BLASTX nr result
ID: Zingiber23_contig00052067
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00052067
(263 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN63293.1| hypothetical protein VITISV_025722 [Vitis vinifera] 119 6e-25
emb|CAN79451.1| hypothetical protein VITISV_001677 [Vitis vinifera] 70 3e-10
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 65 9e-09
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 65 9e-09
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 65 1e-08
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 64 2e-08
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 64 2e-08
gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subc... 64 3e-08
emb|CAE04897.3| OSJNBa0042I15.19 [Oryza sativa Japonica Group] 64 3e-08
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc... 63 4e-08
gb|ABA97308.2| retrotransposon protein, putative, Ty1-copia subc... 63 4e-08
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 62 6e-08
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 62 6e-08
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 62 6e-08
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz... 62 1e-07
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc... 62 1e-07
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera] 62 1e-07
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc... 61 2e-07
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 61 2e-07
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 60 2e-07
>emb|CAN63293.1| hypothetical protein VITISV_025722 [Vitis vinifera]
Length = 347
Score = 119 bits (297), Expect = 6e-25
Identities = 57/88 (64%), Positives = 69/88 (78%), Gaps = 2/88 (2%)
Frame = +3
Query: 3 GGKGHIKRNCPEIKKY--VAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWI 176
G KGH+KR+CPE KK V+E +V EE+SESGDGDMLSV SSS+ LTD+WI
Sbjct: 127 GKKGHMKRDCPEKKKRGSVSENKEGSSKSANVVTEEDSESGDGDMLSVSSSSDHLTDSWI 186
Query: 177 LDSACSYHMTPNKEWFDTYRAVDSGSVL 260
LDS CSYHMTPNK+WF+TYR+V+SGS+L
Sbjct: 187 LDSTCSYHMTPNKDWFNTYRSVNSGSIL 214
>emb|CAN79451.1| hypothetical protein VITISV_001677 [Vitis vinifera]
Length = 805
Score = 70.1 bits (170), Expect = 3e-10
Identities = 30/45 (66%), Positives = 37/45 (82%)
Frame = +3
Query: 126 DMLSVMSSSEQLTDAWILDSACSYHMTPNKEWFDTYRAVDSGSVL 260
+ L + + LTD WILDSACSYHMTPNK+WF+TYR+V+SGSVL
Sbjct: 130 ETLDLEEITNHLTDYWILDSACSYHMTPNKDWFNTYRSVNSGSVL 174
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3
Query: 42 KKYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEW 221
+KY+ + IV +E S D ++L + Q +D WILD+AC+YHM PN++W
Sbjct: 202 RKYIPKGKKEEEGKAAIVTDEKS---DAELLVAYAGCAQTSDQWILDTACTYHMCPNRDW 258
Query: 222 FDTYRAVDSGSVL 260
F TY AV G+VL
Sbjct: 259 FATYEAVQGGTVL 271
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 65.1 bits (157), Expect = 9e-09
Identities = 29/73 (39%), Positives = 44/73 (60%)
Frame = +3
Query: 42 KKYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEW 221
+KY+++ +V +E S D ++L + Q +D WILD+AC+YHM PN++W
Sbjct: 212 EKYISKGKKEEEGKAAVVTDEKS---DAELLVAYADCAQTSDQWILDTACTYHMCPNRDW 268
Query: 222 FDTYRAVDSGSVL 260
F TY AV G+VL
Sbjct: 269 FATYEAVQGGTVL 281
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 64.7 bits (156), Expect = 1e-08
Identities = 29/73 (39%), Positives = 43/73 (58%)
Frame = +3
Query: 42 KKYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEW 221
+KY+ + +V +E S D ++L + Q +D WILD+AC+YHM PN++W
