BLASTX nr result
ID: Zingiber24_contig00043519
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00043519
(340 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001062533.1| Os08g0564800 [Oryza sativa Japonica Group] g... 60 4e-07
ref|XP_006389371.1| hypothetical protein POPTR_0027s00430g [Popu... 59 7e-07
ref|XP_006389370.1| hypothetical protein POPTR_0027s00430g [Popu... 59 7e-07
ref|XP_006389369.1| hypothetical protein POPTR_0027s00430g [Popu... 59 7e-07
ref|XP_006389363.1| hypothetical protein POPTR_0027s00370g [Popu... 59 9e-07
ref|XP_004974264.1| PREDICTED: mediator of RNA polymerase II tra... 58 1e-06
ref|XP_004974263.1| PREDICTED: mediator of RNA polymerase II tra... 58 1e-06
ref|XP_004974262.1| PREDICTED: mediator of RNA polymerase II tra... 58 1e-06
ref|XP_004974261.1| PREDICTED: mediator of RNA polymerase II tra... 58 1e-06
ref|XP_003597955.1| hypothetical protein MTR_2g104400 [Medicago ... 58 1e-06
ref|XP_004296139.1| PREDICTED: uncharacterized protein LOC101297... 58 1e-06
ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II tra... 57 2e-06
ref|XP_002303194.2| hypothetical protein POPTR_0003s01980g, part... 56 4e-06
gb|EMJ06625.1| hypothetical protein PRUPE_ppa007709mg [Prunus pe... 56 4e-06
gb|EMJ06624.1| hypothetical protein PRUPE_ppa007709mg [Prunus pe... 56 4e-06
gb|AFW61658.1| hypothetical protein ZEAMMB73_514492 [Zea mays] 56 4e-06
gb|AFW61657.1| hypothetical protein ZEAMMB73_514492 [Zea mays] 56 4e-06
ref|XP_003573223.1| PREDICTED: uncharacterized protein LOC100840... 56 4e-06
gb|ABK95291.1| unknown [Populus trichocarpa] 56 4e-06
ref|XP_006660397.1| PREDICTED: mediator of RNA polymerase II tra... 56 6e-06
>ref|NP_001062533.1| Os08g0564800 [Oryza sativa Japonica Group]
gi|42409072|dbj|BAD10323.1| putative CTV.22 [Oryza
sativa Japonica Group] gi|45735914|dbj|BAD12946.1|
putative CTV.22 [Oryza sativa Japonica Group]
gi|113624502|dbj|BAF24447.1| Os08g0564800 [Oryza sativa
Japonica Group] gi|215700965|dbj|BAG92389.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|222641028|gb|EEE69160.1| hypothetical protein
OsJ_28313 [Oryza sativa Japonica Group]
Length = 1320
Score = 59.7 bits (143), Expect = 4e-07
Identities = 30/72 (41%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
+S++Q+E R RIVN I+D L +HLPV P ++ELQ + +RFEE ++T ++ +Y RKI
Sbjct: 38 RSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKI 97
Query: 213 SQRLQIIVSEIQ 248
S ++ + ++ Q
Sbjct: 98 SLKMLSMETKTQ 109
>ref|XP_006389371.1| hypothetical protein POPTR_0027s00430g [Populus trichocarpa]
gi|550312142|gb|ERP48285.1| hypothetical protein
POPTR_0027s00430g [Populus trichocarpa]
Length = 981
Score = 58.9 bits (141), Expect = 7e-07
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q + RQRIVN I++ L RHLP + EL+ V +RFEE ++T N+ +Y RKI
Sbjct: 23 RTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKVAVRFEEKIYTAATNQSDYLRKI 82
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN 287
S ++ + ++ Q+ I G+ N P++
Sbjct: 83 SLKMLTMETKSQNTIPTGNGNKPLD 107
>ref|XP_006389370.1| hypothetical protein POPTR_0027s00430g [Populus trichocarpa]
gi|550312141|gb|ERP48284.1| hypothetical protein
POPTR_0027s00430g [Populus trichocarpa]
Length = 942
Score = 58.9 bits (141), Expect = 7e-07
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q + RQRIVN I++ L RHLP + EL+ V +RFEE ++T N+ +Y RKI
Sbjct: 23 RTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKVAVRFEEKIYTAATNQSDYLRKI 82
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN 287
S ++ + ++ Q+ I G+ N P++
Sbjct: 83 SLKMLTMETKSQNTIPTGNGNKPLD 107
>ref|XP_006389369.1| hypothetical protein POPTR_0027s00430g [Populus trichocarpa]
gi|550312140|gb|ERP48283.1| hypothetical protein
POPTR_0027s00430g [Populus trichocarpa]
Length = 874
Score = 58.9 bits (141), Expect = 7e-07
