BLASTX nr result
ID: Zingiber23_contig00052096
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00052096
(317 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_007475694.1| RNA polymerase beta' subunit [Zingiber spect... 222 5e-56
gb|AGE93360.1| RNA polymerase beta' subunit [Alpinia zerumbet] 215 6e-54
ref|YP_007475609.1| RNA polymerase beta' subunit [Heliconia coll... 213 3e-53
ref|YP_008854501.1| RNA polymerase beta' subunit [Ravenala madag... 210 1e-52
gb|ABD93782.1| RNA polymerase beta chain [Strelitzia reginae] 208 5e-52
ref|YP_008854415.1| RNA polymerase beta' subunit [Musa textilis]... 207 1e-51
ref|YP_008854584.1| RNA polymerase beta' subunit [Curcuma roscoe... 204 7e-51
gb|AHA12745.1| RNA polymerase beta' subunit [Canna indica] 204 7e-51
emb|CCW72365.1| rpoC2 (chloroplast) [Musa acuminata subsp. malac... 204 1e-50
gb|ABU85465.1| RNA polymerase beta subunit [Musa acuminata] 204 1e-50
gb|AHA12829.1| RNA polymerase beta' subunit [Maranta leuconeura] 197 9e-49
gb|ABD93783.1| RNA polymerase beta chain [Maranta leuconeura] 197 9e-49
gb|AHA13172.1| RNA polymerase beta' subunit [Thaumatococcus dani... 197 2e-48
gb|AHA12673.1| RNA polymerase beta' subunit [Orchidantha fimbriata] 194 8e-48
gb|AAZ03983.1| RNA polymerase beta'' chain [Typha latifolia] 192 3e-47
gb|AEZ49480.1| RNA polymerase beta'' subunit, partial [Fosterell... 192 3e-47
ref|YP_003433965.1| RNA polymerase beta' subunit [Typha latifoli... 192 3e-47
gb|AEZ49472.1| RNA polymerase beta'' subunit, partial [Brocchini... 192 4e-47
gb|AEZ49492.1| RNA polymerase beta'' subunit, partial [Pitcairni... 192 5e-47
gb|AEZ49488.1| RNA polymerase beta'' subunit, partial [Navia sax... 192 5e-47
>ref|YP_007475694.1| RNA polymerase beta' subunit [Zingiber spectabile]
gi|449326174|gb|AGE92759.1| RNA polymerase beta' subunit
[Zingiber spectabile]
Length = 1380
Score = 222 bits (565), Expect = 5e-56
Identities = 103/105 (98%), Positives = 104/105 (99%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS
Sbjct: 996 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 1055
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TII+LGQFFCENICLFKYKSHIKKSGQIIIVDVD LIIRSAKPYL
Sbjct: 1056 TIINLGQFFCENICLFKYKSHIKKSGQIIIVDVDTLIIRSAKPYL 1100
>gb|AGE93360.1| RNA polymerase beta' subunit [Alpinia zerumbet]
Length = 1375
Score = 215 bits (547), Expect = 6e-54
Identities = 99/105 (94%), Positives = 103/105 (98%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLLGNF+QTFQVL+VLKYCLIDENRRIYNPDPCSNIILN FHLNWHFLHHDYWEETS
Sbjct: 996 KKYLLLGNFKQTFQVLQVLKYCLIDENRRIYNPDPCSNIILNSFHLNWHFLHHDYWEETS 1055
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TIISLGQFFCEN+CLFKY+ HIKKSGQIIIVDVDALIIRSAKPYL
Sbjct: 1056 TIISLGQFFCENVCLFKYEPHIKKSGQIIIVDVDALIIRSAKPYL 1100
>ref|YP_007475609.1| RNA polymerase beta' subunit [Heliconia collinsiana]
gi|449326088|gb|AGE92674.1| RNA polymerase beta' subunit
[Heliconia collinsiana]
Length = 1384
Score = 213 bits (541), Expect = 3e-53
Identities = 97/105 (92%), Positives = 102/105 (97%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NFQQTFQVL+VLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS
Sbjct: 995 KKYLLLDNFQQTFQVLQVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 1054
