDQEKHNSSRKSV-------QGKGETSRVTVNG 340

Query: 1384 DEKTDSTGIRNLLEVREIEDMNLDMD---KLSLNPSGAKKVSHTLTQDTERIESRGSRSL 1214
               T +    N+ E  ++E +    +   K SL  +G KK + T+T   E+I   G++ L
Sbjct: 341  GASTSNFDPDNVKEKFQVEKVGGSCETKLKSSLKSAGQKKPNRTVTWADEKINGAGNKDL 400

Query: 1213 CDIREMEDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAVASGESDVTGAMSE 1034
            C+++E  D ++  +   +  V + +DMLR +SAEACAIAL +ASEAVASG+SDV  A+SE
Sbjct: 401  CEVKEFGDIRKEYESLGNVDVADDEDMLRQASAEACAIALSQASEAVASGDSDVIDAVSE 460

Query: 1033 AGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKAPQKWPIKPGTKHS 854
            AGI I P                            + D D  + +    KWP KPG    
Sbjct: 461  AGITILPRPHDAVEEGT------------------IEDDDILQNDSVTLKWPRKPGVSDI 502

Query: 853  DMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRDESLHEEYLSVNGR 674
            D F+ +DSWFDAPPEG SLTLS FATMWNA+F+W TSS+LAYI GRDES HEEYLSVNGR
Sbjct: 503  DFFESDDSWFDAPPEGFSLTLSPFATMWNAVFSWMTSSSLAYIYGRDESFHEEYLSVNGR 562

Query: 673  EYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKGMGRLLDTMSFTEA 494
            EYP K+VL DGRSSEIKQTLAG LARA P +V  L L IPIS LE+GM  LL+TMSF +A
Sbjct: 563  EYPCKVVLSDGRSSEIKQTLAGCLARAFPALVAGLGLPIPISTLEQGMACLLETMSFVDA 622

Query: 493  LPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRML-HKVLDGTQISAEEYEVMKDLI 317
            LP  R KQWQV+ LLF++ALSVCR+PAL  +MT+RR L HKVL G+QI  EEYE++KDL+
Sbjct: 623  LPPFRTKQWQVVTLLFVDALSVCRIPALISYMTDRRSLFHKVLSGSQIGIEEYEILKDLV 682

Query: 316  IPLGRAPHFSAQSGA 272
            +PLGRAPH SAQSGA
Sbjct: 683  VPLGRAPHISAQSGA 697


>ref|XP_009335520.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Pyrus x bretschneideri]
          Length = 705

 Score =  618 bits (1593), Expect = e-173
 Identities = 360/749 (48%), Positives = 470/749 (62%), Gaps = 22/749 (2%)
 Frame = -2

Query: 2452 QQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGYPLCF 2273
            QQQ P+SV E VYKLQL+LL G++  + L+ AGSI+SRSDY DVVTER+IA+ CGYPLC 
Sbjct: 9    QQQQPMSVKETVYKLQLALLDGVKTLDQLYLAGSIISRSDYGDVVTERTIADHCGYPLCP 68

Query: 2272 NSLPP--NPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPLDL 2099
            ++LPP  + PRKG + +S K+ K+ DL ET MYCSS C   SKAFA   L EERC  LD 
Sbjct: 69   HALPPESSRPRKGHYRISLKEHKVYDLHETYMYCSSSCLIESKAFAQS-LSEERCDVLDY 127

Query: 2098 AKIRSVLKLFEEEDHD-------------------DSVLEGDVGDLGLSGLKIEEKTGTR 1976
             K+  VL+ F +   D                   +   E ++GDLG+S LKIEEK+  +
Sbjct: 128  GKVEKVLRAFGDVGWDKGEVGLGETGDLGISKLKIEEKSEAEIGDLGISKLKIEEKSEVQ 187

Query: 1975 VGDVDLEHWVGPSNAIEGYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFM 1796
            +GDV +   VGPSNA+EGYVP  +++SK   SK  K+ SK         KD++ NE+DFM
Sbjct: 188  LGDVGV---VGPSNAVEGYVPHNQRISKPLGSKKNKKGSKGKEAKTSGGKDMIFNEMDFM 244

Query: 1795 STIITNDEYSVSKMRSGLTDTKFDEKLREPKRNLSGDAAKNQFTVLETSSTTINGNDSER 1616
            S II +DEYSVSK+     +   +   +E +  ++                    NDSE+
Sbjct: 245  SCIIASDEYSVSKIPPSSGENGCETMFKESEEKVAHIK-----------------NDSEK 287

