BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00042055
         (1223 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza...   509   e-153
dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryz...   508   e-153
gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japo...   508   e-153
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...   502   e-151
ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [S...   497   e-151
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub...   506   e-141
gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza...   506   e-141
ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I sub...   467   e-137
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   476   e-137
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              476   e-137
gb|EMS52925.1| DNA-directed RNA polymerase I subunit rpa1 [Triti...   469   e-137
gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indi...   446   e-134
gb|EMT12934.1| DNA-directed RNA polymerase I subunit RPA1 [Aegil...   458   e-134
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]   465   e-131
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   447   e-130
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...   451   e-130
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...   451   e-130
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca...   451   e-130
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca...   451   e-130
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   440   e-129

>gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
          Length = 1830

 Score =  509 bits (1312), Expect(2) = e-153
 Identities = 248/328 (75%), Positives = 281/328 (85%)
 Frame = +1

Query: 238  FFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDSNNTDILRRWM 417
            FFLK +LV PN+FRP+ +S+  G+MEHPQN LL KVQ+AN+AL+     SN+ ++LRRWM
Sbjct: 329  FFLKNLLVAPNRFRPSISSSL-GIMEHPQNVLLGKVQEANLALQQSNTSSNHMEVLRRWM 387

Query: 418  DLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDPYL 597
            DLQRSVNVLYDS+KGL KSEK +NGIRQLLEKK GILRQKMMGKRVN+ACRSVISPDPYL
Sbjct: 388  DLQRSVNVLYDSSKGLAKSEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYL 447

Query: 598  AVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYKLQASKD 777
            AVNEIGIPP FA RLTYPE+VTPWN +KL+ A+ NGADIHPGATHY+D + MYKLQA+  
Sbjct: 448  AVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYKLQAAPP 507

Query: 778  MRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAHVV 957
             R  I++ LP SR   +Q G  P+ +FE KVVYRHLQDGDIVLVNRQPTLHKPSMMAH V
Sbjct: 508  KRRAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFV 567

Query: 958  RVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIVPTSGSP 1137
            RVL GEKTIRMHYANCSTYNADFDGDEMNVH PQDEISR+EA+NI +ANKQYI P SG  
Sbjct: 568  RVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDA 627

Query: 1138 IRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
            +RGLIQDHIV AVLLTKLDTFL+REEY+
Sbjct: 628  VRGLIQDHIVGAVLLTKLDTFLSREEYN 655



 Score = 61.6 bits (148), Expect(2) = e-153
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
 Frame = +3

Query: 3   EMADEHSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLL 182
           E+    +S    T E  ++ D    + +++ SSG KHLL +EVE ILK+LWKNEA  C+L
Sbjct: 251 ELTSPGTSSRGSTNETRRISD--DTIKEMVASSGKKHLLTTEVESILKNLWKNEARFCML 308

Query: 183 MLDLQ--CRSQSPMERGYEIFF 242
           + D Q    + S   RGYE+FF
Sbjct: 309 LCDFQQNTLNVSDKGRGYEMFF 330


>dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
            Group]
          Length = 1748

 Score =  508 bits (1308), Expect(2) = e-153
 Identities = 245/334 (73%), Positives = 284/334 (85%)
 Frame = +1

Query: 220  RGAMRFFFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDSNNTD 399
            R     FFLK +LV PN+FRP+ +S+  G+MEHPQN LL+KVQ++N+AL+     SN+ +
Sbjct: 332  RRGYEMFFLKNLLVAPNRFRPSISSSL-GIMEHPQNVLLSKVQESNLALQQSIAASNHME 390

Query: 400  ILRRWMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVI 579
            +LRRWMDLQR+VNVLYDS+KGL K+EK +NGIRQLLEKK GILRQKMMGKRVN+ACRSVI
Sbjct: 391  VLRRWMDLQRNVNVLYDSSKGLSKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVI 450

Query: 580  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYK 759
            SPDPYLAVNEIGIPP FA RLTYPE+VTPWN +KL+ A+ NGADIHPGATHY+D + MYK
Sbjct: 451  SPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYK 510

Query: 760  LQASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPS 939
            LQA+   R  I++ LP SR   +Q G  P+ +FE KVVYRHLQDGD+VLVNRQPTLHKPS
Sbjct: 511  LQAAPPKRRAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDVVLVNRQPTLHKPS 570

Query: 940  MMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIV 1119
            MMAHVVRVL GEKTIRMHYANCSTYNADFDGDEMNVH PQDEISR+EA+NI +ANKQYI 
Sbjct: 571  MMAHVVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIG 630

Query: 1120 PTSGSPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
            P SG  +RGLIQDHI+ AVLLTKLDTFL+REEY+
Sbjct: 631  PRSGDAVRGLIQDHIIGAVLLTKLDTFLSREEYN 664



 Score = 62.4 bits (150), Expect(2) = e-153
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
 Frame = +3

Query: 3   EMADEHSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLL 182
           E+    +   + T E  ++ D    + +++ SSG KHLL +EVE ILKDLWK EA  C+L
Sbjct: 260 ELTSPGTLSRRSTNETRRISD--DTIKEMVASSGKKHLLTTEVESILKDLWKKEARFCML 317

Query: 183 MLDLQCRSQSPME--RGYEIFF 242
           + D Q  + S  E  RGYE+FF
Sbjct: 318 LCDFQQNTLSVSEKRRGYEMFF 339


>gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japonica Group]
          Length = 994

 Score =  508 bits (1308), Expect(2) = e-153
 Identities = 245/334 (73%), Positives = 284/334 (85%)
 Frame = +1

Query: 220  RGAMRFFFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDSNNTD 399
            R     FFLK +LV PN+FRP+ +S+  G+MEHPQN LL+KVQ++N+AL+     SN+ +
Sbjct: 114  RRGYEMFFLKNLLVAPNRFRPSISSSL-GIMEHPQNVLLSKVQESNLALQQSIAASNHME 172

Query: 400  ILRRWMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVI 579
            +LRRWMDLQR+VNVLYDS+KGL K+EK +NGIRQLLEKK GILRQKMMGKRVN+ACRSVI
Sbjct: 173  VLRRWMDLQRNVNVLYDSSKGLSKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVI 232