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q + RQRIVN I++ L RHLP + EL+ V +RFEE ++T N+ +Y RKI
Sbjct: 23 RTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKVAVRFEEKIYTAATNQSDYLRKI 82
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN 287
S ++ + ++ Q+ I G+ N P++
Sbjct: 83 SLKMLTMETKSQNTIPTGNGNKPLD 107
>ref|XP_006389363.1| hypothetical protein POPTR_0027s00370g [Populus trichocarpa]
gi|550312134|gb|ERP48277.1| hypothetical protein
POPTR_0027s00370g [Populus trichocarpa]
Length = 1005
Score = 58.5 bits (140), Expect = 9e-07
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q + RQRIVN I++ L RHLP + EL+ + +RFEE ++T N+ +Y RKI
Sbjct: 23 RTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKI 82
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN 287
S ++ + ++ Q+ I G+ N P++
Sbjct: 83 SLKMLTMETKSQNTIPTGNGNKPLD 107
>ref|XP_004974264.1| PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X4 [Setaria italica]
Length = 1328
Score = 58.2 bits (139), Expect = 1e-06
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q E R RIVN I++ L +HLPV P + ELQ + +RFEE ++T N+ +Y RKI
Sbjct: 37 RTQLQPEARSRIVNKIMETLKKHLPVSVPEGLSELQKIAVRFEEKIYTAATNQSDYLRKI 96
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN*NPVYPS 308
S ++ + S+ + G+ N NP P+
Sbjct: 97 SLKMLSMESQTKTQQNPGNAQVIPNQNPPGPA 128
>ref|XP_004974263.1| PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X3 [Setaria italica]
Length = 1329
Score = 58.2 bits (139), Expect = 1e-06
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q E R RIVN I++ L +HLPV P + ELQ + +RFEE ++T N+ +Y RKI
Sbjct: 37 RTQLQPEARSRIVNKIMETLKKHLPVSVPEGLSELQKIAVRFEEKIYTAATNQSDYLRKI 96
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN*NPVYPS 308
S ++ + S+ + G+ N NP P+
Sbjct: 97 SLKMLSMESQTKTQQNPGNAQVIPNQNPPGPA 128
>ref|XP_004974262.1| PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X2 [Setaria italica]
Length = 1361
Score = 58.2 bits (139), Expect = 1e-06
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q E R RIVN I++ L +HLPV P + ELQ + +RFEE ++T N+ +Y RKI
Sbjct: 37 RTQLQPEARSRIVNKIMETLKKHLPVSVPEGLSELQKIAVRFEEKIYTAATNQSDYLRKI 96
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN*NPVYPS 308
S ++ + S+ + G+ N NP P+
Sbjct: 97 SLKMLSMESQTKTQQNPGNAQVIPNQNPPGPA 128
>ref|XP_004974261.1| PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X1 [Setaria italica]
Length = 1362
Score = 58.2 bits (139), Expect = 1e-06
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q E R RIVN I++ L +HLPV P + ELQ + +RFEE ++T N+ +Y RKI
Sbjct: 37 RTQLQPEARSRIVNKIMETLKKHLPVSVPEGLSELQKIAVRFEEKIYTAATNQSDYLRKI 96
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN*NPVYPS 308
S ++ + S+ + G+ N NP P+
Sbjct: 97 SLKMLSMESQTKTQQNPGNAQVIPNQNPPGPA 128
>ref|XP_003597955.1| hypothetical protein MTR_2g104400 [Medicago truncatula]
gi|355487003|gb|AES68206.1| hypothetical protein
MTR_2g104400 [Medicago truncatula]
Length = 1289
Score = 58.2 bits (139), Expect = 1e-06
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
+ ++Q E RQRIVN I+D L RHLPV +HEL+ + RFEE ++T ++ +Y RKI
Sbjct: 22 RGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQRFEEKIYTAATSQSDYLRKI 81
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN*NPVYPS 308
S ++ + ++ Q G I++ I N V PS
Sbjct: 82 SLKMLTMETKSQ-----GTISNNIPPNQVGPS 108
>ref|XP_004296139.1| PREDICTED: uncharacterized protein LOC101297525 [Fragaria vesca
subsp. vesca]
Length = 2234
Score = 57.8 bits (138), Expect = 1e-06
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
+S++Q + RQRIVN I+D L RHLP +HEL+ + +RFEE ++T ++ +Y RKI
Sbjct: 908 RSQLQADSRQRIVNKIMDTLKRHLPFSGQEGLHELKKIAVRFEEKIYTAATSQSDYLRKI 967
Query: 213 SQRLQIIVSEIQH 251
S ++ + S+ Q+
Sbjct: 968 SLKMLTMESKSQN 980
>ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like, partial [Cucumis sativus]
Length = 589