Query: 1615 KAIQSKGESSKIALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKP 1436
            K+ QS+G  SKI+ E++LG++E PSTS   ++    ST +A EE   +K + SN   L+ 
Sbjct: 288  KSKQSRGGKSKISKEDDLGIREAPSTSETSQTILIRSTKEAREEFPGDK-EKSNVPKLRS 346

Query: 1435 SLKPAGTKKLRRSVTWADEKTDSTGIRNLLEVREIEDMNLDMDKLSLNPSGAKKVSHTLT 1256
            SLKP+G KKL RSVTWADEK +              D    M K  L PS   +V  ++T
Sbjct: 347  SLKPSGAKKLNRSVTWADEKVEHR--------MNGYDTLGSMHKPLLKPSAENEVGCSVT 398

Query: 1255 QDTERIESRGSRSLCDIREMEDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEA 1076
               E+I+S  S+++C+++E++  KE   V  +  +   +   R  SAE CA+AL + +EA
Sbjct: 399  WSDEKIDSTKSKNVCEVKEVQGAKEGSGVLGNLELLNNE---RLESAEFCAMALRQVAEA 455

Query: 1075 VASGESDVTGAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEK 896
            VASGESDV  A+S AGII+ P                              DVD  EPE+
Sbjct: 456  VASGESDVNDAVSSAGIILLPRPDGADEEEPTE------------------DVDMLEPEQ 497

Query: 895  APQKWPIKPGTKHSDMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGR 716
            AP      PG  + D+FD E++WFD PPEG +LTLS F TMWN+LFTW TSSTLAYI GR
Sbjct: 498  APLP-RRNPGIPNFDLFDSENTWFDDPPEGFNLTLSPFLTMWNSLFTWITSSTLAYIYGR 556

Query: 715  DESLHEEYLSVNGREYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEK 536
            DES HEE+LS+NG++Y +KIVL  G SSEIK+TLA SLAR LPGVV QL+L  PIS+LE+
Sbjct: 557  DESFHEEFLSINGKDYSRKIVLAGGHSSEIKKTLAESLARTLPGVVSQLRLATPISSLEQ 616

Query: 535  GMGRLLDTMSFTEALPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRML-HKVLDGT 359
             M  +L+TM+F +ALPA RMKQW+V+VLL +E LSVCR+PAL PHM +RR L  KVLDG+
Sbjct: 617  EMSCMLETMTFVDALPAFRMKQWKVVVLLLLEGLSVCRIPALGPHMPDRRTLFDKVLDGS 676

Query: 358  QISAEEYEVMKDLIIPLGRAPHFSAQSGA 272
            QI+AE YE+MKD ++PLGRAP FSAQSGA
Sbjct: 677  QITAEHYELMKDHMLPLGRAPEFSAQSGA 705


>ref|XP_007145767.1| hypothetical protein PHAVU_007G265900g [Phaseolus vulgaris]
            gi|561018957|gb|ESW17761.1| hypothetical protein
            PHAVU_007G265900g [Phaseolus vulgaris]
          Length = 706

 Score =  616 bits (1588), Expect = e-173
 Identities = 352/740 (47%), Positives = 469/740 (63%), Gaps = 9/740 (1%)
 Frame = -2

Query: 2464 MAKEQQQSPISVSEAVYKLQLSLLQGIRDGNHLFAAGSIMSRSDYNDVVTERSIANLCGY 2285
            MAK++    +SV +AV+KLQ+ LL+GI++ + LFAAGS+MSRSDY D+VTERSI N+CGY
Sbjct: 1    MAKDKA---VSVKDAVFKLQMLLLEGIQNEDQLFAAGSLMSRSDYEDIVTERSITNVCGY 57

Query: 2284 PLCFNSLPPNPPRKGRFHLSRKDQKILDLRETNMYCSSDCFNGSKAFASGFLKEERCSPL 2105
            PLC N+LP   PRKG++ +S K+ K+ DL+ET M+CSS+C   SKAF SG L+ ERCS L
Sbjct: 58   PLCCNALPSERPRKGKYRISLKEHKVYDLQETYMFCSSNCVVSSKAF-SGILQAERCSAL 116