Query: 580  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYK 759
            SPDPYLAVNEIGIPP FA RLTYPE+VTPWN +KL+ A+ NGADIHPGATHY+D + MYK
Sbjct: 233  SPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYK 292

Query: 760  LQASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPS 939
            LQA+   R  I++ LP SR   +Q G  P+ +FE KVVYRHLQDGD+VLVNRQPTLHKPS
Sbjct: 293  LQAAPPKRRAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDVVLVNRQPTLHKPS 352

Query: 940  MMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIV 1119
            MMAHVVRVL GEKTIRMHYANCSTYNADFDGDEMNVH PQDEISR+EA+NI +ANKQYI 
Sbjct: 353  MMAHVVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIG 412

Query: 1120 PTSGSPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
            P SG  +RGLIQDHI+ AVLLTKLDTFL+REEY+
Sbjct: 413  PRSGDAVRGLIQDHIIGAVLLTKLDTFLSREEYN 446



 Score = 62.4 bits (150), Expect(2) = e-153
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
 Frame = +3

Query: 3   EMADEHSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLL 182
           E+    +   + T E  ++ D    + +++ SSG KHLL +EVE ILKDLWK EA  C+L
Sbjct: 42  ELTSPGTLSRRSTNETRRISD--DTIKEMVASSGKKHLLTTEVESILKDLWKKEARFCML 99

Query: 183 MLDLQCRSQSPME--RGYEIFF 242
           + D Q  + S  E  RGYE+FF
Sbjct: 100 LCDFQQNTLSVSEKRRGYEMFF 121


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
            italica]
          Length = 1682

 Score =  502 bits (1293), Expect(2) = e-151
 Identities = 246/333 (73%), Positives = 279/333 (83%)
 Frame = +1

Query: 220  RGAMRFFFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDSNNTD 399
            R     FFL ++LV PN+FRP+ +S+  G+MEHPQN LL+KVQ+AN+AL+  +  SN+ D
Sbjct: 342  RKGYEMFFLNSLLVAPNRFRPSTSSSL-GIMEHPQNVLLSKVQEANLALQHNSASSNHMD 400

Query: 400  ILRRWMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVI 579
            +LRRWMDLQRSVNVLYDS+KG+ KSEK ++GIRQLLEKK GILRQKMMGKRVN+ACRSVI
Sbjct: 401  VLRRWMDLQRSVNVLYDSSKGIVKSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVI 460

Query: 580  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYK 759
            SPDPYLAVNEIGIPP FA RLTYPE+VTPWN KKL+ AV NGADIHPGATHY+D   +YK
Sbjct: 461  SPDPYLAVNEIGIPPVFATRLTYPEKVTPWNAKKLQEAVRNGADIHPGATHYRDNSNIYK 520

Query: 760  LQASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPS 939
            LQA+   R  I++ LP SR   +Q G  P  +FE KVVYRHLQDGDIVLVNRQPTLHKPS
Sbjct: 521  LQAAPAKRRAIAKMLPASRGSISQPGKDPNCEFESKVVYRHLQDGDIVLVNRQPTLHKPS 580

Query: 940  MMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIV 1119
            MMAH VRVL GEKTIRMHYANCSTYNADFDGDEMNVH PQDEISR+EA+NI +ANKQYI 
Sbjct: 581  MMAHFVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAMNIVDANKQYIG 640

Query: 1120 PTSGSPIRGLIQDHIVSAVLLTKLDTFLTREEY 1218
            P SG  +RGLIQDHIV AVLLTK DT L+REEY
Sbjct: 641  PRSGDAVRGLIQDHIVGAVLLTKQDTLLSREEY 673



 Score = 62.8 bits (151), Expect(2) = e-151
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
 Frame = +3

Query: 12  DEHSSLEQKTKEKIKLDDLPPEVIK-LMQSSGPKHLLPSEVELILKDLWKNEADLCLLML 188
           DE  +  Q      ++  L  + IK  + SSG KHLLP+EVE ILK LWKNEA  C+L+ 
Sbjct: 270 DEERTSPQSKGSINEVRHLSDDTIKEFVASSGKKHLLPTEVESILKGLWKNEARFCMLLC 329

Query: 189 DLQ--CRSQSPMERGYEIFF 242
           D Q    S S   +GYE+FF
Sbjct: 330 DFQQDTLSVSEKRKGYEMFF 349


>ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [Sorghum bicolor]
            gi|241945458|gb|EES18603.1| hypothetical protein
            SORBIDRAFT_09g027223 [Sorghum bicolor]
          Length = 799

 Score =  497 bits (1280), Expect(2) = e-151
 Identities = 242/333 (72%), Positives = 278/333 (83%)
 Frame = +1

Query: 220  RGAMRFFFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDSNNTD 399
            R     FFL ++LV PN+FRP+  S+  G+MEHPQ+ LL+KVQ+AN+AL+     SN+ D
Sbjct: 326  RRGYEMFFLNSLLVAPNRFRPSTNSSL-GMMEHPQSVLLSKVQEANLALQHHNASSNHMD 384

Query: 400  ILRRWMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVI 579
            ++RRWMDLQRSVNVLYDS+KGL KSEK ++GIRQLLEKK GILRQKMMGKRVN+ACRSVI
Sbjct: 385  VIRRWMDLQRSVNVLYDSSKGLVKSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVI 444

Query: 580  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYK 759
            SPDPYLAVNEIGIPP FA RLTYPE+VTPWN KKL+ A+ NGADIHPGATHY+D++  YK
Sbjct: 445  SPDPYLAVNEIGIPPVFATRLTYPEKVTPWNTKKLQEAIRNGADIHPGATHYRDKNNTYK 504

Query: 760  LQASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPS 939
            LQA    R+ +++ LP SR    Q G  P  +FE KVVYRHLQDGDIVLVNRQPTLHKPS
Sbjct: 505  LQAVPAKRHSVAKMLPASRGSICQPGRDPNCEFESKVVYRHLQDGDIVLVNRQPTLHKPS 564

