BLASTX nr result
ID: Zingiber23_contig00044114
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00044114
(259 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008854585.1| RNA polymerase beta [Curcuma roscoeana] gi|5... 177 2e-42
ref|YP_007475695.1| RNA polymerase beta [Zingiber spectabile] gi... 176 2e-42
gb|AGE93361.1| RNA polymerase beta [Alpinia zerumbet] 174 9e-42
ref|YP_008854502.1| RNA polymerase beta [Ravenala madagascariens... 171 9e-41
ref|YP_007475610.1| RNA polymerase beta [Heliconia collinsiana] ... 171 9e-41
ref|YP_008854416.1| RNA polymerase beta [Musa textilis] gi|55763... 169 5e-40
emb|CCW72366.1| rpoC1 (chloroplast) [Musa acuminata subsp. malac... 169 5e-40
gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia] 166 2e-39
gb|AEX94484.1| RNA polymerase beta (chloroplast) [Doryanthes pal... 166 2e-39
gb|AEX94481.1| RNA polymerase beta (chloroplast) [Asphodeline da... 166 2e-39
ref|YP_003433966.1| RNA polymerase beta [Typha latifolia] gi|281... 166 2e-39
gb|AEX94483.1| RNA polymerase beta (chloroplast) [Kniphofia line... 166 3e-39
gb|ABU85440.1| RNA polymerase beta subunit [Musa acuminata] 166 3e-39
gb|AFX62880.1| RNA polymerase beta' subunit, partial (chloroplas... 166 4e-39
gb|AHA12674.1| RNA polymerase beta [Orchidantha fimbriata] 166 4e-39
ref|YP_007475780.1| RNA polymerase beta [Pseudophoenix vinifera]... 166 4e-39
gb|AHH24324.1| RNA polymerase beta (chloroplast) [Japonolirion o... 165 7e-39
gb|AHA13173.1| RNA polymerase beta [Thaumatococcus daniellii] 165 7e-39
gb|AHA12746.1| RNA polymerase beta [Canna indica] 165 7e-39
gb|AEZ01418.1| RNA polymerase beta (chloroplast) [Japonolirion o... 165 7e-39
>ref|YP_008854585.1| RNA polymerase beta [Curcuma roscoeana] gi|557637492|gb|AHA13087.1|
RNA polymerase beta [Curcuma roscoeana]
Length = 684
Score = 177 bits (448), Expect = 2e-42
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI
Sbjct: 597 QKRISLDSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 656
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRELEEAIQGFCRAYSY
Sbjct: 657 RTTLGHISFYRELEEAIQGFCRAYSY 682
>ref|YP_007475695.1| RNA polymerase beta [Zingiber spectabile]
gi|449326175|gb|AGE92760.1| RNA polymerase beta
[Zingiber spectabile]
Length = 684
Score = 176 bits (447), Expect = 2e-42
Identities = 85/86 (98%), Positives = 85/86 (98%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL SPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI
Sbjct: 597 QKRISLKSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 656
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRELEEAIQGFCRAYSY
Sbjct: 657 RTTLGHISFYRELEEAIQGFCRAYSY 682
>gb|AGE93361.1| RNA polymerase beta [Alpinia zerumbet]
Length = 684
Score = 174 bits (442), Expect = 9e-42
Identities = 84/86 (97%), Positives = 85/86 (98%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRWRRDQRVI SREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI
Sbjct: 597 QKRISLDSPLWLRWRRDQRVISSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 656
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRELEEAIQGFCRAYSY
Sbjct: 657 RTTLGHISFYRELEEAIQGFCRAYSY 682
>ref|YP_008854502.1| RNA polymerase beta [Ravenala madagascariensis]
gi|557636990|gb|AHA12591.1| RNA polymerase beta
[Ravenala madagascariensis]
Length = 690
Score = 171 bits (433), Expect = 9e-41
Identities = 81/86 (94%), Positives = 84/86 (97%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRWR DQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGS+TKEIR IYI
Sbjct: 597 QKRISLDSPLWLRWRLDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSVTKEIRCIYI 656
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+EEAIQGFCRAYSY
Sbjct: 657 RTTLGHISFYREIEEAIQGFCRAYSY 682
>ref|YP_007475610.1| RNA polymerase beta [Heliconia collinsiana]
gi|449326089|gb|AGE92675.1| RNA polymerase beta
[Heliconia collinsiana]
Length = 684
Score = 171 bits (433), Expect = 9e-41