Sbjct: 169 RKYIPKGKKEEEGKAAVVTDEKS---DAELLVAYAGCAQTSDQWILDTACTYHMCPNRDW 225
Query: 222 FDTYRAVDSGSVL 260
F TY AV G+VL
Sbjct: 226 FATYEAVQGGTVL 238
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 64.3 bits (155), Expect = 2e-08
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +3
Query: 45 KYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEWF 224
KYV + +V +E S D ++L + Q +D WILD+AC+YHM PN++WF
Sbjct: 93 KYVPKGKKEEEGKAAVVTDEKS---DAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWF 149
Query: 225 DTYRAVDSGSVL 260
TY AV G+VL
Sbjct: 150 ATYEAVQGGTVL 161
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 64.3 bits (155), Expect = 2e-08
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +3
Query: 45 KYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEWF 224
KYV + +V +E S D ++L + Q +D WILD+AC+YHM PN++WF
Sbjct: 93 KYVPKGKKEEEGKAAVVTDEKS---DAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWF 149
Query: 225 DTYRAVDSGSVL 260
TY AV G+VL
Sbjct: 150 ATYEAVQGGTVL 161
>gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 546
Score = 63.5 bits (153), Expect = 3e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Frame = +3
Query: 45 KYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEWF 224
KY+ + +V +E S D ++L + Q +D WILD+AC+YHM PN++WF
Sbjct: 78 KYIPKGKKEEEGKAAVVTDEKS---DAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWF 134
Query: 225 DTYRAVDSGSVL 260
TY AV G+VL
Sbjct: 135 VTYEAVQGGTVL 146
>emb|CAE04897.3| OSJNBa0042I15.19 [Oryza sativa Japonica Group]
Length = 478
Score = 63.5 bits (153), Expect = 3e-08
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 12 GHIKRNCPEIKKYVAEXXXXXXXXXXIVEEENSESGDG-DMLSVMSSSEQLTDAWILDSA 188
GHI+R CP +K + N DG D+L++ S+ + +AWILDSA
Sbjct: 285 GHIRRECPTLK---------GKAKANVATSSNDSDSDGCDLLTMSSAQSKDAEAWILDSA 335
Query: 189 CSYHMTPNKEWFDTYRAVDSGSV 257
S+H+TP KEWF +Y++ + G V
Sbjct: 336 SSFHVTPRKEWFSSYKSGEFGFV 358
>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 415
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +3
Query: 12 GHIKRNCPEIKKYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSAC 191
GHI+RNCP +KK ++S+SG ++L+V S E +AW+LDSA
Sbjct: 231 GHIRRNCPLLKK------RKGGIASLAARGDDSDSGSHEILTV--SDEMSGEAWMLDSAS 282
Query: 192 SYHMTPNKEWFDTYRAVDSGSV 257
SYH+T +EWF +Y++ D G V
Sbjct: 283 SYHVTSKREWFSSYKSGDFGVV 304
>gb|ABA97308.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 407
Score = 63.2 bits (152), Expect = 4e-08
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = +3
Query: 12 GHIKRNCPEIKKYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSAC 191
GHI R CP +K + +S+S D+L++ S+ + +AWILDSA
Sbjct: 214 GHISRECPTLK--------GKAKANTVTSSNDSDSDGCDLLTMSSAQSKDAEAWILDSAS 265
Query: 192 SYHMTPNKEWFDTYRAVDSGSV 257
S+H+TP KEWF +Y++ + G V
Sbjct: 266 SFHVTPRKEWFSSYKSGEFGFV 287
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 62.4 bits (150), Expect = 6e-08
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +3
Query: 45 KYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEWF 224
KY+ + +V +E S D ++L + Q +D WILD+AC+YHM PN++WF
Sbjct: 261 KYIPKGKKEEEGKAAVVTDEKS---DAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWF 317
Query: 225 DTYRAVDSGSVL 260
TY V G+VL
Sbjct: 318 ATYEVVQGGTVL 329
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 62.4 bits (150), Expect = 6e-08
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +3