Query: 940  MMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIV 1119
            MMAH VRVL GE+T+RMHYANCSTYNADFDGDEMNVH PQDEISR+EA+NI +ANKQYI 
Sbjct: 565  MMAHFVRVLPGERTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAMNIVDANKQYIG 624

Query: 1120 PTSGSPIRGLIQDHIVSAVLLTKLDTFLTREEY 1218
            P SG  +RGLIQDHI+ AVLLTK DTFLTREEY
Sbjct: 625  PRSGDAVRGLIQDHIIGAVLLTKRDTFLTREEY 657



 Score = 65.1 bits (157), Expect(2) = e-151
 Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
 Frame = +3

Query: 78  VIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLLMLDLQCRSQSPME--RGYEIFF 242
           V +++ SSG KHLLP+EVE ILKDLW NEA  C+L+ D Q  + S  E  RGYE+FF
Sbjct: 277 VKEMVASSGKKHLLPTEVESILKDLWNNEARFCMLLCDFQKNTLSEPEKRRGYEMFF 333


>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
            brachyantha]
          Length = 1755

 Score =  506 bits (1303), Expect = e-141
 Identities = 248/344 (72%), Positives = 286/344 (83%)
 Frame = +1

Query: 190  TFNVEARVPWRGAMRFFFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALK 369
            T NV  +   +     FFLK +LV PN+FRP+  S+  G+MEHPQN LL+KVQ+AN+AL+
Sbjct: 317  TLNVSEK---KRGYEMFFLKNLLVAPNRFRPSIHSSL-GIMEHPQNILLSKVQEANLALQ 372

Query: 370  SCTGDSNNTDILRRWMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGK 549
                 SN+ ++LRRWMD+QRSVNVLYDS+KGL K+EK +NGIRQLLEKK GILRQKMMGK
Sbjct: 373  QSNAASNHMEVLRRWMDMQRSVNVLYDSSKGLAKNEKNANGIRQLLEKKEGILRQKMMGK 432

Query: 550  RVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGAT 729
            RVN+ACRSVISPDPYLAVNEIGIPP FA RLTYPE+VTPWN +KL+ A+ NGADIHPGAT
Sbjct: 433  RVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGAT 492

Query: 730  HYKDRDRMYKLQASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLV 909
            HY+D + MYKLQA+   R  I++ LP SR   +Q G  P+ +FE KVVYRHLQDGD+VLV
Sbjct: 493  HYRDNNNMYKLQAAPAKRRAIAKMLPASRGSISQAGKDPKCEFESKVVYRHLQDGDVVLV 552

Query: 910  NRQPTLHKPSMMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALN 1089
            NRQPTLHKPSMMAH VRVL GEKTIRMHYANCSTYNADFDGDEMNVH PQDEISR+EA+N
Sbjct: 553  NRQPTLHKPSMMAHFVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAIN 612

Query: 1090 IANANKQYIVPTSGSPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
            I +ANKQYI P SG  +RGLIQDHIV AVLLTKLDTFL+REEY+
Sbjct: 613  IVDANKQYIGPRSGDAVRGLIQDHIVGAVLLTKLDTFLSREEYN 656



 Score = 64.7 bits (156), Expect = 7e-08
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
 Frame = +3

Query: 3   EMADEHSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLL 182
           E+    +S    T E  ++ D    + +++ SSG KHLL +EVE ILKDLWKNEA  C+L
Sbjct: 252 ELTSPGTSSRGSTNETRRISD--DTIKEMVASSGKKHLLATEVESILKDLWKNEARFCML 309

Query: 183 MLDLQ--CRSQSPMERGYEIFF 242
           + D Q    + S  +RGYE+FF
Sbjct: 310 LCDFQQNTLNVSEKKRGYEMFF 331


>gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza brachyantha]
          Length = 1138

 Score =  506 bits (1303), Expect = e-141
 Identities = 248/344 (72%), Positives = 286/344 (83%)
 Frame = +1

Query: 190  TFNVEARVPWRGAMRFFFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALK 369
            T NV  +   +     FFLK +LV PN+FRP+  S+  G+MEHPQN LL+KVQ+AN+AL+
Sbjct: 317  TLNVSEK---KRGYEMFFLKNLLVAPNRFRPSIHSSL-GIMEHPQNILLSKVQEANLALQ 372

Query: 370  SCTGDSNNTDILRRWMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGK 549
                 SN+ ++LRRWMD+QRSVNVLYDS+KGL K+EK +NGIRQLLEKK GILRQKMMGK
Sbjct: 373  QSNAASNHMEVLRRWMDMQRSVNVLYDSSKGLAKNEKNANGIRQLLEKKEGILRQKMMGK 432

Query: 550  RVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGAT 729
            RVN+ACRSVISPDPYLAVNEIGIPP FA RLTYPE+VTPWN +KL+ A+ NGADIHPGAT
Sbjct: 433  RVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGAT 492

Query: 730  HYKDRDRMYKLQASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLV 909
            HY+D + MYKLQA+   R  I++ LP SR   +Q G  P+ +FE KVVYRHLQDGD+VLV
Sbjct: 493  HYRDNNNMYKLQAAPAKRRAIAKMLPASRGSISQAGKDPKCEFESKVVYRHLQDGDVVLV 552

Query: 910  NRQPTLHKPSMMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALN 1089
            NRQPTLHKPSMMAH VRVL GEKTIRMHYANCSTYNADFDGDEMNVH PQDEISR+EA+N
Sbjct: 553  NRQPTLHKPSMMAHFVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAIN 612

Query: 1090 IANANKQYIVPTSGSPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
            I +ANKQYI P SG  +RGLIQDHIV AVLLTKLDTFL+REEY+
Sbjct: 613  IVDANKQYIGPRSGDAVRGLIQDHIVGAVLLTKLDTFLSREEYN 656



 Score = 64.7 bits (156), Expect = 7e-08
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
 Frame = +3

Query: 3   EMADEHSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLL 182
           E+    +S    T E  ++ D    + +++ SSG KHLL +EVE ILKDLWKNEA  C+L
Sbjct: 252 ELTSPGTSSRGSTNETRRISD--DTIKEMVASSGKKHLLATEVESILKDLWKNEARFCML 309

