BLASTX nr result
ID: Zingiber23_contig00046511
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00046511
(264 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004297875.1| PREDICTED: DNA repair protein XRCC3 homolog ... 107 1e-21
gb|EXC23982.1| DNA repair protein XRCC3-like protein [Morus nota... 105 8e-21
ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog ... 104 1e-20
ref|XP_002531657.1| X-ray repair cross complementing protein 3, ... 104 1e-20
ref|XP_006845632.1| hypothetical protein AMTR_s00019p00219950 [A... 103 2e-20
gb|EOY31825.1| X-ray repair cross complementing 3 (XRCC3) isofor... 102 4e-20
emb|CBI17834.3| unnamed protein product [Vitis vinifera] 101 9e-20
ref|XP_002268968.1| PREDICTED: DNA repair protein XRCC3 homolog ... 101 9e-20
emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera] 101 9e-20
ref|XP_004498371.1| PREDICTED: DNA repair protein XRCC3 homolog ... 100 2e-19
ref|XP_006279666.1| hypothetical protein CARUB_v10026831mg, part... 100 3e-19
ref|XP_002324475.1| hypothetical protein POPTR_0018s10090g [Popu... 99 8e-19
ref|XP_006474178.1| PREDICTED: DNA repair protein XRCC3 homolog ... 98 1e-18
ref|XP_006453378.1| hypothetical protein CICLE_v10008928mg [Citr... 98 1e-18
gb|AFW71835.1| hypothetical protein ZEAMMB73_748424 [Zea mays] 96 4e-18
ref|XP_004952756.1| PREDICTED: DNA repair protein XRCC3 homolog ... 94 1e-17
ref|XP_002454016.1| hypothetical protein SORBIDRAFT_04g023090 [S... 94 2e-17
ref|XP_006401203.1| hypothetical protein EUTSA_v10015458mg [Eutr... 93 4e-17
ref|XP_006648750.1| PREDICTED: DNA repair protein XRCC3 homolog ... 92 6e-17
ref|XP_003572626.1| PREDICTED: DNA repair protein XRCC3 homolog ... 92 6e-17
>ref|XP_004297875.1| PREDICTED: DNA repair protein XRCC3 homolog [Fragaria vesca subsp.
vesca]
Length = 284
Score = 107 bits (268), Expect = 1e-21
Identities = 56/87 (64%), Positives = 66/87 (75%), Gaps = 3/87 (3%)
Frame = +2
Query: 5 DGPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIV--ENNASSR-TTRR 175
+G +RVGN L SSGR+VCPALG++W+NCVN+RLFLSR + IV EN SR T RR
Sbjct: 197 EGINGVRVGNLRSLYSSGRRVCPALGLAWSNCVNSRLFLSRNEEIVGRENGEMSRHTKRR 256
Query: 176 MQVVFAPHLPEASCEFVIVRDGVFGVD 256
+ VVFAPHLP +SCEFVI GVFGVD
Sbjct: 257 LDVVFAPHLPPSSCEFVITEYGVFGVD 283
>gb|EXC23982.1| DNA repair protein XRCC3-like protein [Morus notabilis]
Length = 299
Score = 105 bits (261), Expect = 8e-21
Identities = 54/94 (57%), Positives = 68/94 (72%), Gaps = 11/94 (11%)
Frame = +2
Query: 8 GPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIV-ENNASS-------- 160
G LR+GN YL SS R+VCPALG++WANCVN+RLFLSR + ++ E N S+
Sbjct: 205 GMNGLRIGNLKYLYSSERRVCPALGLAWANCVNSRLFLSRNEEVIREENGSANAGNGDTL 264
Query: 161 --RTTRRMQVVFAPHLPEASCEFVIVRDGVFGVD 256
