BLASTX nr result
ID: Zingiber23_contig00049578
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00049578
(319 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_007475695.1| RNA polymerase beta [Zingiber spectabile] gi... 191 7e-47
ref|YP_008854585.1| RNA polymerase beta [Curcuma roscoeana] gi|5... 191 1e-46
gb|ABU85440.1| RNA polymerase beta subunit [Musa acuminata] 188 6e-46
ref|YP_004769621.1| RNA polymerase beta (chloroplast) [Spirodela... 188 7e-46
emb|CCW72366.1| rpoC1 (chloroplast) [Musa acuminata subsp. malac... 186 2e-45
gb|AEK48483.1| RNA polymerase beta' subunit (chloroplast) [Coloc... 186 4e-45
ref|YP_005097865.1| RNA polymerase beta' subunit (chloroplast) [... 186 4e-45
ref|YP_004769938.1| RNA polymerase beta (chloroplast) [Wolffia a... 186 4e-45
ref|YP_004769803.1| RNA polymerase beta (chloroplast) [Wolffiell... 186 4e-45
ref|YP_001595499.1| RNA polymerase beta' subunit-1 [Lemna minor]... 186 4e-45
ref|YP_007475866.1| RNA polymerase beta [Calamus caryotoides] gi... 185 5e-45
ref|YP_007475610.1| RNA polymerase beta [Heliconia collinsiana] ... 185 5e-45
gb|AGE93361.1| RNA polymerase beta [Alpinia zerumbet] 185 6e-45
ref|YP_008854416.1| RNA polymerase beta [Musa textilis] gi|55763... 184 8e-45
gb|AEX94492.1| RNA polymerase beta (chloroplast) [Cordyline aust... 184 8e-45
ref|YP_008081799.1| DNA-directed RNA polymerase beta' chain (chl... 184 1e-44
gb|AEX94500.1| RNA polymerase beta (chloroplast) [Sansevieria tr... 184 1e-44
ref|YP_006665771.1| RNA polymerase beta (chloroplast) [Elodea ca... 183 2e-44
gb|AEX94493.1| RNA polymerase beta (chloroplast) [Trichopetalum ... 183 2e-44
gb|AHA12746.1| RNA polymerase beta [Canna indica] 182 3e-44
>ref|YP_007475695.1| RNA polymerase beta [Zingiber spectabile]
gi|449326175|gb|AGE92760.1| RNA polymerase beta
[Zingiber spectabile]
Length = 684
Score = 191 bits (486), Expect = 7e-47
Identities = 95/98 (96%), Positives = 95/98 (96%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRGLFEYEIQS KYSIPLFFTTQVFETFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSRKYSIPLFFTTQVFETFRNREISTGAGAIRE 201
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QL DSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR
Sbjct: 202 QLVDSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 239
>ref|YP_008854585.1| RNA polymerase beta [Curcuma roscoeana] gi|557637492|gb|AHA13087.1|
RNA polymerase beta [Curcuma roscoeana]
Length = 684
Score = 191 bits (484), Expect = 1e-46
Identities = 95/98 (96%), Positives = 95/98 (96%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRGLFEYEIQS KYSIPLFFTTQVFETFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSRKYSIPLFFTTQVFETFRNREISTGAGAIRE 201
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII SNSLVEWKELGEEGSTGNEWEDRKIRR
Sbjct: 202 QLADSDLRIITSNSLVEWKELGEEGSTGNEWEDRKIRR 239
>gb|ABU85440.1| RNA polymerase beta subunit [Musa acuminata]
Length = 695
Score = 188 bits (478), Expect = 6e-46
Identities = 94/98 (95%), Positives = 94/98 (95%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
YLDFSFARPIAKKPTFLRLRGLFEYEIQS KYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 154 YLDFSFARPIAKKPTFLRLRGLFEYEIQSRKYSIPLFFTTQGFETFRNREISTGAGAIRE 213
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII NSLVEWKELGEEGSTGNEWEDRKIRR
Sbjct: 214 QLADSDLRIITGNSLVEWKELGEEGSTGNEWEDRKIRR 251
>ref|YP_004769621.1| RNA polymerase beta (chloroplast) [Spirodela polyrhiza]
gi|341834062|gb|AEK94333.1| RNA polymerase beta
[Spirodela polyrhiza]
Length = 690
Score = 188 bits (477), Expect = 7e-46
Identities = 91/98 (92%), Positives = 93/98 (94%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 208
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII NSL+EWKELG+EGSTGNEWEDRKIRR
Sbjct: 209 QLADSDLRIITDNSLIEWKELGDEGSTGNEWEDRKIRR 246
>emb|CCW72366.1| rpoC1 (chloroplast) [Musa acuminata subsp. malaccensis]
Length = 686
Score = 186 bits (473), Expect = 2e-45
Identities = 93/98 (94%), Positives = 93/98 (94%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRGLFEYEIQS KYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSRKYSIPLFFTTQGFETFRNREISTGAGAIRE 201