Query: 183 MLDLQ--CRSQSPMERGYEIFF 242
           + D Q    + S  +RGYE+FF
Sbjct: 310 LCDFQQNTLNVSEKKRGYEMFF 331


>ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
            [Brachypodium distachyon]
          Length = 1868

 Score =  467 bits (1202), Expect(2) = e-137
 Identities = 227/333 (68%), Positives = 266/333 (79%)
 Frame = +1

Query: 220  RGAMRFFFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDSNNTD 399
            R     FFLK++LV PN+FRP+ +S+  G+MEHPQN LL KVQ+AN+A++      N+ D
Sbjct: 539  RRGYEMFFLKSLLVTPNRFRPSTSSSL-GIMEHPQNVLLGKVQEANLAVQHDKAHPNHMD 597

Query: 400  ILRRWMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVI 579
            I+ RW DLQ SVN+ YDS+KG G  + + NGIRQLL+KK G++RQKMMGKRVN +CR+VI
Sbjct: 598  IITRWRDLQTSVNLFYDSSKGFGNGDGDGNGIRQLLDKKGGVIRQKMMGKRVNHSCRTVI 657

Query: 580  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYK 759
            SPDP+LAVNEIGIPP  AL++TYPE V P N KKL+ A+ NG  IHPGATHYK    MYK
Sbjct: 658  SPDPFLAVNEIGIPPQAALKMTYPENVMPCNAKKLQEAINNGCGIHPGATHYKVNKNMYK 717

Query: 760  LQASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPS 939
            LQ  +  R  I++ LP SR   +Q G  P+ +FE KVVYRHLQDGDIVLVNRQPTLHKPS
Sbjct: 718  LQDDRSKRRAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDIVLVNRQPTLHKPS 777

Query: 940  MMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIV 1119
            MMAH VRVL GEKTIRMHYANCSTYNADFDGDEMNVH PQDEISR+EA+NI +ANKQYI 
Sbjct: 778  MMAHFVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAMNIVDANKQYIG 837

Query: 1120 PTSGSPIRGLIQDHIVSAVLLTKLDTFLTREEY 1218
            P SG  +RGLIQDHIVSAVLLTKLDTF++REEY
Sbjct: 838  PRSGDAVRGLIQDHIVSAVLLTKLDTFISREEY 870



 Score = 50.8 bits (120), Expect(2) = e-137
 Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
 Frame = +3

Query: 114 LLPSEVELILKDLWKNEADLCLLMLDLQCR-SQSPMERGYEIFF 242
           LL +EVE ILKDLW+NEA  C+L+ D Q   S S   RGYE+FF
Sbjct: 503 LLATEVESILKDLWENEARFCMLLCDFQQNLSVSEKRRGYEMFF 546


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  476 bits (1226), Expect(2) = e-137
 Identities = 239/330 (72%), Positives = 272/330 (82%), Gaps = 2/330 (0%)
 Frame = +1

Query: 238  FFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSC-TGDSNNTDILRRW 414
            FFL+ ILVPP KFRP +      VMEHPQ  LL KV QANIAL +    +S  + I+ RW
Sbjct: 407  FFLETILVPPIKFRPPSKGQI-SVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRW 465

Query: 415  MDLQRSVNVLYDSTKGLGKSEKES-NGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDP 591
            MDLQ+S+NVL+D     G+ ++++ +GI QLLEKK G+ RQKMMGKRVNFACRSVISPDP
Sbjct: 466  MDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDP 525

Query: 592  YLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYKLQAS 771
            YLAVNEIGIPPYFALRLTYPE+VTPWNV KLR A++NG +IHPGATHY D+    KL  +
Sbjct: 526  YLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVN 585

Query: 772  KDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAH 951
            K MR  ISRKLP+SR V AQ G   +++FEGK+VYRHLQDGDIVLVNRQPTLHKPS+MAH
Sbjct: 586  KKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAH 645

Query: 952  VVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIVPTSG 1131
            VVRVLKGEKT+RMHYANCSTYNADFDGDEMNVH PQDEISR+EA NI NAN QYIVP+ G
Sbjct: 646  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRG 705

Query: 1132 SPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
             PIRGLIQDHIVSAVLLTK DTFLTRE+Y+
Sbjct: 706  DPIRGLIQDHIVSAVLLTKKDTFLTREQYN 735



 Score = 41.2 bits (95), Expect(2) = e-137
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +3

Query: 99  SGPKHLLPSEVELILKDLWKNEADLCLLMLDL--QCRSQSPMERGYEIFFPE 248
           SGP  LLPSEV  I++ LW+NEA+LC  + D+  +    S  + GY +FF E
Sbjct: 361 SGP--LLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLE 410


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  476 bits (1226), Expect(2) = e-137
 Identities = 239/330 (72%), Positives = 272/330 (82%), Gaps = 2/330 (0%)
 Frame = +1

Query: 238  FFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSC-TGDSNNTDILRRW 414
            FFL+ ILVPP KFRP +      VMEHPQ  LL KV QANIAL +    +S  + I+ RW
Sbjct: 336  FFLETILVPPIKFRPPSKGQI-SVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRW 394

Query: 415  MDLQRSVNVLYDSTKGLGKSEKES-NGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDP 591
            MDLQ+S+NVL+D     G+ ++++ +GI QLLEKK G+ RQKMMGKRVNFACRSVISPDP
Sbjct: 395  MDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDP 454

Query: 592  YLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYKLQAS 771
            YLAVNEIGIPPYFALRLTYPE+VTPWNV KLR A++NG +IHPGATHY D+    KL  +
Sbjct: 455  YLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVN 514

Query: 772  KDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAH 951
            K MR  ISRKLP+SR V AQ G   +++FEGK+VYRHLQDGDIVLVNRQPTLHKPS+MAH
Sbjct: 515  KKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAH 574

Query: 952  VVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIVPTSG 1131
            VVRVLKGEKT+RMHYANCSTYNADFDGDEMNVH PQDEISR+EA NI NAN QYIVP+ G
Sbjct: 575  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRG 634

