BLASTX nr result
ID: Zingiber23_contig00041673
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00041673
(301 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004235466.1| PREDICTED: pentatricopeptide repeat-containi... 125 6e-27
ref|XP_006347555.1| PREDICTED: pentatricopeptide repeat-containi... 123 2e-26
ref|XP_006347554.1| PREDICTED: pentatricopeptide repeat-containi... 123 2e-26
ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containi... 120 1e-25
emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera] 120 1e-25
ref|XP_002309826.2| pentatricopeptide repeat-containing family p... 119 3e-25
ref|XP_004298102.1| PREDICTED: pentatricopeptide repeat-containi... 119 4e-25
gb|EOY10001.1| Pentatricopeptide repeat (PPR) superfamily protei... 118 7e-25
ref|XP_006491812.1| PREDICTED: pentatricopeptide repeat-containi... 117 2e-24
ref|XP_006491807.1| PREDICTED: pentatricopeptide repeat-containi... 117 2e-24
gb|EXB97274.1| hypothetical protein L484_024135 [Morus notabilis] 117 2e-24
ref|XP_002519997.1| pentatricopeptide repeat-containing protein,... 117 2e-24
ref|XP_006406650.1| hypothetical protein EUTSA_v10019896mg [Eutr... 114 1e-23
ref|XP_006372940.1| hypothetical protein POPTR_0017s06420g [Popu... 114 2e-23
ref|XP_002327945.1| predicted protein [Populus trichocarpa] 114 2e-23
ref|XP_006878653.1| hypothetical protein AMTR_s00011p00265800 [A... 112 5e-23
ref|XP_006296830.1| hypothetical protein CARUB_v10012815mg [Caps... 112 7e-23
ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata] g... 112 7e-23
ref|NP_188439.2| pentatricopeptide repeat-containing protein [Ar... 108 1e-21
gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis th... 108 1e-21
>ref|XP_004235466.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Solanum lycopersicum]
Length = 1464
Score = 125 bits (314), Expect = 6e-27
Identities = 63/98 (64%), Positives = 72/98 (73%)
Frame = -3
Query: 296 DPPEDTKTDSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADV 117
DP D + + + SRTRAKKMTKLALKRA+DWRQRVQFL D+IL L VADV
Sbjct: 122 DPNGFQSNDETQEVLGRPSRTRAKKMTKLALKRAKDWRQRVQFLTDKILGLKSEEFVADV 181
Query: 116 LDRRGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
LD + VQMTPTD FVV+ VG+SSW RALEV+EWL LR
Sbjct: 182 LDEKMVQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLR 219
>ref|XP_006347555.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like isoform X2 [Solanum tuberosum]
Length = 1277
Score = 123 bits (309), Expect = 2e-26
Identities = 61/90 (67%), Positives = 70/90 (77%)
Frame = -3
Query: 272 DSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDRRGVQM 93
D + + + SRTRAKKMTKLALKRA+DWRQRVQFL D+IL L VADVLD + VQM
Sbjct: 129 DETQEVLGRPSRTRAKKMTKLALKRAKDWRQRVQFLTDKILGLKSEEFVADVLDEKMVQM 188
Query: 92 TPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
TPTD FVV+ VG+SSW RALEV+EWL LR
Sbjct: 189 TPTDFCFVVKWVGQSSWQRALEVYEWLNLR 218
>ref|XP_006347554.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like isoform X1 [Solanum tuberosum]
Length = 1476
Score = 123 bits (309), Expect = 2e-26
Identities = 61/90 (67%), Positives = 70/90 (77%)
Frame = -3
Query: 272 DSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDRRGVQM 93
D + + + SRTRAKKMTKLALKRA+DWRQRVQFL D+IL L VADVLD + VQM
Sbjct: 129 DETQEVLGRPSRTRAKKMTKLALKRAKDWRQRVQFLTDKILGLKSEEFVADVLDEKMVQM 188
Query: 92 TPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
TPTD FVV+ VG+SSW RALEV+EWL LR
Sbjct: 189 TPTDFCFVVKWVGQSSWQRALEVYEWLNLR 218
>ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 120 bits (302), Expect = 1e-25