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII NSLVEWKELGEEGSTGNEWEDRKIRR
Sbjct: 202 QLADSDLRIITGNSLVEWKELGEEGSTGNEWEDRKIRR 239
>gb|AEK48483.1| RNA polymerase beta' subunit (chloroplast) [Colocasia esculenta]
Length = 690
Score = 186 bits (471), Expect = 4e-45
Identities = 90/98 (91%), Positives = 92/98 (93%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFT Q FETFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTIQGFETFRNREISTGAGAIRE 208
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII NSL+EWKELG+EGSTGNEWEDRKIRR
Sbjct: 209 QLADSDLRIITDNSLIEWKELGDEGSTGNEWEDRKIRR 246
>ref|YP_005097865.1| RNA polymerase beta' subunit (chloroplast) [Colocasia esculenta]
gi|340536630|gb|AEK48397.1| RNA polymerase beta' subunit
(chloroplast) [Colocasia esculenta]
Length = 690
Score = 186 bits (471), Expect = 4e-45
Identities = 90/98 (91%), Positives = 92/98 (93%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFT Q FETFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTIQGFETFRNREISTGAGAIRE 208
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII NSL+EWKELG+EGSTGNEWEDRKIRR
Sbjct: 209 QLADSDLRIITDNSLIEWKELGDEGSTGNEWEDRKIRR 246
>ref|YP_004769938.1| RNA polymerase beta (chloroplast) [Wolffia australiana]
gi|341834230|gb|AEK94499.1| RNA polymerase beta [Wolffia
australiana]
Length = 690
Score = 186 bits (471), Expect = 4e-45
Identities = 90/98 (91%), Positives = 92/98 (93%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 208
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLAD DLRII NSL+EWKELG+EGSTGNEWEDRKIRR
Sbjct: 209 QLADLDLRIITDNSLIEWKELGDEGSTGNEWEDRKIRR 246
>ref|YP_004769803.1| RNA polymerase beta (chloroplast) [Wolffiella lingulata]
gi|341834146|gb|AEK94416.1| RNA polymerase beta
[Wolffiella lingulata]
Length = 690
Score = 186 bits (471), Expect = 4e-45
Identities = 90/98 (91%), Positives = 92/98 (93%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 208
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLAD DLRII NSL+EWKELG+EGSTGNEWEDRKIRR
Sbjct: 209 QLADLDLRIITDNSLIEWKELGDEGSTGNEWEDRKIRR 246
>ref|YP_001595499.1| RNA polymerase beta' subunit-1 [Lemna minor]
gi|212288293|sp|A9L987.1|RPOC1_LEMMI RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|88696761|gb|ABD48486.1| RNA polymerase beta'
subunit-1 [Lemna minor]
Length = 690
Score = 186 bits (471), Expect = 4e-45
Identities = 90/98 (91%), Positives = 92/98 (93%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 208
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLAD DLRII NSL+EWKELG+EGSTGNEWEDRKIRR
Sbjct: 209 QLADLDLRIITDNSLIEWKELGDEGSTGNEWEDRKIRR 246
>ref|YP_007475866.1| RNA polymerase beta [Calamus caryotoides]
gi|449326348|gb|AGE92931.1| RNA polymerase beta [Calamus
caryotoides]
Length = 682
Score = 185 bits (470), Expect = 5e-45
Identities = 90/98 (91%), Positives = 93/98 (94%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPI+KKPTFLRLRG FEYEIQSWKYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPISKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 201
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QL+DSDLRII NSLVEWKELG+EGSTGNEWEDRKIRR
Sbjct: 202 QLSDSDLRIIIDNSLVEWKELGDEGSTGNEWEDRKIRR 239
>ref|YP_007475610.1| RNA polymerase beta [Heliconia collinsiana]
gi|449326089|gb|AGE92675.1| RNA polymerase beta
[Heliconia collinsiana]
Length = 684
Score = 185 bits (470), Expect = 5e-45
Identities = 92/98 (93%), Positives = 93/98 (94%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRGLFEYEIQS KYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSRKYSIPLFFTTQGFETFRNREISTGAGAIRE 201
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII NSLVEWKELG+EGSTGNEWEDRKIRR
Sbjct: 202 QLADSDLRIIMGNSLVEWKELGQEGSTGNEWEDRKIRR 239
>gb|AGE93361.1| RNA polymerase beta [Alpinia zerumbet]
Length = 684
Score = 185 bits (469), Expect = 6e-45
Identities = 92/98 (93%), Positives = 93/98 (94%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DF FARPIAKKPTFLRLRGLFEYEIQS KYSIPLFFTT VFETFRNREISTGAGAIRE