Query: 2104 DLAKIRSVLKLFEEEDHDDSVLEGDVGDLGLSGLKIEEKTGTRVGDVDLEHWVGPSNAIE 1925
            D  K+ +VL LFE  + + +      GDLGLS LKI+EKT T  G+V LE WVGPSNAIE
Sbjct: 117  DPEKLNNVLGLFENLNLEQTENVPKDGDLGLSNLKIQEKTVTTSGEVPLEQWVGPSNAIE 176

Query: 1924 GYVPQREQMSKQFASKSPKQESKANXXXXXXXKDLLVNEIDFMSTIITNDEYSVSKMRSG 1745
            GYVP+  +   +   K+ K+ SKA        KDL+ +E++F+STII  DEYSVSK   G
Sbjct: 177  GYVPKPRERESKGLRKNVKKGSKAGHGKSNNDKDLINSEMNFVSTIIMQDEYSVSKASPG 236

Query: 1744 LTDTKFDEKLR--------EPKRNLSGDAAKNQFTVLETSSTTINGNDSERKAIQSKGES 1589
             TDT    +++        E K  L     K++ ++ + SS+  +G       + +  + 
Sbjct: 237  QTDTTAHHQIKPTAVDRQQEEKVGLKV-VRKDEDSIQDLSSSFESGLH-----LSASEKG 290

Query: 1588 SKIALENELGVQELPSTSTRYKSGSHASTGQAEEEPQVEKADISNEATLKPSLKPAGTKK 1409
             +++   E+ V+  P+ + + K     S   +E    VEK   +N A     LK   T +
Sbjct: 291  KEVSKSCEVVVKSTPNLAIKKKDAHSVSI--SERHYDVEK---NNSARKSVQLK-GETSR 344

Query: 1408 LRRSVTWADEKTDSTGIRNLLEVREIEDMNLDMDKLSLNPSGAKKVSHTLTQDTERIESR 1229
            +  +   +    D   ++   +V ++  +     K SL  +G KK+S T+T   E+I   
Sbjct: 345  VTVNGDASTSNFDPDNVKEKFQVEKVGGLCETKLKSSLKSAGEKKLSRTVTWADEKINGA 404

Query: 1228 GSRSLCDIREMEDRKEAPDVSFSKYVEEKDDMLRFSSAEACAIALGEASEAVASGESDVT 1049
            G++ LC+++E  D  +  +   ++ V   +DMLR +SAEACAIAL +ASEAVASG+SD T
Sbjct: 405  GNKDLCEVKEFGDIIKESESVGNEDVANNEDMLRQASAEACAIALSQASEAVASGDSDAT 464

Query: 1048 GAMSEAGIIIFPHQXXXXXXXXXXXXXXXXXXXXXXXXXSLIDVDASEPEKAPQKWPIKP 869
             A+SEAGIII P                            + D D  + +    KWP KP
Sbjct: 465  DAVSEAGIIILPQPHDAVEEGT------------------MEDADILQNDSVTLKWPRKP 506

Query: 868  GTKHSDMFDPEDSWFDAPPEGLSLTLSSFATMWNALFTWTTSSTLAYICGRDESLHEEYL 689
            G    D F+ +DSWFDAPPEG SLTLS FA MWNA+F+W TS +LAYI GRDES HEEYL
Sbjct: 507  GISDIDFFESDDSWFDAPPEGFSLTLSPFANMWNAIFSWMTSYSLAYIYGRDESFHEEYL 566

Query: 688  SVNGREYPQKIVLGDGRSSEIKQTLAGSLARALPGVVVQLKLRIPISNLEKGMGRLLDTM 509
            SVNGREYP K+VL DGRSSEIKQT AG LARA P +V  L+L IPIS LE+GM  LL+TM
Sbjct: 567  SVNGREYPCKVVLSDGRSSEIKQTFAGCLARAFPALVAGLRLPIPISTLEQGMACLLETM 626

Query: 508  SFTEALPALRMKQWQVIVLLFIEALSVCRLPALTPHMTNRRML-HKVLDGTQISAEEYEV 332
            SF +ALPA R KQWQV+ LLF++ALSVCR+P+L  +MT+RR L HKVL G+QI  EEYE+
Sbjct: 627  SFVDALPAFRTKQWQVVALLFVDALSVCRIPSLISYMTDRRALFHKVLSGSQIGMEEYEI 686

Query: 331  MKDLIIPLGRAPHFSAQSGA 272
            +KDL++PLGRAPH S QSGA
Sbjct: 687  LKDLVVPLGRAPHISVQSGA 706