Identities = 61/90 (67%), Positives = 67/90 (74%)
Frame = -3
Query: 272 DSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDRRGVQM 93
D + K S+ R KKMTKLALKRA+DWRQRVQFL DRIL L VADVLD R VQM
Sbjct: 92 DETQDFLGKTSKNRVKKMTKLALKRAKDWRQRVQFLTDRILGLKSEEFVADVLDDRKVQM 151
Query: 92 TPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
TPTD FVV+ VG+SSW RALEV+EWL LR
Sbjct: 152 TPTDFCFVVKWVGQSSWQRALEVYEWLNLR 181
>emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 120 bits (302), Expect = 1e-25
Identities = 61/90 (67%), Positives = 67/90 (74%)
Frame = -3
Query: 272 DSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDRRGVQM 93
D + K S+ R KKMTKLALKRA+DWRQRVQFL DRIL L VADVLD R VQM
Sbjct: 124 DETQDFLGKTSKNRVKKMTKLALKRAKDWRQRVQFLTDRILGLKSEEFVADVLDDRKVQM 183
Query: 92 TPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
TPTD FVV+ VG+SSW RALEV+EWL LR
Sbjct: 184 TPTDFCFVVKWVGQSSWQRALEVYEWLNLR 213
>ref|XP_002309826.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550333963|gb|EEE90276.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 1484
Score = 119 bits (299), Expect = 3e-25
Identities = 61/99 (61%), Positives = 74/99 (74%)
Frame = -3
Query: 299 SDPPEDTKTDSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVAD 120
SD +D + E + ++SRTR KKM KLALKRA+DWR+RV++L DRIL L VAD
Sbjct: 120 SDDDDDDGSQE-EKLRWRKSRTRVKKMNKLALKRAKDWRERVKYLTDRILGLTQDQFVAD 178
Query: 119 VLDRRGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
VLD R VQMTPTDL FVV++VG+ SW RALEV+EWL LR
Sbjct: 179 VLDDRKVQMTPTDLCFVVKSVGQESWHRALEVYEWLNLR 217
>ref|XP_004298102.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 1496
Score = 119 bits (298), Expect = 4e-25
Identities = 58/92 (63%), Positives = 70/92 (76%)
Frame = -3
Query: 278 KTDSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDRRGV 99
K D + + + S+T+AKKMTKLALKRA+DWR+RV+F +DRIL L VADVLD R V
Sbjct: 132 KNDETQLVLGRPSKTKAKKMTKLALKRAKDWRERVRFYSDRILGLKSDEFVADVLDDRKV 191
Query: 98 QMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
QMTPTD FVV+ VG+ SW RALEV+EWL LR
Sbjct: 192 QMTPTDFCFVVKWVGQKSWQRALEVYEWLNLR 223
>gb|EOY10001.1| Pentatricopeptide repeat (PPR) superfamily protein [Theobroma
cacao]
Length = 1458
Score = 118 bits (296), Expect = 7e-25
Identities = 61/101 (60%), Positives = 72/101 (71%), Gaps = 6/101 (5%)
Frame = -3
Query: 287 EDTKTDSFETIDSKQ------SRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHV 126
E + ++S E D Q S+TR KKMTKLALKRA+DWR+RV+FL DRIL L V
Sbjct: 103 ESSTSESLEVNDETQEKLGRVSKTRVKKMTKLALKRAKDWRERVKFLTDRILGLEQDQFV 162
Query: 125 ADVLDRRGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
ADVLD R VQMTPTD FVV+ VG+ +W RALEV+EWL LR
Sbjct: 163 ADVLDDRKVQMTPTDFCFVVKLVGQENWQRALEVYEWLNLR 203
>ref|XP_006491812.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like isoform X6 [Citrus sinensis]
Length = 1278
Score = 117 bits (293), Expect = 2e-24
Identities = 57/90 (63%), Positives = 69/90 (76%)
Frame = -3
Query: 272 DSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDRRGVQM 93
D + + S+T+AKKMTKLALKRA+DWR+RV+FL D+IL L + VADVLD R VQM
Sbjct: 111 DESQVAVERVSKTKAKKMTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQM 170
Query: 92 TPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
TPTD FVV+ VG+ SW RALEV+EWL LR
Sbjct: 171 TPTDYCFVVKWVGQVSWQRALEVYEWLNLR 200
>ref|XP_006491807.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like isoform X1 [Citrus sinensis]
gi|568877582|ref|XP_006491808.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like isoform X2 [Citrus sinensis]
