BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00042499
         (389 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...    59   7e-07
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...    59   9e-07
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...    59   9e-07
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...    59   9e-07
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...    58   1e-06
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...    57   3e-06
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family...    55   7e-06

>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Setaria italica]
          Length = 1397

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 36/68 (52%), Positives = 42/68 (61%), Gaps = 12/68 (17%)
 Frame = -3

Query: 180 MARREEKRRCTEEPCIEDVRCPRRIKRIRFSAFSGEGIRNSA------------DLRTVQ 37
           MA+ EEK RCT+EP IEDV   RRIK IRFS  SG  IR SA            D++ V 
Sbjct: 1   MAKPEEKLRCTKEPFIEDVGA-RRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEHDMKPVP 59

Query: 36  NGLLNLRM 13
           NGLL++RM
Sbjct: 60  NGLLDMRM 67


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Brachypodium distachyon]
          Length = 1392

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 12/68 (17%)
 Frame = -3

Query: 180 MARREEKRRCTEEPCIEDVRCPRRIKRIRFSAFSGEGIRNSA------------DLRTVQ 37
           MAR EEK RCT+EP +EDV   RRIK +RFS FSG+ IR SA            D++ V 
Sbjct: 1   MARPEEKLRCTKEPFVEDVG-TRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVP 59

Query: 36  NGLLNLRM 13
           NGLL+ RM
Sbjct: 60  NGLLDPRM 67


>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 36/68 (52%), Positives = 42/68 (61%), Gaps = 12/68 (17%)
 Frame = -3

Query: 180 MARREEKRRCTEEPCIEDVRCPRRIKRIRFSAFSGEGIRNSA------------DLRTVQ 37
           MAR EEK RCT+EP IEDV   RRIK IRFS FSG  +R SA            +++ V 
Sbjct: 1   MARPEEKLRCTKEPFIEDVGT-RRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVP 59

Query: 36  NGLLNLRM 13
           NGLL+ RM
Sbjct: 60  NGLLDTRM 67


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
           gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
           Japonica Group] gi|38347455|emb|CAD41360.2|
           OSJNBa0076N16.24 [Oryza sativa Japonica Group]
           gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
           Japonica Group] gi|116310339|emb|CAH67354.1|
           OSIGBa0130B08.14 [Oryza sativa Indica Group]
           gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
           Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|218195112|gb|EEC77539.1| hypothetical protein
           OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 36/68 (52%), Positives = 42/68 (61%), Gaps = 12/68 (17%)
 Frame = -3

Query: 180 MARREEKRRCTEEPCIEDVRCPRRIKRIRFSAFSGEGIRNSA------------DLRTVQ 37
           MAR EEK RCT+EP IEDV   RRIK IRFS FSG  +R SA            +++ V 
Sbjct: 1   MARPEEKLRCTKEPFIEDVGT-RRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVP 59

Query: 36  NGLLNLRM 13
           NGLL+ RM
Sbjct: 60  NGLLDTRM 67


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
           brachyantha]
          Length = 1389

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 36/68 (52%), Positives = 41/68 (60%), Gaps = 12/68 (17%)
 Frame = -3

Query: 180 MARREEKRRCTEEPCIEDVRCPRRIKRIRFSAFSGEGIRNSA------------DLRTVQ 37
           MAR EEK RCT+EP IED    RRIK IRFS FSG  +R SA            ++R V 
Sbjct: 1   MARPEEKLRCTKEPFIEDAGT-RRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVP 59

Query: 36  NGLLNLRM 13
           NGLL+ RM
Sbjct: 60  NGLLDTRM 67


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
           gi|241937900|gb|EES11045.1| hypothetical protein
           SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 36/68 (52%), Positives = 41/68 (60%), Gaps = 12/68 (17%)
 Frame = -3

Query: 180 MARREEKRRCTEEPCIEDVRCPRRIKRIRFSAFSGEGIRNSA------------DLRTVQ 37
           MA+ EEK RCT+EP IEDV   RRIK IRFS  SG  IR SA            D++ V 
Sbjct: 1   MAKPEEKLRCTKEPFIEDVG-TRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGHDMKPVP 59

Query: 36  NGLLNLRM 13
           NGLL+ RM
Sbjct: 60  NGLLDPRM 67


>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
          Length = 1030

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 36/68 (52%), Positives = 40/68 (58%), Gaps = 12/68 (17%)
 Frame = -3

Query: 180 MARREEKRRCTEEPCIEDVRCPRRIKRIRFSAFSGEGIRNSA------------DLRTVQ 37
           MA+ EEK RCT+EP IEDV   RRIK IRFS  SG  IR SA            D+  V 
Sbjct: 1   MAKPEEKLRCTKEPFIEDVG-TRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYDRDMTPVP 59

Query: 36  NGLLNLRM 13
           NGLL+ RM
Sbjct: 60  NGLLDPRM 67