+T RR+ V+FAPHLPE+S EFVI R+GVFGVD
Sbjct: 265 RRQTRRRIHVLFAPHLPESSTEFVIRREGVFGVD 298
>ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus]
gi|449506730|ref|XP_004162832.1| PREDICTED: DNA repair
protein XRCC3 homolog [Cucumis sativus]
Length = 294
Score = 104 bits (260), Expect = 1e-20
Identities = 53/94 (56%), Positives = 67/94 (71%), Gaps = 10/94 (10%)
Frame = +2
Query: 5 DGPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIVEN-----NASS--- 160
DG LR+GN +LCSS R+VCPALG++WANCVN+RLFLSR + +V N S
Sbjct: 199 DGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRNEEVVGEGEGMMNGSELVQ 258
Query: 161 --RTTRRMQVVFAPHLPEASCEFVIVRDGVFGVD 256
RT R + VVFAPHLP++SCE+VI R+GV GV+
Sbjct: 259 RRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVE 292
>ref|XP_002531657.1| X-ray repair cross complementing protein 3, xrcc3, putative
[Ricinus communis] gi|223528715|gb|EEF30727.1| X-ray
repair cross complementing protein 3, xrcc3, putative
[Ricinus communis]
Length = 301
Score = 104 bits (260), Expect = 1e-20
Identities = 52/89 (58%), Positives = 66/89 (74%), Gaps = 5/89 (5%)
Frame = +2
Query: 5 DGPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIVENNAS-----SRTT 169
DG R+G+ L SSGR+VCPALG++WANCVN+RLFLSR + + + A S+T
Sbjct: 212 DGLNGARIGDLGSLYSSGRRVCPALGLAWANCVNSRLFLSRDENGMVDGAESGSFCSQTR 271
Query: 170 RRMQVVFAPHLPEASCEFVIVRDGVFGVD 256
RR+ VVFAPHLP +SCEFVI R+GVFG+D
Sbjct: 272 RRLHVVFAPHLPYSSCEFVIRREGVFGID 300
>ref|XP_006845632.1| hypothetical protein AMTR_s00019p00219950 [Amborella trichopoda]
gi|548848204|gb|ERN07307.1| hypothetical protein
AMTR_s00019p00219950 [Amborella trichopoda]
Length = 315
Score = 103 bits (258), Expect = 2e-20
Identities = 55/105 (52%), Positives = 68/105 (64%), Gaps = 22/105 (20%)
Frame = +2
Query: 5 DGPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIVENNA---------- 154
+G ++VGNY+ L SSGR+VCPALG+SWANCVN+R+FLSR + V +N
Sbjct: 209 EGLNEVQVGNYSCLFSSGRKVCPALGLSWANCVNSRVFLSRDEEKVADNKMWGSNSQALS 268
Query: 155 ------------SSRTTRRMQVVFAPHLPEASCEFVIVRDGVFGV 253
+RT R+MQVVFAPHLP+ SCEF I RDGVFGV
Sbjct: 269 ENGGFEDGYGDFRTRTRRKMQVVFAPHLPKFSCEFEIRRDGVFGV 313
>gb|EOY31825.1| X-ray repair cross complementing 3 (XRCC3) isoform 1 [Theobroma
cacao] gi|508784570|gb|EOY31826.1| X-ray repair cross
complementing 3 (XRCC3) isoform 1 [Theobroma cacao]
gi|508784571|gb|EOY31827.1| X-ray repair cross
complementing 3 (XRCC3) isoform 1 [Theobroma cacao]
gi|508784572|gb|EOY31828.1| X-ray repair cross
complementing 3 (XRCC3) isoform 1 [Theobroma cacao]
gi|508784573|gb|EOY31829.1| X-ray repair cross
complementing 3 (XRCC3) isoform 1 [Theobroma cacao]
Length = 299
Score = 102 bits (255), Expect = 4e-20
Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 11/96 (11%)
