BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00045509
         (297 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...    78   1e-12
emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao s...    68   1e-09
gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]                 66   6e-09
emb|CAA64266.1| unnamed protein product [Dioscorea bacilliform v...    63   4e-08
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]                63   4e-08
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|3478...    62   8e-08
emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]                62   1e-07
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]                61   2e-07
emb|CAA64269.1| unnamed protein product [Dioscorea bacilliform v...    60   4e-07
ref|YP_001293182.1| hypothetical protein LBBV_gp3 [Lucky bamboo ...    59   7e-07
ref|YP_610965.1| hypothetical protein DMV_gp3 [Dracaena mottle v...    59   7e-07
ref|YP_224289.1| ORF III polyprotein [Banana streak Mysore virus...    57   3e-06

>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
           gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
           bacilliform virus GD1]
          Length = 1892

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 42/84 (50%), Positives = 53/84 (63%)
 Frame = -3

Query: 253 VKTGTGQA*EVMERQQTIQTAPSTTAPLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTGR 74
           + T T Q    + R  T +       PLFEDQIR+YR +QR+ Y T+RA +RL RR+TGR
Sbjct: 1   MSTTTTQTVPPVTRNATRRQQGERETPLFEDQIRDYRNSQRRAYTTQRAVRRLRRRITGR 60

Query: 73  TSPAYTLEQQLDPQAQLQTSMTER 2
                TLEQ++DPQA LQ SM ER
Sbjct: 61  QPYQETLEQEVDPQADLQMSMQER 84


>emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao swollen shoot virus]
          Length = 1868

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 8/81 (9%)
 Frame = -3

Query: 220 MERQQTIQTAPSTTA--------PLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTGRTSP 65
           M R +T  + PS T+        PL+EDQIR+YR  QR+++N RR A+RL R +TG +  
Sbjct: 1   MSRARTQHSVPSVTSTSEQQREGPLYEDQIRDYRRGQRRIFNLRRQARRLRRSVTG-SRY 59

Query: 64  AYTLEQQLDPQAQLQTSMTER 2
             TLEQ++DPQ  L+ SM ER
Sbjct: 60  QETLEQEIDPQTTLRLSMQER 80


>gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]
          Length = 1872

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
 Frame = -3

Query: 175 PLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTG-RTSPAYTLEQQLDPQAQLQTSMTER 2
           PLFEDQ+R YR NQR+L+N R+ A+R  + LTG R+    TLEQ++DPQ  L+ SM ER
Sbjct: 23  PLFEDQVRNYRRNQRRLFNLRKKARRAQKALTGSRSRHQETLEQEIDPQVTLRLSMQER 81


>emb|CAA64266.1| unnamed protein product [Dioscorea bacilliform virus]
          Length = 551

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 35/73 (47%), Positives = 47/73 (64%)
 Frame = -3

Query: 220 MERQQTIQTAPSTTAPLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTGRTSPAYTLEQQL 41
           MER QT  T+ +TT  +FEDQ+R+YR   R+ YN  +AAQ+L + LT       TLEQQ+
Sbjct: 1   MERPQT-STSVATTPSVFEDQVRDYRLGARRRYNMSQAAQKLVKTLTFGKYHQPTLEQQV 59

Query: 40  DPQAQLQTSMTER 2
           DP+  LQ S  +R
Sbjct: 60  DPEKTLQLSSMQR 72


>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
          Length = 1816

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
 Frame = -3

Query: 211 QQTIQTAPSTTA------PLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTGRTSPAYTLE 50
           Q  + +  STT+      PL+EDQIR+YR +QR+++N RR A+RL R + G +    TLE
Sbjct: 7   QPPVPSVTSTTSEQNREGPLYEDQIRDYRRSQRRIFNLRRRARRLRRSMMG-SRYQETLE 65

Query: 49  QQLDPQAQLQTSMTER 2
           Q++DPQ  L+ SM ER
Sbjct: 66  QEIDPQTTLRLSMQER 81


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|347871|gb|AAA03171.1|
           polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 32/68 (47%), Positives = 45/68 (66%)
 Frame = -3

Query: 205 TIQTAPSTTAPLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTGRTSPAYTLEQQLDPQAQ 26
           T  +  +   PL+EDQIR+YR  QR+++N RR A+RL R + G +    TLEQ++DPQ  
Sbjct: 15  TTTSEQNREGPLYEDQIRDYRRGQRRIFNLRRRARRLRRSMMG-SRYQETLEQEIDPQTT 73