Query: 1132 SPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
             PIRGLIQDHIVSAVLLTK DTFLTRE+Y+
Sbjct: 635  DPIRGLIQDHIVSAVLLTKKDTFLTREQYN 664



 Score = 41.2 bits (95), Expect(2) = e-137
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +3

Query: 99  SGPKHLLPSEVELILKDLWKNEADLCLLMLDL--QCRSQSPMERGYEIFFPE 248
           SGP  LLPSEV  I++ LW+NEA+LC  + D+  +    S  + GY +FF E
Sbjct: 290 SGP--LLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLE 339


>gb|EMS52925.1| DNA-directed RNA polymerase I subunit rpa1 [Triticum urartu]
          Length = 1915

 Score =  469 bits (1206), Expect(2) = e-137
 Identities = 229/333 (68%), Positives = 274/333 (82%)
 Frame = +1

Query: 220  RGAMRFFFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDSNNTD 399
            R     FFLK++LVPPN+FRP+  S+  G+MEHPQN +L+KVQ+AN+AL+    + N+ D
Sbjct: 551  RRGYEMFFLKSMLVPPNRFRPSTNSSL-GIMEHPQNVMLSKVQEANLALQH--DNPNHMD 607

Query: 400  ILRRWMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVI 579
            IL RW DLQ SVN+ YDS+KGL KS+K+ +G+RQL++KK+GI+RQK+MGKRVN +CR+VI
Sbjct: 608  ILTRWRDLQTSVNLFYDSSKGLVKSDKDGHGVRQLVDKKTGIVRQKIMGKRVNHSCRTVI 667

Query: 580  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYK 759
            SPDP+LAVNEIGIPP  A +LTYPE+VTPWN K LR A+ NGA+IHPGATHYK  + +YK
Sbjct: 668  SPDPFLAVNEIGIPPAAASKLTYPEKVTPWNAKNLRGAIRNGAEIHPGATHYKVNNNLYK 727

Query: 760  LQASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPS 939
            LQA    R+  ++ L  SR   +Q G  P  +FE KVVYRH+QDGDIVLVNRQPTLHKPS
Sbjct: 728  LQADHSKRHPTAKTLLASRGSISQPGKDPRCEFESKVVYRHIQDGDIVLVNRQPTLHKPS 787

Query: 940  MMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIV 1119
            MMAHVVRVL GEKTIRMHYANCSTYNADFDGDEMNVH PQDEISR+EA+NI +ANKQYI 
Sbjct: 788  MMAHVVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIG 847

Query: 1120 PTSGSPIRGLIQDHIVSAVLLTKLDTFLTREEY 1218
            P SG  +RGLIQDHIV AVLLTK+DTFL+REEY
Sbjct: 848  PRSGEAVRGLIQDHIVGAVLLTKVDTFLSREEY 880



 Score = 47.8 bits (112), Expect(2) = e-137
 Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
 Frame = +3

Query: 99  SGPKHLLPSEVELILKDLWKNEADLCLLMLDLQ---CRSQSPMERGYEIFF 242
           S  + LL +EVE ILKDLW+ EA  C+L+ D Q   C S+    RGYE+FF
Sbjct: 510 SDDRPLLATEVESILKDLWEKEARFCMLLCDFQKNLCVSEK--RRGYEMFF 558


>gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indica Group]
          Length = 1350

 Score =  446 bits (1148), Expect(2) = e-134
 Identities = 221/334 (66%), Positives = 262/334 (78%)
 Frame = +1

Query: 220  RGAMRFFFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDSNNTD 399
            R     FFLK +LV PN+FRP+ +S+  G+MEHPQN LL+KVQ++N+AL+     SN+ +
Sbjct: 418  RRGYEMFFLKNLLVAPNRFRPSISSSL-GIMEHPQNVLLSKVQESNLALQQSIAASNHME 476

Query: 400  ILRRWMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVI 579
            +LRRWMDLQR+VNVLYDS+KGL K+EK +NGIRQLLEKK GILRQKMMGKRVN+ACR   
Sbjct: 477  VLRRWMDLQRNVNVLYDSSKGLSKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRF-- 534

Query: 580  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYK 759
                           Y    L + ++VTPWN +KL+ A+ NGADIHPGATHY+D + MYK
Sbjct: 535  ---------------YIISILFHVQKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYK 579

Query: 760  LQASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPS 939
            LQA+   R  I++ LP SR   +Q G  P+ +FE KVVYRHLQDGD+VLVNRQPTLHKPS
Sbjct: 580  LQAAPPKRRAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDVVLVNRQPTLHKPS 639

Query: 940  MMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIV 1119
            MMAHVVRVL GEKTIRMHYANCSTYNADFDGDEMNVH PQDEISR+EA+NI +ANKQYI 
Sbjct: 640  MMAHVVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIG 699

Query: 1120 PTSGSPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
            P SG  +RGLIQDHI+ AVLLTKLDTFL+REEY+
Sbjct: 700  PRSGDAVRGLIQDHIIGAVLLTKLDTFLSREEYN 733



 Score = 62.4 bits (150), Expect(2) = e-134
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
 Frame = +3

Query: 3   EMADEHSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLL 182
           E+    +   + T E  ++ D    + +++ SSG KHLL +EVE ILKDLWK EA  C+L
Sbjct: 346 ELTSPGTLSRRSTNETRRISD--DTIKEMVASSGKKHLLTTEVESILKDLWKKEARFCML 403

Query: 183 MLDLQCRSQSPME--RGYEIFF 242
           + D Q  + S  E  RGYE+FF
Sbjct: 404 LCDFQQNTLSVSEKRRGYEMFF 425


>gb|EMT12934.1| DNA-directed RNA polymerase I subunit RPA1 [Aegilops tauschii]
          Length = 1717

 Score =  458 bits (1178), Expect(2) = e-134
 Identities = 228/363 (62%), Positives = 277/363 (76%), Gaps = 30/363 (8%)
 Frame = +1

Query: 220  RGAMRFFFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDSNNTD 399
            R     FFLK++LVPPN+FRP+ +S+  G+MEHPQN +L+KVQ+AN+AL+  +   N+ D
Sbjct: 251  RRGYEMFFLKSMLVPPNRFRPSTSSSL-GIMEHPQNVMLSKVQEANLALQHDSAHPNHMD 309