Identities = 81/86 (94%), Positives = 84/86 (97%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRWR DQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGS+TKEIR IYI
Sbjct: 597 QKRISLDSPLWLRWRLDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSVTKEIRCIYI 656
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+EEAIQGFCRAYSY
Sbjct: 657 RTTLGHISFYREIEEAIQGFCRAYSY 682
>ref|YP_008854416.1| RNA polymerase beta [Musa textilis] gi|557636903|gb|AHA12505.1| RNA
polymerase beta [Musa textilis]
Length = 686
Score = 169 bits (427), Expect = 5e-40
Identities = 80/86 (93%), Positives = 83/86 (96%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRWR DQRVIGSREVPIEVQYESLGTYHEIYGHYLI GS+TKEIR IYI
Sbjct: 599 QKRISLDSPLWLRWRLDQRVIGSREVPIEVQYESLGTYHEIYGHYLIEGSVTKEIRCIYI 658
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+EEAIQGFCRAYSY
Sbjct: 659 RTTLGHISFYREIEEAIQGFCRAYSY 684
>emb|CCW72366.1| rpoC1 (chloroplast) [Musa acuminata subsp. malaccensis]
Length = 686
Score = 169 bits (427), Expect = 5e-40
Identities = 80/86 (93%), Positives = 83/86 (96%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRWR DQRVIGSREVPIEVQYESLGTYHEIYGHYLI GS+TKEIR IYI
Sbjct: 599 QKRISLDSPLWLRWRLDQRVIGSREVPIEVQYESLGTYHEIYGHYLIEGSVTKEIRCIYI 658
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+EEAIQGFCRAYSY
Sbjct: 659 RTTLGHISFYREIEEAIQGFCRAYSY 684
>gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia]
Length = 684
Score = 166 bits (421), Expect = 2e-39
Identities = 78/86 (90%), Positives = 83/86 (96%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRW+ DQRVIGSREVPIEVQYESLGTYHEIYGHYL+VGS+ KEIR IYI
Sbjct: 599 QKRISLDSPLWLRWKLDQRVIGSREVPIEVQYESLGTYHEIYGHYLMVGSVKKEIRCIYI 658
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+EEAIQGFCRAYSY
Sbjct: 659 RTTLGHISFYREIEEAIQGFCRAYSY 684
>gb|AEX94484.1| RNA polymerase beta (chloroplast) [Doryanthes palmeri]
Length = 685
Score = 166 bits (421), Expect = 2e-39
Identities = 78/86 (90%), Positives = 83/86 (96%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRI+L+SPLWLRWR DQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGS+ KEIR IYI
Sbjct: 598 QKRINLDSPLWLRWRLDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYI 657
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTT+GHISFYRE+EEAIQGFCRAYSY
Sbjct: 658 RTTVGHISFYREIEEAIQGFCRAYSY 683
>gb|AEX94481.1| RNA polymerase beta (chloroplast) [Asphodeline damascena]
Length = 683
Score = 166 bits (421), Expect = 2e-39
Identities = 77/86 (89%), Positives = 82/86 (95%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRI+LNSP WLRWR DQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGS+ KEIR IYI
Sbjct: 596 QKRINLNSPFWLRWRLDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYI 655
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTT+GH+SFYRE+EEAIQGFCRAYSY
Sbjct: 656 RTTVGHVSFYREIEEAIQGFCRAYSY 681
>ref|YP_003433966.1| RNA polymerase beta [Typha latifolia] gi|281371763|gb|ADA63690.1|
RNA polymerase beta [Typha latifolia]
Length = 686
Score = 166 bits (421), Expect = 2e-39
Identities = 78/86 (90%), Positives = 83/86 (96%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRW+ DQRVIGSREVPIEVQYESLGTYHEIYGHYL+VGS+ KEIR IYI
Sbjct: 599 QKRISLDSPLWLRWKLDQRVIGSREVPIEVQYESLGTYHEIYGHYLMVGSVKKEIRCIYI 658
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+EEAIQGFCRAYSY
Sbjct: 659 RTTLGHISFYREIEEAIQGFCRAYSY 684
>gb|AEX94483.1| RNA polymerase beta (chloroplast) [Kniphofia linearifolia]
Length = 685
Score = 166 bits (420), Expect = 3e-39
Identities = 76/86 (88%), Positives = 82/86 (95%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRI+LNSP WLRWR DQRVIGSREVP+EVQYESLGTYHEIYGHYLIVGS+ KEIR IYI
Sbjct: 598 QKRINLNSPFWLRWRLDQRVIGSREVPVEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYI 657
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTT+GH+SFYRE+EEAIQGFCRAYSY
Sbjct: 658 RTTVGHVSFYREIEEAIQGFCRAYSY 683
>gb|ABU85440.1| RNA polymerase beta subunit [Musa acuminata]