Score = 57.4 bits (137), Expect = 2e-06
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
+S++Q + RQRIVN I++ L RHLPV + EL+ + +RFEE + T ++ +Y RKI
Sbjct: 22 RSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKI 81
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN*NPVYP 305
S ++ + ++ Q P + +P+ NP+ P
Sbjct: 82 SLKMLTMETKTQPP-----MGNPLPSNPMVP 107
>ref|XP_002303194.2| hypothetical protein POPTR_0003s01980g, partial [Populus
trichocarpa] gi|550342176|gb|EEE78173.2| hypothetical
protein POPTR_0003s01980g, partial [Populus trichocarpa]
Length = 145
Score = 56.2 bits (134), Expect = 4e-06
Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q + RQRIVN I++ L RHLP + EL+ + +RFEE ++T ++ +Y RKI
Sbjct: 51 RTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSDYLRKI 110
Query: 213 SQRLQIIVSEIQHPIWLGDINHPI 284
S ++ I + Q+ I G+ N P+
Sbjct: 111 SLKMLTIETRSQNIIPTGNGNKPL 134
>gb|EMJ06625.1| hypothetical protein PRUPE_ppa007709mg [Prunus persica]
Length = 358
Score = 56.2 bits (134), Expect = 4e-06
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
+S++Q + RQRIVN I D L RHLP + E++ + +RFEE +HT ++ +Y RKI
Sbjct: 109 RSQLQPDSRQRIVNKITDTLKRHLPFSGQEGLQEIRKIAVRFEEKIHTAATSQSDYLRKI 168
Query: 213 SQRLQIIVSEIQH 251
S ++ + + QH
Sbjct: 169 SLKMLSMETNSQH 181
>gb|EMJ06624.1| hypothetical protein PRUPE_ppa007709mg [Prunus persica]
Length = 357
Score = 56.2 bits (134), Expect = 4e-06
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
+S++Q + RQRIVN I D L RHLP + E++ + +RFEE +HT ++ +Y RKI
Sbjct: 109 RSQLQPDSRQRIVNKITDTLKRHLPFSGQEGLQEIRKIAVRFEEKIHTAATSQSDYLRKI 168
Query: 213 SQRLQIIVSEIQH 251
S ++ + + QH
Sbjct: 169 SLKMLSMETNSQH 181
>gb|AFW61658.1| hypothetical protein ZEAMMB73_514492 [Zea mays]
Length = 1305
Score = 56.2 bits (134), Expect = 4e-06
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q E R RIVN I++ L +HLPV P + EL + +RFEE ++T ++ +Y RKI
Sbjct: 33 RTQLQPEARHRIVNKIMETLKKHLPVSVPEGLTELHKIAVRFEEKIYTAATSQSDYLRKI 92
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN*NPVYPSM 311
S ++ + S+ + G++ N NP P +
Sbjct: 93 SLKMLSMESQTKTQQNPGNVQVIPNQNPPAPGL 125
>gb|AFW61657.1| hypothetical protein ZEAMMB73_514492 [Zea mays]
Length = 1306
Score = 56.2 bits (134), Expect = 4e-06
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q E R RIVN I++ L +HLPV P + EL + +RFEE ++T ++ +Y RKI
Sbjct: 33 RTQLQPEARHRIVNKIMETLKKHLPVSVPEGLTELHKIAVRFEEKIYTAATSQSDYLRKI 92
Query: 213 SQRLQIIVSEIQHPIWLGDINHPIN*NPVYPSM 311
S ++ + S+ + G++ N NP P +
Sbjct: 93 SLKMLSMESQTKTQQNPGNVQVIPNQNPPAPGL 125
>ref|XP_003573223.1| PREDICTED: uncharacterized protein LOC100840942 [Brachypodium
distachyon]
Length = 1296
Score = 56.2 bits (134), Expect = 4e-06
Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q E R RIVN I++ L +HLPV P ++ELQ + +RFEE ++T ++ +Y RKI
Sbjct: 33 RAQLQPEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKI 92
Query: 213 SQRLQIIVSEIQ 248
S ++ + ++ Q
Sbjct: 93 SLKMLSMETKTQ 104
>gb|ABK95291.1| unknown [Populus trichocarpa]
Length = 101
Score = 56.2 bits (134), Expect = 4e-06
Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q + RQRIVN I++ L RHLP + EL+ + +RFEE ++T ++ +Y RKI
Sbjct: 7 RTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSDYLRKI 66
Query: 213 SQRLQIIVSEIQHPIWLGDINHPI 284
S ++ I + Q+ I G+ N P+
Sbjct: 67 SLKMLTIETRSQNIIPTGNGNKPL 90
>ref|XP_006660397.1| PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like, partial [Oryza brachyantha]
Length = 1297
Score = 55.8 bits (133), Expect = 6e-06
Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Frame = +3
Query: 42 KSKIQTELRQRIVNDIVDLLMRHLPVDFP--VHELQNVIIRFEE-MHTTVANKDEYFRKI 212
++++Q E R RIVN I++ L +HLPV P ++ELQ + +RFEE ++T ++ +Y RKI
Sbjct: 9 RAQLQPEARTRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKI 68
Query: 213 SQRLQIIVSEIQ 248
S ++ + ++ Q
Sbjct: 69 SLKMLSMETKTQ 80