gi|568877584|ref|XP_006491809.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like isoform X3 [Citrus sinensis]
gi|568877586|ref|XP_006491810.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like isoform X4 [Citrus sinensis]
gi|568877588|ref|XP_006491811.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like isoform X5 [Citrus sinensis]
Length = 1459
Score = 117 bits (293), Expect = 2e-24
Identities = 57/90 (63%), Positives = 69/90 (76%)
Frame = -3
Query: 272 DSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDRRGVQM 93
D + + S+T+AKKMTKLALKRA+DWR+RV+FL D+IL L + VADVLD R VQM
Sbjct: 111 DESQVAVERVSKTKAKKMTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQM 170
Query: 92 TPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
TPTD FVV+ VG+ SW RALEV+EWL LR
Sbjct: 171 TPTDYCFVVKWVGQVSWQRALEVYEWLNLR 200
>gb|EXB97274.1| hypothetical protein L484_024135 [Morus notabilis]
Length = 1494
Score = 117 bits (292), Expect = 2e-24
Identities = 57/92 (61%), Positives = 69/92 (75%)
Frame = -3
Query: 278 KTDSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDRRGV 99
+ D + + + SRTR KKM KLALKRA+DWR+RV++L DRIL L VADVLD R V
Sbjct: 132 ENDETQQVLGRPSRTRVKKMNKLALKRAKDWRERVKYLTDRILGLKSDEFVADVLDDRKV 191
Query: 98 QMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
QMTPTD FVV+ VG++SW RALEV+EWL LR
Sbjct: 192 QMTPTDFCFVVKWVGQASWHRALEVYEWLNLR 223
>ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540761|gb|EEF42321.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1429
Score = 117 bits (292), Expect = 2e-24
Identities = 61/96 (63%), Positives = 68/96 (70%), Gaps = 6/96 (6%)
Frame = -3
Query: 272 DSFETIDSKQ------SRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLD 111
+S E D Q SRTR KKM KLALKRA+DWR+RV+FL DRIL L P VADVLD
Sbjct: 74 ESVEVDDESQERLGRLSRTRVKKMNKLALKRAKDWRERVKFLTDRILGLRPDQFVADVLD 133
Query: 110 RRGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
VQMTPTD FVV+ VG+ +W RALEVFEWL LR
Sbjct: 134 DSKVQMTPTDFCFVVKWVGQENWQRALEVFEWLNLR 169
>ref|XP_006406650.1| hypothetical protein EUTSA_v10019896mg [Eutrema salsugineum]
gi|557107796|gb|ESQ48103.1| hypothetical protein
EUTSA_v10019896mg [Eutrema salsugineum]
Length = 1455
Score = 114 bits (286), Expect = 1e-23
Identities = 61/111 (54%), Positives = 72/111 (64%), Gaps = 15/111 (13%)
Frame = -3
Query: 290 PEDTKTDSFETIDSKQS---------------RTRAKKMTKLALKRARDWRQRVQFLADR 156
P D DS E +DS S R R KKM K+AL RA+DWR+RV+FL D+
Sbjct: 89 PTDVAEDSGEFVDSVSSSEQQKANEEAAVASRRRRVKKMNKVALIRAKDWRERVKFLTDK 148
Query: 155 ILALAPSAHVADVLDRRGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
IL L P+ VAD+LD R VQMTPTD FVV++VG+ SW RALEVFEWL LR
Sbjct: 149 ILGLKPNQFVADILDARLVQMTPTDYCFVVKSVGQESWQRALEVFEWLNLR 199
>ref|XP_006372940.1| hypothetical protein POPTR_0017s06420g [Populus trichocarpa]
gi|566211778|ref|XP_006372941.1| pentatricopeptide
repeat-containing family protein [Populus trichocarpa]
gi|550319588|gb|ERP50737.1| hypothetical protein
POPTR_0017s06420g [Populus trichocarpa]
gi|550319589|gb|ERP50738.1| pentatricopeptide
repeat-containing family protein [Populus trichocarpa]
Length = 1465
Score = 114 bits (284), Expect = 2e-23
Identities = 56/98 (57%), Positives = 69/98 (70%)
Frame = -3
Query: 296 DPPEDTKTDSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADV 117
D D + E + +QSRTR KKM KLAL++A+DWR+RV++ DRIL L VADV
Sbjct: 122 DVDVDDDGNEEEKLGWRQSRTRVKKMNKLALRKAKDWRERVKYFTDRILGLKQDQFVADV 181
Query: 116 LDRRGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
LD R VQMTPTD FVV++VG+ SW RA EV+EWL LR
Sbjct: 182 LDDRKVQMTPTDFCFVVKSVGQESWHRAFEVYEWLNLR 219
