BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00051077
         (306 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...    59   5e-07
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]      59   5e-07
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...    58   1e-06
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc...    57   3e-06
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]          57   3e-06

>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1248

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
 Frame = +3

Query: 3   DFVSRKTSGSAFDLEEVQDA--NNSTDASMEIELXXXXXXXXXXXXXXXXXXXXXXXIPL 176
           +F+SRK SGS   L+E+Q+   N ST    ++E                           
Sbjct: 660 EFISRKDSGSMVRLKEIQETPENASTSTQPQVEQDVVQQVEQVVVEPVVEAPAS------ 713

Query: 177 RRSDRVRRQPERYSFLLSDHDDIVLIE-DEPTTHQEVVMRPDSE 305
           RRS+R+RR P RY+ L S   DI+L++ DEPTT++E ++ PD+E
Sbjct: 714 RRSERIRRTPARYALLTSGQRDILLLDNDEPTTYEEAMVGPDTE 757


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
 Frame = +3

Query: 3   DFVSRKTSGSAFDLEEVQDA--NNSTDASMEIELXXXXXXXXXXXXXXXXXXXXXXXIPL 176
           +F+SRK SGS   L+E+Q+   N ST    ++E                           
Sbjct: 573 EFISRKDSGSMVRLKEIQETPENASTSTQPQVEQDVVQQVEQVVVEPVVEAPAS------ 626

Query: 177 RRSDRVRRQPERYSFLLSDHDDIVLIE-DEPTTHQEVVMRPDSE 305
           RRS+R+RR P RY+ L S   DI+L++ DEPTT++E ++ PD+E
Sbjct: 627 RRSERIRRTPARYALLTSGQRDILLLDNDEPTTYEEAMVGPDTE 670


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
 Frame = +3

Query: 3    DFVSRKTSGSAFDLEEVQDANNSTDASMEIELXXXXXXXXXXXXXXXXXXXXXXXIPLRR 182
            +F+SRK SGS   LEE+Q+   +   S + +                           RR
Sbjct: 1196 EFISRKDSGSIVRLEEIQETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEAPAS---RR 1252

Query: 183  SDRVRRQPERYSFLLSDHDDIVLIE-DEPTTHQEVVMRPDSE 305
            S+R+RR P RY+ L     DI+L++ DEPTT++E ++ PDSE
Sbjct: 1253 SERIRRTPARYALLTIGQRDILLLDNDEPTTYEEAMVGPDSE 1294


>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 810

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
 Frame = +3

Query: 3   DFVSRKTSGSAFDLEEVQDANNSTDASMEIELXXXXXXXXXXXXXXXXXXXXXXXIPLRR 182
           +F+SRK SGS   LEE+Q+   +   S + +                        +  RR
Sbjct: 416 EFISRKDSGSMVRLEEIQETPENASTSTQPQ---QAEQDVVQQVEQVVVEPVVEALASRR 472

Query: 183 SDRVRRQPERYSFLLSDHDDIVLIE-DEPTTHQEVVMRPDSE 305
           S R+RR P RY+ L +   DI+L++ DEPT ++E ++ PDSE
Sbjct: 473 SKRIRRTPARYALLTTGQRDILLLDNDEPTIYEEAMVGPDSE 514


>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]
          Length = 746

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
 Frame = +3

Query: 3   DFVSRKTSGSAFDLEEVQDANNSTDASMEIELXXXXXXXXXXXXXXXXXXXXXXXIPLRR 182
           +F+SRK SGS   LEE+Q+   +   S + +                        +  +R
Sbjct: 350 EFISRKDSGSMVGLEEIQETPENVSRSTQPQ---QAEQDVAQQVEQVVVEPVVEALASQR 406

Query: 183 SDRVRRQPERYSFLLSDHDDIVLIE-DEPTTHQEVVMRPDSE 305
            +R+RR P RY+ L +   DI+L++ DEPTT++E ++ PDSE
Sbjct: 407 FERIRRTPARYALLTTGQHDILLLDNDEPTTYEETMVGPDSE 448