Sbjct: 142 YCDFCFARPIAKKPTFLRLRGLFEYEIQSRKYSIPLFFTTPVFETFRNREISTGAGAIRE 201
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII SNSLVEWKELGE+GSTGNEWEDRKIRR
Sbjct: 202 QLADSDLRIITSNSLVEWKELGEKGSTGNEWEDRKIRR 239
>ref|YP_008854416.1| RNA polymerase beta [Musa textilis] gi|557636903|gb|AHA12505.1| RNA
polymerase beta [Musa textilis]
Length = 686
Score = 184 bits (468), Expect = 8e-45
Identities = 92/98 (93%), Positives = 92/98 (93%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARPIAKKPTFLRLRGLFEYEIQS KYSIPLFFTTQ FE FRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSRKYSIPLFFTTQGFEAFRNREISTGAGAIRE 201
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII NSLVEWKELGEEGSTGNEWEDRKIRR
Sbjct: 202 QLADSDLRIITGNSLVEWKELGEEGSTGNEWEDRKIRR 239
>gb|AEX94492.1| RNA polymerase beta (chloroplast) [Cordyline australis]
Length = 685
Score = 184 bits (468), Expect = 8e-45
Identities = 91/98 (92%), Positives = 92/98 (93%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 145 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLAD DLRII NSLVEWKELG+E S GNEWEDRKIRR
Sbjct: 205 QLADLDLRIIIENSLVEWKELGDEESAGNEWEDRKIRR 242
>ref|YP_008081799.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Cymbidium
tracyanum] gi|482662407|gb|AGK25631.1| DNA-directed RNA
polymerase beta' chain (chloroplast) [Cymbidium
tracyanum]
Length = 681
Score = 184 bits (466), Expect = 1e-44
Identities = 90/98 (91%), Positives = 92/98 (93%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
YLDFSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 146 YLDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 205
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII NSLVEWKELG+E S GNEWED+KIRR
Sbjct: 206 QLADSDLRIITENSLVEWKELGDEESAGNEWEDQKIRR 243
>gb|AEX94500.1| RNA polymerase beta (chloroplast) [Sansevieria trifasciata]
Length = 688
Score = 184 bits (466), Expect = 1e-44
Identities = 91/98 (92%), Positives = 92/98 (93%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
YL+FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 145 YLNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLAD DLRII NSLVEWKELGEE S GNEWEDRKIRR
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGEEESAGNEWEDRKIRR 242
>ref|YP_006665771.1| RNA polymerase beta (chloroplast) [Elodea canadensis]
gi|374094587|gb|AEY84643.1| RNA polymerase beta
(chloroplast) [Elodea canadensis]
Length = 688
Score = 183 bits (465), Expect = 2e-44
Identities = 91/100 (91%), Positives = 92/100 (92%)
Frame = -1
Query: 301 GTYLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAI 122
GTY DFSFARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQ FETFRNREISTGA AI
Sbjct: 146 GTYPDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAEAI 205
Query: 121 REQLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
REQLAD DLRII NSLVEWKELG+E STGNEWEDRKIRR
Sbjct: 206 REQLADLDLRIIIDNSLVEWKELGDEESTGNEWEDRKIRR 245
>gb|AEX94493.1| RNA polymerase beta (chloroplast) [Trichopetalum plumosum]
Length = 689
Score = 183 bits (464), Expect = 2e-44
Identities = 90/98 (91%), Positives = 91/98 (92%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
YLDFSFARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 147 YLDFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 206
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLAD DLRII NSLVEWKELG+E S GNEWEDRKIRR
Sbjct: 207 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRR 244
>gb|AHA12746.1| RNA polymerase beta [Canna indica]
Length = 684
Score = 182 bits (463), Expect = 3e-44
Identities = 91/98 (92%), Positives = 92/98 (93%)
Frame = -1
Query: 295 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQVFETFRNREISTGAGAIRE 116
Y DFSFARP+AKKPTFLRLRGLFEYEIQS KYSIPLFFTTQ FETFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPVAKKPTFLRLRGLFEYEIQSRKYSIPLFFTTQGFETFRNREISTGAGAIRE 201
Query: 115 QLADSDLRIIRSNSLVEWKELGEEGSTGNEWEDRKIRR 2
QLADSDLRII NSLVEWKELGEEGSTGNEWED KIRR
Sbjct: 202 QLADSDLRIIIGNSLVEWKELGEEGSTGNEWEDGKIRR 239