BLASTX nr result
ID: Zingiber25_contig00018270
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00018270
(348 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ... 112 5e-23
ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_... 112 7e-23
ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, I... 108 6e-22
dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare] 108 6e-22
ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, I... 107 1e-21
ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp.... 107 1e-21
gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 k... 107 1e-21
ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I... 107 2e-21
ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, ... 107 2e-21
ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, part... 106 3e-21
ref|XP_003579926.1| PREDICTED: DNA-directed RNA polymerases I, I... 105 8e-21
gb|ABK21111.1| unknown [Picea sitchensis] 104 1e-20
ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III ... 104 1e-20
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I... 103 2e-20
gb|ABK22384.1| unknown [Picea sitchensis] gi|116790944|gb|ABK257... 103 3e-20
gb|EOY26301.1| DNA directed RNA polymerase, 7 kDa subunit [Theob... 102 5e-20
ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutr... 102 7e-20
ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, I... 102 7e-20
gb|AFK41236.1| unknown [Medicago truncatula] 102 7e-20
ref|XP_006405406.1| hypothetical protein EUTSA_v10028022mg [Eutr... 101 9e-20
>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
DNA-directed RNA polymerase I, II, and III polypeptide
isoform 2, partial [Zea mays]
Length = 100
Score = 112 bits (280), Expect = 5e-23
Identities = 54/62 (87%), Positives = 55/62 (88%)
Frame = +1
Query: 55 RRKPLCVFEVMDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYE 234
RRK L MDP QPEPVSY+CGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYE
Sbjct: 40 RRKTL-ERSTMDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYE 98
Query: 235 AR 240
AR
Sbjct: 99 AR 100
>ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_001172391.1|
Os01g0530366 [Oryza sativa Japonica Group]
gi|297723715|ref|NP_001174221.1| Os05g0151800 [Oryza
sativa Japonica Group] gi|242048352|ref|XP_002461922.1|
hypothetical protein SORBIDRAFT_02g010660 [Sorghum
bicolor] gi|242078439|ref|XP_002443988.1| hypothetical
protein SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|514726952|ref|XP_004956106.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Setaria italica] gi|195609858|gb|ACG26759.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195620974|gb|ACG32317.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195645780|gb|ACG42358.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195646246|gb|ACG42591.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|218188380|gb|EEC70807.1|
hypothetical protein OsI_02267 [Oryza sativa Indica
Group] gi|222618595|gb|EEE54727.1| hypothetical protein
OsJ_02072 [Oryza sativa Japonica Group]
gi|241925299|gb|EER98443.1| hypothetical protein
SORBIDRAFT_02g010660 [Sorghum bicolor]
gi|241940338|gb|EES13483.1| hypothetical protein
SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|255673311|dbj|BAH91121.1| Os01g0530366 [Oryza sativa
Japonica Group] gi|255676033|dbj|BAH92949.1|
Os05g0151800 [Oryza sativa Japonica Group]
Length = 52
Score = 112 bits (279), Expect = 7e-23
Identities = 50/52 (96%), Positives = 51/52 (98%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPVSY+CGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
gi|357145250|ref|XP_003573577.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Brachypodium distachyon]
Length = 52
Score = 108 bits (271), Expect = 6e-22
Identities = 49/52 (94%), Positives = 50/52 (96%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPVSY+CGDCGAENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKSGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 52
Score = 108 bits (271), Expect = 6e-22
Identities = 49/52 (94%), Positives = 50/52 (96%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPVSY+CGDCGAENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Setaria italica]
Length = 52
Score = 107 bits (268), Expect = 1e-21
Identities = 47/52 (90%), Positives = 50/52 (96%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPVSY+CGDCG+ENTLKPGDVIQCR+CGYRILYKKRT RIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGSENTLKPGDVIQCRDCGYRILYKKRTHRIVQYEAR 52
>ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316495|gb|EFH46918.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 52
Score = 107 bits (268), Expect = 1e-21
Identities = 46/52 (88%), Positives = 50/52 (96%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
M+P QPEPV+Y+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1 MEPAQPEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 52
>gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
Length = 52
Score = 107 bits (268), Expect = 1e-21
Identities = 49/52 (94%), Positives = 50/52 (96%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPVSY+CGDCGAENTLKPGDVIQ RECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVIQWRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Vitis vinifera]
gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4 [Vitis
vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
product [Vitis vinifera]
Length = 51
Score = 107 bits (266), Expect = 2e-21
Identities = 50/52 (96%), Positives = 50/52 (96%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDP-QPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
12-like [Glycine max] gi|356560019|ref|XP_003548293.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 12 [Glycine max]