Frame = +2
Query: 5 DGPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMI--VENN--------- 151
+G LR+GN L +SGR+VCPALG++WANCVN+RLFLSR + + EN
Sbjct: 201 EGINGLRIGNLGCLYTSGRRVCPALGLAWANCVNSRLFLSRHEEVNREENGKLIGESGGF 260
Query: 152 ASSRTTRRMQVVFAPHLPEASCEFVIVRDGVFGVDL 259
+T R++ VVFAPHLPE+SCEFVI R+G+FGV++
Sbjct: 261 VCKQTRRKLYVVFAPHLPESSCEFVITREGLFGVEI 296
>emb|CBI17834.3| unnamed protein product [Vitis vinifera]
Length = 260
Score = 101 bits (252), Expect = 9e-20
Identities = 55/94 (58%), Positives = 65/94 (69%), Gaps = 11/94 (11%)
Frame = +2
Query: 8 GPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIV----------ENNAS 157
G LRVGN L SSGR+VC ALG+SWANCVN+RLFLSR + IV +
Sbjct: 166 GLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSRNEEIVGEVTGLGGVGAGDTV 225
Query: 158 SRTTRR-MQVVFAPHLPEASCEFVIVRDGVFGVD 256
SR TRR + V+FAPHLPE+SCEFVI R+GV GV+
Sbjct: 226 SRLTRRHLHVIFAPHLPESSCEFVISREGVLGVE 259
>ref|XP_002268968.1| PREDICTED: DNA repair protein XRCC3 homolog [Vitis vinifera]
Length = 300
Score = 101 bits (252), Expect = 9e-20
Identities = 55/94 (58%), Positives = 65/94 (69%), Gaps = 11/94 (11%)
Frame = +2
Query: 8 GPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIV----------ENNAS 157
G LRVGN L SSGR+VC ALG+SWANCVN+RLFLSR + IV +
Sbjct: 206 GLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSRNEEIVGEVTGLGGVGAGDTV 265
Query: 158 SRTTRR-MQVVFAPHLPEASCEFVIVRDGVFGVD 256
SR TRR + V+FAPHLPE+SCEFVI R+GV GV+
Sbjct: 266 SRLTRRHLHVIFAPHLPESSCEFVISREGVLGVE 299
>emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]
Length = 2077
Score = 101 bits (252), Expect = 9e-20
Identities = 53/94 (56%), Positives = 63/94 (67%), Gaps = 11/94 (11%)
Frame = +2
Query: 8 GPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIVE-----------NNA 154
G LRVGN L SSGR+VC ALG+SWANCVN+RLFLSR + IV +
Sbjct: 1983 GLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSRNEEIVXEVTGLGGVGAGDTV 2042
Query: 155 SSRTTRRMQVVFAPHLPEASCEFVIVRDGVFGVD 256
S T R + V+FAPHLPE+SCEFVI R+GV GV+
Sbjct: 2043 SRLTRRHLHVIFAPHLPESSCEFVISREGVLGVE 2076
>ref|XP_004498371.1| PREDICTED: DNA repair protein XRCC3 homolog [Cicer arietinum]
Length = 296
Score = 100 bits (250), Expect = 2e-19
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +2
Query: 20 LRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIVENNASSRTTRRMQVVFAPH 199
+R+GN++ L SSGR+VCPALG+SWANCVN+R FLS D E RR+ VVFAPH
Sbjct: 212 MRIGNFSELYSSGRRVCPALGLSWANCVNSRFFLSMDDEYEEGGGRVTKMRRLSVVFAPH 271
Query: 200 LPEASCEFVIVRDGVFGVDL 259
LP+ S FVI +GVFGV++
Sbjct: 272 LPQCSSRFVITTEGVFGVEM 291
>ref|XP_006279666.1| hypothetical protein CARUB_v10026831mg, partial [Capsella rubella]
gi|482548370|gb|EOA12564.1| hypothetical protein
CARUB_v10026831mg, partial [Capsella rubella]