Query: 400  ILRRWMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVI 579
            +L RW DLQ SVN+ YDS+KGLGKS K+ +G+RQL++KK+GI+RQK+MGKRVN +CR+VI
Sbjct: 310  VLTRWRDLQTSVNLFYDSSKGLGKSGKDGHGVRQLVDKKTGIVRQKIMGKRVNHSCRTVI 369

Query: 580  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYK 759
            SPDP+LAVNEIGIPP  AL+LTYPE+VTPWN KKL+ A+ NG++IHPGATH K  ++ YK
Sbjct: 370  SPDPFLAVNEIGIPPAAALKLTYPEKVTPWNAKKLQGAISNGSEIHPGATHLKVNNQKYK 429

Query: 760  LQASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQ------- 918
            LQ  +  R  I++ L  SR   +Q G  P+ +FE KVVYRH+QDGDIVLVNRQ       
Sbjct: 430  LQDERTKRRGIAKMLAASRGSISQPGKDPKCEFESKVVYRHIQDGDIVLVNRQSSTYKSI 489

Query: 919  -----------------------PTLHKPSMMAHVVRVLKGEKTIRMHYANCSTYNADFD 1029
                                   PTLHKPSMMAHVVRVL GEKTIRMHYANCSTYNADFD
Sbjct: 490  VGLLRYMQNIFFISWFHLNVKTMPTLHKPSMMAHVVRVLPGEKTIRMHYANCSTYNADFD 549

Query: 1030 GDEMNVHLPQDEISRSEALNIANANKQYIVPTSGSPIRGLIQDHIVSAVLLTKLDTFLTR 1209
            GDEMNVH PQDEISR+EA+NI +ANKQYI P SG  +RGLIQDHIV AVLLTK+DTFL+R
Sbjct: 550  GDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGEAVRGLIQDHIVGAVLLTKVDTFLSR 609

Query: 1210 EEY 1218
            EEY
Sbjct: 610  EEY 612



 Score = 47.8 bits (112), Expect(2) = e-134
 Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
 Frame = +3

Query: 99  SGPKHLLPSEVELILKDLWKNEADLCLLMLDLQ---CRSQSPMERGYEIFF 242
           S  + LL +EVE ILKDLW+ EA  C+L+ D Q   C S+    RGYE+FF
Sbjct: 210 SDDRPLLTTEVESILKDLWEKEARFCMLLCDFQQNLCVSEK--RRGYEMFF 258


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score =  465 bits (1197), Expect(2) = e-131
 Identities = 239/348 (68%), Positives = 272/348 (78%), Gaps = 20/348 (5%)
 Frame = +1

Query: 238  FFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSC-TGDSNNTDILRRW 414
            FFL+ ILVPP KFRP +      VMEHPQ  LL KV QANIAL +    +S  + I+ RW
Sbjct: 455  FFLETILVPPIKFRPPSKGQI-SVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRW 513

Query: 415  MDLQRSVNVLYDSTKGLGKSEKES-NGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDP 591
            MDLQ+S+NVL+D     G+ ++++ +GI QLLEKK G+ RQKMMGKRVNFACRSVISPDP
Sbjct: 514  MDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDP 573

Query: 592  YLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYKLQAS 771
            YLAVNEIGIPPYFALRLTYPE+VTPWNV KLR A++NG +IHPGATHY D+    KL  +
Sbjct: 574  YLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVN 633

Query: 772  KDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAH 951
            K MR  ISRKLP+SR V AQ G   +++FEGK+VYRHLQDGDIVLVNRQPTLHKPS+MAH
Sbjct: 634  KKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAH 693

Query: 952  VVRVLKGEKTIRMHYANC------------------STYNADFDGDEMNVHLPQDEISRS 1077
            VVRVLKGEKT+RMHYANC                  STYNADFDGDEMNVH PQDEISR+
Sbjct: 694  VVRVLKGEKTLRMHYANCRVESEHISMLDLDDCSDSSTYNADFDGDEMNVHFPQDEISRA 753

Query: 1078 EALNIANANKQYIVPTSGSPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
            EA NI NAN QYIVP+ G PIRGLIQDHIVSAVLLTK DTFLTRE+Y+
Sbjct: 754  EAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYN 801



 Score = 31.2 bits (69), Expect(2) = e-131
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +3

Query: 123 SEVELILKDLWKNEADLCLLMLDL--QCRSQSPMERGYEIFFPE 248
           ++V  I++ LW+NEA+LC  + D+  +    S  + GY +FF E
Sbjct: 415 TKVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLE 458


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  447 bits (1150), Expect(2) = e-130
 Identities = 220/330 (66%), Positives = 266/330 (80%), Gaps = 2/330 (0%)
 Frame = +1

Query: 238  FFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDSNNTDILRRWM 417
            FFL+ ILVPP KFRP        VMEHPQ  LL+KV Q+NI+L     +  ++ I+RRW+
Sbjct: 336  FFLETILVPPIKFRPPTKG-GDSVMEHPQTVLLSKVLQSNISLGDAHINKEHSKIVRRWL 394

Query: 418  DLQRSVNVLYDSTKGLGKSEKE-SNGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDPY 594
            DLQ+S+N L+DS    G  ++E + GI QLLEKK G+ RQKMMGKRVN+ACRSVISPDPY
Sbjct: 395  DLQQSINTLFDSKTAKGPGQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPY 454

Query: 595  LAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYKLQASK 774
            + VNEIGIPP FA++LTYPERVTPWN+ KLR AV+NG++ HPGATHY D+  + KL  ++
Sbjct: 455  IGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPAR 514

Query: 775  DMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAHV 954
              R  ISRKLP+SR    Q G G E +FEGK+VYRHLQDGD+VLVNRQPTLHKPS+MAHV
Sbjct: 515  KARISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHV 574

Query: 955  VRVLKGEKTIRMHYANCS-TYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIVPTSG 1131
            VRVLKGEKT+RMHYANCS TYNADFDGDEMNVH PQDE+SR+EA NI NAN Q++ P++G
Sbjct: 575  VRVLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNG 634