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TIISLGQFFCEN+CLFKY+ H+KKSGQIIIV VD+LIIRSAKPYL
Sbjct: 1055 TIISLGQFFCENVCLFKYEPHVKKSGQIIIVHVDSLIIRSAKPYL 1099
>ref|YP_008854501.1| RNA polymerase beta' subunit [Ravenala madagascariensis]
gi|557636989|gb|AHA12590.1| RNA polymerase beta' subunit
[Ravenala madagascariensis]
Length = 1372
Score = 210 bits (535), Expect = 1e-52
Identities = 95/105 (90%), Positives = 102/105 (97%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NFQQTFQVL+VLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS
Sbjct: 1005 KKYLLLDNFQQTFQVLQVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 1064
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TIISLGQFFCEN+CLFKY+ H+KKSGQIIIV V++L+IRSAKPYL
Sbjct: 1065 TIISLGQFFCENVCLFKYEPHVKKSGQIIIVHVNSLVIRSAKPYL 1109
>gb|ABD93782.1| RNA polymerase beta chain [Strelitzia reginae]
Length = 853
Score = 208 bits (530), Expect = 5e-52
Identities = 94/105 (89%), Positives = 101/105 (96%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NFQQTFQVL+VLKYCLIDENRRIYNPDPCSN ILNPFHLNWHFLHHDYWEETS
Sbjct: 544 KKYLLLDNFQQTFQVLQVLKYCLIDENRRIYNPDPCSNXILNPFHLNWHFLHHDYWEETS 603
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TIISLGQFFCEN+CLFKY+ H+KKSGQIIIV V++L+IRSAKPYL
Sbjct: 604 TIISLGQFFCENVCLFKYEPHVKKSGQIIIVHVNSLVIRSAKPYL 648
>ref|YP_008854415.1| RNA polymerase beta' subunit [Musa textilis]
gi|557636902|gb|AHA12504.1| RNA polymerase beta' subunit
[Musa textilis]
Length = 1364
Score = 207 bits (527), Expect = 1e-51
Identities = 93/105 (88%), Positives = 101/105 (96%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NFQQTFQVL+VLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS
Sbjct: 995 KKYLLLDNFQQTFQVLQVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 1054
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
T IS+GQFFCEN+CLFKY+ H++KSGQIIIV VD+L+IRSAKPYL
Sbjct: 1055 TKISIGQFFCENVCLFKYEPHVEKSGQIIIVHVDSLVIRSAKPYL 1099
>ref|YP_008854584.1| RNA polymerase beta' subunit [Curcuma roscoeana]
gi|557637491|gb|AHA13086.1| RNA polymerase beta' subunit
[Curcuma roscoeana]
Length = 1375
Score = 204 bits (520), Expect = 7e-51
Identities = 97/105 (92%), Positives = 99/105 (94%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLLGNFQQTFQVL KYCLIDENRR YNPDPCSNIILNPFHLNWHF+HHDYWEETS
Sbjct: 994 KKYLLLGNFQQTFQVL---KYCLIDENRRFYNPDPCSNIILNPFHLNWHFIHHDYWEETS 1050
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TIISLGQFFCENICLFKYK +IKKSGQIIIVDVDALIIRSAK YL
Sbjct: 1051 TIISLGQFFCENICLFKYKPYIKKSGQIIIVDVDALIIRSAKSYL 1095
>gb|AHA12745.1| RNA polymerase beta' subunit [Canna indica]
Length = 1371
Score = 204 bits (520), Expect = 7e-51
Identities = 91/104 (87%), Positives = 100/104 (96%)
Frame = +2
Query: 5 KYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETST 184
KYLLL NFQQTFQVLEVLKYCLIDENRR+YNPDPCS+IILNPFHLNWHFLHHDYWEE ST
Sbjct: 988 KYLLLDNFQQTFQVLEVLKYCLIDENRRVYNPDPCSDIILNPFHLNWHFLHHDYWEEIST 1047
Query: 185 IISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
+ISLGQFFCEN+CLFK++ H+KKSGQIIIV VD+L+IRSAKPYL
Sbjct: 1048 VISLGQFFCENVCLFKHEPHVKKSGQIIIVHVDSLVIRSAKPYL 1091
>emb|CCW72365.1| rpoC2 (chloroplast) [Musa acuminata subsp. malaccensis]