gi|567912183|ref|XP_006448405.1| hypothetical protein
CICLE_v10017429mg [Citrus clementina]
gi|255630274|gb|ACU15492.1| unknown [Glycine max]
gi|557551016|gb|ESR61645.1| hypothetical protein
CICLE_v10017429mg [Citrus clementina]
gi|561025849|gb|ESW24534.1| hypothetical protein
PHAVU_004G138700g [Phaseolus vulgaris]
Length = 51
Score = 107 bits (266), Expect = 2e-21
Identities = 50/52 (96%), Positives = 50/52 (96%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDP-QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, partial [Capsella rubella]
gi|482553592|gb|EOA17785.1| hypothetical protein
CARUB_v10006178mg, partial [Capsella rubella]
Length = 68
Score = 106 bits (265), Expect = 3e-21
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +1
Query: 58 RKPLCVFEVMDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 237
+ P F MD PEPV+Y+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRR+VQYEA
Sbjct: 8 KNPRIQFNTMDQPLPEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEA 67
Query: 238 R 240
R
Sbjct: 68 R 68
>ref|XP_003579926.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
Length = 52
Score = 105 bits (261), Expect = 8e-21
Identities = 48/52 (92%), Positives = 49/52 (94%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPVSY+CGDCGAENTLK GDVIQ RECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKSGDVIQSRECGYRILYKKRTRRIVQYEAR 52
>gb|ABK21111.1| unknown [Picea sitchensis]
Length = 53
Score = 104 bits (260), Expect = 1e-20
Identities = 47/50 (94%), Positives = 48/50 (96%)
Frame = +1
Query: 91 PLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
P PEPVSYICGDCGAEN+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 4 PAVPEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53
>ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Medicago truncatula] gi|355484947|gb|AES66150.1|
DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Medicago truncatula]
Length = 121
Score = 104 bits (259), Expect = 1e-20
Identities = 49/62 (79%), Positives = 53/62 (85%)
Frame = +1
Query: 55 RRKPLCVFEVMDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYE 234
+ K + VMDPL PEPVSY+CGDCG ENTLK GDVIQCR+CGYRILYKKRTRRIVQYE
Sbjct: 4 KSKECFIVGVMDPL-PEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYE 62
Query: 235 AR 240
AR
Sbjct: 63 AR 64
Score = 72.0 bits (175), Expect = 8e-11
Identities = 32/52 (61%), Positives = 39/52 (75%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP P+P+ Y+CGDCGAE L V+QC C Y+ILYKKRT R++QYEAR
Sbjct: 71 MDP-PPQPIRYLCGDCGAETPLYTDGVLQCCVCFYKILYKKRTHRVLQYEAR 121
>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cucumis sativus]
gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Cucumis sativus]
Length = 51
Score = 103 bits (258), Expect = 2e-20
Identities = 49/52 (94%), Positives = 49/52 (94%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPVSYICGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDP-QPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>gb|ABK22384.1| unknown [Picea sitchensis] gi|116790944|gb|ABK25799.1| unknown
[Picea sitchensis] gi|148909877|gb|ABR18025.1| unknown
[Picea sitchensis] gi|224284970|gb|ACN40214.1| unknown
[Picea sitchensis] gi|224286085|gb|ACN40753.1| unknown
[Picea sitchensis]
Length = 53
Score = 103 bits (256), Expect = 3e-20
Identities = 46/47 (97%), Positives = 47/47 (100%)
Frame = +1
Query: 100 PEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
PEPVSYICGDCGAEN+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 7 PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53
>gb|EOY26301.1| DNA directed RNA polymerase, 7 kDa subunit [Theobroma cacao]
Length = 51
Score = 102 bits (254), Expect = 5e-20
Identities = 48/52 (92%), Positives = 49/52 (94%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPV+YICGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDP-QPEPVTYICGDCGQENTLKHGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutrema salsugineum]
gi|567131670|ref|XP_006392764.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|567131674|ref|XP_006392765.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089341|gb|ESQ30049.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089342|gb|ESQ30050.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089343|gb|ESQ30051.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
Length = 51
Score = 102 bits (253), Expect = 7e-20
Identities = 46/52 (88%), Positives = 49/52 (94%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDP QPEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1 MDP-QPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Solanum lycopersicum]
Length = 52
Score = 102 bits (253), Expect = 7e-20
Identities = 47/52 (90%), Positives = 47/52 (90%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MD EPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>gb|AFK41236.1| unknown [Medicago truncatula]
Length = 51
Score = 102 bits (253), Expect = 7e-20
Identities = 47/52 (90%), Positives = 49/52 (94%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDPL PEPVSY+CGDCG ENTLK GDVIQCR+CGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPL-PEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR 51
>ref|XP_006405406.1| hypothetical protein EUTSA_v10028022mg [Eutrema salsugineum]
gi|557106544|gb|ESQ46859.1| hypothetical protein
EUTSA_v10028022mg [Eutrema salsugineum]
Length = 51
Score = 101 bits (252), Expect = 9e-20
Identities = 46/52 (88%), Positives = 49/52 (94%)
Frame = +1
Query: 85 MDPLQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 240
MDPL PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1 MDPL-PEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51