Query: 1132 SPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
             P+RGLIQDHIVSAVLLTK DTFL+++E++
Sbjct: 635  EPLRGLIQDHIVSAVLLTKKDTFLSQDEFN 664



 Score = 47.0 bits (110), Expect(2) = e-130
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
 Frame = +3

Query: 3   EMADEHSSLEQKTKEKIKLDDLPPEVIKL--MQSSGPKHLLPSEVELILKDLWKNEADLC 176
           E  D+HS  ++  K++ K      EV++    +S+  K LLPSEV+  L+ LWKNEA +C
Sbjct: 262 EPGDQHSGTKKHKKKERK------EVLEFTRQKSTFSKQLLPSEVKEKLELLWKNEARIC 315

Query: 177 LLMLDLQCRSQSPMERGYEIFFPE 248
             + DLQ +     + G  +FF E
Sbjct: 316 SFISDLQQQEFGKRKAGPAMFFLE 339


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  451 bits (1159), Expect(2) = e-130
 Identities = 227/330 (68%), Positives = 266/330 (80%), Gaps = 2/330 (0%)
 Frame = +1

Query: 238  FFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDS--NNTDILRR 411
            FFL+ ILVPP KFR A       VMEHPQ  LL+KV QANI+L +   ++  ++  ++R 
Sbjct: 343  FFLETILVPPIKFR-APTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRL 401

Query: 412  WMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDP 591
            WMDLQ+SVN+L+DS   + +    S+GI QLLEKK G+ RQKMMGKRVNFACRSVISPDP
Sbjct: 402  WMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDP 461

Query: 592  YLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYKLQAS 771
            YLAVNEIGIPPYFALRLTYPERVTPWNV KLR A++NG++ HPGATHY D+    +L  S
Sbjct: 462  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPS 521

Query: 772  KDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAH 951
            +  R  ISRKLP+SR   AQ G   + +FEGK+V RHLQDGD+VLVNRQPTLHKPS+MAH
Sbjct: 522  QKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAH 581

Query: 952  VVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIVPTSG 1131
            VVRVLKGEKTIRMHYANCSTYNADFDGDE+NVH PQDEISR+EA NI NAN QY+ P++G
Sbjct: 582  VVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNG 641

Query: 1132 SPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
             PIR LIQDHIVSAVLLTK DTFL+R+E++
Sbjct: 642  EPIRALIQDHIVSAVLLTKRDTFLSRDEFN 671



 Score = 42.7 bits (99), Expect(2) = e-130
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +3

Query: 42  KEKIKLDDLPPEVIKLMQS-SGPKHLLPSEVELILKDLWKNEADLCLLMLDLQCRSQSPM 218
           K + K   +P E +K     SGP  LLPSEV+ I K LW+NE +LC ++ D+Q +     
Sbjct: 280 KARKKKAQVPLEFMKQKNLFSGP--LLPSEVKKITKLLWENEVELCSIISDIQ-QQGFGK 336

Query: 219 ERGYEIFFPE 248
           + GY +FF E
Sbjct: 337 KVGYSMFFLE 346


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  451 bits (1159), Expect(2) = e-130
 Identities = 227/330 (68%), Positives = 266/330 (80%), Gaps = 2/330 (0%)
 Frame = +1

Query: 238  FFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDS--NNTDILRR 411
            FFL+ ILVPP KFR A       VMEHPQ  LL+KV QANI+L +   ++  ++  ++R 
Sbjct: 343  FFLETILVPPIKFR-APTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRL 401

Query: 412  WMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDP 591
            WMDLQ+SVN+L+DS   + +    S+GI QLLEKK G+ RQKMMGKRVNFACRSVISPDP
Sbjct: 402  WMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDP 461

Query: 592  YLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYKLQAS 771
            YLAVNEIGIPPYFALRLTYPERVTPWNV KLR A++NG++ HPGATHY D+    +L  S
Sbjct: 462  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPS 521

Query: 772  KDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAH 951
            +  R  ISRKLP+SR   AQ G   + +FEGK+V RHLQDGD+VLVNRQPTLHKPS+MAH
Sbjct: 522  QKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAH 581

Query: 952  VVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIVPTSG 1131
            VVRVLKGEKTIRMHYANCSTYNADFDGDE+NVH PQDEISR+EA NI NAN QY+ P++G
Sbjct: 582  VVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNG 641

Query: 1132 SPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
             PIR LIQDHIVSAVLLTK DTFL+R+E++
Sbjct: 642  EPIRALIQDHIVSAVLLTKRDTFLSRDEFN 671



 Score = 42.7 bits (99), Expect(2) = e-130
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +3

Query: 42  KEKIKLDDLPPEVIKLMQS-SGPKHLLPSEVELILKDLWKNEADLCLLMLDLQCRSQSPM 218
           K + K   +P E +K     SGP  LLPSEV+ I K LW+NE +LC ++ D+Q +     
Sbjct: 280 KARKKKAQVPLEFMKQKNLFSGP--LLPSEVKKITKLLWENEVELCSIISDIQ-QQGFGK 336

Query: 219 ERGYEIFFPE 248
           + GY +FF E
Sbjct: 337 KVGYSMFFLE 346


>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  451 bits (1159), Expect(2) = e-130
 Identities = 227/330 (68%), Positives = 266/330 (80%), Gaps = 2/330 (0%)
 Frame = +1

Query: 238  FFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDS--NNTDILRR 411
            FFL+ ILVPP KFR A       VMEHPQ  LL+KV QANI+L +   ++  ++  ++R 
Sbjct: 51   FFLETILVPPIKFR-APTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRL 109

Query: 412  WMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDP 591
            WMDLQ+SVN+L+DS   + +    S+GI QLLEKK G+ RQKMMGKRVNFACRSVISPDP
Sbjct: 110  WMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDP 169

Query: 592  YLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYKLQAS 771
            YLAVNEIGIPPYFALRLTYPERVTPWNV KLR A++NG++ HPGATHY D+    +L  S
Sbjct: 170  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPS 229