Length = 1364
Score = 204 bits (518), Expect = 1e-50
Identities = 92/105 (87%), Positives = 99/105 (94%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NFQQTFQVL+VLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS
Sbjct: 995 KKYLLLDNFQQTFQVLQVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 1054
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
I LGQFFCEN+CLFKY+ H++KSGQIIIV VD+L+IRSAKPYL
Sbjct: 1055 KKIRLGQFFCENVCLFKYEPHVEKSGQIIIVHVDSLVIRSAKPYL 1099
>gb|ABU85465.1| RNA polymerase beta subunit [Musa acuminata]
Length = 1359
Score = 204 bits (518), Expect = 1e-50
Identities = 92/105 (87%), Positives = 99/105 (94%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NFQQTFQVL+VLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS
Sbjct: 995 KKYLLLDNFQQTFQVLQVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 1054
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
I LGQFFCEN+CLFKY+ H++KSGQIIIV VD+L+IRSAKPYL
Sbjct: 1055 KKIRLGQFFCENVCLFKYEPHVEKSGQIIIVHVDSLVIRSAKPYL 1099
>gb|AHA12829.1| RNA polymerase beta' subunit [Maranta leuconeura]
Length = 1402
Score = 197 bits (502), Expect = 9e-49
Identities = 91/107 (85%), Positives = 99/107 (92%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NFQQTF+VL+VLKYCLIDENRRIYNPDPCSNII NPFHLNWHF HHDYWEETS
Sbjct: 998 KKYLLLDNFQQTFKVLQVLKYCLIDENRRIYNPDPCSNIIWNPFHLNWHFFHHDYWEETS 1057
Query: 182 TI--ISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TI ISLGQFFCEN+CLFK + H+KKSGQI+IV VD+L+IRSAKPYL
Sbjct: 1058 TIIRISLGQFFCENVCLFKREPHVKKSGQILIVHVDSLVIRSAKPYL 1104
>gb|ABD93783.1| RNA polymerase beta chain [Maranta leuconeura]
Length = 849
Score = 197 bits (502), Expect = 9e-49
Identities = 91/107 (85%), Positives = 99/107 (92%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NFQQTF+VL+VLKYCLIDENRRIYNPDPCSNII NPFHLNWHF HHDYWEETS
Sbjct: 538 KKYLLLDNFQQTFKVLQVLKYCLIDENRRIYNPDPCSNIIWNPFHLNWHFFHHDYWEETS 597
Query: 182 TI--ISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TI ISLGQFFCEN+CLFK + H+KKSGQI+IV VD+L+IRSAKPYL
Sbjct: 598 TIIRISLGQFFCENVCLFKREPHVKKSGQILIVHVDSLVIRSAKPYL 644
>gb|AHA13172.1| RNA polymerase beta' subunit [Thaumatococcus daniellii]
Length = 1386
Score = 197 bits (500), Expect = 2e-48
Identities = 90/105 (85%), Positives = 98/105 (93%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NFQQTFQV +VLKYCLIDENRRIYNPDP SNII NPFHLNWHFLHHDYWEETS
Sbjct: 999 KKYLLLDNFQQTFQVPQVLKYCLIDENRRIYNPDPWSNIIFNPFHLNWHFLHHDYWEETS 1058
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TIISLGQFF EN+CLFK++ H+KKSGQI+IV VD+L+IRSAKPYL
Sbjct: 1059 TIISLGQFFFENVCLFKHEPHVKKSGQILIVHVDSLVIRSAKPYL 1103
>gb|AHA12673.1| RNA polymerase beta' subunit [Orchidantha fimbriata]
Length = 1376
Score = 194 bits (494), Expect = 8e-48
Identities = 88/105 (83%), Positives = 99/105 (94%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NFQQTFQVL+VLKYCLIDENRRIYNP+P SNIILNPF+LNWHFL H+YWEETS
Sbjct: 996 KKYLLLDNFQQTFQVLQVLKYCLIDENRRIYNPNPWSNIILNPFYLNWHFLDHNYWEETS 1055
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
++SLGQFFCEN+CLFKY+ H+KKSGQIIIV VD+L+IRSAKPYL
Sbjct: 1056 RMVSLGQFFCENVCLFKYEPHVKKSGQIIIVHVDSLVIRSAKPYL 1100
>gb|AAZ03983.1| RNA polymerase beta'' chain [Typha latifolia]
Length = 1387