>ref|XP_002327945.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 114 bits (284), Expect = 2e-23
Identities = 56/98 (57%), Positives = 69/98 (70%)
Frame = -3
Query: 296 DPPEDTKTDSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADV 117
D D + E + +QSRTR KKM KLAL++A+DWR+RV++ DRIL L VADV
Sbjct: 118 DVDVDDDGNEEEKLGWRQSRTRVKKMNKLALRKAKDWRERVKYFTDRILGLKQDQFVADV 177
Query: 116 LDRRGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
LD R VQMTPTD FVV++VG+ SW RA EV+EWL LR
Sbjct: 178 LDDRKVQMTPTDFCFVVKSVGQESWHRAFEVYEWLNLR 215
>ref|XP_006878653.1| hypothetical protein AMTR_s00011p00265800 [Amborella trichopoda]
gi|548831996|gb|ERM94798.1| hypothetical protein
AMTR_s00011p00265800 [Amborella trichopoda]
Length = 1522
Score = 112 bits (280), Expect = 5e-23
Identities = 56/87 (64%), Positives = 68/87 (78%)
Frame = -3
Query: 263 ETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDRRGVQMTPT 84
ET+ S + RTRAKK++KLALKRA+DWRQRVQ L D IL L PS VADVLD +Q++PT
Sbjct: 170 ETLRSDR-RTRAKKLSKLALKRAKDWRQRVQSLTDEILKLQPSEFVADVLDANKIQLSPT 228
Query: 83 DLAFVVRTVGRSSWTRALEVFEWLTLR 3
D FVV+ VG S+W RALE++EWL LR
Sbjct: 229 DYCFVVKWVGHSNWQRALEIYEWLNLR 255
>ref|XP_006296830.1| hypothetical protein CARUB_v10012815mg [Capsella rubella]
gi|482565539|gb|EOA29728.1| hypothetical protein
CARUB_v10012815mg [Capsella rubella]
Length = 1448
Score = 112 bits (279), Expect = 7e-23
Identities = 55/95 (57%), Positives = 71/95 (74%)
Frame = -3
Query: 287 EDTKTDSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDR 108
+ TK D + S+ R R KK+ K+AL +A+DWR+RV+FL D+IL+L P+ VAD+LD
Sbjct: 100 QKTKGDEAAIVASR--RRRVKKLNKVALIKAKDWRERVKFLTDKILSLKPNQFVADILDA 157
Query: 107 RGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
R VQMTPTD FVV++VG+ SW RALEVFEWL LR
Sbjct: 158 RPVQMTPTDYCFVVKSVGQESWQRALEVFEWLNLR 192
>ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata
subsp. lyrata]
Length = 1429
Score = 112 bits (279), Expect = 7e-23
Identities = 56/95 (58%), Positives = 70/95 (73%)
Frame = -3
Query: 287 EDTKTDSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDR 108
E KT + S+ R R KKM K+AL +A+DWR+RV+FL D+IL+L P+ VAD+LD
Sbjct: 92 EHQKTKDETAVASR--RRRVKKMNKVALIKAKDWRERVKFLTDKILSLKPNQFVADILDA 149
Query: 107 RGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
R VQMTPTD FVV++VG+ SW RALEVFEWL LR
Sbjct: 150 RPVQMTPTDYCFVVKSVGQESWQRALEVFEWLNLR 184
>ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1270; Flags: Precursor
gi|9294066|dbj|BAB02023.1| unnamed protein product
[Arabidopsis thaliana] gi|332642528|gb|AEE76049.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 1440
Score = 108 bits (269), Expect = 1e-21
Identities = 54/95 (56%), Positives = 70/95 (73%)
Frame = -3
Query: 287 EDTKTDSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDR 108
E+ KT + ++ R R KKM K+AL +A+DWR+RV+FL D+IL+L + VAD+LD
Sbjct: 92 EEQKTKDETAVATR--RRRVKKMNKVALIKAKDWRERVKFLTDKILSLKSNQFVADILDA 149
Query: 107 RGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
R VQMTPTD FVV++VG+ SW RALEVFEWL LR
Sbjct: 150 RLVQMTPTDYCFVVKSVGQESWQRALEVFEWLNLR 184
>gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
Length = 1429
Score = 108 bits (269), Expect = 1e-21
Identities = 54/95 (56%), Positives = 70/95 (73%)
Frame = -3
Query: 287 EDTKTDSFETIDSKQSRTRAKKMTKLALKRARDWRQRVQFLADRILALAPSAHVADVLDR 108
E+ KT + ++ R R KKM K+AL +A+DWR+RV+FL D+IL+L + VAD+LD
Sbjct: 92 EEQKTKDETAVATR--RRRVKKMNKVALIKAKDWRERVKFLTDKILSLKSNQFVADILDA 149
Query: 107 RGVQMTPTDLAFVVRTVGRSSWTRALEVFEWLTLR 3
R VQMTPTD FVV++VG+ SW RALEVFEWL LR
Sbjct: 150 RLVQMTPTDYCFVVKSVGQESWQRALEVFEWLNLR 184