Query: 772  KDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAH 951
            +  R  ISRKLP+SR   AQ G   + +FEGK+V RHLQDGD+VLVNRQPTLHKPS+MAH
Sbjct: 230  QKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAH 289

Query: 952  VVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIVPTSG 1131
            VVRVLKGEKTIRMHYANCSTYNADFDGDE+NVH PQDEISR+EA NI NAN QY+ P++G
Sbjct: 290  VVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNG 349

Query: 1132 SPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
             PIR LIQDHIVSAVLLTK DTFL+R+E++
Sbjct: 350  EPIRALIQDHIVSAVLLTKRDTFLSRDEFN 379



 Score = 42.0 bits (97), Expect(2) = e-130
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +3

Query: 99  SGPKHLLPSEVELILKDLWKNEADLCLLMLDLQCRSQSPMERGYEIFFPE 248
           SGP  LLPSEV+ I K LW+NE +LC ++ D+Q +     + GY +FF E
Sbjct: 8   SGP--LLPSEVKKITKLLWENEVELCSIISDIQ-QQGFGKKVGYSMFFLE 54


>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  451 bits (1159), Expect(2) = e-130
 Identities = 227/330 (68%), Positives = 266/330 (80%), Gaps = 2/330 (0%)
 Frame = +1

Query: 238  FFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIALKSCTGDS--NNTDILRR 411
            FFL+ ILVPP KFR A       VMEHPQ  LL+KV QANI+L +   ++  ++  ++R 
Sbjct: 51   FFLETILVPPIKFR-APTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRL 109

Query: 412  WMDLQRSVNVLYDSTKGLGKSEKESNGIRQLLEKKSGILRQKMMGKRVNFACRSVISPDP 591
            WMDLQ+SVN+L+DS   + +    S+GI QLLEKK G+ RQKMMGKRVNFACRSVISPDP
Sbjct: 110  WMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDP 169

Query: 592  YLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYKLQAS 771
            YLAVNEIGIPPYFALRLTYPERVTPWNV KLR A++NG++ HPGATHY D+    +L  S
Sbjct: 170  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPS 229

Query: 772  KDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAH 951
            +  R  ISRKLP+SR   AQ G   + +FEGK+V RHLQDGD+VLVNRQPTLHKPS+MAH
Sbjct: 230  QKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAH 289

Query: 952  VVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIVPTSG 1131
            VVRVLKGEKTIRMHYANCSTYNADFDGDE+NVH PQDEISR+EA NI NAN QY+ P++G
Sbjct: 290  VVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNG 349

Query: 1132 SPIRGLIQDHIVSAVLLTKLDTFLTREEYH 1221
             PIR LIQDHIVSAVLLTK DTFL+R+E++
Sbjct: 350  EPIRALIQDHIVSAVLLTKRDTFLSRDEFN 379



 Score = 42.0 bits (97), Expect(2) = e-130
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +3

Query: 99  SGPKHLLPSEVELILKDLWKNEADLCLLMLDLQCRSQSPMERGYEIFFPE 248
           SGP  LLPSEV+ I K LW+NE +LC ++ D+Q +     + GY +FF E
Sbjct: 8   SGP--LLPSEVKKITKLLWENEVELCSIISDIQ-QQGFGKKVGYSMFFLE 54


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  440 bits (1132), Expect(2) = e-129
 Identities = 229/332 (68%), Positives = 263/332 (79%), Gaps = 5/332 (1%)
 Frame = +1

Query: 238  FFLKAILVPPNKFRPAAASTARGVMEHPQNTLLNKVQQANIAL-KSCTGDSNNTDILRRW 414
            FFL+++LVPP KFRP A      VMEHPQ  LLNKV Q+NI+L       S ++ I+R W
Sbjct: 319  FFLESVLVPPIKFRPPAKG-GDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLW 377

Query: 415  MDLQRSVNVLYDSTKGLGKSEKESN-GIRQLLEKKSGILRQKMMGKRVNFACRSVISPDP 591
            MDLQ+S+N+L+DS    G  + +++ GI QLLEKK G+ RQKMMGKRVNFACRSVISPDP
Sbjct: 378  MDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDP 437

Query: 592  YLAVNEIGIPPYFALRLTYPERVTPWNVKKLRLAVMNGADIHPGATHYKDRDRMYK--LQ 765
            YLAVNEIGIPPYFALRLTYPERVT WNV+KLR A++NG + HPGATHY D+    K  L+
Sbjct: 438  YLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLK 497

Query: 766  ASKDMRNVISRKLPTSRAVTAQHGMGPESDFEGKVVYRHLQDGDIVLVNRQPTLHKPSMM 945
             S+  R  ISRKLP+SR V    G   + +FEGK+V RHLQDGDIVLVNRQPTLHKPS+M
Sbjct: 498  PSRKSRISISRKLPSSRGVVVDQGC-DDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIM 556

Query: 946  AHVVRVLKGEKTIRMHYANCS-TYNADFDGDEMNVHLPQDEISRSEALNIANANKQYIVP 1122
            AHVVRVLKGEKTIRMHYANCS TYNADFDGDEMNVH PQDEISR+EA NI NAN QY+ P
Sbjct: 557  AHVVRVLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKP 616

Query: 1123 TSGSPIRGLIQDHIVSAVLLTKLDTFLTREEY 1218
            TSG PIR LIQDHI+SAVLLTK DTFL  +E+
Sbjct: 617  TSGEPIRALIQDHIISAVLLTKKDTFLNFDEF 648



 Score = 51.2 bits (121), Expect(2) = e-129
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
 Frame = +3

Query: 9   ADEHSSLEQKTKEKIKLDD---LPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCL 179
           A+  SSLE++T  +  ++D   + PEV  + ++    HLLPSEV+ ILK LWKNEA LC 
Sbjct: 242 AEGVSSLEEETTTEATVEDFEDVSPEVF-MQKNFSSGHLLPSEVKDILKRLWKNEALLCS 300

Query: 180 LMLDLQCRSQSPMERGYEIFFPE 248
            + D+  +     + G+ +FF E
Sbjct: 301 FISDISQQGHG-NKAGHSMFFLE 322