Query: 25  LQTSMTER 2
           L+ SM ER
Sbjct: 74  LRLSMQER 81


>emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 31/58 (53%), Positives = 43/58 (74%)
 Frame = -3

Query: 175 PLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTGRTSPAYTLEQQLDPQAQLQTSMTER 2
           PL+EDQIR+YR +QR+++N RR A+RL R + G +    TLEQ++DPQ  L+ SM ER
Sbjct: 25  PLYEDQIRDYRRSQRRIFNLRRNARRLRRSMMG-SRYQETLEQEIDPQTTLRLSMQER 81


>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
          Length = 1839

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
 Frame = -3

Query: 211 QQTIQTAPSTTA------PLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTGRTSPAYTLE 50
           Q  I +  +TT+      PL+EDQIR+YR  QR+++N +R A+RL R + G +    TLE
Sbjct: 7   QHPIPSVTTTTSERNREGPLYEDQIRDYRRGQRRIFNLQRRARRLRRSMMG-SRYQETLE 65

Query: 49  QQLDPQAQLQTSMTER 2
           Q++DPQ  L+ SM ER
Sbjct: 66  QEIDPQTTLRLSMQER 81


>emb|CAA64269.1| unnamed protein product [Dioscorea bacilliform virus]
          Length = 547

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 33/73 (45%), Positives = 46/73 (63%)
 Frame = -3

Query: 220 MERQQTIQTAPSTTAPLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTGRTSPAYTLEQQL 41
           MER QT  T+ ++T  +FEDQ+R+YR   R+ YN  + AQ+L + LT       TLEQQ+
Sbjct: 1   MERPQT-STSVASTPSVFEDQVRDYRLGARRRYNMSQTAQKLVKTLTFGKYYQPTLEQQV 59

Query: 40  DPQAQLQTSMTER 2
           DP+  LQ S  +R
Sbjct: 60  DPEKTLQLSSMQR 72


>ref|YP_001293182.1| hypothetical protein LBBV_gp3 [Lucky bamboo bacilliform virus]
           gi|148645292|gb|ABR01170.1| hypothetical protein [Lucky
           bamboo bacilliform virus]
          Length = 1913

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 30/64 (46%), Positives = 40/64 (62%)
 Frame = -3

Query: 193 APSTTAPLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTGRTSPAYTLEQQLDPQAQLQTS 14
           A ++T P  EDQIR+YR N R  ++ +R  QR+ R LTGR     TLEQ +DP  QLQ S
Sbjct: 14  ASTSTVPNQEDQIRDYRANARLRHDAQRQLQRVRRTLTGRQGYRRTLEQHIDPNEQLQLS 73

Query: 13  MTER 2
             ++
Sbjct: 74  QKKK 77


>ref|YP_610965.1| hypothetical protein DMV_gp3 [Dracaena mottle virus]
           gi|92430216|gb|ABE77344.1| hypothetical protein
           [Dracaena mottle virus]
          Length = 1916

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 30/64 (46%), Positives = 40/64 (62%)
 Frame = -3

Query: 193 APSTTAPLFEDQIREYRCNQRKLYNTRRAAQRLGRRLTGRTSPAYTLEQQLDPQAQLQTS 14
           A ++T P  EDQIR+YR N R  ++ +R  QR+ R LTGR     TLEQ +DP  QLQ S
Sbjct: 14  ASTSTVPNQEDQIRDYRANARLRHDAQRQLQRVRRTLTGRQGYRRTLEQHIDPNEQLQLS 73

Query: 13  MTER 2
             ++
Sbjct: 74  QKKK 77


>ref|YP_224289.1| ORF III polyprotein [Banana streak Mysore virus]
           gi|58618162|gb|AAW80648.1| ORF III polyprotein [Banana
           streak Mysore virus]
          Length = 1869

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
 Frame = -3

Query: 190 PSTTA----PLFEDQIREYRCNQRKLYNTRRAAQRL---GRRLTGRTSPAYTLEQQLDPQ 32
           PST+     PL EDQIR+YR + R+ Y  +R A+ +   GRRL GR +   TL   +DP+
Sbjct: 17  PSTSGRDGTPLIEDQIRDYRASARRRYEAQRVARNIGNVGRRLIGRQTREDTLALLMDPE 76

Query: 31  AQLQTSMTER 2
            +LQ SM ER
Sbjct: 77  VELQRSMRER 86