Length = 308
Score = 99.8 bits (247), Expect = 3e-19
Identities = 47/94 (50%), Positives = 63/94 (67%), Gaps = 11/94 (11%)
Frame = +2
Query: 5 DGPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIV-----------ENN 151
DG LR+GN YLCSSGR+V PALG++WANCVN+R F+SR D + ++
Sbjct: 213 DGLSGLRIGNLRYLCSSGRRVVPALGLAWANCVNSRFFISRGDDTICKERSENDESGSSS 272
Query: 152 ASSRTTRRMQVVFAPHLPEASCEFVIVRDGVFGV 253
S R RR+ +VF+P+LP SCEF+I R+G+ GV
Sbjct: 273 VSRRAQRRLDIVFSPYLPATSCEFMITREGICGV 306
>ref|XP_002324475.1| hypothetical protein POPTR_0018s10090g [Populus trichocarpa]
gi|222865909|gb|EEF03040.1| hypothetical protein
POPTR_0018s10090g [Populus trichocarpa]
Length = 290
Score = 98.6 bits (244), Expect = 8e-19
Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 7/91 (7%)
Frame = +2
Query: 5 DGPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDM---IVENNASS----R 163
+G +R+GN + + SSGR+VCPALG+SWANCVN+RLFLS+ + +V S
Sbjct: 199 EGLNEVRIGNLSGMYSSGRRVCPALGLSWANCVNSRLFLSKDEYESGLVGGGESGFLSRE 258
Query: 164 TTRRMQVVFAPHLPEASCEFVIVRDGVFGVD 256
T RR+ VVFAPHLP+ SCEFVI R+GV GV+
Sbjct: 259 TRRRLHVVFAPHLPDLSCEFVIRREGVVGVN 289
>ref|XP_006474178.1| PREDICTED: DNA repair protein XRCC3 homolog [Citrus sinensis]
Length = 302
Score = 97.8 bits (242), Expect = 1e-18
Identities = 52/100 (52%), Positives = 62/100 (62%), Gaps = 16/100 (16%)
Frame = +2
Query: 5 DGPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSR-KDMIVENN---------- 151
+G LRVGN L SSGR +CPALGI+WANCVN+RLFLSR +D +V N
Sbjct: 202 EGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGS 261
Query: 152 -----ASSRTTRRMQVVFAPHLPEASCEFVIVRDGVFGVD 256
RT R + VVFAPHL + SCEF I R+GVFG +
Sbjct: 262 GSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGFE 301
>ref|XP_006453378.1| hypothetical protein CICLE_v10008928mg [Citrus clementina]
gi|557556604|gb|ESR66618.1| hypothetical protein
CICLE_v10008928mg [Citrus clementina]
Length = 321
Score = 97.8 bits (242), Expect = 1e-18
Identities = 52/100 (52%), Positives = 62/100 (62%), Gaps = 16/100 (16%)
Frame = +2
Query: 5 DGPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSR-KDMIVENN---------- 151
+G LRVGN L SSGR +CPALGI+WANCVN+RLFLSR +D +V N
Sbjct: 221 EGVNGLRVGNLGCLYSSGRPICPALGIAWANCVNSRLFLSRNEDFVVRENQMVNGGVGGS 280
Query: 152 -----ASSRTTRRMQVVFAPHLPEASCEFVIVRDGVFGVD 256
RT R + VVFAPHL + SCEF I R+GVFG +
Sbjct: 281 GSEDFVCRRTRRSLHVVFAPHLADTSCEFEITREGVFGFE 320
>gb|AFW71835.1| hypothetical protein ZEAMMB73_748424 [Zea mays]
Length = 291
Score = 96.3 bits (238), Expect = 4e-18
Identities = 49/70 (70%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Frame = +2
Query: 50 SSGRQVCPALGISWANCVNTRLFLSRKDMIVENNASSRTTRR-MQVVFAPHLPEASCEFV 226
SSGR++ PALGI+WANCVNTRLFL+R+ VE N +S + RR M+V FAPHLPE SCEFV