Score = 192 bits (489), Expect = 3e-47
Identities = 88/105 (83%), Positives = 98/105 (93%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NF++TFQVL+VLKY LIDEN RIYNPDPCSNIILNPFHL+W FLHHDYWEE S
Sbjct: 998 KKYLLLDNFKETFQVLQVLKYFLIDENGRIYNPDPCSNIILNPFHLDWCFLHHDYWEEAS 1057
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TIISLGQF CEN+CLFKY+ HIKKSGQI+IV+VD+L+IRSAKPYL
Sbjct: 1058 TIISLGQFICENVCLFKYEPHIKKSGQILIVNVDSLVIRSAKPYL 1102
>gb|AEZ49480.1| RNA polymerase beta'' subunit, partial [Fosterella caulescens]
Length = 1388
Score = 192 bits (489), Expect = 3e-47
Identities = 88/105 (83%), Positives = 97/105 (92%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL N +Q FQVL+VLKYCLIDENRRIYNPDPCSNIILNPFH NW FLHHDY EETS
Sbjct: 999 KKYLLLDNLKQIFQVLQVLKYCLIDENRRIYNPDPCSNIILNPFHFNWCFLHHDYCEETS 1058
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
T ISLGQFFCEN+CLFKY+ H+KKSGQI+IV+VD+L+IRSAKPYL
Sbjct: 1059 TKISLGQFFCENVCLFKYEPHVKKSGQILIVNVDSLVIRSAKPYL 1103
>ref|YP_003433965.1| RNA polymerase beta' subunit [Typha latifolia]
gi|281371762|gb|ADA63689.1| RNA polymerase beta' subunit
[Typha latifolia]
Length = 1383
Score = 192 bits (489), Expect = 3e-47
Identities = 88/105 (83%), Positives = 98/105 (93%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL NF++TFQVL+VLKY LIDEN RIYNPDPCSNIILNPFHL+W FLHHDYWEE S
Sbjct: 994 KKYLLLDNFKETFQVLQVLKYFLIDENGRIYNPDPCSNIILNPFHLDWCFLHHDYWEEAS 1053
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
TIISLGQF CEN+CLFKY+ HIKKSGQI+IV+VD+L+IRSAKPYL
Sbjct: 1054 TIISLGQFICENVCLFKYEPHIKKSGQILIVNVDSLVIRSAKPYL 1098
>gb|AEZ49472.1| RNA polymerase beta'' subunit, partial [Brocchinia micrantha]
Length = 1388
Score = 192 bits (488), Expect = 4e-47
Identities = 88/105 (83%), Positives = 97/105 (92%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL N +QTFQVL+VLKYCLIDENRRIYNPDPCSNIILNPFHLNW FLHHDY EETS
Sbjct: 999 KKYLLLDNLKQTFQVLQVLKYCLIDENRRIYNPDPCSNIILNPFHLNWCFLHHDYCEETS 1058
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
T I LGQF CEN+CLFKY+ H+KKSGQI+IV+VD+L+IRSAKPYL
Sbjct: 1059 TKICLGQFICENVCLFKYEPHVKKSGQILIVNVDSLVIRSAKPYL 1103
>gb|AEZ49492.1| RNA polymerase beta'' subunit, partial [Pitcairnia feliciana]
Length = 1389
Score = 192 bits (487), Expect = 5e-47
Identities = 88/105 (83%), Positives = 97/105 (92%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL N +Q FQVL+VLKYCLIDENRRIYNPDPCSNIILNPFHLNW FLHHDY EETS
Sbjct: 1000 KKYLLLDNLKQIFQVLQVLKYCLIDENRRIYNPDPCSNIILNPFHLNWCFLHHDYCEETS 1059
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
T ISLGQF CEN+CLFKY+ H+KKSGQI+IV+VD+L+IRSAKPYL
Sbjct: 1060 TKISLGQFICENVCLFKYEPHVKKSGQILIVNVDSLVIRSAKPYL 1104
>gb|AEZ49488.1| RNA polymerase beta'' subunit, partial [Navia saxicola]
Length = 1387
Score = 192 bits (487), Expect = 5e-47
Identities = 88/105 (83%), Positives = 97/105 (92%)
Frame = +2
Query: 2 KKYLLLGNFQQTFQVLEVLKYCLIDENRRIYNPDPCSNIILNPFHLNWHFLHHDYWEETS 181
KKYLLL N +Q FQVL+VLKYCLIDENRRIYNPDPCSNIILNPFHLNW FLHHDY EETS
Sbjct: 998 KKYLLLDNLKQIFQVLQVLKYCLIDENRRIYNPDPCSNIILNPFHLNWCFLHHDYCEETS 1057
Query: 182 TIISLGQFFCENICLFKYKSHIKKSGQIIIVDVDALIIRSAKPYL 316
T ISLGQF CEN+CLFKY+ H+KKSGQI+IV+VD+L+IRSAKPYL
Sbjct: 1058 TKISLGQFICENVCLFKYEPHVKKSGQILIVNVDSLVIRSAKPYL 1102