Query: 45 KYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEWF 224
KY+ + +V +E S D ++L + Q +D WILD+AC+YHM PN++WF
Sbjct: 78 KYIPKGKKEDEGKAAVVTDEKS---DAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWF 134
Query: 225 DTYRAVDSGSVL 260
TY V G+VL
Sbjct: 135 ATYEVVQGGTVL 146
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 62.4 bits (150), Expect = 6e-08
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +3
Query: 45 KYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEWF 224
KY+ + +V +E S D ++L + Q +D WILD+AC+YHM PN++WF
Sbjct: 246 KYIPKGKKEDEGKAAVVTDEKS---DAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWF 302
Query: 225 DTYRAVDSGSVL 260
TY V G+VL
Sbjct: 303 ATYEVVQGGTVL 314
>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
Group] gi|108706491|gb|ABF94286.1| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 556
Score = 61.6 bits (148), Expect = 1e-07
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +3
Query: 12 GHIKRNCPEIKKYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSAC 191
GHI+RNCP +KK +NS+S ++L+V S+E+ +AW+LDSA
Sbjct: 362 GHIRRNCPLLKK------RKGGIASLAARGDNSDSSSHEILTV--SNEKSGEAWMLDSAS 413
Query: 192 SYHMTPNKEWFDTYRAVDSGSV 257
SYH+T EWF +Y++ D G V
Sbjct: 414 SYHVTSKWEWFSSYKSGDFGVV 435
>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 424
Score = 61.6 bits (148), Expect = 1e-07
Identities = 32/82 (39%), Positives = 49/82 (59%)
Frame = +3
Query: 12 GHIKRNCPEIKKYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSAC 191
GHI+RNCP +KK ++S+S ++L+V S+E+ +AW+LDSA
Sbjct: 230 GHIRRNCPLLKK------RKDGIASLAARGDDSDSSSHEILTV--SNEKSGEAWMLDSAS 281
Query: 192 SYHMTPNKEWFDTYRAVDSGSV 257
SYH+T +EWF +Y++ D G V
Sbjct: 282 SYHVTSKREWFSSYKSGDFGVV 303
>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
Length = 344
Score = 61.6 bits (148), Expect = 1e-07
Identities = 33/84 (39%), Positives = 45/84 (53%)
Frame = +3
Query: 9 KGHIKRNCPEIKKYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSA 188
+GH +N P+ K E +ENS + D ++ V +S D WILDS
Sbjct: 187 EGHYVKNXPDRKG--KENKRNYNSGDATFAKENSNTTDVLLVXVTNSD----DEWILDSG 240
Query: 189 CSYHMTPNKEWFDTYRAVDSGSVL 260
CSYHM+PN +WF TY+ +D G VL
Sbjct: 241 CSYHMSPNGDWFSTYQPIDGGKVL 264
>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 425
Score = 60.8 bits (146), Expect = 2e-07
Identities = 32/82 (39%), Positives = 48/82 (58%)
Frame = +3
Query: 12 GHIKRNCPEIKKYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSAC 191
GHI+RNCP +KK ++S+S + L+V S+E+ +AW+LDSA
Sbjct: 231 GHIRRNCPLLKK------RKGGIASLAARGDDSDSSSHETLTV--SNEKSGEAWMLDSAS 282
Query: 192 SYHMTPNKEWFDTYRAVDSGSV 257
SYH+T +EWF +Y++ D G V
Sbjct: 283 SYHVTSKREWFSSYKSGDFGVV 304
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +3
Query: 45 KYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEWF 224
KYV + +V +E S D ++L + Q +D WILD+AC+YHM N++WF
Sbjct: 143 KYVPKGKKEEEGKATVVADEKS---DAELLVAYTGCAQTSDQWILDTACTYHMCLNRDWF 199
Query: 225 DTYRAVDSGSVL 260
TY AV G+VL
Sbjct: 200 GTYEAVQGGTVL 211
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 60.5 bits (145), Expect = 2e-07
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +3
Query: 45 KYVAEXXXXXXXXXXIVEEENSESGDGDMLSVMSSSEQLTDAWILDSACSYHMTPNKEWF 224
KYV + +V +E S D ++L + Q +D WIL++AC YHM PN++WF
Sbjct: 468 KYVPKGKKEEEGKAAVVTDEKS---DAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWF 524
Query: 225 DTYRAVDSGSVL 260
TY AV G+VL
Sbjct: 525 ATYEAVQVGTVL 536