Sbjct: 222 SSGRRLSPALGIAWANCVNTRLFLTRE---VEGNGTSGSARRWMKVAFAPHLPEQSCEFV 278
Query: 227 IVRDGVFGVD 256
I RDGVFGV+
Sbjct: 279 IRRDGVFGVE 288
>ref|XP_004952756.1| PREDICTED: DNA repair protein XRCC3 homolog [Setaria italica]
Length = 290
Score = 94.4 bits (233), Expect = 1e-17
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = +2
Query: 50 SSGRQVCPALGISWANCVNTRLFLSRKDMIVENNASSRTTRRMQVVFAPHLPEASCEFVI 229
SSGR+V PALGI+WANCVNTRLFL+R+ + AS RRM+V FAPHLPE +CEFVI
Sbjct: 222 SSGRRVSPALGIAWANCVNTRLFLTRE----VDGASGIAMRRMKVAFAPHLPERACEFVI 277
Query: 230 VRDGVFGVD 256
RDGVFGV+
Sbjct: 278 RRDGVFGVE 286
>ref|XP_002454016.1| hypothetical protein SORBIDRAFT_04g023090 [Sorghum bicolor]
gi|241933847|gb|EES06992.1| hypothetical protein
SORBIDRAFT_04g023090 [Sorghum bicolor]
Length = 292
Score = 93.6 bits (231), Expect = 2e-17
Identities = 46/69 (66%), Positives = 55/69 (79%)
Frame = +2
Query: 50 SSGRQVCPALGISWANCVNTRLFLSRKDMIVENNASSRTTRRMQVVFAPHLPEASCEFVI 229
SSGR+V PALGI+WANCVN RLFL+R+ + + AS RRM+V FAPHLPE SCEF+I
Sbjct: 222 SSGRRVSPALGIAWANCVNMRLFLTRE--VGGDGASGSARRRMKVAFAPHLPERSCEFMI 279
Query: 230 VRDGVFGVD 256
RDGVFGV+
Sbjct: 280 RRDGVFGVE 288
>ref|XP_006401203.1| hypothetical protein EUTSA_v10015458mg [Eutrema salsugineum]
gi|557102293|gb|ESQ42656.1| hypothetical protein
EUTSA_v10015458mg [Eutrema salsugineum]
Length = 296
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/88 (51%), Positives = 63/88 (71%), Gaps = 8/88 (9%)
Frame = +2
Query: 5 DGPGRLRVGNYAYLCSSGRQVCPALGISWANCVNTRLFLSRKDMIV--ENNASSRTT--- 169
DG LR+GN YL SSGR+V PALG++WANCVN+R F+SR + + EN+ S R++
Sbjct: 204 DGLSGLRIGNLRYLYSSGRRVVPALGLAWANCVNSRFFISRSNETICKENDESGRSSVSI 263
Query: 170 ---RRMQVVFAPHLPEASCEFVIVRDGV 244
RR+++VF+PHLP +SCEF I +G+
Sbjct: 264 RAQRRLEIVFSPHLPGSSCEFKITPEGI 291
>ref|XP_006648750.1| PREDICTED: DNA repair protein XRCC3 homolog [Oryza brachyantha]
Length = 450
Score = 92.4 bits (228), Expect = 6e-17
Identities = 46/69 (66%), Positives = 54/69 (78%)
Frame = +2
Query: 50 SSGRQVCPALGISWANCVNTRLFLSRKDMIVENNASSRTTRRMQVVFAPHLPEASCEFVI 229
SSGR+V PALG++WANCVNTRLFL+R + S TRRM+V FAPHLPE +CEFVI
Sbjct: 222 SSGRRVSPALGLAWANCVNTRLFLTR------DADGSVNTRRMKVAFAPHLPERACEFVI 275
Query: 230 VRDGVFGVD 256
RDGVFGV+
Sbjct: 276 RRDGVFGVE 284
>ref|XP_003572626.1| PREDICTED: DNA repair protein XRCC3 homolog [Brachypodium
distachyon]
Length = 288
Score = 92.4 bits (228), Expect = 6e-17
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = +2
Query: 50 SSGRQVCPALGISWANCVNTRLFLSRKDMIVENNASSRTTRRMQVVFAPHLPEASCEFVI 229
SSGRQV PALG++WANCVNTRLFL+R+ V+ N S R M+VVFAPHLPE +CEFVI
Sbjct: 220 SSGRQVSPALGLAWANCVNTRLFLTRE---VDGNGGS-VKRHMKVVFAPHLPERTCEFVI 275
Query: 230 VRDGVFGVD 256
R GVFGV+
Sbjct: 276 RRTGVFGVE 284