Length = 695
Score = 166 bits (420), Expect = 3e-39
Identities = 79/85 (92%), Positives = 82/85 (96%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRWR DQRVIGSREVPIEVQYESLGTYHEIYGHYLI GS+TKEIR IYI
Sbjct: 611 QKRISLDSPLWLRWRLDQRVIGSREVPIEVQYESLGTYHEIYGHYLIEGSVTKEIRCIYI 670
Query: 79 RTTLGHISFYRELEEAIQGFCRAYS 5
RTTLGHISFYRE+EEAIQGFCRAYS
Sbjct: 671 RTTLGHISFYREIEEAIQGFCRAYS 695
>gb|AFX62880.1| RNA polymerase beta' subunit, partial (chloroplast) [Leptaspis
zeylanica]
Length = 103
Score = 166 bits (419), Expect = 4e-39
Identities = 79/86 (91%), Positives = 82/86 (95%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRWR DQRVIGSREVPIEVQYESLGTYHEI GHYLI GS+TKEIR IYI
Sbjct: 16 QKRISLDSPLWLRWRLDQRVIGSREVPIEVQYESLGTYHEIXGHYLIEGSVTKEIRCIYI 75
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+EEAIQGFCRAYSY
Sbjct: 76 RTTLGHISFYREIEEAIQGFCRAYSY 101
>gb|AHA12674.1| RNA polymerase beta [Orchidantha fimbriata]
Length = 689
Score = 166 bits (419), Expect = 4e-39
Identities = 78/86 (90%), Positives = 83/86 (96%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QK+ISL+SPLWLRWR DQRVIGSREVPIEVQYES GTYHEI+GHYLIVGS+TKEIR IYI
Sbjct: 602 QKQISLDSPLWLRWRLDQRVIGSREVPIEVQYESSGTYHEIFGHYLIVGSVTKEIRCIYI 661
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+EEAIQGFCRAYSY
Sbjct: 662 RTTLGHISFYREIEEAIQGFCRAYSY 687
>ref|YP_007475780.1| RNA polymerase beta [Pseudophoenix vinifera]
gi|449326261|gb|AGE92845.1| RNA polymerase beta
[Pseudophoenix vinifera]
Length = 682
Score = 166 bits (419), Expect = 4e-39
Identities = 79/86 (91%), Positives = 81/86 (94%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISLNSPLWLRWR DQRVIGSREVPIEVQYESLGTYHEIY HYLIVGS+ KEI IYI
Sbjct: 595 QKRISLNSPLWLRWRLDQRVIGSREVPIEVQYESLGTYHEIYEHYLIVGSVKKEIHCIYI 654
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+EEAIQGFCRAYSY
Sbjct: 655 RTTLGHISFYREIEEAIQGFCRAYSY 680
>gb|AHH24324.1| RNA polymerase beta (chloroplast) [Japonolirion osense]
Length = 682
Score = 165 bits (417), Expect = 7e-39
Identities = 77/86 (89%), Positives = 83/86 (96%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
+KRI+L+SPLWLRWR DQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGS+ KEIR IYI
Sbjct: 595 RKRINLDSPLWLRWRLDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYI 654
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTT+GHISFYRE+EEAIQGFCRAYSY
Sbjct: 655 RTTVGHISFYREIEEAIQGFCRAYSY 680
>gb|AHA13173.1| RNA polymerase beta [Thaumatococcus daniellii]
Length = 687
Score = 165 bits (417), Expect = 7e-39
Identities = 78/86 (90%), Positives = 82/86 (95%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRISL+SPLWLRWR DQRVIGSREVP+EVQYESLGTYHEIYGHYLIV S+TKEIR IYI
Sbjct: 599 QKRISLDSPLWLRWRLDQRVIGSREVPVEVQYESLGTYHEIYGHYLIVVSVTKEIRCIYI 658
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+ EAIQGFCRAYSY
Sbjct: 659 RTTLGHISFYREIAEAIQGFCRAYSY 684
>gb|AHA12746.1| RNA polymerase beta [Canna indica]
Length = 684
Score = 165 bits (417), Expect = 7e-39
Identities = 78/86 (90%), Positives = 82/86 (95%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
QKRI+L+SPLWLRWR DQRVIGSREVP+EVQYESLGTYHEIY HYL VGSITKEIR IYI
Sbjct: 597 QKRINLDSPLWLRWRLDQRVIGSREVPVEVQYESLGTYHEIYEHYLTVGSITKEIRCIYI 656
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTTLGHISFYRE+EEAIQGFCRAYSY
Sbjct: 657 RTTLGHISFYREIEEAIQGFCRAYSY 682
>gb|AEZ01418.1| RNA polymerase beta (chloroplast) [Japonolirion osense]
Length = 686
Score = 165 bits (417), Expect = 7e-39
Identities = 77/86 (89%), Positives = 83/86 (96%)
Frame = -1
Query: 259 QKRISLNSPLWLRWRRDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSITKEIRSIYI 80
+KRI+L+SPLWLRWR DQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGS+ KEIR IYI
Sbjct: 599 RKRINLDSPLWLRWRLDQRVIGSREVPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYI 658
Query: 79 RTTLGHISFYRELEEAIQGFCRAYSY 2
RTT+GHISFYRE+EEAIQGFCRAYSY
Sbjct: 659 RTTVGHISFYREIEEAIQGFCRAYSY 684